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#
# File : mkdir.py
# This file is part of RT-Thread RTOS
# COPYRIGHT (C) 2006 - 2018, RT-Thread Development Team
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of th... | onelife/rt-thread | tools/mkdist.py | Python | gpl-2.0 | 14,478 | [
"CDK"
] | 46bbd5f25a799e15c9288ea1282b42be96fe6688dc0a06b77ec8d97e8c112a8a |
import sys,os,unittest
from lammps import lammps, LMP_VAR_ATOM, LMP_STYLE_GLOBAL, LMP_TYPE_VECTOR
has_manybody=False
try:
machine=None
if 'LAMMPS_MACHINE_NAME' in os.environ:
machine=os.environ['LAMMPS_MACHINE_NAME']
lmp=lammps(name=machine)
has_manybody = lmp.has_style("pair","sw")
lmp.cl... | jeremiahyan/lammps | unittest/python/python-commands.py | Python | gpl-2.0 | 18,960 | [
"LAMMPS"
] | 5f893e6cc44a80f582eddaff3b2cdb5b3b8200da5f27e8ade290f52726d29886 |
#!/usr/bin/env python
import vtk
from vtk.test import Testing
from vtk.util.misc import vtkGetDataRoot
VTK_DATA_ROOT = vtkGetDataRoot()
# Create the RenderWindow, Renderer and both Actors
#
ren1 = vtk.vtkRenderer()
ren2 = vtk.vtkRenderer()
renWin = vtk.vtkRenderWindow()
renWin.SetMultiSamples(0)
renWin.AddRenderer(ren... | HopeFOAM/HopeFOAM | ThirdParty-0.1/ParaView-5.0.1/VTK/Filters/Core/Testing/Python/TestFlyingEdgesExtents.py | Python | gpl-3.0 | 3,378 | [
"VTK"
] | 57817dcbe1f626e22c18f78fe56d4632f2709e803c563b6548a55999af340113 |
#!/usr/bin/env python
from core import geo, pmap
import numpy as np
from datetime import timedelta, datetime
import glob
import os
from netcdf import netcdf as nc
from cache import Cache, Loader
from helpers import short
import logging
class Heliosat2(object):
def __init__(self, config, strategy_type):
... | ahMarrone/solar_radiation_model | models/heliosat.py | Python | mit | 6,738 | [
"NetCDF"
] | c6e76751f006c24d10a054080bfa6299b018e2e76ed98d78a7b697313023e7fd |
# encoding: utf-8
"""
Enable wxPython to be used interacive by setting PyOS_InputHook.
Authors: Robin Dunn, Brian Granger, Ondrej Certik
"""
#-----------------------------------------------------------------------------
# Copyright (C) 2008-2011 The IPython Development Team
#
# Distributed under the terms of the... | dannyperry571/theapprentice | script.module.pydevd/lib/pydev_ipython/inputhookwx.py | Python | gpl-2.0 | 6,095 | [
"Brian"
] | 9d658235262de7eb08aa1c8aa77440867a8ae75021b18db1afe9b59959826786 |
import datetime
import lxml.html
import os
import re
from collections import defaultdict
import scrapelib
from billy.scrape.utils import convert_pdf
from billy.scrape.bills import BillScraper, Bill
from billy.scrape.votes import Vote
motion_classifiers = {
'(Assembly|Senate)( substitute)? amendment': 'amendment'... | showerst/openstates | openstates/wi/bills.py | Python | gpl-3.0 | 13,639 | [
"VisIt"
] | c3fcc251e7515e04138a985838ba19fa53d6fa4ef5f3d72b772cb7bbdbdf088f |
"""Virtual Adversarial Ladder"""
import tensorflow as tf
from src.utils import count_trainable_params, preprocess, get_batch_ops
from src.conv import *
import tensorflow.contrib.layers as layers
import math
import numpy as np
VERBOSE = False
# -----------------------------
# -----------------------------
# LADDER CL... | sakishinoda/tf-ssl | vat_ladder/src/lva.py | Python | mit | 56,273 | [
"Gaussian"
] | 603a603a82cc96415ecbcbafb6598f1f5b0c6dcdea9e6532827695125488da6f |
#
# Copyright (C) 2008, Brian Tanner
#
#http://rl-glue-ext.googlecode.com/
#
# Licensed under the Apache License, Version 2.0 (the "License")
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless requi... | steckdenis/rlglue-py3 | tests/test_empty_experiment.py | Python | apache-2.0 | 3,128 | [
"Brian"
] | dad7b8ddba0379b7e37b30a84a44c002ea2f341528fe7361f312446229d6e2ef |
"""
This module implements the functionality to take any Python expression as a
string and fix all numbers and other things before evaluating it,
thus
1/2
returns
Integer(1)/Integer(2)
We use the Python ast module for that, which is in python2.6 and later. It is
well documented at docs.python.org.
Some tips to und... | GbalsaC/bitnamiP | venv/lib/python2.7/site-packages/sympy/parsing/ast_parser.py | Python | agpl-3.0 | 3,404 | [
"VisIt"
] | 27081e2d6cfe190504fa931b6a09879bdb6d3e83a8af23ebad040dd2c09333ea |
#!/usr/bin/env python
# Copyright 2014-2019 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | gkc1000/pyscf | pyscf/prop/hfc/__init__.py | Python | apache-2.0 | 767 | [
"PySCF"
] | 7d77581ea19a9ac72e523d5b597c5e2bbda6430c5d93145dcff134769cdd46e7 |
#!/usr/bin/env python3
import argparse
import errno
import logging
import os
import subprocess
def remove_pilon_from_fasta_headers(infile, outfile, number_of_pilons):
'''Each time you run pilon, it adds "_pilon" to the end of each
contig name. This makes a new file with them removed, and adds
".{number_o... | martinghunt/bioinf-scripts | python/pilon_iterative.py | Python | mit | 6,819 | [
"BWA"
] | 1ef862a962ae9f944ed7a374506ead72d9172b870b3293a48424228cf0b4a72d |
#!/usr/bin/env python3
#* This file is part of the MOOSE framework
#* https://www.mooseframework.org
#*
#* All rights reserved, see COPYRIGHT for full restrictions
#* https://github.com/idaholab/moose/blob/master/COPYRIGHT
#*
#* Licensed under LGPL 2.1, please see LICENSE for details
#* https://www.gnu.org/licenses/lgp... | harterj/moose | python/moosesyntax/test/test_nodes.py | Python | lgpl-2.1 | 6,602 | [
"MOOSE"
] | b477de9c03496790c04d8b753b9436f07f85ea1165efb79c46cc52e86e79b12f |
# -*- coding: utf-8 -*-
# The MIT License (MIT)
#
# Copyright (c) 2019, TU Wien
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
... | TUW-GEO/ecmwf_models | tests/tests_era5/test_era5_interface.py | Python | mit | 13,856 | [
"NetCDF"
] | 305343922465df3f724191fbac435900171de3fcb95db7400c1c44ed6b75c4cb |
# -*- coding: utf-8 -*-
import numpy as np
import parabem
from parabem.vtk_export import VtkWriter
from parabem import PanelVector2, Vector2, Panel2
from parabem.airfoil import Airfoil
from parabem.pan2d import NeumannDoublet0Case2 as Case
from parabem.utils import check_path
airfoil = Airfoil.vandevooren(tau=np.deg2... | booya-at/paraBEM | examples/vtk/vtk_airfoil_neumann.py | Python | gpl-3.0 | 1,590 | [
"VTK"
] | e57f5688076e546504b9620c3a597f4885396dbaaa966546da2e52418aa584cd |
"""Generate colored noise."""
