text stringlengths 12 1.05M | repo_name stringlengths 5 86 | path stringlengths 4 191 | language stringclasses 1
value | license stringclasses 15
values | size int32 12 1.05M | keyword listlengths 1 23 | text_hash stringlengths 64 64 |
|---|---|---|---|---|---|---|---|
# -*- coding: utf-8 -*-
#! \file ./doit/text/pgen/utils/cfgtools.py
#! \author Jiří Kučera, <sanczes@gmail.com>
#! \stamp 2016-01-12 21:31:16 (UTC+01:00, DST+00:00)
#! \project DoIt!: Tools and Libraries for Building DSLs
#! \license MIT
#! \version 0.0.0
#!... | i386x/doit | doit/text/pgen/utils/cfgtools.py | Python | mit | 8,402 | [
"VisIt"
] | b8af3bb7d2fa80c80f9306d32f5e399074aab935a9b25ae96c3d12a98d08caf7 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
#
# king_phisher/utilities.py
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
#
# * Redistributions of source code must retain the above copyright
# notice, this l... | securestate/king-phisher | king_phisher/utilities.py | Python | bsd-3-clause | 18,144 | [
"VisIt"
] | 42f5e4a20c931bb154880d0456038b615fe75145b35882a097aedc9786a48615 |
# DIALS_ENABLE_COMMAND_LINE_COMPLETION
"""
Refine the diffraction geometry of input experiments against the input indexed
reflections. For rotation scans, the model may be either static (the same for
all reflections) or scan-varying (dependent on image number in the scan).
Other basic parameters include control over ou... | dials/dials | command_line/refine.py | Python | bsd-3-clause | 15,684 | [
"CRYSTAL"
] | 2f15d66b7ee8c3ad2a2367f16303a6bc9c52f4607e2ed7ec73f880f12d891537 |
# Version: 0.15 + modifications to avoid the need for setup.cfg to exist.
"""
The Versioneer
==============
* like a rocketeer, but for versions!
* https://github.com/warner/python-versioneer
* Brian Warner
* License: Public Domain
* Compatible With: python2.6, 2.7, 3.2, 3.3, 3.4, and pypy
* [![Latest Version]
(http... | matplotlib/freetypy | versioneer.py | Python | bsd-2-clause | 62,712 | [
"Brian"
] | 5b220cd769b66348f93961bca718970abcf84a50ddb2d1e6c60f07fa018f311a |
#
# Copyright 2018 Analytics Zoo Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to... | intel-analytics/analytics-zoo | pyzoo/zoo/examples/friesian/dlrm/dlrm_preprocessing.py | Python | apache-2.0 | 6,053 | [
"ORCA"
] | 936bde22e7929cd974bb2300811c3573215004c967fd12a5ace9993dc209598c |
"""Functions to make 3D plots with M/EEG data
"""
from __future__ import print_function
# Authors: Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Denis Engemann <denis.engemann@gmail.com>
# Martin Luessi <mluessi@nmr.mgh.harvard.edu>
# Eric Larson <larson.eric.d@gmail.com>
# ... | wronk/mne-python | mne/viz/_3d.py | Python | bsd-3-clause | 40,857 | [
"Mayavi"
] | d10368f7c1ab924c54106bf969624ce54f8ba57b46263e7ef635781d724fd842 |
'''
Basic PointCloud Server.
Just reads in a file from data. ie: chappes.json and
sends that data over a websocket when requested by the
client
'''
import jsonpickle
from read_octopus import read_octree
from tornado import websocket, web, ioloop
from json import load, loads, dumps
from os import listdir
from t... | dayo7116/PointMan-Renderer | server/pointcloud_server.py | Python | gpl-3.0 | 5,110 | [
"Octopus"
] | d8c488c050546708708c95c30a9d45e46ee478fd0d7008b478ef13d658427577 |
# -*- coding: utf-8 -*-
from __future__ import unicode_literals
from django.conf import settings
from django.conf.urls import include, url
from django.conf.urls.static import static
from django.contrib import admin
from django.views.generic import TemplateView
urlpatterns = [
url(r'^$', TemplateView.as_view(templ... | amenasse/grindstone | config/urls.py | Python | bsd-3-clause | 1,306 | [
"VisIt"
] | 876d1367f9ba5a40bf2c0eabdc877d1576e51f472ea97e6dac58d9bc86ca952e |
# -*- coding: utf-8 -*-
from __future__ import unicode_literals
from django.conf import settings
from django.conf.urls import include, url
from django.conf.urls.static import static
from django.contrib import admin
from django.views.generic import TemplateView
from django.conf.urls.i18n import i18n_patterns
from iwgk... | juliancantillo/iwgk | config/urls.py | Python | bsd-3-clause | 1,527 | [
"VisIt"
] | 0361ae8a7481cdb513ecdc4d9c805e944a2f5cb92a8f1b327b7dea074584d850 |
"""Implementation of the WebSocket protocol.
`WebSockets <http://dev.w3.org/html5/websockets/>`_ allow for bidirectional
communication between the browser and server.
