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|---|---|---|---|---|---|---|---|
#
# Copyright 2016 The BigDL Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in ... | intel-analytics/BigDL | python/chronos/test/bigdl/chronos/data/utils/test_feature.py | Python | apache-2.0 | 4,619 | [
"ORCA"
] | 1c58405a3a4b935322f0613b58f3c701d1b94b05996e9253215f08128bcf4b80 |
#
# QAPI visitor generator
#
# Copyright IBM, Corp. 2011
# Copyright (C) 2014-2016 Red Hat, Inc.
#
# Authors:
# Anthony Liguori <aliguori@us.ibm.com>
# Michael Roth <mdroth@linux.vnet.ibm.com>
# Markus Armbruster <armbru@redhat.com>
#
# This work is licensed under the terms of the GNU GPL, version 2.
# See the CO... | gongleiarei/qemu | scripts/qapi-visit.py | Python | gpl-2.0 | 10,482 | [
"VisIt"
] | 17af0cafc0b2e4dfc630b3dcd8c901472b2c5b3c38d8844ed321057c08e26479 |
# (c) 2012-2014, Michael DeHaan <michael.dehaan@gmail.com>
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) an... | amousset/ansible | lib/ansible/constants.py | Python | gpl-3.0 | 17,103 | [
"Galaxy"
] | 13eaa87e28e57306b7e482b8d68ded8df31807493e7eed962a124f3f00b2f002 |
from datetime import tzinfo, timedelta, datetime
ZERO = timedelta(0)
HOUR = timedelta(hours=1)
# A UTC class.
class UTC(tzinfo):
"""UTC"""
def utcoffset(self, dt):
return ZERO
def tzname(self, dt):
return "UTC"
def dst(self, dt):
return ZERO
utc = UTC()
# A class building... | ArduinoHannover/FlipDotWorker | timezone.py | Python | gpl-3.0 | 5,060 | [
"VisIt"
] | 23f33d3d79549d3476b8af4968db57a3dd28ce24d735f56cd4aec5af8b86fe2e |
# Licensed under an MIT open source license - see LICENSE
import numpy as np
from astropy.modeling.models import Gaussian2D, Const2D, Gaussian1D, Const1D
from astropy.utils import NumpyRNGContext
# Define ways to make 1D and 2D profiles (typically Gaussian for ease)
def twoD_gaussian(shape=(201, 201), x_std=10., y_s... | e-koch/TurbuStat | turbustat/tests/generate_test_images.py | Python | mit | 1,400 | [
"Gaussian"
] | 48aac6614bfbad0948352ff18a549067badcb981a67c1f9013206c45303643e2 |
"""This module contains all of the CFG nodes types."""
from collections import namedtuple
from ..helper_visitors import LabelVisitor
ControlFlowNode = namedtuple(
'ControlFlowNode',
(
'test',
'last_nodes',
'break_statements'
)
)
class IgnoredNode():
"""Ignored Node sent from... | python-security/pyt | pyt/core/node_types.py | Python | gpl-2.0 | 9,684 | [
"VisIt"
] | e10f67a755e2700eeafe3c495e38c7f31dba7bef66aebe363fcf5058d352d02c |
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
#
# LAMMPS documentation build configuration file, created by
# sphinx-quickstart on Sat Sep 6 14:20:08 2014.
#
# This file is execfile()d with the current directory set to its
# containing dir.
#
# Note that not all possible configuration values are present in this
# aut... | zimmermant/dlvo_lammps | doc/utils/sphinx-config/conf.py | Python | gpl-2.0 | 8,669 | [
"LAMMPS"
] | 07584b6b19a0e217833ab072097084db63869acc18848c563025ebc3e9e6f7bf |
"""
Gaussian-process factor analysis (GPFA) is a dimensionality reduction method
:cite:`gpfa-Yu2008_1881` for neural trajectory visualization of parallel spike
trains. GPFA applies factor analysis (FA) to time-binned spike count data to
reduce the dimensionality and at the same time smoothes the resulting
low-dimension... | mdenker/elephant | elephant/gpfa/gpfa.py | Python | bsd-3-clause | 19,302 | [
"Gaussian",
"NEURON"
] | 8b02ac681db05b1435f6be4c747eb205d74348b6a9ee0d13458c2d9501f34c24 |
#!/usr/bin/env python
"""Simple example of publish/subscribe illustrating topics.
Publisher and subscriber can be started in any order, though if publisher
starts first, any messages sent before subscriber starts are lost. More than
one subscriber can listen, and they can listen to different topics.
Topic filtering... | mgadi/naemonbox | sources/psdash/pyzmq-13.1.0/examples/pubsub/topics_sub.py | Python | gpl-2.0 | 1,661 | [
"Brian"
] | 2ea930ea66e56dd089a385670d5c010f6a09cfab60a535f46b80fce436705481 |
import corner
import numpy as np
import seaborn as sns
import pandas as pd
import matplotlib.pyplot as plt
from matplotlib import gridspec
from matplotlib.colors import Normalize
from matplotlib.lines import Line2D
import miscellaneous as msc
import stats as st
import io_grb_pop as io
from io_grb_pop import root_dir
fr... | JPalmerio/GRB_population_code | grbpop/plotting_functions.py | Python | gpl-3.0 | 35,525 | [
"Gaussian"
] | b0685a0a15c5975712a698623348ea86183c9c837e75733c9e68103e52ef7c45 |
#!/usr/bin/env python
import os
import VG
import AS
import sys
import Prt
import Spec
import util as u
import numpy as np
import parseqm as pq
import argparse as arg
au2ang = 0.5291771
def options():
'''Defines the options of the script.'''