from numpy import sqrt, newaxis
from numpy.fft import irfft, rfftfreq
from numpy.random import normal
from numpy import sum as npsum
def powerlaw_psd_gaussian(exponent, size, fmin=0):
"""Gaussian (1/f)**beta noise.
Based on the algorithm in:
Timmer, J. and Koenig, M.:
O... | felixpatzelt/colorednoise | colorednoise.py | Python | mit | 3,263 | [
"Gaussian"
] | 78ac3480670a45b719719639f7065a3474f1af8d450ec679e27fd28d66f73339 |
#Exercise 1.10: Evaluate a Gaussian Function
#Author: Andreas Solberg Sagen - University of Oslo
from math import sqrt, pi, exp #Importing functions from the math module.
def f(x, m, s):
return (1.0 / (sqrt(2 * pi) * s)) * exp(-1 / 2 * ((x-m) / s)**2)
m = 0; s = 2; x = 1 #defining our known variables
print(f(x,... | exTerEX/PrimeOnScientificProgramming | Chapter 1/gaussian1.py | Python | mit | 361 | [
"Gaussian"
] | d3587094b45fa70f6e31e7d752a0d9085bebdc706f968589126e3672dafdec0d |
""" TransformationAgent processes transformations found in the transformation database.
"""
import time
import Queue
import os
import datetime
import pickle
from DIRAC import S_OK, S_ERROR
from DIRAC.Core.Base.AgentModule import AgentModule
from DIRAC.Core.Utilities.ThreadPool import ThreadPool
from DIRAC.Core.Utili... | arrabito/DIRAC | TransformationSystem/Agent/TransformationAgent.py | Python | gpl-3.0 | 29,686 | [
"DIRAC"
] | 51a3ffdf3d9f050623bb073ad4d029382a5210b552eae609a47e27acf74ef90c |
# c: 07.05.2007, r: 25.06.2008
filename_mesh = 'database/phono/mesh_circ21.mesh'
dim = 2
field_1 = {
'name' : 'a_harmonic_field',
'dim' : (1,1),
'domain' : 'Omega',
'bases' : {'Omega' : '2_3_P1'}
}
variables = {
't': ('unknown field', 'a_harmonic_field', 0),
's': ('test field', 'a_harmonic... | certik/sfepy | tests/test_msm_laplace.py | Python | bsd-3-clause | 5,232 | [
"VTK"
] | 4ca49c96788906f8a17cc3627bba048ca58ccd98562ebc32a8f03f79a25d380c |
"""Music database connectivity and display."""
# Copyright (C) 2012 Stephen Fairchild (s-fairchild@users.sourceforge.net)
# (C) 2012 Brian Millham (bmillham@users.sourceforge.net)
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public L... | radiocicletta/idjc-x | python/songdb.py | Python | gpl-2.0 | 76,796 | [
"Brian"
] | f02d8666dd4e5a614cd3fbd5b0eb3631ac0b53abd266afcc69e68c47130264f5 |
"""
Linear filters.
"""
import numpy as np
import scipy.signal as sig
from compvis.imgproc.filters import kernels
def bilinear(img):
# Convert to numpy array if necessary
if not isinstance(img, np.ndarray): img = np.array(img)
return sig.convolve2d(img, kernels.KERNEL_BILINEAR, mode='full')
def gaussian... | pauljxtan/pystuff | pycompvis/compvis/imgproc/filters/linear.py | Python | mit | 2,520 | [
"Gaussian"
] | a4e26f6b0b992770c2073c9514291a68f126b12e9a8b7fe0ff3568adc512ef77 |
"""This demo program solves Poisson's equation
- div C grad u(x, y) = f(x, y)
on the unit square with source f given by
f(x, y) = 10*exp(-((x - 0.5)^2 + (y - 0.5)^2) / 0.02)
and boundary conditions given by
u(x, y) = 0 for x = 0 or x = 1
du/dn(x, y) = 0 for y = 0 or y = 1
The conductivity C is a sym... | alogg/dolfin | demo/undocumented/tensor-weighted-poisson/python/demo_tensor-weighted-poisson.py | Python | gpl-3.0 | 3,164 | [
"VTK"
] | 176bacf1954e6099d81e978c9b1ed7d7f0c8fcaea6f8545030f0f656c5f257e9 |
import os
import locale
from gi.repository import Gtk
from ConfigParser import ConfigParser
from widgets.settings_page import SettingsPage
class Column:
ACTIVE = 0
LOCATION = 1
NAME = 2
AUTHOR = 3
VERSION = 4
CONTACT = 5
SITE = 6
DESCRIPTION = 7
class Section:
NAME = 'Name'
DESCRIPTION = 'Description'
V... | cmallwitz/Sunflower | application/gui/preferences/plugins.py | Python | gpl-3.0 | 9,103 | [
"VisIt"
] | 3208654bd70b1aac891645d02f4328a1289bda8b1640bdc4c0df7887e58acd7d |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
from __future__ import division, unicode_literals, print_function
"""
Module implementing classes and functions to use Zeo++.
Zeo++ can be obtained from http://www.maciejharanczyk.info/Zeopp/
"""
from six.mov... | sonium0/pymatgen | pymatgen/io/zeo.py | Python | mit | 17,431 | [
"pymatgen"
] | b4566bf8ccfab861e6a9ebf6bea44f93b6ebfd6935d2d3a128ccec04cdf919d7 |
# = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
import numpy as np
import sys
import astropy.io.fits as afits
import collections
import tdose_utilities as tu
import tdose_extract_spectra as tes
import tdose_build_mock_cube as tbmc
import pdb
import scipy.ndi... | kasperschmidt/TDOSE | tdose_extract_spectra.py | Python | mit | 43,824 | [
"Gaussian"
] | f354b846ef1e8452260a937a3bc6f52a714650ae422c1bdc92f4d673a86e1bff |
from distutils.core import setup
import py2exe
import numpy
setup(console=['arcte.py'],
description='Model generator for 3D printed crystal structures, with braille features.',
license="GNU GENERAL PUBLIC LICENSE",
author='Jesse Smith',
author_email='jessesmith@my.unt.edu',
url='https://github.com/je... | jessedsmith/Arcte | setup.py | Python | gpl-3.0 | 1,310 | [
"CRYSTAL"
] | 03bd324eb485b8f89179ebf6174341f544d0223c4373a333d6902d9fb357ef69 |
# -*- coding: utf-8 -*-
"""
pygments.lexers.compiled
~~~~~~~~~~~~~~~~~~~~~~~~
Just export lexer classes previously contained in this module.