WebSockets are supported in the current versions of all major browsers,
although older versions that do not support WebSockets are still in use
(refer ... | wujuguang/tornado | tornado/websocket.py | Python | apache-2.0 | 61,464 | [
"VisIt"
] | 2516be2ce39ec0e78d88f70a7f0fedd8104b03ef2d1272780eea5392ab7dbb89 |
#!/usr/bin/python
# Copyright 2014-2018 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unles... | gkc1000/pyscf | pyscf/pbc/gto/basis/split_GTH_BASIS_SETS.py | Python | apache-2.0 | 1,588 | [
"PySCF"
] | 2821712eb444aaa621f6c4e949f0835935358f72155ae96c0ee44aad24d3f26a |
# disable missing docstring
# pylint: disable=C0111
import json
from lettuce import world, step
from nose.tools import assert_equal, assert_true # pylint: disable=E0611
from common import type_in_codemirror, open_new_course
from advanced_settings import change_value, ADVANCED_MODULES_KEY
from course_import import imp... | xiandiancloud/edxplaltfom-xusong | cms/djangoapps/contentstore/features/problem-editor.py | Python | agpl-3.0 | 12,050 | [
"VisIt"
] | c6134f014a94091d9385289826d8dd08110a17ff29f113bc8e5aa917ae39746f |
import numpy as np
from pics import PrintBinayImage
import random
from utils import PrintMatrix
def NeuralMap(neurons: np.ndarray, n: int, m:int):
"""Print out neural activity"""
L = neurons.reshape(n,m)
PrintBinayImage(L)
def learn_pattern(pat: np.ndarray, n: int ,m: int, connections) -> np.ndarray:
... | janiskuehn/component-based-recognition | basicHopfield/neural.py | Python | gpl-3.0 | 1,394 | [
"NEURON"
] | 1b4d992f7407a169aa8fa300ddaff71445bf4ffac7ce9287fb4902d05497868e |
# Copyright 2017 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | Xeralux/tensorflow | tensorflow/contrib/py2tf/pyct/static_analysis/live_values.py | Python | apache-2.0 | 4,891 | [
"VisIt"
] | e90c05bb84712d21c5abaf9ce9d5c0b6766ff4fe44e0667d33c650866edd6d8a |
# Copyright (c) 2018 PaddlePaddle Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by app... | tensor-tang/Paddle | python/paddle/fluid/initializer.py | Python | apache-2.0 | 31,934 | [
"Gaussian"
] | bd7224ad1132fbd580343f68db9a9099b892330160e159ad080d9191486eb4cb |
import random
import unittest
from hearthbreaker.constants import MINION_TYPE
from tests.agents.testing_agents import PlayAndAttackAgent, OneCardPlayingAgent, CardTestingAgent, \
HeroPowerAndCardPlayingAgent
from tests.testing_utils import generate_game_for
from hearthbreaker.cards import *
from hearthbreaker.agen... | slaymaker1907/hearthbreaker | tests/card_tests/rogue_tests.py | Python | mit | 32,167 | [
"TINKER"
] | 39157c965ce4b6395c631fbbc94d7c256fdbb9d55fee7840ad76395fa62f73ea |
import chempy
from chempy import io
path = chempy.path + 'fragments/'
def get(name):
return io.pkl.fromFile(path+name+'.pkl')
| gratefulfrog/lib | python/chempy/fragments/__init__.py | Python | gpl-2.0 | 134 | [
"ChemPy"
] | e33b0417ce206cfdd8a2c3d09edaa5746c60be5c245ba722735eb2e7d146dc4d |
# Modified to work with Exaile - Brian Parma
#
# Copyright (C) 2008 Erik Hetzner
# This file is part of Spydaap. Spydaap is free software: you can
# redistribute it and/or modify it under the terms of the GNU General
# Public License as published by the Free Software Foundation, either
# version 3 of the License, or (... | exaile/exaile | plugins/daapserver/server.py | Python | gpl-2.0 | 6,350 | [
"Brian"
] | c737c2a7581db6cd85646a6df2d21bc0d0f919bcca1e17b24e6b7a450822adf1 |
# Lint as: python3
# Copyright 2022 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless ... | google/CFU-Playground | third_party/tflite-micro/tensorflow/lite/micro/examples/hello_world/train/train_hello_world_model.py | Python | apache-2.0 | 24,205 | [
"NEURON",
"exciting"
] | 3034af5cf78ccb6fb23eeed235ec44b1ff50955e9c34b59a1452031efd8a0858 |
#!/usr/bin/env python
# encoding: utf-8
# Thomas Nagy, 2010 (ita)
"""
Classes and functions required for waf commands
"""
import os, re, imp, sys
from waflib import Utils, Errors, Logs
import waflib.Node
# the following 3 constants are updated on each new release (do not touch)
HEXVERSION=0x1080c00
"""Constant updat... | RoyalTS/econ-project-templates | .mywaflib/waflib/Context.py | Python | bsd-3-clause | 18,094 | [
"VisIt"
] | 1ee2cbec777a15417c5e8681dd99181d34b58e680364bb8fad7dadda964d9f1d |
# coding: utf-8
"""A tornado based IPython notebook server.
Authors:
* Brian Granger
"""
#-----------------------------------------------------------------------------
# Copyright (C) 2013 The IPython Development Team
#
# Distributed under the terms of the BSD License. The full license is in
# the file COPYING, ... | noslenfa/tdjangorest | uw/lib/python2.7/site-packages/IPython/html/notebookapp.py | Python | apache-2.0 | 29,152 | [
"Brian"
] | 7526b8ba73d3d5d4f0ef7d68c2e666ab11b283f46f15069d21ad9186b6c093cd |
# $Id$
#
# Copyright (C) 2002-2006 greg Landrum and Rational Discovery LLC
#
# @@ All Rights Reserved @@
# This file is part of the RDKit.
# The contents are covered by the terms of the BSD license
# which is included in the file license.txt, found at the root
# of the RDKit source tree.
#
"""unit testing code ... | rvianello/rdkit | rdkit/Chem/EState/UnitTestTypes.py | Python | bsd-3-clause | 2,125 | [
"RDKit"
] | 16877555c07ac107c665c43f2b6a32526bd2ecd8127c3464cff32ef1b2fddcf1 |
#!/usr/bin/python
"""
SUNTANS NetCDF plotting GUI
"""
import os
import wx
# The recommended way to use wx with mpl is with the WXAgg
# backend.
#
import matplotlib
matplotlib.use('WXAgg')
# Set some default parameters
matplotlib.rcParams['text.color']='white'
matplotlib.rcParams['savefig.facecolor']='black'
matplotl... | UT-CWE/Hyospy | Hyospy_ensemble/lib/SUNTANS/DataIO/romsplotpy.py | Python | mit | 21,904 | [
"NetCDF"
] | 94c6e65c1a066d72c75728292f3f67c159cc29ce5419c943f5b902e176f31b77 |
import os
from netCDF4 import Dataset as NCDataset
from dateutil import parser as dateparser
from datetime import datetime
from birdfeeder.utils import humanize_filesize
import logging
logger = logging.getLogger(__name__)
SPATIAL_VARIABLES = [
'longitude', 'lon',
'latitude', 'lat',
'altitude', 'alt', 'l... | bird-house/bird-feeder | birdfeeder/walker.py | Python | apache-2.0 | 5,030 | [
"NetCDF"
] | 298619684decea8d407047f51f572d0cf445ba1b2f57c39f6f0b5358f38245a6 |
# -*- coding: utf-8 -*-
"""
Created on Thu Aug 10 13:22:54 2017
@author: eduardo
"""
from matplotlib import pyplot as plt
import dicom as dcm
import pickle as pkl
import read_inbreast as readin
import scipy
import scipy.ndimage
import cnn_models as models
import tensorflow as tf
import numpy as np
import utils as ut
... | edux300/research | script_full_images_view.py | Python | apache-2.0 | 16,557 | [
"Gaussian"
] | b142dd16814aa5994a470eac469bfb1b51170adb5c5012ed2791570314920805 |
#!/usr/bin/env python
"""decoder_cells.py: Implementation of RNNSearch in Chainer"""
from __future__ import (absolute_import, division, print_function,
unicode_literals)
import logging
import random
import sys
import chainer
import chainer.functions as F
import chainer.links as L
import chaine... | fabiencro/knmt | nmt_chainer/models/decoder_cells.py | Python | gpl-3.0 | 18,977 | [
"Gaussian"
] | 1564e0f56c271cdb44f89b1c3db8341b085fd8fc18f56af1f60da0a0fd01f70e |
"""
FASTA/QUAL format (:mod:`skbio.io.fasta`)
=========================================
.. currentmodule:: skbio.io.fasta
The FASTA file format (``fasta``) stores biological (i.e., nucleotide or
protein) sequences in a simple plain text format that is both human-readable
and easy to parse. The file format was first i... | johnchase/scikit-bio | skbio/io/fasta.py | Python | bsd-3-clause | 36,062 | [
"BLAST",
"scikit-bio"
] | 4e7934d6b2402a2c2505cb1bfcde0b3eb4fcff1c3afa6ef97d4091d0b8923f49 |
# -*- coding: utf-8 -*-
emojis = {
'+1',
'+1_tone1',
'+1_tone2',
'+1_tone3',
'+1_tone4',
'+1_tone5',
'-1',
'-1_tone1',
'-1_tone2',
'-1_tone3',
'-1_tone4',
'-1_tone5',
'100',
'1234',
'8ball',
'a',
'ab',
'abc',
'abcd',
'ac',
'accept',
... | nitely/Spirit | spirit/core/utils/markdown/utils/emoji.py | Python | mit | 36,630 | [
"FLEUR",
"Octopus"
