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# external modules
import numpy as num
import anuga.utilities.log as log
# ANUGA modules
from anuga.config import netcdf_mode_r, netcdf_mode_w, netcdf_mode_a, \
netcdf_float
def generic_asc2dem(name_in, name_out=None, quantity_name=None,
use_cache=False,
... | mperignon/anuga-sedtransport | file_conversion/generic_asc2dem.py | Python | gpl-2.0 | 6,583 | [
"NetCDF"
] | ad77508e5d7d68e28eb9102cb50b783197d4f3cd7bd6ad398f10985f6b3fcaee |
#!/usr/bin/env python
# if necessary, edit preceding line to point to your Python
# or launch as "python Make.py ..."
# Purpose: manage LAMMPS packages, external libraries, and builds
# create a version of LAMMPS specific to an input script(s)
# Syntax: Make.py switch args ...
# Help: type Make.py or Make.py ... | slitvinov/lammps-swimmer | src/Make.py | Python | gpl-2.0 | 27,642 | [
"LAMMPS"
] | 4d5f006eeea03430ed3a799d1c8ae86abc23f53677fa42d5337255b217c7ca68 |
import argparse
import numpy as np
import tempfile
import os
import getpass
import pyfits as pf
# catalog_name, output_name
sex_params = \
'''
CATALOG_NAME {catalog_name} # name of the output catalog
CATALOG_TYPE ASCII_HEAD # NONE,ASCII,ASCII_HEAD, ASCII_SKYCAT,
# ASCII_VOT... | nickkonidaris/kpy | SEDMr/RemoveBackground.py | Python | gpl-2.0 | 6,427 | [
"Galaxy"
] | 11e48181870fe2815079ce9314471c7200f0ea6e487b1d51a4ca514f418af81b |
#A* -------------------------------------------------------------------
#B* This file contains source code for the PyMOL computer program
#C* Copyright (c) Schrodinger, LLC.
#D* -------------------------------------------------------------------
#E* It is unlawful to modify or remove this copyright notice.
#F* -------... | gratefulfrog/lib | python/pymol/querying.py | Python | gpl-2.0 | 45,867 | [
"CRYSTAL",
"ChemPy",
"PyMOL"
] | ff6b056d624490b299b204908f14a9353e20fb636aeef64072a5c47877a15e85 |
# -*- coding: utf-8 -*-
# vim:noet:sw=4:ts=4:ft=vim
'''
File: imgurlib.py
Author: Vladimir Kolev
Version: 1.1a
Description: Python library to communicate with Imgur.com
'''
import json
import urlparse
import urllib
import oauth2 as oauth
REQUEST_TOKEN_URL = 'https://api.imgur.com/oauth/request_token'
AUTHORIZE_UR... | vkolev/ImgurLib | imgurlib.py | Python | mit | 11,954 | [
"VisIt"
] | dfe01bfc351bcd77a23a521967f5bd50143036d93e74237ee68c399f51f53e34 |
#!/usr/bin/python
#=============================================================================================
# MODULE DOCSTRING
#=============================================================================================
"""
Tools for constructing OpenMM System objects from various convenient input file formats... | andrrizzi/yank | Yank/systembuilder.py | Python | mit | 45,079 | [
"MDTraj",
"OpenMM"
] | 2bea2b1f5fc5384522207f350297a0d2ab78610ad7211a997f335c02ddadec0c |
# collection of generic self-defined functions
import os, sys # low level handling, such as command line stuff
import string # string methods available
import re # regular expressions
import math # math functions
import time # time functions
import anydbm # index databases (file hash)
from ... | lotharwissler/bioinformatics | python/base/low.py | Python | mit | 12,843 | [
"Biopython"
] | d82b2b2a5bce55e2b01ea7882ac757b76711478f6b07cd58e02458cd78bd9979 |
"""
Get ASE counts from BAMs or raw fastq data.
============================================================================
AUTHOR: Michael D Dacre, mike.dacre@gmail.com
CREATOR: Carlo Artieri
CREATOR: Tomas Babak
ORGANIZATION: Stanford University
LICENSE: MIT License, property of Stan... | TheFraserLab/ASEr | ASEr/__init__.py | Python | mit | 580 | [
"ASE"
] | aa09e6ae5d063297518b69cd4f9dc602db8a77f39178b87f3cf6914e044b44bd |
"""
This class brings together a L{solve.Solver} to choose a set of implmentations, a
L{fetch.Fetcher} to download additional components, and the user's configuration
settings.
"""
# Copyright (C) 2009, Thomas Leonard
# See the README file for details, or visit http://0install.net.
from zeroinstall import _
import ti... | pombredanne/zero-install | zeroinstall/injector/policy.py | Python | lgpl-2.1 | 18,875 | [
"VisIt"
] | 697387db84607788d3db9cacf9bd427616ed115ff82f5449234b480d1289649f |
from pylab import figure,show,connect,hist,plot,legend
from numpy import array, append, arange, empty, exp
from shogun import Gaussian, GMM
from shogun import RealFeatures
import util
util.set_title('EM for 1d GMM example')
#set the parameters
min_cov=1e-9
max_iter=1000
min_change=1e-9
#setup the real GMM
real_gmm=G... | MikeLing/shogun | examples/undocumented/python/graphical/em_1d_gmm.py | Python | gpl-3.0 | 1,911 | [
"Gaussian"
] | d3fd91884f256de019be52d814b4fdb9100258b2814ee908b05328b770409492 |
Simple Server
python3 -m http.server # 8000 # --bind 127.0.0.1
python2 -m SimpleHTTPServer # 8000
Python'ā atstares ir svarīgas.'
#Single line coment
""" Multiline comment.
Apostrofi apzīmē string, tāpat kā pēdiņas. \ zīme ļauj to labot.
There\'s a snake. Ir Python'am saprotami.
"""
Operators: = - * / ** % // #// flo... | RihardsT/forgettables | Languages_Programming/Python/python.py | Python | unlicense | 8,335 | [
"Brian"
] | db47e5e92163dbfa2924abbbd907a53e6bd155ac70d2678e15b4b096c5d59ab4 |
"""
This module gathers tree-based methods, including decision, regression and
randomized trees. Single and multi-output problems are both handled.