:copyright: Copyright 2006-2019 by the Pygments team, see AUTHORS.
:license: BSD, see LICENSE for details.
"""
from pygments.lexers.jvm import JavaLexer, Sc... | wakatime/wakatime | wakatime/packages/py27/pygments/lexers/compiled.py | Python | bsd-3-clause | 1,385 | [
"CRYSTAL"
] | 886c1590227e497a28bc77a03814a7386e75f211e40ee75e81bf7fa92fbcbd6d |
#!/usr/bin/env python
""" Converts between chromosome names. """
import sys
import argparse
from argparse import RawDescriptionHelpFormatter as Raw
import pkg_resources
import gzip
import pandas as pd
import pysam
import pybedtools
from Bio import SeqIO
def arguments():
""" Function to pull command line argument... | lcdb/lcdblib | lcdblib/utils/chrom_convert.py | Python | mit | 6,289 | [
"Biopython",
"pysam"
] | 46edb9ec02ba859442445d472465736e74a57cebc2e595d05a9d689b217bf532 |
import inspect
from typing import Callable, List, Union
import numpy as np
import tensorflow as tf
from odin.bay.helpers import kl_divergence
from tensorflow import Tensor
from tensorflow_probability.python.distributions import Distribution, Normal
from typing_extensions import Literal
__all__ = [
'disentangled_inf... | imito/odin | odin/bay/vi/losses.py | Python | mit | 10,177 | [
"Gaussian"
] | 4cf9f6459452ed8e45bb46e3599eeda87d5747fa20cda113c1eb67c2a38b3d43 |
#!/usr/bin/env python
from __future__ import print_function
import argparse
from collections import Counter
from datetime import datetime
import logging
import re, sys
import os, pycurl, tarfile, zipfile, gzip, shutil
from pkg_resources import resource_filename
from sistr.version import __version__
from sistr.src.bl... | peterk87/sistr_cmd | sistr/sistr_cmd.py | Python | apache-2.0 | 18,966 | [
"BLAST"
] | 18a8b5645f07c9f22106c1c3b67a462e33a80a20c0218f41c3d9fb017272a964 |
#!/usr/bin/env python
# -*-python-*-
#
# Copyright (C) 1999-2006 The ViewCVS Group. All Rights Reserved.
# Copyright (C) 2000 Curt Hagenlocher <curt@hagenlocher.org>
#
# By using this file, you agree to the terms and conditions set forth in
# the LICENSE.html file which can be found at the top level of the ViewVC
# dis... | foresthz/fusion5.1 | www/scm/viewvc/lib/vclib/ccvs/blame.py | Python | gpl-2.0 | 16,814 | [
"VisIt"
] | e6b73ca4d0d5b825a7dece7b810125d683320a36e1f9d6a07f3e28a359f10369 |
#!/usr/bin/env python
##############################################################################################
#
#
# regrid_emissions_N96e.py
#
#
# Requirements:
# Iris 1.10, time, cf_units, numpy
#
#
# This Python script has been written by N.L. Abraham as part of the UKCA Tutorials:
# http://www.ukca.ac.u... | acsis-project/emissions | emissions/python/timeseries_1950-2020/regrid_SO2_low_emissions_n96e_360d.py | Python | gpl-3.0 | 19,180 | [
"NetCDF"
] | a4d83802a7ca3b3061c441a7c1a1b228834e31af37df195b94b96c97ec045abc |
# -*- coding: utf-8 -*-
# Copyright © 2017, 2018, 2019, 2020 Tom Most <twm@freecog.net>
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) a... | twm/yarrharr | yarrharr/sanitize.py | Python | gpl-3.0 | 16,695 | [
"VisIt"
] | 8f4071394a7f3bed67fff8323c43637146e4392126cce2a65b624e523845be8c |
########################################################################
# File : CLI.py
# Author : Andrei Tsaregorodtsev
########################################################################
""" CLI is the base class for all the DIRAC consoles ( CLIs ). It contains
several utilities and signal handlers of ge... | andresailer/DIRAC | Core/Base/CLI.py | Python | gpl-3.0 | 3,625 | [
"DIRAC"
] | 91947cb4e339d75f75d2ef884177a52e0696dcd4b35ed0d4d418f476449ef20f |
import argparse
import numpy
import pysam
def Parser():
the_parser = argparse.ArgumentParser()
the_parser.add_argument('-bams', '--bams', dest='bams', required=True,
nargs='+', help='list of input BAM files')
the_parser.add_argument('-bed', '--bed', dest='bed', required=True,... | drosofff/tools-artbio | tools/probecoverage/multicov.py | Python | mit | 1,821 | [
"pysam"
] | 559ee1662597d8886263e292b05d14216deecce1c9eeb6a76a146154c0659234 |
import sys, os, time
import argparse
import tempfile,shutil
def parse_args(reference_dir):
parser = argparse.ArgumentParser()
requiredNamed = parser.add_argument_group('Required named arguments')
requiredNamed.add_argument('-f', '--forward', type=str, action='store... | namphuon/ViFi | scripts/run_vifi.py | Python | gpl-3.0 | 11,559 | [
"BWA"
] | 8ad3b42125f10194b4d3d9ff777fa81fdf79127b73dd22da958f2bc48a4d7974 |
#!/usr/bin/env python
import vtk
from vtk.test import Testing
from vtk.util.misc import vtkGetDataRoot
VTK_DATA_ROOT = vtkGetDataRoot()
# create a rendering window and renderer
ren1 = vtk.vtkRenderer()
ren1.SetBackground(0,0,0)
renWin = vtk.vtkRenderWindow()
renWin.AddRenderer(ren1)
renWin.SetSize(300,300)
... | hlzz/dotfiles | graphics/VTK-7.0.0/IO/EnSight/Testing/Python/EnSightIronProtASCII.py | Python | bsd-3-clause | 1,603 | [
"VTK"
] | 226900c2f1ade4f068d966c9a0cbbcf69acb463043fdb42d3d6838061f35f9f5 |
# !/usr/bin/env python
__author__ = 'NishantNath'
'''
Using : Python 2.7+ (backward compatibility exists for Python 3.x if separate environment created)
Required files : hdf5_getters.py, find_second_max_value.py
Required packages : numpy, pandas, matplotlib, sklearn, pickle
Steps:
1.