] | ca7b245708df2c134b5e4284f182ed1c99ef895afaf4f196c7741056ca3f0206 |
# Scheduling and web server and all sorts of fancy things!
import configparser
import web.serv
import schedule
import time
import main
import os
import threading
global dashdayjob
global configfile
def start():
global dashdayjob
print("Dashday started at " + time.strftime("%d/%m/%y %H:%M:%S"))
main.st... | mashedkeyboard/Dashday | dashday/dashday.py | Python | mit | 2,458 | [
"VisIt"
] | 588ad5081f86724f046593054fea63bbaa4678c62f5700e9ec54eaf3d99c721c |
'''
Script that shuffles the alleles in a vcf file using multiprocessing
and converts phased genotype calls to unphased
Ordered command-line arguments:
input file path - vcf format +/- gzip, e.g. (/path/to/in.vcf.gz)
output file path - vcf format +/- gzip, e.g. (/path/to/target_dir/out.vcf)
subset file path - newline ... | erscott/Wellderly | SWGR_v1.0/wellderly_shuffle_multiprocess.py | Python | bsd-3-clause | 4,290 | [
"pysam"
] | 6de480bc29a93214515ec9cc4e8d1a6792b46e8297b9d1116aa4dec5074e9b10 |
from __future__ import unicode_literals
import xml.etree.ElementTree
from .common import InfoExtractor
from ..utils import (
ExtractorError,
int_or_none,
)
from ..compat import compat_HTTPError
class BBCCoUkIE(InfoExtractor):
IE_NAME = 'bbc.co.uk'
IE_DESC = 'BBC iPlayer'
_VALID_URL = r'https?://... | apllicationCOM/youtube-dl-api-server | youtube_dl_server/youtube_dl/extractor/bbccouk.py | Python | unlicense | 15,797 | [
"VisIt"
] | 84ae0c665d6282179615e90d1af65d2bd9db6910c4604846a468e0169a8f3470 |
############################################################################
##
## Copyright (C) 2006-2007 University of Utah. All rights reserved.
##
## This file is part of VisTrails.
##
## This file may be used under the terms of the GNU General Public
## License version 2.0 as published by the Free Software Foundat... | VisTrails/vistrails-contrib-legacy | itk/ImageReader.py | Python | bsd-3-clause | 6,390 | [
"VTK"
] | 149b9bb37e50dc3066a808e316545ae397c9bd396e500e493d83a0ee7349128c |
# -*- coding: utf-8 -*-
"""
@package Blast
@brief **Wrapper for Blastn from NCBI Blast**
Please see the Blast+ user manual document for further details
[MANUAL](http://www.ncbi.nlm.nih.gov/books/NBK1762/)
Basically the top level function Blastn.align processes sequences as follow:
* If a blastn database is provided it... | a-slide/pyDNA | Blast/__init__.py | Python | gpl-2.0 | 1,397 | [
"BLAST"
] | 4f0e77abf12cff73275b432eca7e0477f478d5b300c2b0ab833160cd6b366ebd |
# Copyright 2021 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, ... | google-research/DBAP-algorithm | third_party/rlkit_library/rlkit/exploration_strategies/gaussian_and_epsilon_strategy.py | Python | apache-2.0 | 1,817 | [
"Gaussian"
] | c94502a91375e35f5215dfaa1272e97d36c55a5e93a341d8e4ea13266aaff1f4 |
from __future__ import absolute_import
import os.path as op
import numpy as nm
from sfepy.base.conf import transform_variables
from sfepy.base.testing import TestCommon
import six
from six.moves import range
variables = {
'u' : ('unknown field', 'f', 0),
'v' : ('test field', 'f', 'u'),
}
def ... | BubuLK/sfepy | tests/test_mesh_interp.py | Python | bsd-3-clause | 12,513 | [
"VTK"
] | 95125bdf159a0bd565033302097eca08f62eb9afdb7a6bc188ada5bc3af3c0b7 |
# -*- coding: utf-8 -*-
""" Tests for student account views. """
import re
from unittest import skipUnless
from urllib import urlencode
import json
import mock
import ddt
from django.conf import settings
from django.core.urlresolvers import reverse
from django.core import mail
from django.contrib import messages
from... | nttks/edx-platform | lms/djangoapps/student_account/test/test_views.py | Python | agpl-3.0 | 27,368 | [
"VisIt"
] | 61d54b5e628a17bad8e95aace9fe82c152b7be8582057bf0fe8725007944daa2 |
"""
============= DON'T MODIFY THIS FILE ============
This is the boilerplate default configuration file.
Changes and additions to settings should be done in
/bp_content/themes/<YOUR_THEME>/config/ rather than this config.
"""
import os
config = {
# webapp2 sessions
'webapp2_extras.sessions': {'secret_key': ... | roninio/gae-shopify-python-boilerplate | bp_includes/config.py | Python | lgpl-3.0 | 4,881 | [
"VisIt"
] | db0cd91639dd96705903f5861c92f1bfe3efba4f0e3a47fb31b203ec0237fe89 |
#!/usr/bin/env python -Es
"""Run an automated analysis pipeline for high throughput sequencing data.
Handles runs in local or distributed mode based on the command line or
configured parameters.