parser = arg.ArgumentParser(description='Normal Modes Analysis',
... | dpadula85/VAISD | stable/VAISD.py | Python | gpl-3.0 | 9,186 | [
"Gaussian"
] | 9c9b44852d7ab0b0a6094c6089922e972d0cc5f7d0229dccbb2e5ba1aafe7793 |
'''Some gromacs utilities'''
from __future__ import absolute_import
import os
import shutil
import subprocess
import logging
import fcntl
import time
from IPython.display import display
from ipywidgets.widgets import Textarea
from chemlab.io import datafile
from chemlab.md.simulation import to_mdp
from chemlab.md.pot... | chemlab/chemlab | chemlab/contrib/gromacs.py | Python | gpl-3.0 | 5,744 | [
"Gromacs"
] | d75d8a81328baf065eacbb5c29870cd6b11cfc13ab89e762586783d1eedc5484 |
# -*- Mode: python; tab-width: 4; indent-tabs-mode:nil; coding:utf-8 -*-
# vim: tabstop=4 expandtab shiftwidth=4 softtabstop=4
#
# MDAnalysis --- http://www.mdanalysis.org
# Copyright (c) 2006-2016 The MDAnalysis Development Team and contributors
# (see the file AUTHORS for the full list of names)
#
# Released under t... | alejob/mdanalysis | package/MDAnalysis/analysis/hbonds/__init__.py | Python | gpl-2.0 | 1,184 | [
"MDAnalysis"
] | a8c7ba944fb86b5602e6971e83c3c9730ebe3dad53a057017be336da41f0077c |
from __future__ import unicode_literals
VENDORS = {
0x0000: 'Ericsson Technology Licensing',
0x0001: 'Nokia Mobile Phones',
0x0002: 'Intel Corp.',
0x0003: 'IBM Corp.',
0x0004: 'Toshiba Corp.',
0x0005: '3Com',
0x0006: 'Microsoft',
0x0007: 'Lucent',
0x0008: 'Motorola',
0x0009: 'In... | liamw9534/bt-manager | bt_manager/vendors.py | Python | gpl-3.0 | 11,603 | [
"CRYSTAL"
] | 5178bb7c5b6750bcd1bd709e81eb5b7a150cc81eac138388c63bf19b4ca15004 |
# -*- coding: utf-8 -*-
"""
Neural Network
Classes:
- Neuron: where all the calculations are done
- Layer: facilitates communication between the neuron and the network
- NNetwork: performs higher level commands integral to the neural network
Author: Riaan Zoetmulder
assisted by: Christina Zavou
"""
import numpy as ... | DavidZomerdijk/play_notebook | NeuralNetwork.py | Python | mit | 7,882 | [
"NEURON"
] | a37ae4e2d537483adf6dc44a28c08fd2a366fb7bd4f20d79236ebf404387fc0b |
# -*- coding: utf-8 -*-
# Authors: Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Matti Hamalainen <msh@nmr.mgh.harvard.edu>
# Denis Engemann <denis.engemann@gmail.com>
# Andrew Dykstra <andrew.r.dykstra@gmail.com>
# Mads Jensen <mje.mads@gmail.com>
#
# License: BSD (... | alexandrebarachant/mne-python | mne/evoked.py | Python | bsd-3-clause | 68,173 | [
"Gaussian",
"Mayavi"
] | 19b65122c0c519d3792513f20232fb78b5e02c031002a954170778c7d92ac67c |
"""
Courseware views functions
"""
import logging
import urllib
import json
import cgi
from datetime import datetime
from collections import defaultdict
from django.utils import translation
from django.utils.translation import ugettext as _
from django.utils.translation import ungettext
from django.conf import setti... | antonve/s4-project-mooc | lms/djangoapps/courseware/views.py | Python | agpl-3.0 | 55,280 | [
"VisIt"
] | 927ebf7bb7cf822207be413ca8358b10a6292a4b2e67e5afd406efab086d5166 |
tests=[
("python","testDistGeom.py",{}),
]
longTests=[]
if __name__=='__main__':
import sys
from rdkit import TestRunner
failed,tests = TestRunner.RunScript('test_list.py',0,1)
sys.exit(len(failed))
| soerendip42/rdkit | Code/GraphMol/DistGeomHelpers/Wrap/test_list.py | Python | bsd-3-clause | 218 | [
"RDKit"
] | 262555e267e01bfeab3b0e4c9013ceee2f96c50a1968355768afae4fb16fff91 |
#!/usr/bin/env python
# Copyright 2014-2018 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | gkc1000/pyscf | pyscf/lo/nao.py | Python | apache-2.0 | 9,507 | [
"PySCF"
] | a4050a607c719273a18b7789a654cde4de2ee9e4f26fe88ce4c81e8c9e4c4edb |
# Copyright (c) 2001, Stanford University
# All rights reserved.
#
# See the file LICENSE.txt for information on redistributing this software.
#
# Authors:
# Brian Paul
""" lightning2_template.py
Template for setting up Lightning-2 (tile-reassembly) configurations.
"""
# Known issues:
# 1. Tiles must all be sa... | excid3/chromium | mothership/tools/reassembly_template.py | Python | bsd-3-clause | 42,823 | [
"Brian"
] | c98d21212db0d909df63b63ea9aab41bde27622d2e67564126fcfedf28e78a91 |
#!/usr/bin/env python
# Copyright 2014-2019 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | sunqm/pyscf | pyscf/lo/pipek.py | Python | apache-2.0 | 11,899 | [
"PySCF"
] | de27ff3713a8e9fee9b9006391869036fd7056f015b5d734ad2cbf8d5bdc06f6 |
# coding=utf-8
"""
install_examples.py
Dialogs that installs scripts to a desired directory. Simple front end to
sfc_models.examples.install_example_scripts
Migrated to sfc_models.examples
License/Disclaimer
------------------
Copyright 2017 Brian Romanchuk
Licensed under the Apache License, Version 2.0 (the "Lic... | brianr747/SFC_models | sfc_models/examples/install_examples.py | Python | apache-2.0 | 2,223 | [
"Brian"
] | df5077a682bebf3fa9c159a195336e86f0263a247c389acabce4d260ef079879 |
__author__ = 'noe'
import numpy as _np
def _guess_model_type(observations):
""" Suggests a HMM model type based on the observation data
Uses simple rules in order to decide which HMM model type makes sense based on observation data.
If observations consist of arrays/lists of integer numbers (irrespective... | bhmm/legacy-bhmm-force-spectroscopy-manuscript | bhmm/api.py | Python | lgpl-3.0 | 11,447 | [
"Gaussian"
] | 2cd6c7d5a2a847173ac5a3b94f52a9db1402163b13d20f5d55ed0b92c45db8d0 |
###########################################################################
# (C) 2016 Elettra - Sincrotrone Trieste S.C.p.A.. All rights reserved. #
# #
# #
# This file is ... | ElettraSciComp/STP-Core | STP-Core/reconstruct/rec_astra.py | Python | gpl-3.0 | 6,260 | [
"Gaussian"
] | e47101c185b66323b13616fb07c52bbab61c6224821034c144a9008ab02e540c |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
This module implements input and output processing from Nwchem.