# Uses naive bayes gaussian me... | nishantnath/MusicPredictiveAnalysis_EE660_USCFall2015 | Code/Machine_Learning_Algos/10k_Tests/ml_classification_knn_training.py | Python | mit | 8,136 | [
"Gaussian"
] | ca75a8df92c756af322e0ce66fb866c353f9c75f5582347c3fa03f4485d68526 |
import numpy as np
from cogue.crystal.utility import klength2mesh
class ModeGruneisen:
def __init__(self,
phonopy_gruneisen,
distance=100):
self._phonopy_gruneisen = phonopy_gruneisen
self._phonon = self._phonopy_gruneisen.get_phonon()
self._lattice = np.ar... | atztogo/phonondb | phonondb/phonopy/gruneisen.py | Python | bsd-3-clause | 3,967 | [
"CRYSTAL",
"phonopy"
] | 91c57aef0d4c04a317008a5adc0216e768eb620b967ab0b89f4510c8af1e62fa |
"""
.. _statsrefmanual:
==========================================
Statistical functions (:mod:`scipy.stats`)
==========================================
.. currentmodule:: scipy.stats
This module contains a large number of probability distributions,
summary and frequency statistics, correlation functions and statist... | matthew-brett/scipy | scipy/stats/__init__.py | Python | bsd-3-clause | 12,864 | [
"Gaussian"
] | 5dfa7aa0bacb815e561dedeb53da84137a17ff23fc49d2ef9d01d0b163752fab |
"""
test for secure opendap support
"""
import tempfile
import os
import os.path as op
import shutil
from unittest import TestCase
import re
from pyesgf.logon import LogonManager, DAP_CONFIG_MARKER
from pyesgf.search import SearchConnection
from test.config import TEST_SERVICE
class TestOpendap(TestCase):
def s... | sterlingbaldwin/esgf-pyclient | test/test_opendap.py | Python | bsd-3-clause | 3,854 | [
"NetCDF"
] | e9b928d5a641a3293015b1245a8e84759446b2f86123a719234aa35bd4e9e4ef |
# Copyright 1999-2017. Parallels IP Holdings GmbH. All Rights Reserved.
#!@@PYTHON@@
#------------------------------------------------------------------------
# Copyright (c) 1998 by Total Control Software
# All Rights Reserved
#-----------------------------------------------------... | LFC7RED/TheRock | test/fcgi/fcgi.py | Python | mit | 15,059 | [
"TINKER"
] | d62c25d08764fb5cc4e37abf792145fffa3363698561aee5ab03553f8f708273 |
"""Each ElkM1 area will be created as a separate alarm_control_panel."""
from __future__ import annotations
from elkm1_lib.const import AlarmState, ArmedStatus, ArmLevel, ArmUpState
from elkm1_lib.util import username
import voluptuous as vol
from homeassistant.components.alarm_control_panel import (
ATTR_CHANGED... | rohitranjan1991/home-assistant | homeassistant/components/elkm1/alarm_control_panel.py | Python | mit | 10,092 | [
"Elk"
] | 2726d1991ff9d9129a95ff10c2b1dd80af8aa03929d47209b189e13d203c8b37 |
# coding=utf-8
"""
InaSAFE Disaster risk assessment tool developed by AusAid -
**IS Utilities implementation.**
Contact : ole.moller.nielsen@gmail.com
.. note:: This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Fre... | danylaksono/inasafe | safe_qgis/utilities/utilities.py | Python | gpl-3.0 | 26,209 | [
"VisIt"
] | cbb77ab7f5567c7698a6a338991b2d51ea18e851082b85b9eebc7f070510105d |
# Copyright (C) 2012,2013,2014,2015,2016
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the... | kkreis/espressopp | src/integrator/LangevinThermostat.py | Python | gpl-3.0 | 2,954 | [
"ESPResSo"
] | 9e65f4bcb9a0fae2da0720112e52a30a2aa645aea31d258b8afe0d72bd457331 |
from splinter import Browser
from pyvirtualdisplay import Display
from Adafruit_CharLCDPlate import Adafruit_CharLCDPlate
import time
import csv
# *** GLOBAL VARIABLES ***
btURLBASE = 'http://www.ctabustracker.com/bustime/eta/eta.jsp?id='
stops = ['5037','1646']
descriptions = [
"Downtown",
"University"
];
cstop... | bobthechemist/bustracker | bustracker.py | Python | gpl-2.0 | 3,603 | [
"VisIt"
] | 403afd0643faecdffdbb46ef83a22b5422e6fb902710ff4367014c1fdb20953f |
import numpy as np
import pytest
import vtk as _vtk
from pyvista import pyvista_ndarray
from pyvista import examples
from unittest import mock
def test_slices_are_associated():
dataset = examples.load_structured()
points = pyvista_ndarray(dataset.GetPoints().GetData(), dataset=dataset)
# check that slice... | akaszynski/vtkInterface | tests/test_pyvista_ndarray.py | Python | mit | 2,366 | [
"VTK"
] | bbc12f393adaa89e361362367cd134f749c94035b1336c545f26d15c85e0de85 |
from setuptools import setup
from setuptools import find_packages
import os
import zither
def read(*paths):
"""Build a file path from *paths* and return the contents."""
with open(os.path.join(*paths), 'r') as filename:
return filename.read()
setup(name='zither',
version=zither.__version__,
... | umich-brcf-bioinf/Zither | setup.py | Python | apache-2.0 | 1,668 | [
"pysam"
] | 8bec9713a0a394775b0ac77e39b80b7574479b8f03663a6876ef24a81ac3c5b0 |
# -*- coding: utf-8 -*-
# * Authors:
# * TJEBBES Gaston <g.t@majerti.fr>
# * Arezki Feth <f.a@majerti.fr>;
# * Miotte Julien <j.m@majerti.fr>;
import logging
import colander
from sqlalchemy import distinct
from sqlalchemy.orm import (
selectinload,
joinedload,
)
from autonomie.models.user.use... | CroissanceCommune/autonomie | autonomie/views/training/lists.py | Python | gpl-3.0 | 5,658 | [
"VisIt"
] | fcef627a2042855c879c446ea7dba11068da442d9a9118b5e0ad1722e08bdab6 |
import numpy as np
from scipy.stats import multivariate_normal
from sklearn import linear_model, mixture
class MVN( object ):
"""
linear algebra on gaussian multivariate
"""
def __init__( self, mean, cov, A=None ):
self.mean_ = mean
self.cov_ = cov
self.dim_ = mean.shape[ mean.ndim - 1 ]
if A is... | marcino239/gps | utils.py | Python | gpl-3.0 | 5,307 | [
"Gaussian"
] | 68b112aca7986d6efbcd3e0777a419ca9a05cc2d820d37d25ba6b72f8d0820d2 |
#!/usr/bin/env python
"""
Script that facilitates the modification of a element through the command line.
However, the usage of this script will set the element token to the command
issuer with a duration of 1 day.