"""
# Authors: Gilles Louppe <g.louppe@gmail.com>
# Peter Prettenhofer <peter.prettenhofer@gmail.com>
# Brian Holt <bdholt1@gmail.com>
# Noel Da... | PatrickOReilly/scikit-learn | sklearn/tree/tree.py | Python | bsd-3-clause | 44,306 | [
"Brian"
] | fe0ecfab30370c25738a8e2f36755bcb40d0467ae8f85a8c53b0e91bf56b15c7 |
from django.test import TestCase, tag
from edc_appointment.models import Appointment
from edc_base import get_utcnow
from edc_metadata.metadata_updater import MetadataUpdater
from edc_reference import site_reference_configs
from edc_visit_schedule import site_visit_schedules
from edc_visit_tracking.constants import SCH... | botswana-harvard/edc-meta-data | edc_metadata/tests/test_metadata.py | Python | gpl-2.0 | 11,936 | [
"VisIt"
] | d8bbb72df06567067bf983afe683902bead179941af5edb25ce7a91e6e35de94 |
from __future__ import absolute_import
import unittest
import numpy as np
from pymatgen import Structure
from pymatgen.analysis.eos import EOS
from pymatgen.analysis.quasiharmonic import QuasiharmonicDebyeApprox
__author__ = 'Kiran Mathew'
class TestQuasiharmociDebyeApprox(unittest.TestCase):
def setUp(self):... | setten/pymatgen | pymatgen/analysis/tests/test_quasiharmonic_debye_approx.py | Python | mit | 5,823 | [
"pymatgen"
] | b97b34e4ae4de687e635b53b6703e6c5ebc9a761e67a422da002fbac6ed7c0b9 |
# Script control setup area
# script info
__script__.title = 'KKB Plot and Reduction 16.5.2021'
__script__.version = '2.0'
# 15.6.2017 Allow to reduce the detector range
# 15.6. Throw out points below resolution
# 16.6. Tidy up run time to display in the reduction; tidy up display properties
# 11.7.... | Gumtree/Kookaburra_scripts | Internal/KKB-Plot and Reduction_Mar2021.py | Python | epl-1.0 | 83,741 | [
"CRYSTAL"
] | e70a24b91e5e76ea42284a52e208af685f556fc93ef1fb8a61fdeff1f26d8ca7 |
#
# Copyright 2018 Red Hat | Ansible
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# ... | brandond/ansible | lib/ansible/plugins/lookup/k8s.py | Python | gpl-3.0 | 11,241 | [
"Galaxy",
"VisIt"
] | e02f9638d185e5173738a139806b6c08fa4eac8f8720aa568cac2d4f7683eeaf |
#!/usr/bin/env python
"""
=======
textext
=======
:Author: Pauli Virtanen <pav@iki.fi>
:Date: 2008-04-26
:License: BSD
Textext is an extension for Inkscape_ that allows adding
LaTeX-generated text objects to your SVG drawing. What's more, you can
also *edit* these text objects after creating them.
This brings some o... | rainwoodman/inkslides | extension/textext.py | Python | gpl-3.0 | 31,214 | [
"Brian"
] | 01ba79f6bcaa005c7cf4f6804d08e7527d10ce506586ac0355b406986de11392 |
# GDB plugin for etnaviv driver debugging.
# This needs gdb 7.5+ to work.
#
# usage (from gdb):
# source /path/to/etnaviv_gdb.py
#
# Commands:
# gpu-state (prefix|uniforms)
# Show full GPU state (default) or only registers with a certain prefix.
# The special prefix 'uniforms' shows only the shader ... | commshare/etna_viv | tools/etnaviv_gdb.py | Python | gpl-3.0 | 16,752 | [
"VisIt"
] | 4d58d7d6a36c111d2d139fce8a3877cb4ce75b021f1e6f420e20d5b3f0276c80 |
import os
from mredoc import Document, Section, VerbatimBlock, Paragraph, VerticalColTable
code = """
In a simulation lasting 350.0ms
Create a single compartment neuron 'cell1' with area and initialvoltage and capacitance
Add Leak channels to cell1 with conductance and reversalpotential
Inject step-current of ... | mikehulluk/mredoc | src/mredoc/testing/example4.py | Python | bsd-2-clause | 3,249 | [
"NEURON"
] | 90401fae50a36073c72353ec29c651fc834aec62f0aadb72170eb7bb4b4097dd |
#A* -------------------------------------------------------------------
#B* This file contains source code for the PyMOL computer program
#C* copyright 1998-2000 by Warren Lyford Delano of DeLano Scientific.
#D* -------------------------------------------------------------------
#E* It is unlawful to modify or remove ... | gratefulfrog/lib | python/chempy/place.py | Python | gpl-2.0 | 15,039 | [
"ChemPy",
"PyMOL"
] | 8f374bafe16530a12b27a7445eacffcede47c19ae5cc57bbe6d16650b2b7088a |
__author__ = "Brian O'Neill" # BTO
__doc__ = """
Module version = '0.2.4'
Slightly ad-hoc decorator
used_unused_keywords
for `__init__` function of `log_calls`. It's not *totally* ad-hoc:
`log_calls.__init__` only uses half the functionality of this decorator ;/
This decorator allows a function to determine whic... | Twangist/log_calls | log_calls/used_unused_kwds.py | Python | mit | 6,209 | [
"Brian"
] | 0a73b5b2ee50e07df829eb40eb716b014eca7acda1801ea57342875be2da22aa |
#!/usr/bin/python
# -*- coding: utf-8 -*-
# Copyright: (c) 2017, Marc Tschapek <marc.tschapek@itelligence.de>
# GNU General Public License v3.0+ (see COPYING or https://www.gnu.org/licenses/gpl-3.0.txt)
ANSIBLE_METADATA = {'metadata_version': '1.1',
'status': ['preview'],
'supp... | roadmapper/ansible | lib/ansible/modules/windows/win_disk_facts.py | Python | gpl-3.0 | 47,652 | [
"VisIt"
] | 146d86cff6382030a59a2cf0950d60818347212e95c2a2fa55ad7ca4e825768c |
import sys
import pprint
from ast import NodeTransformer, Str, Name, Param
from ast import Module, FunctionDef, arguments, Return, keyword
from ast import Load, ClassDef, Assign, Store
import ast
import inspect
# my hack for not installing the astunparse, just pip install it.
sys.path.append("/home/mdupont/experiments... | h4ck3rm1k3/gcc-ontology | lib/ast_pattern.py | Python | gpl-3.0 | 2,915 | [
"VisIt"
] | ae7a0963221a529ef0774801af761ad3313e4a3585f3e69503f7ff57cdd25b5e |
import numpy as np
import robosuite.utils.transform_utils as T
from robosuite.environments.manipulation.two_arm_env import TwoArmEnv
from robosuite.models.arenas import EmptyArena
from robosuite.models.objects import CylinderObject, PlateWithHoleObject
from robosuite.models.tasks import ManipulationTask
from robosuite... | ARISE-Initiative/robosuite | robosuite/environments/manipulation/two_arm_peg_in_hole.py | Python | mit | 22,440 | [
"Gaussian"
] | 189a508f89971a4bf65213cbec1220be8d8278a9d8c8d0c20e3ca8a9bb7544cd |
# -*- coding: utf-8 -*-
"""Utility functions for plotting M/EEG data."""