The <config file> is a global YAML configuration file specifying details
about the system. An example configuration file is... | a113n/bcbio-nextgen | scripts/bcbio_nextgen.py | Python | mit | 11,186 | [
"Galaxy"
] | e3d2959fe834498edd6eb7db90796d0c17e4da8d0b45fce0e402def2968afc24 |
from __future__ import absolute_import
from django.utils.translation import ugettext_lazy as _
from sentry import http, options
from sentry.identity.pipeline import IdentityProviderPipeline
from sentry.identity.github import get_user_info
from sentry.integrations import Integration, IntegrationFeatures, IntegrationPr... | ifduyue/sentry | src/sentry/integrations/github/integration.py | Python | bsd-3-clause | 9,395 | [
"VisIt"
] | 3183928b4e9c02104d303b33581f740874db929eff79b27064dd3e7340e89ba2 |
# -*- coding: utf-8 -*-
"""
This module defines functions to generate predefined completions for PyDev by
introspection of module objects.
"""
from __future__ import absolute_import, print_function, division, unicode_literals
import collections
import inspect
import io
import os
import ast
import astor
PYPREDEF_... | khalim19/pydev-gimp-predefined-completions | pypredefgen_gimp/pypredefgen.py | Python | mit | 19,911 | [
"VisIt"
] | 0af4d30c21637fdcaf30522dee29b5cec8c5d5acf1fc7a2137d01bd261518e8c |
# pylint: disable=missing-docstring
# pylint: disable=redefined-outer-name
import os
from lettuce import world, step
from nose.tools import assert_true, assert_in
from django.conf import settings
from student.roles import CourseStaffRole, CourseInstructorRole, GlobalStaff
from student.models import get_user
from sel... | MakeHer/edx-platform | cms/djangoapps/contentstore/features/common.py | Python | agpl-3.0 | 12,732 | [
"VisIt"
] | 1f80c71be765b52f1a0253b1e0a8462b3222174255e9f0d58f78194f329e40b2 |
# pylint: disable=C0111
# pylint: disable=W0621
from lettuce import world, step
from common import *
from terrain.steps import reload_the_page
from selenium.common.exceptions import InvalidElementStateException
from xmodule.modulestore.locations import SlashSeparatedCourseKey
from contentstore.utils import reverse_cou... | nanolearning/edx-platform | cms/djangoapps/contentstore/features/grading.py | Python | agpl-3.0 | 7,206 | [
"VisIt"
] | c70a0cc227e20097514a62d89453af1fc3771aa2aaa3382eca9e52a76dd8805f |
"""
This class is used to define the plot using the plot attributes.
"""
from DIRAC import S_OK, gLogger
from DIRAC.MonitoringSystem.Client.Types.RMSMonitoring import RMSMonitoring
from DIRAC.MonitoringSystem.private.Plotters.BasePlotter import BasePlotter
__RCSID__ = "$Id$"
class RMSMonitoringPlotter(BasePlotter)... | yujikato/DIRAC | src/DIRAC/MonitoringSystem/private/Plotters/RMSMonitoringPlotter.py | Python | gpl-3.0 | 3,244 | [
"DIRAC"
] | 36f508c94be9ceb86be69c418d038a6e0816ec439e126ae29beb6172eccb3fb3 |
from lettuce import *
from survey.features.page_objects.root import AboutPage, EditAboutUsPage
from survey.models import AboutUs
@step(u'And I visit the about us page')
def and_i_visit_the_about_us_page(step):
world.page = AboutPage(world.browser)
world.page.visit()
@step(u'And I have about us content')
def ... | antsmc2/mics | survey/features/about_us_steps.py | Python | bsd-3-clause | 1,563 | [
"VisIt"
] | 39f288ddef02e4371ff133f6b5af1a0fc22a39e9baae2c7dff2f1e318ddd0717 |
# -*- coding: utf-8 -*-
"""
AONX Server - Pequeño servidor de Argentum Online.
Copyright (C) 2011 Alejandro Santos <alejolp@alejolp.com.ar>
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Fo... | alejolp/argentum-py-server | argentumserver/aoprotocol.py | Python | gpl-3.0 | 14,132 | [
"ASE"
] | ced65370a034379c79bad95c6862ed30f996cac4fbffef2d932afb4e656d2535 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
from __future__ import unicode_literals
import unittest2 as unittest
from pymatgen.command_line.aconvasp_caller import get_num_division_kpoints, \
get_minkowski_red, get_vasp_kpoint_file_sym
from pymatgen... | aykol/pymatgen | pymatgen/command_line/tests/test_aconvasp_caller.py | Python | mit | 1,894 | [
"pymatgen"
] | 6e30c8d5db6bda61a466d9dffd6470d935913a8387b322d3ffa8e221c8c37217 |
#!/usr/bin/python3
# -*- coding: utf-8 -*-
#********************************************************************
# ZYNTHIAN PROJECT: Zynseq Python Wrapper
#
# A Python wrapper for zynseq library
#
# Copyright (C) 2021 Brian Walton <brian@riban.co.uk>
#
#******************************************************************... | zynthian/zynthian-ui | zynlibs/zynseq/zynseq.py | Python | gpl-3.0 | 3,797 | [
"Brian"
] | 1952c2a5a64920b56f6a7dd7e10a955b63dc3a2b397d813f8f77acdebfce49cf |
#!/usr/bin/env python
#
# Dance Marathon Assassins
# Copyright 2012 Dance Marathon at the University of Florida
#
# This product includes software developed by the Dance Marathon at the University of Florida 2013 Technology Team.
# The following developers contributed to this project:
# Matthew Gerstman
#
# Dan... | smith1302/DM-Assassins | users.py | Python | apache-2.0 | 2,887 | [
"VisIt"
] | a02561b4b31d579bd469f69490957e2dcac1059ad7f1b8f738ff63c29783fc38 |
"""
This module contains generic generator functions for traversing tree
(and DAG) structures. It is agnostic to the underlying data structure
and implementation of the tree object. It does this through dependency
injection of the tree's accessor functions: get_parents and
get_children.
The following depth-first tra... | ESOedX/edx-platform | openedx/core/lib/graph_traversals.py | Python | agpl-3.0 | 12,979 | [
"VisIt"
] | bc5b44ba3241e5512932b5e7b66ca8f6a387d5ac1d3ed10bdcd45be34b0d65c1 |
#! /usr/bin/python3
import sys
from lxml import etree as ET
import xml.etree.cElementTree as ET
import pdb
import random
import logging
import xml.dom.minidom
import argparse
import os
import datetime
import requests
import csv
import sqlite3
from xml.dom import minidom
from copy import deepcopy
from collections impor... | hypraptive/bearid | tools/xml_utils.py | Python | mit | 199,254 | [
"Amber"
] | e5a679f6263321d923e4be2a760fcfbf0730335d9355498c07595a2b8404768b |
"""
cclib (http://cclib.sf.net) is (c) 2006, the cclib development team
and licensed under the LGPL (http://www.gnu.org/copyleft/lgpl.html).