"""
__RCSID__ = '$Id$'
from datetime import datetime, timedelta
from DIRAC import gLogger, exit as DIR... | fstagni/DIRAC | ResourceStatusSystem/scripts/dirac-rss-set-status.py | Python | gpl-3.0 | 8,092 | [
"DIRAC"
] | f17ce43f91042a8e322fc478878e6230b9ba0e0599bf8d1745cdb2d75d5ada9a |
#
# Copyright (C) 2007, Mark Lee
#
#http://rl-glue-ext.googlecode.com/
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required... | shiwalimohan/RLInfiniteMario | system/codecs/Python/examples/skeleton/skeleton_environment.py | Python | gpl-2.0 | 2,634 | [
"Brian"
] | 5dbe8648d49e5f28869e20c0fa0ca4d95e896ad20350476667dffcf80e16c220 |
"""Functions for generating artificial data.
For use in things like docstrings or to test HyperSpy functionalities.
"""
import numpy as np
from hyperspy import components1d, components2d
from hyperspy import signals
from hyperspy.misc.math_tools import check_random_state
from hyperspy.axes import UniformDataAxis
... | hyperspy/hyperspy | hyperspy/datasets/artificial_data.py | Python | gpl-3.0 | 14,755 | [
"Gaussian"
] | dc87e8b6b25f4125ff84e050b3e292244cd27100d46c0945c6321e624c7659dc |
# An example use of the /delta API call. Maintains a local cache of
# the App Folder's contents. Use the 'update' sub-command to update
# the local cache. Use the 'find' sub-command to search the local
# cache.
#
# Example usage:
#
# 1. Link to your Dropbox account
# > python search_cache.py link
#
# 2. Go to Dro... | calvdee/dropbox_python_sdk | example/search_cache.py | Python | mit | 9,122 | [
"VisIt"
] | 287a91d24eb4965a114c5b4ac1d6fcb8d6eba82d021a131eec508f15769db020 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""Starter data module"""
BANDS = {
'Spinal Tap': {
'David St. Hubbins': ['vocals', 'guitar'],
'Nigel Tufnel': ['guitar', 'vocals', 'bass', 'violin', 'harmonica',
'clarinet', 'keyboards', 'piano'],
'Derek Smalls': ['bas... | is210-2015-fall-02/is210-week-10-warmup | data.py | Python | mpl-2.0 | 1,956 | [
"Brian"
] | 78ece812254e4af56cc9d0b8c9a80851ea26ea6b65a1623e9d69d5a911cdd462 |
"""
Compute derived parameters from random samples from your chain.
We also histogram the masses
Will add histogram of initial phi vals as well
There is now an option to get derived with your chain, so that step can be eliminated.
(Derived params option in latest Mtheory Gaussian MCMC)
This is still useful to histogra... | DoddyPhysics/AxionNet | random_derived.py | Python | mit | 4,050 | [
"Gaussian"
] | 127fb2ef295379085ee01f8fb53d46a648abd46f7733d0dbd06a46e0d5d368ef |
#-*- coding: utf-8 -*-
#
# Copyright (c) 2004 Conectiva, Inc.
#
# Written by Anders F Bjorklund <afb@users.sourceforge.net>
#
# This file is part of Smart Package Manager.
#
# Smart Package Manager is free software; you can redistribute it and/or
# modify it under the terms of the GNU General Public License as publishe... | blackPantherOS/packagemanagement | smartpm/smart/interfaces/qt4/priorities.py | Python | apache-2.0 | 15,834 | [
"CRYSTAL"
] | 549f7bde7130d7aa7124d330875238c8af8cbd986fb0d2c19377931b05c7f8c1 |
"""
@name: PyHouse/src/communication/_test/test_ir_control.py
@author: D. Brian Kimmel
@contact: D.BrianKimmel@gmail.com
@copyright: (c) 2014-2018 by D. Brian Kimmel
@license: MIT License
@note: Created on Mar 22, 2014
@summary: Test
"""
__updated__ = '2019-10-08'
# Import system type stuff
impor... | DBrianKimmel/PyHouse | Project/src/Modules/Computer/Communication/_test/test_ir_control.py | Python | mit | 1,829 | [
"Brian"
] | 4c88c81832ad643014a61ce00f12891217ff4c3918f071152962e73896c6ef4e |
'''
A tool to annotate and print variants in tabular format.
Author: Khalid Mahmood (khalid.mahmood@unimelb.edu.au).
Copyright: 2015
'''
#!/usr/bin/python
import sys
import os
import argparse
import getopt
import vcf
import array
import pysam
#class Error(Exception):
# """Base-class for exceptions in this module.... | khalidm/VarPub | src/readExac.py | Python | gpl-2.0 | 8,379 | [
"pysam"
] | 17505b87f936724f5337b5251cd36fa47b7a5f7f9ce1e76272401ec9ded31fa3 |
# Copyright (C) 2013 Matthew C. Zwier and Lillian T. Chong
#
# This file is part of WESTPA.
#
# WESTPA is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any... | westpa/wwmgr | work_managers/__init__.py | Python | gpl-3.0 | 2,175 | [
"Brian"
] | 9c1ff26a758b78d868ca4d8c56f9acb2fb2df5f9515b013368b1a457637fd7d2 |
"""
=================================
Map data to a normal distribution
=================================
This example demonstrates the use of the Box-Cox and Yeo-Johnson transforms
through :class:`preprocessing.PowerTransformer` to map data from various
distributions to a normal distribution.
The power transform is ... | vortex-ape/scikit-learn | examples/preprocessing/plot_map_data_to_normal.py | Python | bsd-3-clause | 4,544 | [
"Gaussian"
] | c5bb699a026508829349d5d4dd453883ddc50aa1b473ce82d774173181073091 |
"""A module that provides Matlab like 3d visualization functionality.
The general idea is shamelessly stolen from the `high-level API`_
provided by Octaviz_. Some of the test cases and demos are also
translated from there!
