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# -*- coding: utf-8 -*-
import random
import openerp
from openerp import SUPERUSER_ID, tools
import openerp.addons.decimal_precision as dp
from openerp.osv import osv, orm, fields
from openerp.addons.web.http import request
from openerp.tools.translate import _
from openerp.exceptions import UserError
class sale_ord... | orchidinfosys/odoo | addons/website_sale/models/sale_order.py | Python | gpl-3.0 | 23,429 | [
"VisIt"
] | cbfcd7344dfe7e6f9edaeffe34e0d473e8790e5d4e45d43821c3939fbbeb1417 |
# -*- coding: utf-8 -*-
"""
Representation of nodes in Document
"""
from expanders import *
__all__ = ['Node', 'TextNode']
class Node(object):
def __init__(self):
self.parent = None
self.children = []
self.actual_text_content = None # actual TextNode to fill data in
self.last_add... | andrejtokarcik/python-sneakylang | sneakylang/node.py | Python | bsd-3-clause | 2,618 | [
"VisIt"
] | 5e50ab4d8bf758d0401a847dbafa191c888e629e8b0218e65f5014eca5eb25e5 |
from __future__ import print_function
import sys
from time import ctime
import numpy as np
from ase.units import Hartree
import gpaw.mpi as mpi
from gpaw import extra_parameters
from gpaw.occupations import FermiDirac
from gpaw.utilities.timing import timer
from gpaw.utilities.memory import maxrss
from gpaw.response... | robwarm/gpaw-symm | gpaw/response/chi0.py | Python | gpl-3.0 | 22,249 | [
"ASE",
"GPAW"
] | bc7494d23ff9aed437732a6cac26cf50d6439314c821d9b3eb8c4afe7795cdbd |
# encoding: utf-8
"Module for performing energy minimization."
import gtk
from ase.gui.simulation import Simulation
from ase.gui.widgets import oops, pack, AseGuiCancelException
import ase
import numpy as np
class MinimizeMixin:
minimizers = ('BFGS', 'BFGSLineSearch', 'LBFGS', 'LBFGSLineSearch', 'MDMin', 'FIRE')... | slabanja/ase | ase/gui/minimize.py | Python | gpl-2.0 | 5,318 | [
"ASE"
] | 11fcb58159a65e273c392ce62ae51a818b2ef934c06775458390e66e62802733 |
"""WGS primary analysis (GVCF)."""
from resolwe.process import (
BooleanField,
Data,
DataField,
FloatField,
GroupField,
IntegerField,
ListField,
Process,
StringField,
)
from resolwe.process.models import Process as BioProcess
class WorkflowWgsGvcf(Process):
"""Whole genome sequ... | genialis/resolwe-bio | resolwe_bio/processes/workflows/wgs_gvcf.py | Python | apache-2.0 | 15,751 | [
"BWA"
] | 5653adc390bed53a2f94c12ae4962d86566866208fd8b38d311ba49ee3641a1a |
#!C:\OSGEO4~1\bin\python.exe
# ******************************************************************************
# $Id: gdal_sieve.py 8e263710cb425c4a8b76b1f363b98be41ea0a983 2018-04-30 19:40:20 +1000 Ben Elliston $
#
# Project: GDAL Python Interface
# Purpose: Application for applying sieve filter to raster dat... | kubaszostak/gdal-dragndrop | osgeo/apps/Python27/Scripts/gdal_sieve.py | Python | mit | 7,339 | [
"NetCDF"
] | a3832347c9b49e80ed52f6d9affe5ca4c2d2fdd3f5be03eda7f7301183223e7b |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
Abinit Post Process Application
author: Martin Alexandre
last edited: May 2013
"""
import sys,os
import string
from PyQt4 import Qt,QtGui,QtCore
#utility
import utility.global_variable as var
#utility
import reading.read_graph as ReadGraph
class OpenGraph(QtGui.QD... | jmbeuken/abinit | scripts/post_processing/appa/gui/open_graph.py | Python | gpl-3.0 | 4,135 | [
"ABINIT"
] | 66cb6195dd57dc7df00b2487ece8826e3bd084685ffffd25f4bf7d3478f43868 |
# pytest framework ---------------------------------------------
import requests
from rs4 import siesta, webtest
from rs4.psutil import Puppet, processutil
import subprocess
import time
import sys
import os
import xmlrpc.client
class Launcher (webtest.Target):
def __init__ (self, script, port, ssl = False, silent ... | hansroh/skitai | skitai/testutil/launcher.py | Python | mit | 2,578 | [
"SIESTA"
] | 39b2d916cafb72680aade38c098579a9a6d5c52249a21ba390510799622a55a2 |
# -*- coding: utf-8 -*-
# Copyright (C) 2012, Almar Klein
#
# Visvis is distributed under the terms of the (new) BSD License.
# The full license can be found in 'license.txt'.
import numpy as np
import visvis as vv
import zlib, base64
# todo: parameterize; allow custum Gaussian blobs at specified positions.
if Fals... | pbfy0/visvis | functions/peaks.py | Python | bsd-3-clause | 13,422 | [
"Gaussian",
"MOE"
] | b101e65856205459261297df5fe75ec45b925dde2454d98e1f9b4f84448e496e |
# objectedit.py ---
#
# Filename: objectedit.py
# Description:
# Author: Subhasis Ray
# Maintainer:
# Created: Wed Jun 30 11:18:34 2010 (+0530)
# Version:
# Last-Updated: Wed Mar 28 14:26:59 2014 (+0530)
# By: Harsha
# Update #: 917
# URL:
# Keywords:
# Compatibility:
#
#
# Commentary:
#
# This code is f... | dilawar/moose-full | moose-gui/objectedit.py | Python | gpl-2.0 | 18,617 | [
"MOOSE"
] | c8ca116ee37ecc593508d24a3d5609e117d15b132e9c25c5d91ae7d72459b8e2 |
# coding=utf8
#
# Copyright 2013 Dreamlab Onet.pl
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation;