# Authors: Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Denis Engemann <denis.engemann@gmail.com>
# Martin Luessi <mluessi@nmr.mgh.harvard.edu>
# Eric Larson <larson.eric.d@gmail.com>
# Mainak Jas <mainak... | Teekuningas/mne-python | mne/viz/utils.py | Python | bsd-3-clause | 130,082 | [
"Mayavi"
] | fa2a3f96619d2ae6d7aa6598ea3b2c4bc871299e731266104e77b89eabc860df |
"""
This package provides a version of pymatgen's alchemy transmuter for
performing transformations on structures queried from a Materials Project
style database.
"""
| materialsproject/pymatgen-db | pymatgen/db/alchemy/__init__.py | Python | mit | 167 | [
"pymatgen"
] | 695c3082d83d1e7efad83984b52a86cc9c15ce7b51b6195fe9b8bb1b598a983a |
"""
================================================
Kernel Density Estimate of Species Distributions
================================================
This shows an example of a neighbors-based query (in particular a kernel
density estimate) on geospatial data, using a Ball Tree built upon the
Haversine distance metric... | chrsrds/scikit-learn | examples/neighbors/plot_species_kde.py | Python | bsd-3-clause | 4,038 | [
"Gaussian"
] | e793e6780569c5fa79f80a94f2e34c9ed239e211a9cbcbba592443a16b2f9f9c |
"""
Module for povray file format support.
See http://www.povray.org/ for details on the format.
"""
import os
import numpy as np
from ase.io.eps import EPS
from ase.data import chemical_symbols
def pa(array):
"""Povray array syntax"""
return '<% 6.2f, % 6.2f, % 6.2f>' % tuple(array)
def pc(array):
"""... | freephys/python_ase | ase/io/pov.py | Python | gpl-3.0 | 7,212 | [
"ASE",
"Jmol",
"VMD"
] | 165675641d6e5e233fd55fe80581222a180c77a28216226646345fd85eca1f04 |
import os
import tempfile
import shutil
from django.test import TestCase, RequestFactory
from django.core.urlresolvers import reverse
from django.contrib.auth.models import Group
from django.contrib.messages.storage.fallback import FallbackStorage
from django.core.files.uploadedfile import UploadedFile
from django.cor... | RENCI/xDCIShare | hs_app_netCDF/tests/test_netcdf_file_update.py | Python | bsd-3-clause | 12,796 | [
"NetCDF"
] | cbaba379cfa5da606726e75e8d6ae9a4d9ec3eb86e7ed0e121a057ff363cd226 |
# -*- coding: utf-8 -*-
"""
Models used to implement SAML SSO support in third_party_auth
(inlcuding Shibboleth support)
"""
from __future__ import absolute_import
import json
import logging
import re
from config_models.models import ConfigurationModel, cache
from django.conf import settings
from django.contrib.sites... | philanthropy-u/edx-platform | common/djangoapps/third_party_auth/models.py | Python | agpl-3.0 | 36,523 | [
"VisIt"
] | 89e4538313b2b608cc79b2db57df503237f0da76773fc0ffe122892f94567ae9 |
# Copyright (C) 2015 Hydriz Scholz
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is distributed in ... | Hydriz/DBReports | reports/mosttransclusions.py | Python | gpl-3.0 | 2,027 | [
"VisIt"
] | b51604bb4c4262f1dd71a2687a4a8e2e0053138c7d7c1e124515884905a74786 |
"""Dynamically decide from where to import other SDK modules.
All other protorpc code should import other SDK modules from
this module. If necessary, add new imports here (in both places).
"""
__author__ = 'yey@google.com (Ye Yuan)'
# pylint: disable=g-import-not-at-top
# pylint: disable=unused-import
try:
from g... | ychen820/microblog | y/google-cloud-sdk/platform/google_appengine/lib/protorpc-1.0/protorpc/google_imports.py | Python | bsd-3-clause | 470 | [
"MOE"
] | 75e5d22bed1ced7f054df2c4db8daca3119a6bc2f594893f2e06d9ea96e0aaec |
# -*- coding: utf-8 -*-
"""
===============================================================================
Atom classes for LAMMPS structure data (:mod:`sknano.core.atoms._lammps_atoms`)
===============================================================================
.. currentmodule:: sknano.core.atoms._lammps_atoms
... | androomerrill/scikit-nano | sknano/core/atoms/_lammps_atoms.py | Python | bsd-2-clause | 1,633 | [
"LAMMPS"
] | cb766180221c5a2943fd84b9696184f43ac5a7431f752ba8fb2a61f8da38f8fe |
# Copyright (c) 2012 - 2014 the GPy Austhors (see AUTHORS.txt)
# Licensed under the BSD 3-clause license (see LICENSE.txt)
import numpy as np
from ..core import GP
from .. import likelihoods
from .. import kern
class GPRegression(GP):
"""
Gaussian Process model for regression
This is a thin wrapper aroun... | ptonner/GPy | GPy/models/gp_regression.py | Python | bsd-3-clause | 1,259 | [
"Gaussian"
] | f029bbc5956df167034969bea16178510dca3ba45e8cd6315be150bb28145eb5 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
#
# Copyright (C) Pootle contributors.
#
# This file is a part of the Pootle project. It is distributed under the GPL3
# or later license. See the LICENSE file for a copy of the license and the
# AUTHORS file for copyright and authorship information.
from django.contrib.au... | Avira/pootle | pootle/core/initdb.py | Python | gpl-3.0 | 9,804 | [
"VisIt"
] | 1c61f801a8151d36c859e586fb64f50f45b0f354ea0176456a14604dfc800206 |
"""Main module."""
import time as _time
import numpy as _np
import scipy.signal as _scysig
import scipy.integrate as _scyint
import scipy.optimize as _scyopt
import matplotlib.pyplot as _mplt
import matplotlib.gridspec as _mgs
from matplotlib.collections import PolyCollection as _PolyCollection
from siriuspy.devices... | lnls-fac/apsuite | apsuite/commisslib/measure_bbb_data.py | Python | mit | 44,044 | [
"Gaussian"
] | ef363a95f4fa9aae388561c74ef76c52b64ed423d5b468397afd4843ccd04001 |
# Audio Tools, a module and set of tools for manipulating audio data
# Copyright (C) 2007-2016 Brian Langenberger
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the Licens... | tuffy/python-audio-tools | audiotools/m4a.py | Python | gpl-2.0 | 36,305 | [
"Brian"
] | d6d24020cae5746c9689da1316d3277daece863f092332e49d9211845a906739 |
#!/usr/bin/env python
"""
initial.py
ROMS initial conditions utilities
Written by Brian Powell on 01/15/14
Copyright (c)2010--2021 University of Hawaii under the MIT-License.