"""
__revision__ = "$Revision: 238 $"
import random # For sometimes running the progress updater
import numpy
numpy.inv = numpy.linalg.inv
from calculationmethod import *
cl... | faribas/RMG-Java | source/cclib/method/fragments.py | Python | mit | 5,107 | [
"cclib"
] | cf98f96b0392e25943139c541dd1eff3e579ff74b9f489741491462552a84f58 |
#!/usr/bin/env python
"""Extract n random sequences from a fasta file.
Usage:
%program <input_file> n <output_file>"""
# Importing modules
import sys
import re
import random
try:
from Bio import SeqIO
except:
print "This program requires the Biopython library"
sys.exit(0)
# Parsing user input
try:
... | enormandeau/ngs_genotyping | scripts/fasta_reservoir_sampling.py | Python | gpl-3.0 | 1,001 | [
"Biopython"
] | ec2dc3fc33ac97c04c617476c719a27442a6f099fd9125e5f0fe7a2c329a3008 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
# Licensed to Cloudera, Inc. under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. Cloudera, Inc. licenses this file
# to you under the Apache License, Version 2.0 (... | yoer/hue | apps/useradmin/src/useradmin/tests.py | Python | apache-2.0 | 40,425 | [
"MOE"
] | 01ba2559d9b49193d03ec6a41b426115983c3407f289cafc1dd82f4baa85ac59 |
from django.core.urlresolvers import reverse
from django.db import models
# from edc_base.audit_trail import AuditTrail
from edc_base.model.models import BaseUuidModel
from edc_export.models import ExportTrackingFieldsMixin
from edc_sync.models import SyncModelMixin, SyncHistoricalRecords
from lis.specimen.lab_aliquot... | TshepangRas/tshilo-dikotla | td_lab/models/aliquot.py | Python | gpl-2.0 | 3,168 | [
"VisIt"
] | 249494f25ffd0f8cb1a4d9d5b513ee85850be3ad1a9925f91985c17082d43c8a |
#!/usr/bin/env python
__version__ = '3.3.2'
__author__ = "Avinash Kak (kak@purdue.edu)"
__date__ = '2014-March-12'
__url__ = 'https://engineering.purdue.edu/kak/dist/BitVector-3.3.2.html'
__copyright__ = "(C) 2014 Avinash Kak. Python Software Foundation."
__doc__ = '''
BitVector.py
Version: ''' + __... | felipet/crip | src/BitVector.py | Python | apache-2.0 | 146,371 | [
"Brian"
] | b14ac5430f8e7fbb82dbfc854da61715e4e1cd2fa55fd1840cdabe21bc5e258a |
"""
Authors: Tim Bedin (Tim.Bedin@csiro.au)
Tim Erwin (Tim.Erwin@csiro.au)
Damien Irving (irving.damien@gmail.com)
Craig Heady (craig.heady@csiro.au)
Copyright 2015 CSIRO
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with... | taerwin/cwsl-mas | cwsl/vt_modules/vt_clim_statistics.py | Python | apache-2.0 | 8,174 | [
"NetCDF"
] | 3da63868c7076121d604b39ebfa7d6b03186d3e73d3ea3964f4959cbe5646591 |
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2000-2006 Donald N. Allingham
# Copyright (C) 2008 Brian G. Matherly
# Copyright (C) 2010 Jakim Friant
# Copyright (C) 2011 Paul Franklin
#
# This program is free software; you can redistribute it and/or modify
# it under the terms o... | SNoiraud/gramps | gramps/gui/plug/_windows.py | Python | gpl-2.0 | 51,290 | [
"Brian"
] | 9d2607c1f7c6b736bf6700baaf0af0e8a8378459fad5007fcd5f1edeebdab9cd |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
import json
import random
from collections import namedtuple
import pytest
from marshmallow import Schema, fields, utils, MarshalResult, UnmarshalResult
from marshmallow.exceptions import ValidationError
from marshmallow.compat import unicode, OrderedDict
from tests.bas... | VladimirPal/marshmallow | tests/test_schema.py | Python | mit | 72,460 | [
"Brian"
] | 79870a0eaa1c508f6d7e629e67be6822ac502eb5d8feb351372773df31cd3edc |
"""
Artificial Intelligence for Humans
Volume 2: Nature-Inspired Algorithms
Python Version
http://www.aifh.org
http://www.jeffheaton.com
Code repository:
https://github.com/jeffheaton/aifh
Copyright 2014 by Jeff Heaton
Licensed under the Apache License, Version 2.0 (the "License")... | PeterLauris/aifh | vol2/vol2-python-examples/lib/aifh/error.py | Python | apache-2.0 | 1,422 | [
"VisIt"
] | d2732bb2c5cdceab5857feee3f82ead433877e86633bda3ab6352062ee5c570c |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2021 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute it and/or modify
#... | lothian/psi4 | psi4/driver/qcdb/util/mpl.py | Python | lgpl-3.0 | 2,303 | [
"Psi4"
] | e0ff6c98f4377e826deb701d7c932961914fbb0ba503953b235dfaa1591d8ad6 |
# mako/_ast_util.py
# Copyright (C) 2006-2013 the Mako authors and contributors <see AUTHORS file>
#
# This module is part of Mako and is released under
# the MIT License: http://www.opensource.org/licenses/mit-license.php
"""
ast
~~~
The `ast` module helps Python applications to process trees of the Pyth... | akuchling/book-diary-tools | books.d/mako/_ast_util.py | Python | bsd-3-clause | 25,676 | [
"VisIt"
] | 6a26ae3704c6079db23a0c566f76073bc139ec3bf8691a91ee016086a87c9162 |
# proxy module
from __future__ import absolute_import
from mayavi.filters.triangle_filter import *
| enthought/etsproxy | enthought/mayavi/filters/triangle_filter.py | Python | bsd-3-clause | 99 | [
"Mayavi"
] | 594b635c99c5a6518de22ef48c5d6747fe76069d7471fdc8a2f4f93d2892db5d |
# Orca
#
# Copyright 2006-2009 Sun Microsystems Inc.
# Copyright 2010 Joanmarie Diggs
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version 2.1 of the License, or (at your op... | GNOME/orca | src/orca/scripts/toolkits/J2SE-access-bridge/script.py | Python | lgpl-2.1 | 8,702 | [
"ORCA"