2015/09/21 - Xin Chen (chenxin13@mails.tsinghua.edu.cn):
NwOutput will read new kinds of data:
1. normal hessian matrix. ... | gmatteo/pymatgen | pymatgen/io/nwchem.py | Python | mit | 35,267 | [
"Gaussian",
"NWChem",
"pymatgen"
] | e542501c6972b6f3902531a142a14d335966929ad937bec8e8961fac4a3687be |
# Copyright 2017 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | kobejean/tensorflow | tensorflow/python/autograph/pyct/cfg.py | Python | apache-2.0 | 27,421 | [
"VisIt"
] | f45137a00715782e362c52b00b13e8b18c1e6bb862eb9745af2020c680b27480 |
import astropy.units as u
import numpy as np
from pytest import approx
import fastimgproto.gridder.conv_funcs as conv_funcs
from fastimgproto.imager import image_visibilities
def test_normalization():
n_image = 16 * u.pix # pixel co-ords -8 through 7.
support = 3
uvw_pixel_coords = np.array([
(-... | SKA-ScienceDataProcessor/FastImaging-Python | tests/test_imager.py | Python | apache-2.0 | 1,927 | [
"Gaussian"
] | 9d770e9532093c354aff19d28790f7241be927f6ba6b0fae4d31c2a2537e6838 |
##########################################################################
#
# This file is part of OCEMR.
#
# OCEMR is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License,... | ph1l/ocemr | ocemr/admin.py | Python | gpl-3.0 | 3,155 | [
"VisIt"
] | 107658353eddb9a870b02e8ae0d10b00e164194e7f73094aed6ca2920c0958be |
from __future__ import division, print_function, unicode_literals
# This code is so you can run the samples without installing the package
import sys
import os
sys.path.insert(0, os.path.join(os.path.dirname(__file__), '..'))
#
testinfo = "f 10 0.033, s, f 20 0.033, s, f 30 0.033, s, f 30 0.033, s, q"
tags = "particl... | vyscond/cocos | test/test_particle_flower.py | Python | bsd-3-clause | 978 | [
"Galaxy"
] | a57f0dbbdf6fd0194c944e9807ed157a985c7ca60b95c131e0bbd7208916a56c |
""" TransformationPlugin is a class wrapping the supported transformation plugins
"""
import re
import random
from DIRAC import gConfig, gLogger, S_OK, S_ERROR
from DIRAC.Core.Utilities.SiteSEMapping import getSitesForSE, getSEsForSite
from DIRAC.Core.Utilities.List import breakL... | Sbalbp/DIRAC | TransformationSystem/Agent/TransformationPlugin.py | Python | gpl-3.0 | 12,638 | [
"DIRAC"
] | 249d3e1dda380ca09c1fb50a724b984054e48c3aae8c19df1981988418a8c01f |
# bagel_macro.py
# the macro to generate a bagel, the axle-guidance of the bell piece
# created by charlyoleg on 2013/12/02
#
# (C) Copyright 2013 charlyoleg
#
# This file is part of the Cnc25D Python package.
#
# Cnc25D is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Pu... | charlyoleg/Cnc25D | cnc25d/tests/bagel_macro.py | Python | gpl-3.0 | 5,067 | [
"VisIt"
] | b7a087dbc79b0ef188b1aae4acc4eee35462f94413d5bb3e1a989e4b0c40e038 |
"""
Class object that encapsulates a component, the phase-space model
of an unbound set of stars formed from the same starburst/filament.
A component models the initial phase-space distribution of stars
as a Gaussian. As such there are three key attributes:
- mean: the central location
- covariance matrix: the spread ... | mikeireland/chronostar | chronostar/component.py | Python | mit | 69,583 | [
"Gaussian"
] | 320e3b7ec5c7a9a89764e42ce666ba825d7b18491b186289052ef642bebb16f6 |
import syslog
from DIRAC import gLogger, gConfig
from DIRAC.Core.DISET.RPCClient import RPCClient
from DIRAC.Core.Utilities import Time
from DIRAC.Core.Utilities.ThreadScheduler import gThreadScheduler
class SecurityLogClient:
__securityLogStore = []
def __init__( self ):
self.__messagesList = []
self._... | Sbalbp/DIRAC | FrameworkSystem/Client/SecurityLogClient.py | Python | gpl-3.0 | 2,116 | [
"DIRAC"
] | 1412f9000f63b35cacff2098dce297279b0d21d1ac279436310d4460a3ce516c |
""" The TimeLeft utility allows to calculate the amount of CPU time
left for a given batch system slot. This is essential for the 'Filling
Mode' where several VO jobs may be executed in the same allocated slot.
The prerequisites for the utility to run are:
- Plugin for extracting information from lo... | vmendez/DIRAC | Core/Utilities/TimeLeft/TimeLeft.py | Python | gpl-3.0 | 9,093 | [
"DIRAC"
] | 1778a8c15972eef4c441fe2528b0a1245df191c16d579d8c224116c78b54f70a |
# -*- coding: UTF-8 -*-
#This file is part of pyAlienFX.
#
# pyAlienFX is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
#... | andybarry/abarry-pyalienfx | AlienFX/AlienFXEngine.py | Python | gpl-3.0 | 23,305 | [
"VisIt"
] | 2cbef99b283bf424964fb87f4f83eba4cefd44286337337fe60507cd93dcba19 |
import calendar
import json
import re
import uuid
import mock
from nose.tools import eq_, ok_
from django.core.cache import cache
from django.contrib.auth.models import User
from django.core import mail
from django.core.urlresolvers import reverse
from airmozilla.main.models import Event
from airmozilla.base.tests.t... | blossomica/airmozilla | airmozilla/comments/tests/test_views.py | Python | bsd-3-clause | 23,822 | [
"VisIt"
] | c3eb38d153b4f8730ee442da317bdf4601cfc27b6e47a9741578dc240a6534d2 |
#*******************************************************************************
#
# Vocabulary definitions
#
#*******************************************************************************
bullshitWords = {
'nCosmos' : [
'cosmos',
'quantum soup',
'infinite',
'universe',
'galaxy',
'multiverse',
'grid',... | mcquiggi/wisdom | vocabulary.py | Python | mit | 8,094 | [
"CRYSTAL",
"Galaxy"
] | d9249a7e285653a22c719e4f61a19d4c9a363a769c64a341f97e72a3a9777490 |
# coding: utf-8
#
# Copyright 2012 NAMD-EMAP-FGV
#
# This file is part of PyPLN. You can get more information at: http://pypln.org/.
#
# PyPLN is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 o... | NAMD/pypln.backend | tests/test_worker_freqdist.py | Python | gpl-3.0 | 1,502 | [
"NAMD"
] | f838effaa6a02cdeb0ea343b59a657191fd81d39ae88da3c6ab4cd8bac9436d8 |
from .. import Provider as PersonProvider
class Provider(PersonProvider):
formats = (
'{{first_name}} {{last_name}}',
'{{first_name}} {{last_name}}',
'{{first_name}} {{last_name}}',
'{{first_name}} {{last_name}}',
'{{first_name}} {{last_name}}',
'{{first_name}} {{la... | danhuss/faker | faker/providers/person/no_NO/__init__.py | Python | mit | 7,066 | [
"MOE"
] | 9c02d76a6923e9e03ce89a61419e183b81590351096cf61897c221ed491ac6c8 |
"""
An autoindex & strategy rapd_agent
"""
__license__ = """
This file is part of RAPD
Copyright (C) 2009-2018, Cornell University
All rights reserved.