.. _Octaviz: http://octaviz.sourceforge.net/
.. _high-level API: http://octaviz.sourceforge.net... | dmsurti/mayavi | tvtk/tools/mlab.py | Python | bsd-3-clause | 47,052 | [
"Mayavi",
"VTK"
] | 9c70c3df00b194f809902e2cb261da9b283692dcb41dc5ad2e8ef44cbf09f1a7 |
# drizzle/base.py
# Copyright (C) 2005-2014 the SQLAlchemy authors and contributors
# <see AUTHORS file>
# Copyright (C) 2010-2011 Monty Taylor <mordred@inaugust.com>
#
# This module is part of SQLAlchemy and is released under
# the MIT License: http://www.opensource.org/licenses/mit-license.php
"""
.. dialect:: dri... | ncdesouza/bookworm | env/lib/python2.7/site-packages/sqlalchemy/dialects/drizzle/base.py | Python | gpl-3.0 | 14,995 | [
"VisIt"
] | bb38cc6e1de9646ccfe08c02705a710a72530fc331b53593b653c98d904ba3cb |
from crystal_dashboard.dashboards.crystal.rings import tabs as rings_tabs
from django.utils.translation import ugettext_lazy as _
from horizon import tabs
class IndexView(tabs.TabbedTableView):
# A very simple class-based view...
tab_group_class = rings_tabs.RingsTabs
template_name = 'crystal/rings/index.... | Crystal-SDS/dashboard | crystal_dashboard/dashboards/crystal/rings/views.py | Python | gpl-3.0 | 490 | [
"CRYSTAL"
] | b5cbd37a61bd9e6c50d42687431fe73835063154fdd3132720893793042ee4de |
# Copyright (C) 2015-2017
# Jakub Krajniak (jkrajniak at gmail.com)
# Copyright (C) 2012,2013
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free soft... | MrTheodor/AdResSLab | adresslab/gromacs_topology.py | Python | gpl-3.0 | 49,194 | [
"ESPResSo",
"Gromacs"
] | 016fad7547d59c99783da5511d69c685fa305a162e7e67888715994954bb0109 |
# -*- coding: utf-8 -*-
# Copyright (C) 2004-2016 by
# Aric Hagberg <hagberg@lanl.gov>
# Dan Schult <dschult@colgate.edu>
# Pieter Swart <swart@lanl.gov>
# All rights reserved.
# BSD license.
#
# Authors: Aric Hagberg <hagberg@lanl.gov>
# Loïc Séguin-C. <loicseguin@gmail.com>
# Da... | NvanAdrichem/networkx | networkx/algorithms/shortest_paths/weighted.py | Python | bsd-3-clause | 53,946 | [
"VisIt"
] | efb38acbfcdca4fd7d54b59463b2d3f5f2bb39ccd33991e9d1d1c74090075a68 |
# Copyright (C) 2009-2014 CEA/DEN, EDF R&D
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version 2.1 of the License, or (at your option) any later version.
#
# This library ... | FedoraScientific/salome-hexablock | doc/pyplots/test_make_cylinder.py | Python | lgpl-2.1 | 1,379 | [
"VTK"
] | 427b49331c96ef742909a0e7951f6518b12ad971a3137b848f3ea87c3de1b8d8 |
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not u... | lewismc/climate | ocw/tests/test_utils.py | Python | apache-2.0 | 18,053 | [
"NetCDF"
] | 2ad0a4ad5f958dbee1887da65588cdf54089f984c97fd81dece3b2b16625f292 |
#=====================================================================================================================================
#Copyright
#=====================================================================================================================================
#Copyright (C) 2014 Alexander Blaessle... | alexblaessle/PyFRAP | pyfrp/gui/pyfrp_app.py | Python | gpl-3.0 | 93,739 | [
"VTK"
] | 669661fdcc03b2145cb70fccb6f0fcd8db91102780e1f0b50873a3771210f42e |
"""
cclib (http://cclib.sf.net) is (c) 2006, the cclib development team
and licensed under the LGPL (http://www.gnu.org/copyleft/lgpl.html).
"""
__revision__ = "$Revision: 733 $"
import logging
import sys
class Method(object):
"""Abstract class for logfile objects.
Subclasses defined by cclib:
Dens... | faribas/RMG-Py | external/cclib/method/calculationmethod.py | Python | mit | 1,252 | [
"cclib"
] | 9f16c28440ba3fff35c7229af5b87aa95542c23f54d018314e625e565f2960a4 |
#!/usr/bin/env python
# Copyright 2014-2018 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | gkc1000/pyscf | pyscf/cc/test/test_h2o.py | Python | apache-2.0 | 8,381 | [
"PySCF"
] | 0257baca855e567ad89f04651211a8b8a269c9c00610383a5b6bf6a108c06149 |
# pyshyacc.py - PLY grammar definition for pysh
#
# Copyright 2007 Patrick Mezard
#
# This software may be used and distributed according to the terms
# of the GNU General Public License, incorporated herein by reference.
"""PLY grammar file.
"""
import sys
import pyshlex
tokens = pyshlex.tokens
from ply import yacc... | rphillips/bitbake | lib/bb/pysh/pyshyacc.py | Python | gpl-2.0 | 24,146 | [
"VisIt"
] | a449ccd26b6b6b116fa59460cb1e6fe577b485cf455a691377b9360e48791589 |
##############################################################################
# MDTraj: A Python Library for Loading, Saving, and Manipulating
# Molecular Dynamics Trajectories.
# Copyright 2012-2013 Stanford University and the Authors
#
# Authors: Kyle A. Beauchamp
# Contributors: Robert McGibbon, John D. Cho... | rmcgibbo/mdtraj | mdtraj/formats/mol2.py | Python | lgpl-2.1 | 9,937 | [
"MDTraj",
"OpenMM"
] | c05c21c9493e72b32bdcae2120585d92dba6835d9b2d39847cec0fd721749bd1 |
#!/usr/bin/env python
# -*- coding: UTF-8 -*-
import os
import re
import webapp2
import jinja2
import logging
import StringIO
import json
from apirdflib import load_graph, getNss, getRevNss
from markupsafe import Markup, escape # https://pypi.python.org/pypi/MarkupSafe
import parsers
import threading
import itertool... | lanthaler/schemaorg | sdoapp.py | Python | apache-2.0 | 99,524 | [
"VisIt"
] | 1076d5bad2b4bd4ad09a3c9df9efd825f9e3406c85e893b4264be31974ce01b6 |
"""
This is only meant to add docs to objects defined in C-extension modules.
The purpose is to allow easier editing of the docstrings without
requiring a re-compile.
NOTE: Many of the methods of ndarray have corresponding functions.
If you update these docstrings, please keep also the ones in
core/fromnum... | kiwifb/numpy | numpy/add_newdocs.py | Python | bsd-3-clause | 224,419 | [
"Brian"
] | 45c45365b65fa6229e605265ea79a220ec64b6ec851de680074dc260d73e65e8 |
########################################################################
# $HeadURL $
# File: FTSAgent.py
# Author: Krzysztof.Ciba@NOSPAMgmail.com
# Date: 2013/05/31 10:00:13
########################################################################
""" :mod: FTSAgent
==============
.. module: FTSAgent
:syno... | Sbalbp/DIRAC | DataManagementSystem/Agent/FTSAgent.py | Python | gpl-3.0 | 46,989 | [
"DIRAC"
] | 96feae511f31c4f9b32ac8c49074ddb84970fb0fd28762f99679800b01ea18f0 |
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
import os
import logging
from math import ceil
import sys
import numpy as np
import tensorflow as tf
VGG_MEAN = [103.939, 116.779, 123.68]
class FCN32VGG:
def __init__(self, vgg16_npy_path=None):
... | jpapon/minimal_ros_nodes | cnn_classifier/src/cnn_classifier/tensorflow_fcn/fcn32_vgg.py | Python | bsd-3-clause | 15,627 | [
"Gaussian"
] | 4e71bbc445fe25f60b19dc79426b7a05406cad5d41603a91d00be7fc95155960 |
#! /usr/bin/env python3
"""Create a media website"""
import media
import fresh_tomatoes
def main():
# Create
grand_budapest_hotel = media.Movie(
"The Grand Budapest Hotel",
"The adventures of Gustave H, a legendary concierge at The \
Grand Budapest Hotel",
"https://upload.wik... | avijaira/udacity | full-stack-web-developer/p1-movie-trailer-website/entertainment_center.py | Python | gpl-3.0 | 2,210 | [
"Jaguar"