] | c51f43bc47e9d087720035705304c3b17c874249a1618a5814e716f1ff3a45aa |
# Copyright 2001 by Tarjei Mikkelsen. All rights reserved.
# Copyright 2007 by Michiel de Hoon. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
"""Code to work with the KEGG En... | poojavade/Genomics_Docker | Dockerfiles/gedlab-khmer-filter-abund/pymodules/python2.7/lib/python/Bio/KEGG/Enzyme/__init__.py | Python | apache-2.0 | 10,978 | [
"Biopython"
] | 76c648c536bd4b02f4ccc8b8afd7be743c00440dc037523fe3f354d2ca23e85f |
"""
Helper functions for Poisson processes
"""
import numpy as np
import logging
log = logging.getLogger("global_log")
def sampleInhomogeneousPoissonProc(tt, lam):
"""
Sample an inhomogeneous Poisson process with rate lam and times tt using
the time-rescaling theorem. Integrate the rate from [0,t) to get ... | slinderman/pyhawkes | pyhawkes/utils/poisson_process.py | Python | mit | 4,125 | [
"Gaussian"
] | e2fc574afa87f26d9e58214bddfbbd1caa38ad6c97df66023bdbff42d1b10847 |
''' Significant lifting from https://jmetzen.github.io/2015-11-27/vae.html '''
import time
import numpy as np
import tensorflow as tf
from tensorflow.python.ops import rnn
import random
import matplotlib.pyplot as plt
import re, string
from sklearn.feature_extraction.text import CountVectorizer
from collections impo... | dricciardelli/vae2vec | vae_def_gen.py | Python | mit | 28,216 | [
"Gaussian"
] | dc47b55f1fe554c69d02c7a735457bb15054e49167c2f453bcbfb88d306b634a |
import numpy as np
import matplotlib.pylab as plt
import h5py
fl=h5py.File('test.h5');
k=fl['/fields/k'].value[0]
u=fl['/fields/u'].value
u=u['real']+1j*u['imag']
fid = open ("out68.vtk", "w");
fid.write("# vtk DataFile Version 3.0\n");
fid.write("patates\n");
fid.write("ASCII\nDATASET UNSTRUCTURED_GRID\n");
fid.writ... | gurcani/dins | vtkgen.py | Python | gpl-2.0 | 1,152 | [
"VTK"
] | 5dbdc916951937a16c76738175246aa58394ed6b17fd8c216e23ccd31dc7ae7d |
""" :mod: OperationTests
====================
.. module: OperationTests
:synopsis: Operation test cases
.. moduleauthor:: Krzysztof.Ciba@NOSPAMgmail.com
Operation test cases
"""
import pytest
from DIRAC.RequestManagementSystem.Client.File import File
from DIRAC.RequestManagementSystem.Client.Oper... | DIRACGrid/DIRAC | src/DIRAC/RequestManagementSystem/Client/test/Test_Operation.py | Python | gpl-3.0 | 3,804 | [
"DIRAC"
] | b8575351bfe5eb5d9892bb040f74db8f929671403b84d3e45ff3972142cf081a |
# -*- coding: utf-8 -*-
"""
Created on Sun Jun 02 12:33:54 2013
@author: Shreejoy
"""
# code to import shawn's annotation of OB data
from xml.etree.ElementTree import XML
from urllib import quote_plus, quote
from urllib2 import Request, urlopen, URLError, HTTPError
import neuroelectro.models as m
fr... | neuroelectro/neuroelectro_org | db_functions/shawn_ephys_annotation_import.py | Python | gpl-2.0 | 12,414 | [
"NEURON"
] | d4df8ed281bb2c80424efeae34201738093bf8ca4c6a9731ccea0071ef83f1fa |
#===============================================================================
# LICENSE XOT-Framework - CC BY-NC-ND
#===============================================================================
# This work is licenced under the Creative Commons
# Attribution-Non-Commercial-No Derivative Works 3.0 Unported Li... | SMALLplayer/smallplayer-image-creator | storage/.xbmc/addons/net.rieter.xot.smallplayer/resources/libs/helpers/prefixhelper.py | Python | gpl-2.0 | 2,486 | [
"VisIt"
] | 03c7a34d7c3f958da61e148b3bc288b038c1c443e34d6d407ef2f1931522f2b3 |
# -*- coding: utf-8 -*-
#
# BrodyHopfield.py
#
# This file is part of NEST.
#
# Copyright (C) 2004 The NEST Initiative
#
# NEST is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 2 of the License, ... | espenhgn/nest-simulator | pynest/examples/BrodyHopfield.py | Python | gpl-2.0 | 4,218 | [
"Gaussian",
"NEURON"
] | 632fab85197141c7580bcad383a4216f4052dec92ebe884b26b09e8396b75fcb |
# Copyright 2016 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | rabipanda/tensorflow | tensorflow/python/ops/distributions/distribution.py | Python | apache-2.0 | 41,704 | [
"Gaussian"
] | 21b6ff26432f712093dd5fd160bbd3098669cb5020b970a8482e237cce4ae093 |
# -*- coding: utf-8 -*-
#!/usr/bin/env python
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2000-2007 Donald N. Allingham
# Copyright (C) 2007 Johan Gonqvist <johan.gronqvist@gmail.com>
# Copyright (C) 2007-2009 Gary Burton <gary.burton@zen.co.uk>
# Copyright (C) 2007-2009 Stephane Charet... | prculley/gramps | gramps/plugins/webreport/source.py | Python | gpl-2.0 | 12,153 | [
"Brian"
] | 940a50b0563548415921c5188707204f544ade634cacf7cd76a956074ffc2489 |
#!/usr/bin/env python
import sys, re, os, string, exceptions, os.path, argparse
from collections import defaultdict
#better option processing
parser = argparse.ArgumentParser(description="Read a directory of OMA output and a directory of parsed GFF files and extract missing proteins.")