RAPD is free software: you can redistribute it and/or modify
it under the terms of the GNU Affero General Public License as published by
the Free Software Foundation... | RAPD/RAPD | src/old_agents/rapd_agent_index+strategy.py | Python | agpl-3.0 | 109,820 | [
"CRYSTAL"
] | 1ba312bffc4e584864e4af2817619edc468dfb65590a5928d345df380cd06f6d |
''' file name : remap.py
Description : This sample shows how to remap images
This is Python version of this tutorial : http://opencv.itseez.com/doc/tutorials/imgproc/imgtrans/remap/remap.html#remap
Level : Beginner
Benefits : Learn to use remap function
Usage : python remap.py
Written by : Abid K. (abidrahman2@g... | asrob-uc3m/rpc_rpi | src/python/opencv_python_tutorials/Official_Tutorial_Python_Codes/3_imgproc/remap.py | Python | gpl-3.0 | 1,835 | [
"VisIt"
] | 6f7500e97b39df27a81e9c3ff6c245e8b829a361fe3dd18feb420b18ee7c22dc |
"""Universal feed parser
Handles RSS 0.9x, RSS 1.0, RSS 2.0, CDF, Atom 0.3, and Atom 1.0 feeds
Visit https://code.google.com/p/feedparser/ for the latest version
Visit http://packages.python.org/feedparser/ for the latest documentation
Required: Python 2.4 or later
Recommended: iconv_codec <http://cjkpython.i18n.org... | bruceyou/NewsBlur | utils/feedparser.py | Python | mit | 155,454 | [
"NetCDF",
"VisIt"
] | 8f3c3c6f1d118841ecf6b866a5b3bf0231cb3936fcb6e956d8cc1e947cd13328 |
"""
Classes::
IntegrateData -- A collection of functions that integrate the fit
created by FitData.
"""
import numpy as np
from itertools import product
from json import load, dump
from scipy.special.orthogonal import p_roots
from dftintegrate import customserializer as cs
from dftintegrate.fourier import fit... | mmb90/dftintegrate | dftintegrate/fourier/integratedata.py | Python | mit | 6,475 | [
"Gaussian"
] | 5bdd908621c732e2c801bf72038f58a706cdb15698cc9255a63fe7bcacb55f31 |
# -*- coding: utf-8 -*-
# vi:si:et:sw=4:sts=4:ts=4
##
## Copyright (C) 2012 Async Open Source <http://www.async.com.br>
## All rights reserved
##
## This program is free software; you can redistribute it and/or modify
## it under the terms of the GNU General Public License as published by
## the Free Software Foundati... | andrebellafronte/stoq | stoqlib/gui/test/test_sale_wizard.py | Python | gpl-2.0 | 20,859 | [
"VisIt"
] | 000797bbd7c81c8646d8dccf334085dacb48571115a404131dba2836d54b1e36 |
"""Open Drug Discovery Toolkit
==============================
Universal and easy to use resource for various drug discovery tasks, ie docking, virutal screening, rescoring.
Attributes
----------
toolkit : module,
Toolkits backend module, currenlty OpenBabel [ob] and RDKit [rdk].
This settin... | mwojcikowski/opendrugdiscovery | oddt/__init__.py | Python | bsd-3-clause | 888 | [
"RDKit"
] | 09b54014639b02ef4c9949f6536fd944a35f7b015f65c276115325605a559ccd |
# Copyright 2014 SolidBuilds.com. All rights reserved
#
# Authors: Ling Thio <ling.thio@gmail.com>
from __future__ import print_function # Use print() instead of print
from flask import url_for
from StringIO import StringIO
def test_page_urls(client):
# Visit landing page
response = client.get(url_for('landi... | xke/nash | tests/test_page_urls.py | Python | bsd-2-clause | 1,963 | [
"VisIt"
] | 7defc83caea409cd6716bd29482028affbba95c02e6cc75b2f1d498be6c5cf25 |
"""Universal feed parser
Handles RSS 0.9x, RSS 1.0, RSS 2.0, CDF, Atom 0.3, and Atom 1.0 feeds
Visit https://code.google.com/p/feedparser/ for the latest version
Visit http://packages.python.org/feedparser/ for the latest documentation
Required: Python 2.4 or later
Recommended: iconv_codec <http://cjkpython.i18n.org... | lucidbard/NewsBlur | utils/feedparser.py | Python | mit | 160,127 | [
"NetCDF",
"VisIt"
] | fd655cd0dbc65b7aaef83fd398e3b74338b0a036e82b34ff8b84888943f00e47 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
'''
=========================================================================
Program: Visualization Toolkit
Module: TestNamedColorsIntegration.py
Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen
All rights reserved.