] | 1b31b4a5b804f606d7fe0293caee09574d880d80b8f6d9f5a3440f17a1c934f0 |
# -*- coding: utf-8 -*-
#
# ODDT documentation build configuration file, created by
# sphinx-quickstart on Mon Aug 25 13:49:30 2014.
#
# This file is execfile()d with the current directory set to its
# containing dir.
#
# Note that not all possible configuration values are present in this
# autogenerated file.
#
# All ... | oddt/oddt | docs/conf.py | Python | bsd-3-clause | 12,245 | [
"Pybel",
"RDKit"
] | b44df46e31cb368b6479c3927395d2e00de7fd42ed8725a1ff5de1960c43f8d2 |
import matplotlib.pyplot as plt
import numpy as np
from numpy.linalg import det, pinv
import scipy.io as sio
def visualize_data(X, title):
x1, x2 = X.T
plt.plot(x1, x2, 'bx')
plt.xlabel('Latency (ms)')
plt.ylabel('Throughput (mb/s)')
plt.xlim([0, 30])
plt.ylim([0, 30])
plt.tit... | mlyundin/Machine-Learning | ex8/ex8.py | Python | mit | 3,091 | [
"Gaussian"
] | fa2cd43ef72c15ed6a593539b36a13d56d96871ce8a96ea152128ba4698b8c11 |
"""
Helpers functions for the euxfel_h5tools package.
Copyright (c) 2017, European X-Ray Free-Electron Laser Facility GmbH
All rights reserved.
You should have received a copy of the 3-Clause BSD License along with this
program. If not, see <https://opensource.org/licenses/BSD-3-Clause>
"""
import h5py
import numpy ... | European-XFEL/h5tools-py | karabo_data/utils.py | Python | bsd-3-clause | 3,862 | [
"VisIt"
] | a9860830ab7ebf889a192a572077abf1585a745b7015df7541e775b9acf10be6 |
import os
import sys
from math import floor
g2xpl_16_prefix=''
g2xpl_16_suffix=''
Ortho4XP_dir = '..' if getattr(sys,'frozen',False) else '.'
Preview_dir = os.path.join(Ortho4XP_dir, 'Previews')
Provider_dir = os.path.join(Ortho4XP_dir, 'Providers')
Extent_dir = os.path.join(Ortho4XP_dir, 'Extents')
Filter... | oscarpilote/Ortho4XP | src/O4_File_Names.py | Python | gpl-3.0 | 10,210 | [
"ADF"
] | 7e56bd6ff9e2391d30b12528982cd9bc9fe037e49d465e5015fc7bd29655d9e5 |
# gaussian filter
import numpy as np
import scipy.ndimage as ndi
import matplotlib.pyplot as plt
import time
def grid_density_gaussian_filter(x0, y0, x1, y1, w, h, data):
kx = (w - 1) / (x1 - x0)
ky = (h - 1) / (y1 - y0)
r = 20
border = r
imgw = (w + 2 * border)
imgh = (h + 2 * border)
img ... | joernleu/Pythorient | src/point_densities.py | Python | mit | 2,755 | [
"Gaussian"
] | 3ec7c2be1613dac00d9041d1085ecd35d2cb08501a331f3fd8ed787a75c2c112 |
from datetime import datetime
from glob import glob
import math
import os
from pathlib import Path
import subprocess
import shutil
from string import Template
import sys
from uuid import uuid4
import numpy as np
from htsohm.simulation.raspa import write_mol_file, write_mixing_rules
from htsohm.simulation.raspa import... | WilmerLab/HTSOHM-dev | htsohm/simulation/simulate/gas_loading.py | Python | mit | 9,888 | [
"RASPA",
"VTK"
] | 7201ff0f92066d78cd3b86ed7205e14c437aaa27e4b21b2dc9f914f7d5ea0db6 |
from __future__ import print_function, division, absolute_import
import errno
import multiprocessing
import os
import platform
import shutil
import subprocess
import sys
import threading
import warnings
import inspect
import pickle
import weakref
from itertools import chain
try:
import jinja2
except ImportError:
... | jriehl/numba | numba/tests/test_dispatcher.py | Python | bsd-2-clause | 66,574 | [
"VisIt"
] | deeb0d7c0e85f56067562f0ea8f8339f937b312a1ce92139b53b290d9720d583 |
#!/usr/bin/env python
import vtk
from vtk.test import Testing
from vtk.util.misc import vtkGetDataRoot
VTK_DATA_ROOT = vtkGetDataRoot()
# Create the RenderWindow, Renderer and both Actors
ren1 = vtk.vtkRenderer()
renWin = vtk.vtkRenderWindow()
renWin.AddRenderer(ren1)
iren = vtk.vtkRenderWindowInteractor()
iren.SetRen... | HopeFOAM/HopeFOAM | ThirdParty-0.1/ParaView-5.0.1/VTK/Rendering/Core/Testing/Python/TestOnePoint.py | Python | gpl-3.0 | 829 | [
"VTK"
] | c97ed8030029519562216b86dffff84c9b0141d1509e11527e2ee0f77522faa5 |
# Copyright (C) 2012,2013
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of t... | BackupTheBerlios/espressopp | src/integrator/BerendsenThermostat.py | Python | gpl-3.0 | 3,826 | [
"ESPResSo"
] | dc564454a1928282aad58ee1b8dc76958cba2238eb8bda30daef98dcdaa6ca56 |
#!/usr/bin/env python
# coding=utf-8
# ly2video - generate performances video from LilyPond source files
# Copyright (C) 2012 Jiri "FireTight" Szabo
# Copyright (C) 2012 Adam Spiers
# Copyright (C) 2014 Emmanuel Leguy
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the ... | algomus/ly2video | synchro.py | Python | gpl-3.0 | 8,080 | [
"VisIt"
] | 8ff7809dc7d0a6a06850d314f3ace94513ffc24c4cb27247b67ac22c8cfd583c |
"""
PySCeS - Python Simulator for Cellular Systems (http://pysces.sourceforge.net)
Copyright (C) 2004-2020 B.G. Olivier, J.M. Rohwer, J.-H.S Hofmeyr all rights reserved,
Brett G. Olivier (bgoli@users.sourceforge.net)
Triple-J Group for Molecular Cell Physiology
Stellenbosch University, South Africa.