"""
import seapy
import numpy as np
import netCDF4
def from_roms(roms_file, ini_file, record=0, time=None, grid=None,
... | powellb/seapy | seapy/roms/initial.py | Python | mit | 2,503 | [
"Brian",
"NetCDF"
] | 5374c93c0a81da4313c6d6ed517dfc7dd74ced4dd561cdcacfd305d3ba12c99d |
#
# Copyright (C) 2013,2014 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later... | sehrhardt/espresso | samples/python/debye_hueckel.py | Python | gpl-3.0 | 7,857 | [
"ESPResSo"
] | 87e072255727414a60d4c854df9c64e359c4c1a068ae85ba4b533706e4a48ec9 |
#!/usr/bin/env python
# Copyright 2017 Battelle Energy Alliance, LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by appl... | idaholab/raven | framework/raven_qsub_command.py | Python | apache-2.0 | 2,985 | [
"MOOSE"
] | 0bc0fdbecdfe382752bf4df74acbfa9ac88ab1737623e1ebb6b68414548a41fd |
"""
This module contains all kinds of functions needed for execution of the notebook
"""
import scipy
import os
import json
import pandas as pd
import itertools
import numpy as np
import warnings
import requests
from matplotlib import cm
from matplotlib import pyplot as plt
from matplotlib.gridspec import GridSpec
imp... | mdeff/ntds_2017 | projects/reports/countries_development/Modules/utils.py | Python | mit | 23,618 | [
"Gaussian"
] | 83b2d0ca91ff77ac569bfdc49a00d206d2f3f3e0290ae9ecd5a8139e3730d3f1 |
#!/usr/bin/env python
# Initial author: Solaiappan Manimaran
# Wrapper file for the following modules:
# patholib: generates host/target genome libraries from ncbi nt database for given taxon IDs
# pathomap: aligns reads to host/target database independent of read type using Bowtie2
# pathoid: reassigns ambiguous read... | PathoScope/PathoScope | pathoscope/pathoscope2.py | Python | gpl-3.0 | 20,096 | [
"BLAST"
] | 5ebdd2763098fcf87132ad3120976d23dd8fe19c0890130ed8de6aa4efbb4e53 |
import os
import copy
import time
import random
import sys
import shutil
import subprocess
from subprocess import STDOUT
#Execute a subprocess with standard output
def execute(command):
popen = subprocess.Popen(command, stdout=subprocess.PIPE)
lines_iterator = iter(popen.stdout.readline, b"")
for line... | Microsoft/distributed_skipgram_mixture | scripts/run.py | Python | mit | 3,028 | [
"VisIt"
] | af1d539c3369044e5eee48eab05df64ce98f8eb521299d199097f03cb5e03882 |
"""
Generate Gauss-Kronrod quadrature abscissas and weights.
Example usage
-------------
Generate Gauss-Kronrod quadrature rules::
>>> distribution = chaospy.Beta(2, 2, lower=-1, upper=1)
>>> for order in range(5): # doctest: +NORMALIZE_WHITESPACE
... abscissas, weights = chaospy.generate_quadrature... | jonathf/chaospy | chaospy/quadrature/kronrod.py | Python | mit | 9,559 | [
"Gaussian"
] | 2c396e1f7dc110ae605b6798499586c3657bd6df82b1fb3715c64feefd1a89c2 |
###
### Run this script with pvpython so python can find paraview imports.
###
### Purpose:
###
### This script generates flat earth images of the unstructured
### grid used in the simulation. I noticed some issues when using the argument
### names that were originally used, those are documented in a long comment... | Kitware/cinema | scripts/data_generation/generate2dMpasData.py | Python | bsd-3-clause | 6,796 | [
"ParaView"
] | e541bb2c361c026b59f373779388d701b502c9205c4199b5b5193863db2951d4 |
'''
Created on 18 Jan 2013
@author: Kieran Finn
'''
import time
beginning=time.time()
import urllib2
import sys
import json
from functions import *
import time
import pickle
from math import pi
from scipy.integrate import quad
import numpy as np
from collections import defaultdict
import os
in_fnam... | christensen5/pyIBCC | attic/get_planet_data.py | Python | mit | 6,128 | [
"Gaussian"
] | abd6d2a9ff63d43d777d71f8cbbc5e0613c43c2255d1b55a06382808b3599882 |
"""
DIRAC Times module
Support for basic Date and Time operations
based on system datetime module.
It provides common interface to UTC timestamps,
converter to string types and back.
The following datetime classes are used in the returned objects:
- dateTime = datetime.datetime
- date = datetime.date
- t... | andresailer/DIRAC | Core/Utilities/Time.py | Python | gpl-3.0 | 8,945 | [
"DIRAC"
] | 8f9ac4c574c4fd5c37d7b93f995bf99e7ed38530ecfcd44f6d8076b6c3c9cbb6 |
"""
"""
from wheezy.http import WSGIApplication
from wheezy.http.middleware import http_cache_middleware_factory
from wheezy.web.middleware import bootstrap_defaults
from wheezy.web.middleware import http_error_middleware_factory
from wheezy.web.middleware import path_routing_middleware_factory
from shared.middleware... | akornatskyy/sample-blog-api | src/app.py | Python | mit | 1,088 | [
"VisIt"
] | d28a255cf0de6c65db0f20df25a7cdd575144deb0296a4a11d3898b779a77167 |
# coding: utf-8
"""
This module defines the Node class that is inherited by Task, Work and Flow objects.
"""
from __future__ import division, print_function, unicode_literals
import sys
import os
import time
import collections
import abc
import six
import numpy as np
from pprint import pprint
from atomicfile import A... | migueldiascosta/pymatgen | pymatgen/io/abinit/nodes.py | Python | mit | 38,973 | [
"ABINIT",
"pymatgen"
] | 76cd8f62b9d290ff48db1460b7566be12a576524f17b9bec26ca02472df0f499 |
#!/usr/bin/env python
"""
Framework to start a simulated vehicle and connect it to MAVProxy.