See Copyright.txt or http://www.... | aashish24/VTK-old | Filters/Modeling/Testing/Python/TestNamedColorsIntegration.py | Python | bsd-3-clause | 5,088 | [
"VTK"
] | 05aa78b78c2e1051fd1bc13b12bd0f20f9124e5abf6ae967502cbe1067c4a3e6 |
# RMSD-based clustering to filter out models with high structural similarity
#
# Daniel L. Parton <partond@mskcc.org> - 22 Feb 2013
# Edits by John D. Chodera <choderaj@mskcc.org> - 17 Mar 2013
#
# PREREQUISITES
#
# * MDAnalysis
# code.google.com/p/mdanalysis
# =============================
# IMPORTS
# ===============... | choderalab/Ensembler2 | scripts/attic/cluster-models.py | Python | gpl-2.0 | 6,795 | [
"MDAnalysis"
] | f8e44cb9ad26b25ff823517a70a9b1b821456b946645a8cdda98699b069efe12 |
from galaxy.datatypes.data import Text
from galaxy.datatypes.data import get_file_peek
from galaxy.datatypes.data import nice_size
from galaxy.datatypes.metadata import MetadataElement
from galaxy import util
import tempfile
import subprocess
import json
import gzip
import os
import re
import logging
from galaxy.mod... | lappsgrid-incubator/GalaxyMods | lib/lappsgrid/datatypes/lapps.py | Python | apache-2.0 | 9,789 | [
"Galaxy"
] | 6bb31a3d4fa68f8deb155dde72757431f899dee959615de2cfc75cd88aff2a5b |
#!/usr/bin/python
# -*- coding: utf-8 -*-
# (c) 2013, Jeroen Hoekx <jeroen.hoekx@dsquare.be>, Alexander Bulimov <lazywolf0@gmail.com>
# GNU General Public License v3.0+ (see COPYING or https://www.gnu.org/licenses/gpl-3.0.txt)
from __future__ import absolute_import, division, print_function
__metaclass__ = type
ANS... | bearstech/ansible | lib/ansible/modules/system/lvol.py | Python | gpl-3.0 | 16,640 | [
"Firefly"
] | b59baa70176d6b827e5bba5045b6c0095b5d8fbab3217afef23b6d9cc6af4946 |
#
# Copyright 2015 LinkedIn Corp. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or ... | thomas-young-2013/wherehowsX | metadata-etl/src/main/resources/jython/HdfsLoad.py | Python | apache-2.0 | 17,802 | [
"ESPResSo"
] | d5b3b25c441ce45770ba2ac2efc0ebbc70251cd749266cc7e9549204620b54bf |
import sys
import os
home = os.path.expanduser("~")
sys.path.append(os.path.join(home, 'gnumpy'))
import gnumpy as gp
import numpy as np
class RBM(object):
'''
This class implements a restricted Bolzmann machine using gnumpy,
which runs on a gpu if cudamat is installed
args:
int n_visible... | JRMeyer/Autotrace | under-development/deepnet.py | Python | mit | 11,502 | [
"Gaussian"
] | 4a40120510978f73574c5ca738cf1516955768a4e02ab639ddc2be88e93b9898 |
#!/usr/bin/env python
"""
Demos of real-time MIMO time encoding and decoding algorithms that use IAF
neurons with delays.
"""
# Copyright (c) 2009-2015, Lev Givon
# All rights reserved.
# Distributed under the terms of the BSD license:
# http://www.opensource.org/licenses/bsd-license
import numpy as np
# Set matplo... | bionet/ted.python | demos/iaf_delay_rt_demo.py | Python | bsd-3-clause | 3,575 | [
"NEURON"
] | 46ab8de116d3b7c79cafb161ea28d6f9066652730b0722f3127b86ab91ee2d2a |
#!/usr/bin/python
import serial
import time
import requests
import json
import sys
#import logging
import os
#import traceback
import terminal_colors as tc
import argparse
import datetime
import weather_conditions as wc
import led_command as lc
import wx
import app_ui as ui
#script_path = os.getcwd()
#log_path = scri... | jhogsett/linkit | python/weather.py | Python | mit | 21,080 | [
"Amber"
] | 590dc80c852f7e66255ec1ddecacbf562fb6b599621fb7cd243ed7ce1591792d |
# encoding: utf-8
# ## Imports
from __future__ import unicode_literals, print_function
try:
import tornado.ioloop
import tornado.httpserver
import tornado.wsgi
except ImportError:
print("You must install the 'tornado' package.")
raise
# ## Server Adapter
def serve(application, host='127.0.0.1', port=8080, **... | marrow/WebCore | web/server/tornado_.py | Python | mit | 901 | [
"VisIt"
] | 587361a3a594b61ba9375786ba5065cb968ec96161cf245ca386244054461ac9 |
import numpy as np
import os
try:
import matplotlib
if not os.environ.get('DISPLAY'):
# Use non-interactive Agg backend
matplotlib.use('Agg')
from matplotlib import pyplot as plt
except ImportError:
import platform
if platform.python_implementation() == 'PyPy':
# PyPy doesn'... | bamueh/dark-matter | dark/features.py | Python | mit | 12,240 | [
"BLAST",
"Biopython"
] | 0a9387e18e375ccc73aa6abdcdf8cec9eb59cc25d5204b844b3639557412dad1 |
# Copyright (c) 2016 kamyu. All rights reserved.
#
# Google Code Jam 2014 Round 1B - Problem C. The Bored Traveling Salesman
# https://code.google.com/codejam/contest/2994486/dashboard#s=p2
#
# Time: O(N^3)
# Space: O(M + N)
#
def connectivity_check(neighbors, source, DEAD):
visited = set()
def dfs(u):
... | kamyu104/GoogleCodeJam-2014 | Round 1B/the-bored-traveling-salesman.py | Python | mit | 2,994 | [
"VisIt"
] | 59bf9db9edc7318fc216386536bc185dc3b67398f05b6dee07a06d192d104ebd |
import datetime
from flask_wtf import Form
from wtforms import validators
from wtforms import SelectMultipleField as _SelectMultipleField, DateField, IntegerField as _IntegerField
from wtforms.widgets import TextInput as _TextInput
from wtformsparsleyjs import (Select,
SelectField,
... | neotrinity/cqf | web/api/forms.py | Python | mit | 3,880 | [
"Gaussian"
] | 0c71d20541fe1e9245d3c5b6690bf4916545c370a9cff94893c66fccf125f63b |
# -*- coding: utf-8 -*-
import sys
sys.path.insert(0, '../docsim')
import CompareTwoDocs
text1 = "I do not speak english"
#text1 = "München bietet in seinen diversen Abteilungen immer"
text2="es usted estoy bien dónde está Berlín"
#text1='wie zijt gij, ik ben goed , waar is Berlijn'
#text2 = "A statement from Mr Obama... | adityamogadala/xLiMeSemanticIntegrator | examples/testcomparedocs.py | Python | gpl-3.0 | 673 | [
"VisIt"
] | 408e17a2dfdc42bde42848caa2978be345485e802fa082f4e759097baf543810 |
# -*- coding: utf-8 -*-
"""
brewpi-neuron settings
~~~~~~~~~~~~~~~~~~~~~~
Settings file for our (mock) api
** copied from eve-demo:
PLEASE NOTE: We don't need to create the two collections in MongoDB.