parser.add_argument('hog', help... | tsackton/ratite-genomics | 03_homology/00_gff_parsing/oma_output_parser.py | Python | gpl-3.0 | 4,571 | [
"Biopython"
] | d6c2b2c0ef36ecb5f3127206d6cb9622342c83b72529c65f85944015e347645d |
# -*- coding: utf-8 -*-
import math
from ..eyring import eyring_equation, EyringParam, EyringParamWithUnits
from chempy.util.testing import requires
from chempy.units import allclose, units_library, default_units as u
_kB_over_h = 2.083664399411865234375e10
_R = 8.314472
def test_eyring_equation():
dH, dS = ... | bjodah/aqchem | chempy/kinetics/tests/test_eyring.py | Python | bsd-2-clause | 1,007 | [
"ChemPy"
] | c213b7a8e32a8a96776642ebf59bdce4542f1289f6dd894f9f7cc46ab7a1d4dd |
#!/usr/bin/env python
# coding: utf-8
# In[1]:
import sys
def download(url, file):
import urllib3
import shutil
import os
if os.path.isfile(file):
return True
try:
urllib3.disable_warnings()
http = urllib3.PoolManager()
print('downloading {:} ...'.format(file))
... | skuschel/postpic | examples/kspace-test-2d.py | Python | gpl-3.0 | 9,839 | [
"Gaussian"
] | 2993bc47f07f3f355435366ef1020237871312120a566ebfb46f4e97a3a7e5a1 |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2017 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute it and/or modify
#... | jH0ward/psi4 | psi4/driver/procrouting/sapt/__init__.py | Python | lgpl-3.0 | 950 | [
"Psi4"
] | 5e3719d05f63c10abb885cbfb100cd70fdeeb4b50cc7a1281dc192adffb3415c |
import sugartensor as tf
import matplotlib.pyplot as plt
__author__ = 'namju.kim@kakaobrain.com'
# set log level to debug
tf.sg_verbosity(10)
#
# hyper parameters
#
batch_size = 100 # batch size
num_dim = 50 # latent dimension
#
# inputs
#
#
# Computational graph
#
# random gaussian seed
z = tf.random_n... | buriburisuri/sugartensor | sugartensor/example/mnist_vae_eval.py | Python | mit | 1,252 | [
"Gaussian"
] | 0f65d0a6ce81e292c4ec778e36063fa1d52a0b0b3f77e3bd8a2da846c32a4f97 |
from __future__ import division
from sklearn.utils.extmath import logsumexp
from sklearn.utils import check_random_state
from sklearn.base import BaseEstimator
import numpy as np
import random, collections
import scipy.sparse
# Author: Gustav Larsson
# Mark Stoehr <stoehr.mark@gmail.com>
#
EPS = np.finfo(... | jiajunshen/partsNet | pnet/bernoullimm.py | Python | bsd-3-clause | 27,285 | [
"Gaussian"
] | 7f5cae05355142e9bf24559538b39ea8a23ff7bced6920f5c10e34281cbf3236 |
"""Utils for data input/output"""
import glob
import itertools
import math
import os
from collections import defaultdict
import numpy as np
import tensorflow as tf
def gaussian_mixture(num_clusters=5,
scale=1.0,
stddev=0.2,
batch_size=64,
... | shaform/DeepNetworks | deep_networks/data_util.py | Python | apache-2.0 | 8,021 | [
"Gaussian"
] | 0a51b75ce3ede4cccc4526a6b4d20981e074c4c829156520430f3617948897a7 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
This module provides classes for calculating the ewald sum of a structure.
"""
from math import pi, sqrt, log
from datetime import datetime
from copy import deepcopy, copy
from warnings import warn
import ... | mbkumar/pymatgen | pymatgen/analysis/ewald.py | Python | mit | 25,344 | [
"GULP",
"pymatgen"
] | e2dd5fc193321a888e54e0cd91fe1557519f53089286916956a558f9e7b6f284 |
"""
refcounting
~~~~~~~~~~~
Reference count annotations for C API functions. Has the same
result as the sphinx.ext.refcounting extension but works for all
functions regardless of the signature, and the reference counting
information is written inline with the documentation instead of a
sepa... | karakurihiden/mariadb-udf-zmq | third_party/jansson/doc/ext/refcounting.py | Python | mit | 1,715 | [
"VisIt"
] | 132868c404eb3183dfa9297ea92deb45332e271d55b1aaaf051edf5719c8de4e |
import numpy as np
import mdtraj as md
from mdtraj.testing import eq, get_fn
random = np.random.RandomState(0)
def compute_neighbors_reference(traj, cutoff, query_indices, haystack_indices=None):
if haystack_indices is None:
haystack_indices = range(traj.n_atoms)
# explicitly enumerate the pairs of que... | mpharrigan/mdtraj | mdtraj/geometry/tests/test_neighbors.py | Python | lgpl-2.1 | 1,408 | [
"MDTraj"
] | 8d13c18bab186088a61d67e639943ff4892b6fd1cb6efe9b1327d4a99649c3b0 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
from __future__ import unicode_literals
"""
This module provides classes to define everything related to band structures.
"""
__author__ = "Geoffroy Hautier, Shyue Ping Ong, Michael Kocher"
__copyright__ = "C... | migueldiascosta/pymatgen | pymatgen/electronic_structure/bandstructure.py | Python | mit | 41,234 | [
"CRYSTAL",
"pymatgen"
] | 5aa6055d06a6354fcbf931e926bc0f9cd50c11611db1e45c5535a6d73785c80c |
# Version: 0.12
"""
The Versioneer
==============
* like a rocketeer, but for versions!
* https://github.com/warner/python-versioneer
* Brian Warner (modified by Florian Wilhelm and Felix Wick)
* License: Public Domain
* Compatible With: python2.6, 2.7, 3.2, 3.3, 3.4, and pypy
[![Build Status](https://travis-ci.org... | freemindhv/tq-python | versioneer.py | Python | gpl-2.0 | 38,214 | [
"Brian"
] | 2da8c3f1796dd64aa5c91e05bc296041677972dad7bbfda327e5a7392874aa1d |
import numpy as np
from matplotlib import pyplot as plt
from mpl_toolkits.mplot3d import Axes3D
from matplotlib import cm
import os
print(os.getcwd())
# Part 1: Load the data and separate it into three arrays; one for each class
data = np.loadtxt("MLE1_iris.data")
data0 = data[0:50,:]
data1 = data[50:100,:]
data2 = d... | orhaneee/machineLearning | MLE1.py | Python | gpl-3.0 | 7,728 | [
"Gaussian"
] | 2585f72cc62c5f52362ba5efc4a29455952881fbb60ef0e8e7658063494deb5c |
"""
This is a DIRAC WMS administrator interface.