Peter Barker, April 2016
based on sim_vehicle.sh by Andrew Tridgell, October 2011
"""
from __future__ import print_function
import atexit
import errno
import getpass
import optparse
import os
import os.path
import re
import ... | roger-zhao/ardupilot-3.5-dev | Tools/autotest/sim_vehicle.py | Python | gpl-3.0 | 33,210 | [
"Firefly"
] | 59eac42389c09a3cf6398312d2fd6dc77b084a96561d7179bdee9ee645419bc2 |
#!/usr/bin/env python
#
# DNATool - A program for DNA sequence manipulation
# Copyright (C) 2012- Damien Farrell & Jens Erik Nielsen
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either vers... | dmnfarrell/peat | DNATool2/SeqIO.py | Python | mit | 13,858 | [
"BLAST"
] | 54547d73dae5eaa5ba41f792ef26721fc65b2c5ed34599a897f12b9696ea2ad4 |
# -*- coding: utf-8 -*-
#
# pynest_example_template.py
#
# This file is part of NEST.
#
# Copyright (C) 2004 The NEST Initiative
#
# NEST is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 2 of the... | sdiazpier/nest-simulator | doc/userdoc/contribute/templates/pynest_example_template.py | Python | gpl-2.0 | 5,837 | [
"NEURON"
] | 5afa00f561d996fe52ad82fd81fd1b8fe738bfbbd73b6509fcb19eab1a58e413 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
# This file is a part of DARFI project (dna Damage And Repair Foci Imager)
# Copyright (C) 2014 Ivan V. Ozerov
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License version 2 as·
# pu... | varnivey/darfi | engine/pic_an_calc.py | Python | gpl-2.0 | 16,108 | [
"Gaussian"
] | 10120e9186e091a9cc5cac1a21bc8de208390c6ae26d2e1e65da5a33fcc9c0f6 |
'''
Created on 2012-11-10
@author: Andre R. Erler
'''
## imports
from numpy import array, arange, zeros, diff
import os
import re
# netcdf stuff
from netcdf import Dataset, add_coord, copy_dims, copy_ncatts, copy_vars
# data root folder
from socket import gethostname
hostname = gethostname()
if hostname=='komputer':... | aerler/WRF-Tools | Python/archive/avgWRF_2045-2056_A2.py | Python | gpl-3.0 | 8,594 | [
"NetCDF"
] | c9c983b8539305bd53f903120881e7be928b9efb700e18d96cb07c6f3bf6c568 |
# pylint: disable=bad-continuation
"""
Certificate HTML webview.
"""
import logging
import urllib
from datetime import datetime
from uuid import uuid4
import pytz
from django.conf import settings
from django.contrib.auth.models import User
from django.http import Http404, HttpResponse
from django.template import Reque... | jolyonb/edx-platform | lms/djangoapps/certificates/views/webview.py | Python | agpl-3.0 | 32,632 | [
"VisIt"
] | 93ae4b4aa6dbcc5227f5c9155156da826af09b52883fdcc06f74391996590c94 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
# vispy: gallery 30
# Copyright (c) 2015, Vispy Development Team.
# Distributed under the (new) BSD License. See LICENSE.txt for more info.
"""
Just a very fake galaxy.
Astronomers and cosmologists will kill me !
"""
import numpy as np
from vispy import gloo
from vispy i... | sh4wn/vispy | examples/demo/gloo/galaxy.py | Python | bsd-3-clause | 5,921 | [
"Galaxy"
] | fe4fd2e1b45c8f84cfeec88ee64e7afad75b753c698e0de926d07fff47b70dce |
# -*- coding: utf-8 -*-
import datetime
from south.db import db
from south.v2 import SchemaMigration
from django.db import models
class Migration(SchemaMigration):
def forwards(self, orm):
# Changing field 'DataTable.link'
db.alter_column('neuroelectro_datatable', 'link', self.gf('dj... | neuroelectro/neuroelectro_org | neuroelectro/south_migrations/0051_auto__chg_field_datatable_link.py | Python | gpl-2.0 | 26,892 | [
"NEURON"
] | a5c0c8b94d9a93c622b81cf1207eb1d05df470976b8e4edb6928b7d5e136cb11 |
##############################################################################
# MDTraj: A Python Library for Loading, Saving, and Manipulating
# Molecular Dynamics Trajectories.
# Copyright 2012-2013 Stanford University and the Authors
#
# Authors: Robert McGibbon
# Contributors: Kyle A. Beauchamp
#
# MDTraj i... | swails/mdtraj | mdtraj/geometry/__init__.py | Python | lgpl-2.1 | 2,394 | [
"MDTraj"
] | 3dc326df18333b01f0bc891630cb56ec8586e25966ccefe974cebe4c6cfa5a46 |
#
# Particle swarm optimisation (PSO).
#
# This file is part of PINTS (https://github.com/pints-team/pints/) which is
# released under the BSD 3-clause license. See accompanying LICENSE.md for
# copyright notice and full license details.
#
# Some code in this file was adapted from Myokit (see http://myokit.org)
#
impor... | martinjrobins/hobo | pints/_optimisers/_pso.py | Python | bsd-3-clause | 11,155 | [
"Gaussian"
] | 808631eb0bcfa5c4d6c2e7a50b7e026d70d278498d0b599189c1c2b3dde705a4 |
#
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not us... | aokolnychyi/spark | python/pyspark/ml/regression.py | Python | apache-2.0 | 62,260 | [
"Gaussian"
] | 91d7d596317e08b7c0466f821749bf22b09d556d63be4ef31d76963426970afe |
#!/usr/bin/env python
import vtk
from vtk.test import Testing
from vtk.util.misc import vtkGetDataRoot
VTK_DATA_ROOT = vtkGetDataRoot()
# Create the RenderWindow, Renderer and both Actors
#
ren1 = vtk.vtkRenderer()
renWin = vtk.vtkRenderWindow()
renWin.AddRenderer(ren1)
iren = vtk.vtkRenderWindowInteractor()
iren.SetR... | ashray/VTK-EVM | Filters/General/Testing/Python/splitVectors.py | Python | bsd-3-clause | 4,578 | [
"VTK"
] | f32d85657935ac43b5eceb502b9ee77872a7e3843f60a58240ed09d619f64cf8 |
"""
The I_mmi measure, briefly looked at by the BROJA team.
"""
from ..pid import BasePID
from ...multivariate import coinformation
__all__ = (
'PID_MMI',
)
class PID_MMI(BasePID):
"""
The minimum mutual information partial information decomposition.
This measure is known to be accurate for gaussi... | dit/dit | dit/pid/measures/immi.py | Python | bsd-3-clause | 1,013 | [
"Gaussian"
] | eaefd70e0d4f6e9af704dda457a43cb385194f3e9506aed3d3d40a38883a1b90 |
"""
MUSE -- A Multi-algorithm-collaborative Universal Structure-prediction Environment
Copyright (C) 2010-2017 by Zhong-Li Liu
This program is free software; you can redistribute it and/or modify it under the
terms of the GNU General Public License as published by the Free Software Foundation
version 2 of ... | zhongliliu/muse | setup.py | Python | gpl-2.0 | 1,462 | [
"CRYSTAL"
] | a06fc767f4fc0546c7fdf9f084dbcdfeb35020fe65362cb8458857b372113845 |
"""
Birdy has a command line interface to interact with a Web Processing Service.