Actually, we don't even need to create the database: GET requests on an
empty/non-exist... | elcojacobs/brewpi-neuron | settings.py | Python | gpl-3.0 | 4,285 | [
"NEURON"
] | 92b6ec6b38430278dca2bfd02448f74555c5031aea4b5896cfadd559a81331d8 |
"""Tools to improve pylint introspection"""
# stdlib
import os
import re
# These imports are *sort-of* dangerous in that python-utils does not declare a dependency on any of these, but since
# this specific package and modules are only meant to be run within pylint we are assuming that the pylint environment
# is setu... | kevinseelbach/generic_utils | src/generic_utils/pylint_tools/gen_utils_common.py | Python | bsd-3-clause | 3,728 | [
"VisIt"
] | 9815a99e260824e163cc928cfb6d5710e0d036bde53c82c1c474cc3e740819d6 |
import psi4
import pytest
using_ambit = pytest.mark.skipif(psi4.addons("ambit") is False,
reason="Psi4 not compiled with ambit. Rebuild with -DENABLE_ambit")
using_cfour = pytest.mark.skipif(psi4.addons("cfour") is False,
reason="Psi4 not detecting CFOUR... | andysim/psi4 | tests/pytest/test_addons.py | Python | gpl-2.0 | 32,357 | [
"CFOUR",
"Psi4",
"Q-Chem"
] | d11f4d80a892893ba9af8a8985de5fb8781fbab963bd788d7516ea00db972e27 |
#!/usr/bin/env python
# Script by Jason Kwong
# Checks for ctrA gene in Neisseria meningitidis
# Use modern print function from python 3.x
from __future__ import print_function
# Modules
import argparse
from argparse import RawTextHelpFormatter
import sys
import os
import subprocess
from subprocess import Popen
from ... | MDU-PHL/meningotype | meningotype/ctrA.py | Python | gpl-3.0 | 2,783 | [
"BLAST",
"Biopython"
] | 19b3bcd9492e7b201bb653e279d67c5cd33a5c96edd9eab38b13852916a41494 |
#
# This implementation is derived from the ``concurrent.futures``
# module of Python 3.2, by Brian Quinlan, (C) 2011 the Python Software
# Foundation. See http://docs.python.org/3/license.html for more information.
import logging
import uuid, threading, signal
import h5py
from itertools import islice
from contextlib ... | westpa/westpa | lib/wwmgr/work_managers/core.py | Python | mit | 15,450 | [
"Brian"
] | b85ee10870b1406480c3ae148aa22731f1c8b5705b97a771bf82ae134a244b90 |
#
# Copyright 2015 by Justin MacCallum, Alberto Perez, Ken Dill
# All rights reserved
#
import logging
import logging.handlers
import time
import meld
from meld import util
from meld import vault
from meld.system import get_runner
from simtk.openmm import version as mm_version
from meld.remd import multiplex_runner
im... | laufercenter/meld | meld/remd/launch.py | Python | mit | 4,928 | [
"OpenMM"
] | e20bbc6e2cf11f549002c34704cc37e6d4146660626ccb47b937e8dff122c40a |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2017 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of ... | kratman/psi4public | psi4/driver/qcdb/options.py | Python | gpl-2.0 | 10,836 | [
"CFOUR",
"ORCA",
"Psi4",
"Q-Chem"
] | c18a8773d1e87cabb8e7857c708c5cc2628ff356967ea93f30ad9a2349c43137 |
# This file is part of Androguard.
#
# Copyright (c) 2012 Geoffroy Gueguen <geoffroy.gueguen@gmail.com>
# All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://... | andymg/androguard | androguard/decompiler/dad/basic_blocks.py | Python | apache-2.0 | 10,517 | [
"VisIt"
] | e01ee5a1ca7f0dd6821279392c1f2b6bb0f62142886d4be5e362b4536b0b4453 |
# The MIT License (MIT)
#
# Copyright (c) 2015 Brian Wray (brian@wrocket.org)
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# ... | wrocket/Tulip-Chess | tests/basic-tests/test_makemove.py | Python | mit | 24,955 | [
"Brian"
] | cfcd29a2be060aa12016527b4203c8437358991373964a7795b3b0547b6f5175 |
"""
This file contains utility classes for modifying components.
:copyright: Copyright 2010-2017 by the NineML Python team, see AUTHORS.
:license: BSD-3, see LICENSE for details.
"""
from nineml.exceptions import NineMLUsageError, NineMLNameError
from nineml.visitors import BaseVisitor, BasePreAndPostVisitorWithContex... | INCF/lib9ML | nineml/abstraction/componentclass/visitors/modifiers.py | Python | bsd-3-clause | 5,582 | [
"VisIt"
] | a1d78af592f8b507ac98c1967ce18dafaa670a5a1b687e99af896e474173121a |
# Copyright (c) 2009-2021 The Regents of the University of Michigan
# This file is part of the HOOMD-blue project, released under the BSD 3-Clause
# License.
"""Test the Trigger classes."""
import itertools
from inspect import isclass
import pickle
import pytest
import hoomd
import hoomd.trigger
class CustomTrigge... | joaander/hoomd-blue | hoomd/pytest/test_trigger.py | Python | bsd-3-clause | 4,115 | [
"HOOMD-blue"
] | a02ee78839d2b78b0624e824cd134873cbe02cc306d3d41fcbfaf5443cf2a372 |
from collections import defaultdict
from outsourcer import Code
from .constants import POS, RESULT, STATUS, TEXT
class Expression:
defines_local = False
has_params = False
is_commented = True
is_reference = False
is_tagged = True
def always_succeeds(self):
return False
def can_p... | jvs/sourcer | sourcer/expressions/base.py | Python | mit | 3,308 | [
"VisIt"
] | f04e1270c2aad598064d04b79de1ad988b3af913df93ff2b1d9a57c381368dec |
"""
Usage:
yahoo-groups-backup.py scrape_messages [-h|--help] [options] <group_name>
Options:
-d --delay=<delay> Delay before scraping each message, to avoid rate
limiting. Delays by a gaussian distribution with
average <delay> and standard deviation <del... | csaftoiu/yahoo-groups-backup | yahoo_groups_backup/subcommands/scrape_messages.py | Python | unlicense | 2,142 | [
"Gaussian"
] | 04d5f6d875af4b8c7ebc0bf680354ab0bf7bcaa41845b1b9f077bc3e031c1636 |
import glob
import hashlib
import os
from subprocess import check_call
import h5py
import openmc
import pytest
from tests.testing_harness import TestHarness
from tests.regression_tests import config
vtk = pytest.importorskip('vtk')
class PlotVoxelTestHarness(TestHarness):
"""Specialized TestHarness for running ... | tjlaboss/openmc | tests/regression_tests/plot_voxel/test.py | Python | mit | 1,855 | [
"VTK"