Permission to us... | bgoli/pysces | pysces/PyscesModel.py | Python | bsd-3-clause | 357,151 | [
"ORCA",
"PySCeS"
] | 2f91f51ce81d607077d469ac6efa73c5e4312a7f499f5e719448d2b66554be45 |
# Copyright 2012, 2013 The GalSim developers:
# https://github.com/GalSim-developers
#
# This file is part of GalSim: The modular galaxy image simulation toolkit.
#
# GalSim is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software... | mardom/GalSim | tests/test_hsm.py | Python | gpl-3.0 | 31,170 | [
"Galaxy",
"Gaussian"
] | a88510d193d5bccfc7200d9e6168bff76635ccc05efae1094135c229cfe453ef |
from numba.tracing import trace
from numba.errors import deprecated, NumbaDeprecationWarning
import warnings
import sys
import numpy as np
def _o2s(dtype, shape, order):
# convert order parameter to strides
if dtype is None or shape is None or order is None:
return None
if order == 'F':
... | jriehl/numba | numba/smartarray.py | Python | bsd-2-clause | 8,048 | [
"VisIt"
] | f68b67c8283d3218140846238646bcb90925f2ac133d4343d3d3d8cc40137a04 |
#!/usr/bin/env python3
# THIS FILE IS PART OF THE CYLC SUITE ENGINE.
# Copyright (C) 2008-2019 NIWA & British Crown (Met Office) & Contributors.
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation... | trwhitcomb/cylc | cylc/flow/tests/parsec/test_validate.py | Python | gpl-3.0 | 22,756 | [
"Galaxy"
] | de76f489b7678bad8bb813066b25a8c6f0e3ced18e27fbf462284a1452884d8c |
#
# Copyright (c) 2017 nexB Inc. and others. All rights reserved.
# http://nexb.com and https://github.com/nexB/scancode-toolkit/
# The ScanCode software is licensed under the Apache License version 2.0.
# Data generated with ScanCode require an acknowledgment.
# ScanCode is a trademark of nexB Inc.
#
# You may not use... | yashdsaraf/scancode-toolkit | tests/formattedcode/test_format_spdx.py | Python | apache-2.0 | 9,651 | [
"VisIt"
] | 8239a67dff0007b9608ff774504a160115dd68d92a2b2924145a9c8f7bd4fe2c |
# -*- coding: utf-8 -*-
#!/usr/bin/env python
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2000-2007 Donald N. Allingham
# Copyright (C) 2007 Johan Gonqvist <johan.gronqvist@gmail.com>
# Copyright (C) 2007-2009 Gary Burton <gary.burton@zen.co.uk>
# Copyright (C) 2007-2009 Stephane Charet... | Nick-Hall/gramps | gramps/plugins/webreport/person.py | Python | gpl-2.0 | 97,074 | [
"Brian"
] | 490801cd273e6b97475f9ed655386d6c619753b080c0cc659d2fed76f9e7587a |
"""Unit tests for testing support
"""
import logging
import unittest
import numpy
from astropy import units as u
from astropy.coordinates import SkyCoord
import matplotlib.pyplot as plt
from data_models.polarisation import PolarisationFrame
from processing_components.image.operations import export_image_to_fits,... | SKA-ScienceDataProcessor/algorithm-reference-library | tests/processing_components/test_primary_beam_illumination.py | Python | apache-2.0 | 3,329 | [
"Gaussian"
] | 21266d94f80c630c1af9e64bd43a15d3d798b26ea202f99724da563f9595fb20 |
########################################################################
# $HeadURL$
########################################################################
""" DIRAC FileCatalog Security Manager mix-in class
"""
__RCSID__ = "$Id$"
import os
from DIRAC import S_OK, S_ERROR
from DIRAC.Core.Security.Properties import ... | miloszz/DIRAC | DataManagementSystem/DB/FileCatalogComponents/SecurityManager.py | Python | gpl-3.0 | 8,398 | [
"DIRAC"
] | 7483b8990def07c8b7a0f3c5e5f94475b8e463f5f814084b97c2e7d2ed3ff37d |
# -*- coding: utf-8 -*-
"""
.. _tut-artifact-ica:
Repairing artifacts with ICA
============================
This tutorial covers the basics of independent components analysis (ICA) and
shows how ICA can be used for artifact repair; an extended example illustrates
repair of ocular and heartbeat artifacts.
.. contents... | cjayb/mne-python | tutorials/preprocessing/plot_40_artifact_correction_ica.py | Python | bsd-3-clause | 30,105 | [
"Gaussian"
] | 6c91bf04cc20e4cac770126744bbe1f195197577149bd938e8d848ef0ded40ca |
# vim:set et sts=4 sw=4:
#
# ibus - The Input Bus
#
# Copyright(c) 2007-2008 Huang Peng <shawn.p.huang@gmail.com>
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version 2 of t... | luoxsbupt/ibus | ui/gtk/candidatepanel.py | Python | lgpl-2.1 | 19,699 | [
"FLEUR"
] | b65348bf228db4ee5b3e2ed456a2bf259e11689acbcb4b21795dcb9bed649027 |
#!/usr/bin/env drgn
#
# Copyright (C) 2019 Tejun Heo <tj@kernel.org>
# Copyright (C) 2019 Facebook
desc = """
This is a drgn script to monitor the blk-iocost cgroup controller.
See the comment at the top of block/blk-iocost.c for more details.
For drgn, visit https://github.com/osandov/drgn.
"""
import sys
import re
... | skalk/linux | tools/cgroup/iocost_monitor.py | Python | gpl-2.0 | 10,093 | [
"VisIt"
] | 804d47904c74379a12dd13e82f09ceb4c7bb3ffd1a9b7b124d56eaff7e0e3c15 |
# Copyright 2012 by Wibowo Arindrarto. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
"""Bio.SearchIO abstract base parser for Exonerate standard output format."""
import sys
... | Ambuj-UF/ConCat-1.0 | src/Utils/Bio/SearchIO/ExonerateIO/_base.py | Python | gpl-2.0 | 16,510 | [
"Biopython"
] | 0b71f73dfaebe5c49c65e7e3bc8a58402264bdc20ed22061a82749720e4084c6 |
# Purpose: put together a data table with the fiducial parameters for
# the DEGAS sample.
# Base material:
# -- z0mgs data table from Leroy et al. 2019 (2019 ApJS 244 24)
# -- gal_base from Adam Leroy (private communication)
# -- gal_base_local from Adam Leroy (private communication)
# -- deg... | low-sky/degas | scripts/get_fid_params.py | Python | gpl-3.0 | 5,427 | [
"Galaxy"
] | ddbb686e8623e97cd28c4ac3f491710cd2354f64d3402f05d44165ee0bd70d21 |
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