Example
-------
Here is an example with Emu_ WPS service::
$ birdy -h
$ birdy hello -h
$ birdy hello --name stranger
'Hello Stranger'
Configure WPS service URL
-------------------------
By default Birdy talks to a WPS s... | bird-house/birdy | birdy/cli/__init__.py | Python | apache-2.0 | 2,729 | [
"NetCDF"
] | e1405585207bb9d4a26fbee70e5374e015d446a8ac8321612627070730707c9e |
"""
This module contain solvers for all kinds of equations:
- algebraic or transcendental, use solve()
- recurrence, use rsolve()
- differential, use dsolve()
- nonlinear (numerically), use nsolve()
(you will need a good starting point)
"""
from sympy.core.compatibility import iterable, is_s... | ichuang/sympy | sympy/solvers/solvers.py | Python | bsd-3-clause | 80,432 | [
"Gaussian"
] | b43be5b7538bea76e8f1c4d7a396232aebbfaf181ae2c368de8ad7d57a034444 |
#
# Copyright 2021 Lars Pastewka (U. Freiburg)
# 2020 Johannes Hoermann (U. Freiburg)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public ... | libAtoms/matscipy | examples/electrochemistry/to_html.py | Python | lgpl-2.1 | 2,685 | [
"Matscipy"
] | 70aabe9db20c082ba84d7416682a47c76639c22e4b6f7f4b38e72207109b60f1 |
from datetime import timedelta
import pytest
import pandas.util._test_decorators as td
from pandas import (
DataFrame,
to_datetime,
)
@pytest.fixture(params=[True, False])
def raw(request):
"""raw keyword argument for rolling.apply"""
return request.param
@pytest.fixture(
params=[
"tr... | datapythonista/pandas | pandas/tests/window/conftest.py | Python | bsd-3-clause | 5,251 | [
"Gaussian"
] | efb4a1218e29adf3afa80bc861209f02057b110d315cdf470ba6d22685bbfe47 |
#!/usr/bin/env python2.5
# -*- coding:utf-8 -*-
'''
simpleoauth-gae: Simple and thin OAuth library for GAE Environment
Visit http://code.google.com/p/simpleoauth-gae/
------------------------------------------------------------------------------
Copyright (c) 2010, TAGOMORI Satoshi <tagomoris@gmail.com>.
All rights ... | tagomoris/simpleoauth-gae | simpleoauth_gae/twitter.py | Python | bsd-2-clause | 11,628 | [
"VisIt"
] | fd23317a2bda72b8cf4ec2434a6fd3fe025d12afc1a6892614a8240a78791475 |
# -*- coding: utf-8 -*-
""" Sahana Eden Incident Reporting Model
@copyright: 2009-2013 (c) Sahana Software Foundation
@license: MIT
Permission is hereby granted, free of charge, to any person
obtaining a copy of this software and associated documentation
files (the "Software"), to deal in the Sof... | flavour/tldrmp | modules/s3db/irs.py | Python | mit | 57,543 | [
"VisIt"
] | 7a07b1bb8b5a3bbbf9097fe74667052cd72035096d652631f5959460e02de424 |
#!/usr/bin/env python
"""
Calculates the density of air baed upon the Ideal Gas Law and the Magnus Equation
"""
import argparse
import numpy as np
from scipy.io import netcdf
import math
import os
def calculate_density(pressure, temperature, relative_humidity):
Rl = 287.058 # R for luft (dry air), ... | pgierz/semic | echam6_python_wrapper/echam6_calculate_air_density.py | Python | mit | 1,905 | [
"NetCDF"
] | f33d632e77d0bb68f053657fb384c6e675ac2c0fdc6a7b7e91db605be6acdc33 |
import tensorflow as tf
import numpy as np
from initialization import xavier_glorot_initialization
class VariationalAutoencoder():
def __init__(self,
input_dim,
latent_dim,
hidden_dim=10,
batch_size=100,
num_layers=0,
... | arahuja/generative-tf | generative-tf/models/variational_autoencoder.py | Python | apache-2.0 | 7,955 | [
"Gaussian"
] | 492b580ab2c81dff481149d9867d1ee27a3e2087e660c10fc35170799bcba3fb |
# -*- Mode: python; tab-width: 4; indent-tabs-mode:nil; coding:utf-8 -*-
# vim: tabstop=4 expandtab shiftwidth=4 softtabstop=4
#
# MDAnalysis --- http://www.mdanalysis.org
# Copyright (c) 2006-2016 The MDAnalysis Development Team and contributors
# (see the file AUTHORS for the full list of names)
#
# Released under th... | kain88-de/mdanalysis | package/MDAnalysis/analysis/legacy/x3dna.py | Python | gpl-2.0 | 35,175 | [
"MDAnalysis"
] | 8dc4581925081813d44daf7959a8fe23a85164053dd238b21831b49e8640f43e |
#pylint: disable=C0111
#pylint: disable=W0621
from lettuce import world, step
from nose.tools import assert_true
from nose.tools import assert_equal
from auth.authz import get_user_by_email
from selenium.webdriver.common.keys import Keys
import time
from logging import getLogger
logger = getLogger(__name__)
######... | elimence/edx-platform | cms/djangoapps/contentstore/features/common.py | Python | agpl-3.0 | 4,876 | [
"VisIt"