] | 48103748d998654da5c409f2e5a8da12a2d1ac8cd23ce6c888c3bd8dd93b5d6d |
# hg.py - hg backend for convert extension
#
# Copyright 2005-2009 Matt Mackall <mpm@selenic.com> and others
#
# This software may be used and distributed according to the terms of the
# GNU General Public License version 2 or any later version.
# Notes for hg->hg conversion:
#
# * Old versions of Mercurial didn't tr... | joewalnes/idea-community | plugins/hg4idea/testData/bin/hgext/convert/hg.py | Python | apache-2.0 | 13,779 | [
"Octopus"
] | 33b7d7d299d6f71656d5ab73ab975e05b57d6c3ade86b0cd92fdb358ad31e827 |
import unittest
import os
import subprocess
import shutil
import json
import numpy
from numpy import genfromtxt
from scipy import stats
from Builder import Builder
import math
import csv
class TestNoiseResults(unittest.TestCase):
@classmethod
def setUpClass(cls):
print("")
print("Te... | sballesteros/ssm | src/test_Algorithms.py | Python | gpl-3.0 | 45,614 | [
"DIRAC"
] | cd412c148c71685687cb2c7f23263a13171eef7062429b600fb7ce605dc5afc5 |
# Licensed under a 3-clause BSD style license - see LICENSE.rst
"""Mathematical models."""
from __future__ import (absolute_import, unicode_literals, division,
print_function)
from collections import OrderedDict
import numpy as np
from .core import (Fittable1DModel, Fittable2DModel, Model,
... | AustereCuriosity/astropy | astropy/modeling/functional_models.py | Python | bsd-3-clause | 74,699 | [
"DIRAC",
"Gaussian"
] | f2f04d268d61db9e1bb4dcd504bdcf51d3425ef0a171c730ffbed24922577eb7 |
r"""
Ordination results format (:mod:`skbio.io.format.ordination`)
=============================================================
.. currentmodule:: skbio.io.format.ordination
The ordination results file format (``ordination``) stores the results of an
ordination method in a human-readable, text-based format. The form... | wdwvt1/scikit-bio | skbio/io/format/ordination.py | Python | bsd-3-clause | 14,472 | [
"scikit-bio"
] | 0b74b9031e9799d0ae3961c7508160c28c7545c4ec9954b8e94b9adf4b222f5a |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
# Copyright (C) 2021 emijrp <emijrp@gmail.com>
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your optio... | emijrp/wikidata | commons-stats.py | Python | gpl-3.0 | 12,380 | [
"Galaxy"
] | 5f0ae15de6acc3641fd23e3caaa7a0f4f8fe0cdcad8b964f07435fc24635e34c |
"""
User policy settings
"""
from askbot.conf.settings_wrapper import settings
from askbot.conf.super_groups import LOGIN_USERS_COMMUNICATION
from askbot.deps import livesettings
from django.conf import settings as django_settings
from askbot.skins import utils as skin_utils
from django.utils.translation import ugettex... | divio/askbot-devel | askbot/conf/user_settings.py | Python | gpl-3.0 | 5,195 | [
"VisIt"
] | 7f340d7ca68e11aedfea730ef4d3bbc2c0abafdc6f450b6850b3015c0931b0f8 |
#!/usr/bin/env python
# coding: utf-8
#
# Copyright 2007 Google Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by ... | v3ss0n/rietveld | upload.py | Python | apache-2.0 | 99,749 | [
"VisIt"
] | d54cb85308d92d09858c39ab3fb95c01a246fc0f7f2215093f5e24e6136986ab |
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
Package for analysis of magnetic structures.
"""
from pymatgen.analysis.magnetism.analyzer import * # noqa
| vorwerkc/pymatgen | pymatgen/analysis/magnetism/__init__.py | Python | mit | 207 | [
"pymatgen"
] | a6d2b3a277004f43db2adbc6525ced45595894b9ee20606d5fe10e8d70c67232 |
import time
import math
from nxtools import s2tc
from firefly.api import api
from firefly.objects import has_right
from firefly.qt import (
QApplication,
QPushButton,
QLabel,
QWidget,
QProgressBar,
QHBoxLayout,
QGridLayout,
QVBoxLayout,
QTimer,
)
PROGRESS_BAR_RESOLUTION = 1000
c... | immstudios/firefly | firefly/modules/rundown_mcr.py | Python | gpl-3.0 | 10,643 | [
"Firefly"
] | 70bba93511e28700940b57f16c99c689fabecad4ac4d1047934d91614da656c5 |
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class OpenkimModels(CMakePackage):
"""OpenKIM is an online framework for making molecular simula... | LLNL/spack | var/spack/repos/builtin/packages/openkim-models/package.py | Python | lgpl-2.1 | 2,248 | [
"OpenKIM"
] | 01754a76fe23a483861896c41fb0a270ee175d2fb89c77aea1c80ab4d1c4c5e5 |
# (c) 2013-2014, Michael DeHaan <michael.dehaan@gmail.com>
# (c) 2015 Toshio Kuratomi <tkuratomi@ansible.com>
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either... | wenottingham/ansible | lib/ansible/executor/module_common.py | Python | gpl-3.0 | 34,696 | [
"VisIt"
] | f3ba63bd34ddd7d0176351213dbf7643da5ceb6c9b493b7e166938006349abe5 |
import pygame
import random
import Funkcje as fun
WHITE = (255, 255, 255)
RED = (255, 0, 0)
GREEN = (20, 255, 140)
PURPLE = (255, 0, 255)
YELLOW = (255, 255, 0)
BLUE = (100, 100, 255)
L_BLUE = (12, 219, 242)
BLACK = (0,0,0)
SCREENWIDTH=500
SCREENHEIGHT=600
class Spaceship(pygame.sprite.Sprite):
def __init__(self)... | wkocin/python_game | Obiekty.py | Python | mit | 7,753 | [
"BLAST"
] | c5e689764cf3c4118b4d3456e3fafee077a51107e4e81eabb602dd5eac4567ad |
#!/usr/bin/env python
# -*- coding: utf8 -*-
# *****************************************************************
# ** PTS -- Python Toolkit for working with SKIRT **
# ** © Astronomical Observatory, Ghent University **
# *****************************************************************
##... | Stargrazer82301/CAAPR | CAAPR/CAAPR_AstroMagic/PTS/pts/modeling/fitting/initialization.py | Python | mit | 34,092 | [
"Galaxy"
] | 200e46eff1edbf5dea7984fcb1e3fc569080de66eeea2e7b793a9c3c363e4c37 |
# -*- coding: utf-8 -*-
"""
dataset.py
RAPIDpy
Created by Alan D Snow, 2016.