It exposes the following methods:
Site mask related methods:
setMask(<site mask>)
getMask()
Access to the pilot data:
getWMSStats()
"""
__RCSID__ = "$Id$"
from types import DictType, ListType, IntType, LongType, StringTypes, StringType, FloatType
from D... | Sbalbp/DIRAC | WorkloadManagementSystem/Service/WMSAdministratorHandler.py | Python | gpl-3.0 | 20,982 | [
"DIRAC"
] | 67d3a4ebc132715cc9e3d7e5ddf3e9cd5bd64a8a34fe8c7d2ff444624dc11b5d |
#!/usr/bin/env python
# Copyright 2014-2020 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | gkc1000/pyscf | pyscf/solvent/test/test_ddpcm.py | Python | apache-2.0 | 1,402 | [
"PySCF"
] | 52c4e144eb83520cb3236bbe4fa79787c23ea4ec413f08b586b60d3fba0444c7 |
from __future__ import unicode_literals
from arpeggio import PTNodeVisitor, visit_parse_tree
from arpeggio import Optional, EOF
from arpeggio import ZeroOrMore as ArpeggioZeroOrMore
from arpeggio import RegExMatch as _
from textx.six import string_types
def rrel_id():
return _(r'[^\d\W]\w*\b') # from lang.py
d... | igordejanovic/textX | textx/scoping/rrel.py | Python | mit | 19,117 | [
"VisIt"
] | c4294bc02a63b8ca29b749c3b552da45e8546ac7d8e9749feca4098aa664fbdd |
import os
import re
from .svg import Svg
MARGIN_X = 50
MARGIN_Y = 50
MAGNIFICATION = 500
MIN_D = 1
MAX_D = 4
DIMMEST_MAG = 6
BRIGHTEST_MAG = -1.5
MAPPING = {
"677": "Alpheratz",
"5447": "Mirach",
"7719": "And Chi-52",
"3092": "And Delta-31",
"3031": "And Epsilo-30",
"4463": "And Eta-38",
... | ogun/starmap | starcharts/diagram.py | Python | mit | 82,077 | [
"Psi4"
] | 39c6af5de48974a9e6e63e9be4a53ce2e644838d8aedf99712119901fa210d65 |
from testlink.testlinkerrors import TLResponseError
class TestReporter(dict):
def __init__(self, tls, testcases, *args, **kwargs):
"""This can be given one or more testcases, but they all must have the same project, plan, and platform."""
super(TestReporter, self).__init__(*args, **kwargs)
... | Brian-Williams/TestLink-API-Python-client | src/testlink/testreporter.py | Python | apache-2.0 | 9,446 | [
"Brian"
] | 78e38fd6787ebcb82b308272498e9d8e7fc3b6626ea4f05e888abdaf65a4bdbc |
# -*- coding: utf-8 -*-
# Copyright 2015-TODAY LasLabs Inc.
# License MIT (https://opensource.org/licenses/MIT).
from carepoint import Carepoint
from sqlalchemy import (Column,
Integer,
String,
DateTime,
Boolean,
... | laslabs/Python-Carepoint | carepoint/models/cph/doctor.py | Python | mit | 2,547 | [
"CPMD"
] | 7d3b893657cf943a2ed42cef59c1c5acec64580de6fe543dc0d2c4649c791724 |
########################################################################
# $HeadURL $
# File: FileCatalogHandler.py
########################################################################
"""
:mod: FileCatalogHandler
.. module: FileCatalogHandler
:synopsis: FileCatalogHandler is a simple Replica and Metadata Cat... | calancha/DIRAC | DataManagementSystem/Service/FileCatalogHandler.py | Python | gpl-3.0 | 27,411 | [
"DIRAC"
] | cbd05252fba4b8101cc6e85daf75ab97db77f4c139b67cfc97d319914fb4b58d |
from nose.tools import assert_equal
from data_tracking import files_recording
from data_tracking import connection
import os
if 'DB_URL' in os.environ:
DB_URL = os.environ['DB_URL']
else:
DB_URL = 'postgresql://postgres:postgres@localhost:5433/postgres'
class TestFilesRecording:
def __init__(self):
... | LREN-CHUV/mri-meta-extract | tests/unit_test.py | Python | apache-2.0 | 7,544 | [
"VisIt"
] | 1649fbb3e8ab073aaffc6d6d95e3e3ddb1609e48a18da21bedf0cc8c87756586 |
#
# GFSK modulation and demodulation.
#
#
# Copyright 2005-2007,2012 Free Software Foundation, Inc.
#
# This file is part of GNU Radio
#
# SPDX-License-Identifier: GPL-3.0-or-later
#
#
# See gnuradio-examples/python/digital for examples
from math import log as ln
import numpy
from gnuradio import gr
from gnuradio i... | dl1ksv/gnuradio | gr-digital/python/digital/gfsk.py | Python | gpl-3.0 | 12,225 | [
"Gaussian"
] | 9120dad65ef49605cf0fa7e0e191dae84d5711ecd41bb7b585a9345a9968342d |
# coding: utf-8
"""
PyKrige
=======
Code by Benjamin S. Murphy and the PyKrige Developers
bscott.murphy@gmail.com
Summary
-------
Contains class UniversalKriging3D.
References
----------
.. [1] P.K. Kitanidis, Introduction to Geostatistcs: Applications in
Hydrogeology, (Cambridge University Press, 1997) 272 p.
.... | bsmurphy/PyKrige | pykrige/uk3d.py | Python | bsd-3-clause | 49,090 | [
"Gaussian"
] | 8fab263ecbae9a6c3d5299c0e03b8149fc605fb38fbabe51247044a8db9c9a05 |
##################################################################
# Code for networks and whatnot to use in variationalish stuff. #
##################################################################
# basic python
import numpy as np
import numpy.random as npr
from collections import OrderedDict
import cPickle
# the... | capybaralet/Sequential-Generation | InfNet.py | Python | mit | 29,149 | [
"Gaussian"
] | 8e182ce08c99536f9f54e4200767a813b512af9c7f7f671318e127933529296d |
#
# Copyright (C) University College London, 2007-2012, all rights reserved.
#
# This file is part of HemeLB and is provided to you under the terms of
# the GNU LGPL. Please see LICENSE in the top level directory for full
# details.
#
from math import sqrt
from vtk import vtkProgrammableFilter, vtkPoints, vtkFloatA... | jenshnielsen/hemelb | Tools/setuptool/HemeLbSetupTool/Model/SideLengthCalculator.py | Python | lgpl-3.0 | 1,756 | [
"VTK"
] | 7d3483a3547b70f402cb9afbff931bee2323ac394eeda8a4db673eaa57186862 |
#A* -------------------------------------------------------------------
#B* This file contains source code for the PyMOL computer program
#C* Copyright (c) Schrodinger, LLC.
#D* -------------------------------------------------------------------
#E* It is unlawful to modify or remove this copyright notice.
#F* -------... | gratefulfrog/lib | python/pymol/invocation.py | Python | gpl-2.0 | 17,379 | [
"PyMOL"
] | b01fd0aa398abbaf21c2dadee7aff0d3b69b902331ff72783616247769e3ad75 |
# Copyright (c) 2012, GPy authors (see AUTHORS.txt).
# Licensed under the BSD 3-clause license (see LICENSE.txt)
import numpy as np
from ..core.sparse_gp_mpi import SparseGP_MPI
from .. import kern
from ..core.parameterization import Param
from ..likelihoods import Gaussian
from ..core.parameterization.variational im... | ptonner/GPy | GPy/models/ss_gplvm.py | Python | bsd-3-clause | 9,690 | [
"Gaussian"
] | 0133ec438ebff55343ed0b690830c74c76078acc19dedf5883e0b0937180888c |
Subsets and Splits
No community queries yet
The top public SQL queries from the community will appear here once available.