] | 16383836aebe14befef2f5667e058f9e9eb6659d0e5bb0c794c5b2665cfbf8e6 |
# --------------------------------------------------------------------------------------------
# Copyright (c) Microsoft Corporation. All rights reserved.
# Licensed under the MIT License. See License.txt in the project root for license information.
# --------------------------------------------------------------------... | yugangw-msft/azure-cli | src/azure-cli-core/azure/cli/core/util.py | Python | mit | 49,814 | [
"VisIt"
] | 1c0abccd230fffba08a583a22f71cffa98f7a89d6ad200424f2f0a51ff32f813 |
from __future__ import unicode_literals
import base64
import datetime
import hashlib
import json
import netrc
import os
import re
import socket
import sys
import time
import math
from ..compat import (
compat_cookiejar,
compat_cookies,
compat_etree_fromstring,
compat_getpass,
compat_http_client,
... | wndias/bc.repository | script.module.youtube.dl/lib/youtube_dl/extractor/common.py | Python | gpl-2.0 | 76,979 | [
"VisIt"
] | b645a0185e390363310c90d81172683d1e7c8d92734ecfad4cd8a5e23c07203a |
# this lets me be lazy..starts the cloud up like I want from my json, and gives me a browser
# copies the jars for me, etc. Just hangs at the end for 10 minutes while I play with the browser
import unittest
import time,sys
sys.path.extend(['.','..','py'])
import h2o_cmd, h2o, h2o_glm, h2o_args
import h2o_browse as h2b... | 111t8e/h2o-2 | py/testdir_hosts/glm_bench_gaussian.py | Python | apache-2.0 | 6,014 | [
"Gaussian"
] | 401ef73e7f78671aca256312396310b106eccbb8ec24875483fcb96b3c906d5a |
# proxy module
from __future__ import absolute_import
from mayavi.components.ui.contour import *
| enthought/etsproxy | enthought/mayavi/components/ui/contour.py | Python | bsd-3-clause | 97 | [
"Mayavi"
] | a1e38f89bcc3f3d718cf8cc3c07466877bb2f51c2333327969c6a449e1f643d9 |
# -*- coding: utf-8 -*-
import random
import urllib.parse
import importlib
import datetime
from unittest.mock import patch
from datetime import date
from django.test import TestCase
from django.contrib.auth.models import User
from django.urls import reverse, reverse_lazy
from django.utils import timezone
from django.... | savoirfairelinux/santropol-feast | src/order/tests.py | Python | agpl-3.0 | 66,833 | [
"VisIt"
] | 93d3f56976bebfe6d2ce2c0b5fe90af5f0964f30e170d334aca546ee19172a16 |
# Copyright (C) 2012,2013
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of t... | BackupTheBerlios/espressopp | src/integrator/DPDThermostat.py | Python | gpl-3.0 | 1,847 | [
"ESPResSo"
] | 5678b97ac2109e884abac825c8b7821d1fd5062d6c7b897b6d836a91814d74f3 |
"""
Acceptance tests for Studio related to the container page.
"""
from ..pages.studio.auto_auth import AutoAuthPage
from ..pages.studio.overview import CourseOutlinePage
from ..fixtures.course import CourseFixture, XBlockFixtureDesc
from .helpers import UniqueCourseTest
from ..pages.studio.component_editor import Co... | LICEF/edx-platform | common/test/acceptance/tests/test_studio_container.py | Python | agpl-3.0 | 17,313 | [
"VisIt"
] | 6e87a7ae379abb8fe8507376c15486cc0e711b0bf86a08605f7c19d0a9162c2f |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
#
# Copyright 2014-2015 Adrian Bürger
#
# This file is part of PECas.
#
# PECas is free software: you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License as published by
# the Free Software Foundation, either version 3 of the Lice... | adbuerger/PECas | concept_tests/sd_check_pendulum.py | Python | lgpl-3.0 | 5,333 | [
"Gaussian"
] | a50f833f03ea1b25f837ae078c14a2033adb83e25a013d23ef25608df9dd96a8 |
#!/usr/bin/env python
import vtk
from vtk.test import Testing
from vtk.util.misc import vtkGetDataRoot
VTK_DATA_ROOT = vtkGetDataRoot()
# This example illustrates how one may explicitly specify the range of each
# axes that's used to define the prop, while displaying data with a different
# set of bounds (unli... | hlzz/dotfiles | graphics/VTK-7.0.0/Rendering/Annotation/Testing/Python/cubeAxes3.py | Python | bsd-3-clause | 2,901 | [
"VTK"
] | bb147c972db86a74a563136e7ea498ed8c5712a9d5e507e50d28d3e6b2bd3cd7 |
#!/usr/bin/env python
"""
seq_pipe.py
Kyle McChesney
This script is the entry point to several different pipelines
all of which have to do with NGS analysis.
Currently:
+ bowtie-alignment
+ tophat-alignment
+ cuffdiff
+ bigWig generation
"""
# ruffus imports
from ruffus import *
import ruffus.cmdline as cmdline
... | mbiokyle29/pipelines | seq/seq_pipe.py | Python | mit | 3,437 | [
"Bowtie"
] | 246820e6163bb57209758b5044492227b710f566619dc9eb36dccc36bb1cf993 |
# DEPRECATED
# As of 7 Feb 2016, RGZ data dumps do not include the users collection.
from pymongo import MongoClient
import json
client = MongoClient('localhost', 27017)
db = client['radio']
classifications = db['radio_classifications']
users = db['radio_users'] # volunteers doing each classification (can be anonym... | willettk/rgz-analysis | python/authors_rgz.py | Python | mit | 1,017 | [
"Galaxy"
] | 651a51fc2c39c40100c8265dabf248b4b977f59e7d28f531ee2caa882051b702 |
#!/usr/bin/python
"""
TCP Communications Module
"""
import asyncore
import socket
import errno
import pickle
from time import time as _time, sleep as _sleep
from io import StringIO
from .debugging import ModuleLogger, DebugContents, bacpypes_debugging
from .core import deferred
from .task import FunctionTask, OneS... | JoelBender/bacpypes | py34/bacpypes/tcp.py | Python | mit | 31,592 | [
"ASE"
] | 45978628b820a7415824d90ad2ea70c806e755c17f719a42bee347b457f88fed |
import glob
import astropy.io.fits as fits
import os
import time
import numpy as n
import sys
import scipy.spatial.ckdtree as t
# specific functions
from scipy.stats import norm
from scipy.integrate import quad
from scipy.interpolate import interp1d
import random
from astropy.cosmology import FlatLambdaCDM
import ast... | JohanComparat/nbody-npt-functions | bin/bin_SMHMr/MD10_add_4MOST_CLUSTERS_members.py | Python | cc0-1.0 | 3,617 | [
"Galaxy"
] | b77eb8cc7d330dff17faed3064ffc14dda160e118540bb41864809d3c039da4f |
# -*- coding: utf-8 -*-
# Copyright (C) 2009-2014 CEA/DEN, EDF R&D
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version 2.1 of the License, or (at your option) any later ve... | FedoraScientific/salome-hexablock | doc/test_doc/hemisphere/sphere.py | Python | lgpl-2.1 | 1,797 | [
"VTK"
] | fb5a132ddcefc2e97f5dbb5d78a7a530d4901b49012255ecf3434f7b4ec869ab |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
#
# Licensed under the GNU LGPL v2.1 - http://www.gnu.org/licenses/lgpl.html
# Based on Copyright (C) 2016 Radim Rehurek <radimrehurek@seznam.cz>
"""
Inspired by the Blei's original DTM code and paper.
Original DTM C/C++ code: https://github.com/blei-lab/dtm
DTM Paper: h... | wtgme/labeldoc2vec | gensim/models/ldaseqmodel.py | Python | lgpl-2.1 | 43,582 | [
"Gaussian"
] | d1c8b1a69996d88186287c4781f62b305708453a06a74b44702828a0bdce36a4 |
# -*- coding: utf-8 -*-
"""
Acceptance tests for Video.