License: BSD-3-Clause
"""
from csv import writer as csv_writer
import datetime
from netCDF4 import Dataset, num2date
import numpy as np
from numpy.ma import is_masked
import pandas as pd
from past.builtins import xrange # pylint... | erdc-cm/RAPIDpy | RAPIDpy/dataset.py | Python | bsd-3-clause | 48,751 | [
"NetCDF"
] | e103181c1a1d4d887d8d0d89d442a8bec71e5db2063c937e35dfc13339cec017 |
#!/usr/bin/env python
"""
snippet.py
Author: Tony Papenfuss
Date: Mon Jun 23 23:32:21 EST 2008
"""
import os, sys
from alchemy import *
from blast import BlastFile, HSP
tableName = 'Devil454' # Devil454, Platy454, PlatySolexa
dsn = 'sqlite:///test.db'
metadata = MetaData()
# Create the table and define the ma... | PapenfussLab/Mungo | mungo/alchemy/snippets/load.py | Python | artistic-2.0 | 770 | [
"BLAST"
] | 62a6b3bef75e46f1a611c1072df40e748950cb7953743c897123c177842b24f3 |
#!/usr/bin/env vpython
# Copyright 2013 The LUCI Authors. All rights reserved.
# Use of this source code is governed under the Apache License, Version 2.0
# that can be found in the LICENSE file.
from __future__ import print_function
import datetime
import json
import logging
import os
import StringIO
import sys
impor... | endlessm/chromium-browser | tools/swarming_client/tests/swarming_test.py | Python | bsd-3-clause | 85,705 | [
"VisIt"
] | 7376c1454b004010e70de42105c9efbac9921f6421287689c8296c386a29f500 |
#!/usr/bin/env python
#
# Electrum - Lightweight Bitcoin Client
# Copyright (C) 2015 Thomas Voegtlin
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at y... | Kefkius/scallop | plugins/trustedcoin.py | Python | gpl-3.0 | 26,135 | [
"VisIt"
] | dec88310b76afdfd01aa1e9d5313c4541e8e993e5cc7f819009d0f374222e7df |
# function.py ---
import numpy as np
import sys
import moose
simtime = 1.0
plot_ = False
if plot_:
import matplotlib.pyplot as plt
def example():
"""Function objects can be used to evaluate expressions with arbitrary
number of variables and constants. We can assign expression of the
form::
f... | upibhalla/moose-core | tests/python/test_function_derivative.py | Python | gpl-3.0 | 6,043 | [
"MOOSE"
] | 4ace5084ae5759b76da4971ab76325b60a100c9a2f32706fcf67b737cfc58cbe |
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RAnalysispageserver(RPackage):
"""A framework for sharing interactive data and plots from ... | LLNL/spack | var/spack/repos/builtin/packages/r-analysispageserver/package.py | Python | lgpl-2.1 | 1,178 | [
"Bioconductor"
] | 7a6108bec725701ce2b399d2c1d72f3443f5bab2a8e8275251a6c37089db4455 |
"""
test_SpikingNeuron.py
This file is part of ANNarchy.
Copyright (C) 2013-2016 Joseph Gussev <joseph.gussev@s2012.tu-chemnitz.de>,
Helge Uelo Dinkelbach <helge.dinkelbach@gmail.com>
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General P... | ANNarchy/ANNarchy | tests/Unittests/test_SpikingSynapse.py | Python | gpl-2.0 | 4,172 | [
"NEURON"
] | cb908c8dcca5517b3b8fda0f00b9b4867fb306905e51dc9d6bb225531cca318f |
# Python test set -- part 1, grammar.
# This just tests whether the parser accepts them all.
# NOTE: When you run this test as a script from the command line, you
# get warnings about certain hex/oct constants. Since those are
# issued by the parser, you can't suppress them by adding a
# filterwarnings() call to this... | trivoldus28/pulsarch-verilog | tools/local/bas-release/bas,3.9/lib/python/lib/python2.3/test/test_grammar.py | Python | gpl-2.0 | 17,317 | [
"GULP"
] | be66397a1c280ede209f1a046547c89c51b74d3cb76008a54200a881f0d17974 |
def compliment():
import random
compliments = """Your smile is contagious
You look great today
You're a smart cookie
I bet you make babies smile
You have impeccable manners
I like your style
You have the best laugh
I appreciate you
You are the most perfect you there is
Your perspective is refreshing
You're an awesom... | DNAGamer/Helix3 | code/misc_compliment.py | Python | mit | 4,668 | [
"BLAST"
] | e9ba1d90e2b3f8b643024012f9a09ceb76dae1f763f0df2041010d80e11617c6 |
# Copyright 2014-2018 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by appl... | gkc1000/pyscf | pyscf/nao/m_siesta_ion_add_sp2.py | Python | apache-2.0 | 1,325 | [
"PySCF"
] | 6a3adaa71fa6fb93ec5b1579acfbd882b1106393c48ed2aa2f38ee455c87f9b4 |
# -*- coding: utf-8 -*-
# Taken from http://www.iana.org/assignments/language-subtag-registry
langs = (
("aa", "Afar"),
("ab", "Abkhazian"),
("ae", "Avestan"),
("af", "Afrikaans"),
("ak", "Akan"),
("am", "Amharic"),
("an", "Aragonese"),
("ar", "Arabic"),
("as", "Assamese"),
("av", "Avaric"),
("ay", ... | godiard/pathagar | books/langlist.py | Python | gpl-2.0 | 181,877 | [
"ADF",
"ASE",
"BWA",
"Elk",
"MOE",
"MOOSE",
"VMD",
"xTB"
] | 3f133630e22c0d2ad04fc5b8edbefe575e0933a77760bdd21591f245adf831e5 |
"""
Courseware views functions
"""
import logging
import urllib
import json
import cgi
from datetime import datetime
from collections import defaultdict
from django.utils import translation
from django.utils.translation import ugettext as _
from django.utils.translation import ungettext
from django.conf import setti... | UXE/local-edx | lms/djangoapps/courseware/views.py | Python | agpl-3.0 | 46,152 | [
"VisIt"
] | bcede9ae8246276346c921894b6fa55fe1fbe0d54a27bb2dfa31c1e957a26b70 |
#!/opt/python-2.7.1/bin/python
"""
Created on Thurs, 9/04/2014
@author: mdistasio
"""
"""
import modules
"""
# Python modules
import sys
import os
import subprocess
import numpy as np
import glob
import pickle
import argparse
import re
# mmd Library of functions
sys.path.append(os.path.dirname(os.path.dirname(os.path... | ChellyD65/shoelace | python/shoelace/scripts/Align_All_Cells_In_Dir.py | Python | gpl-2.0 | 3,614 | [
"Bowtie"
] | a22a77070a73652558c3ba83d0c8ac5b0a58cb3b102ca81c5f94d37608ca2be7 |
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