"""
import json
from unittest import skipIf, skip
import requests
from box.test.flaky import flaky
from ..helpers import UniqueCourseTest, is_youtube_available
from ...pages.lms.video.video import VideoPage
from ...pages.lms.tab_nav import TabNavPage
from ...pag... | LICEF/edx-platform | common/test/acceptance/tests/video/test_video_module.py | Python | agpl-3.0 | 38,380 | [
"VisIt"
] | 2ec912af7fa1e816f581e06cec4d28e3af6b813c741f8013721044a9044faf32 |
# -*- coding: utf-8 -*-
#
# This file is part of Invenio.
# Copyright (C) 2015 CERN.
#
# Invenio is free software; you can redistribute it and/or
# modify it under the terms of the GNU General Public License as
# published by the Free Software Foundation; either version 2 of the
# License, or (at your option) any later... | jirikuncar/invenio | invenio/modules/search/walkers/elasticsearch.py | Python | gpl-2.0 | 3,095 | [
"VisIt"
] | af30b1cf1fd9a0bb7db5119ca45d23ecd1ba534a056f10f290d72c0367b4e829 |
#!/usr/bin/env python
#pylint: disable=missing-docstring
#################################################################
# DO NOT MODIFY THIS HEADER #
# MOOSE - Multiphysics Object Oriented Simulation Environment #
# #... | yipenggao/moose | python/chigger/tests/transform/scale.py | Python | lgpl-2.1 | 1,490 | [
"MOOSE",
"VTK"
] | ada72157f453e5a54329ac443d221faeaa2200f53f798ea7544be5b9ab42a4ce |
#!/usr/bin/python2.7
"""
Add - Make script add VM interfaces to the correct bridge
#ifconfig | grep ma:ca:dd:re:ss:00 (only match last 2 bytes)
#sudo ovs-vsctl del-port br5 vnet
#sudo ovs-vsctl add-port br5 vnet tag=30
#sudo ifconfig vnet up
Add - auto mount STORAGEIV
"""
import paramiko
import... | trjones841/pynet_class | Various Scripts/KVM_OVS_Interface_Mapping.py | Python | apache-2.0 | 7,949 | [
"CASINO"
] | 9aaf5849116d139ec1a386ec2f6e970302ad5ff81b1567dd349ed1fd1fd72163 |
import inspect
import cairocffi
import pycparser
ALL_THE_CODE = ''.join(
line
for module in [
cairocffi, cairocffi.surfaces, cairocffi.patterns,
cairocffi.fonts, cairocffi.context, cairocffi.matrix]
for line in inspect.getsourcelines(module)[0])
class Visitor(pycparser.c_ast.NodeVisitor)... | SimonSapin/cairocffi | utils/cairo_coverage.py | Python | bsd-3-clause | 777 | [
"VisIt"
] | 5a70f1862a5411f0291827829ca9cd315d3fa0622c3c39e1c7477fea048624ec |
#
# This source file is part of appleseed.
# Visit http://appleseedhq.net/ for additional information and resources.
#
# This software is released under the MIT license.
#
# Copyright (c) 2019 Jonathan Dent, The appleseedhq Organization
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# ... | dictoon/blenderseed | translators/preview.py | Python | mit | 12,094 | [
"VisIt"
] | 1fc18e19a03fee59460f852706820b6356ee12b01aa3e8966ebab66fdfb44ae7 |
# ======================================================================
# USER-GFMD - Elastic half-space methods for LAMMPS
# https://github.com/Atomistica/user-gfmd
#
# Copyright (2011-2016,2021)
# Lars Pastewka <lars.pastewka@imtek.uni-freiburg>,
# Tristan A. Sharp and others.
# See the AUTHORS file in the top... | Atomistica/user-gfmd | tests/TEST_error_convergence_ft_four_layers_lj_cut_fd_single_layer_no_relax/eval.py | Python | gpl-2.0 | 9,946 | [
"LAMMPS"
] | d05669ec0e433ecd2869feebb69c5ec82d3214fded5174331f28a76dc17027e2 |
"""Structure optimization. """
from ase.optimize.optimize import NDPoly, polyfit
from ase.optimize.mdmin import MDMin
from ase.optimize.lbfgs import HessLBFGS, LineLBFGS
from ase.optimize.fire import FIRE
from ase.optimize.lbfgs import LBFGS, LBFGSLineSearch
from ase.optimize.bfgslinesearch import BFGSLineSearch
from ... | grhawk/ASE | tools/ase/optimize/__init__.py | Python | gpl-2.0 | 796 | [
"ASE"
] | efd54e1467f12d92d822c02771840f64f1b6a1618b08d0beb02b353bd5bf656d |
#!/usr/bin/env python
"""Copyright 2010 Phidgets Inc.
This work is licensed under the Creative Commons Attribution 2.5 Canada License.
To view a copy of this license, visit http://creativecommons.org/licenses/by/2.5/ca/
"""
__author__ = 'Adam Stelmack'
__version__ = '2.1.8'
__date__ = 'May 17 2010'
#Basi... | danielsuo/mobot | src/move/Python/TextLCD-simple.py | Python | mit | 6,000 | [
"VisIt"
] | 71e89352ce69706cce03bfaf4120e8e8e316556b6354944a25e4a62c7569d7d4 |
#! /usr/bin/env python
"""
Module with fake disk injection functions.
"""
__author__ = 'Julien Milli @ ESO, Valentin Christiaens @ ULg/UChile'
__all__ = ['cube_inject_fakedisk',
'cube_inject_trace']
import numpy as np
from scipy import signal
from ..preproc import cube_derotate, frame_shift
from ..var imp... | carlgogo/vip_exoplanets | vip_hci/metrics/fakedisk.py | Python | bsd-3-clause | 9,502 | [
"Gaussian"
] | 86c7bbd5372cba0445a921deea3f2c598fea0679e5103b00006f442a57e9646b |
# -*- coding: utf-8 -*-
"""This module contains functions to be called from console script entry points.
"""
# symbols which are imported by "from rmidb2.command import *"
__all__ = ['bootstrap', 'ConfigurationError', 'start']
import sys
import optparse
from os import getcwd
from os.path import dirname, exists, join... | edwardsnj/rmidb2 | rmidb2/command.py | Python | mit | 4,403 | [
"VisIt"
] | de5f0f6e2979a8b2f36d71dfd23061bc7ed4afacce359c9d3b1817f5b5e61345 |
import glob
import pandas as pd
import numpy as np
pd.set_option('display.max_columns', 50) # print all rows
import os
os.chdir("/gpfs/commons/home/biederstedte-934/evan_projects/correct_phylo_files")
normalB = glob.glob("binary_position_RRBS_normal_B_cell*")
mcell = glob.glob("binary_position_RRBS_NormalBCD19pCD27... | evanbiederstedt/RRBSfun | trees/chrom_scripts/total_chr15.py | Python | mit | 32,998 | [
"MCell"
] | 2a44cb7c9dd2a416111df9444ab0b3a9f23e3230f1725ed557bcbea4a5b51ba1 |
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