# version 3.0.
# This library is distributed in the hope that it will be useful,
# bu... | tikan/rmock | src/rmock/runners/smtp/server.py | Python | lgpl-3.0 | 9,153 | [
"VisIt"
] | 7e0c9647866aafe340d34590ec3ae032d6dea627f89672adb0b2b81c81dce282 |
# -*- coding: utf-8 -*-
import ast
import base64
import csv
import functools
import glob
import itertools
import logging
import operator
import datetime
import hashlib
import os
import re
import simplejson
import time
import urllib
import urllib2
import urlparse
import xmlrpclib
import zlib
from xml.etree import Eleme... | MarkusTeufelberger/openerp-web | addons/web/controllers/main.py | Python | agpl-3.0 | 70,131 | [
"VisIt"
] | e728ad9eec58dc3e6052729ad6cb4591370ab3f9dff54981a2dc9bad31ce4864 |
#!/usr/bin/env python
# Copyright 2014-2018 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | sunqm/pyscf | pyscf/pbc/dft/test/test_multigrid.py | Python | apache-2.0 | 17,666 | [
"PySCF"
] | b94eca6a747e82b191e409a2e4a19521f4e1907cd165f292668d4a505f8ed5f8 |
# Copyright 2009-2014 Eucalyptus Systems, Inc.
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; version 3 of the License.
#
# This program is distributed in the hope that it will be useful,
# b... | eucalyptus/eucalyptus-database-server | eucadb/__init__.py | Python | bsd-2-clause | 7,398 | [
"VisIt"
] | d14811b8d3fd2ecba99e29fda79431939fafe864857b4025bb39f7151affa7e2 |
# -*- coding: utf-8 -*-
# Copyright (C) 2017 - 2018 by Pedro Mendes, Virginia Tech Intellectual
# Properties, Inc., University of Heidelberg, and University of
# of Connecticut School of Medicine.
# All rights reserved.
# Copyright (C) 2010 - 2016 by Pedro Mendes, Virginia Tech Intellectual
# Properties, Inc., Un... | copasi/COPASI | copasi/bindings/python/examples/example7.py | Python | artistic-2.0 | 6,974 | [
"COPASI"
] | 298b9cf7085df981d2adeaf3c754e13330082460f1ecf9b2e1d67faac8a990f7 |
import factory
from django.contrib.auth import get_user_model
from django.contrib.sites.shortcuts import get_current_site
from django.contrib.auth import views as auth_views
from django.core import mail
from django.core.urlresolvers import reverse
from connect.accounts import factories
from connect.accounts import vi... | nlhkabu/connect | connect/accounts/tests/test_views.py | Python | bsd-3-clause | 15,271 | [
"VisIt"
] | 302e20ebfbb27b6ca4b064ae2e597aee4c6d87cee262cb06b4d5def52e0a0734 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
################################################################################
#
# RMG - Reaction Mechanism Generator
#
# Copyright (c) 2002-2010 Prof. William H. Green (whgreen@mit.edu) and the
# RMG Team (rmg_dev@mit.edu)
#
# Permission is hereby granted, free of c... | chatelak/RMG-Py | rmgpy/data/thermo.py | Python | mit | 61,952 | [
"VisIt"
] | 7170afea03457e2304bfa7f1e8adfbc29c3903ea41d09090271bca03a7af26ac |
import re
import logging
import lib.const as C
import lib.visit as v
from .. import util
from ..meta import methods, classes, class_lookup
from ..meta.template import Template
from ..meta.clazz import Clazz
from ..meta.method import Method
from ..meta.field import Field
from ..meta.statement import Statement, to_stat... | plum-umd/pasket | pasket/decode/singleton.py | Python | mit | 3,768 | [
"VisIt"
] | 9ce757418892bfaa0bcd92ffc12a39e5c87d98160905604aa8493e11258ff7ca |
#!/usr/bin/env python3
# (C) 2016, Markus Wildi, wildi.markus@bluewin.ch
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2, or (at your option)
# any later version.
#
# ... | jstrobl/rts2 | scripts/u_point/u_select.py | Python | lgpl-3.0 | 9,273 | [
"VisIt"
] | b434a3fcaca7a01d8b3a4ba202bd2d27c8db58136cb7215f704f69607f6ef5f1 |
"""
This is the File StorageClass, only meant to be used localy
"""
__RCSID__ = "$Id$"
import os
import shutil
import errno
import stat
from DIRAC import gLogger, S_OK, S_ERROR
from DIRAC.Resources.Storage.Utilities import checkArgumentFormat
from DIRAC.Resources.Storage.Storage... | vmendez/DIRAC | Resources/Storage/FileStorage.py | Python | gpl-3.0 | 19,287 | [
"DIRAC"
] | 1dabc9ff7bf23012ae173a2506572d237a691cd27f13f6586cd7129c19e44749 |
"""
====================================================================
Linear and Quadratic Discriminant Analysis with confidence ellipsoid
====================================================================
Plot the confidence ellipsoids of each class and decision boundary
"""
print(__doc__)
from scipy import lin... | mayblue9/scikit-learn | examples/classification/plot_lda_qda.py | Python | bsd-3-clause | 5,046 | [
"Gaussian"
] | cd4c255e33b774983540d997ec9aa52902141a3f92797c6279255a3f30658792 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
#
# Copyright (C) 2017 Lenovo, Inc.
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# ... | halberom/ansible | lib/ansible/modules/network/lenovo/cnos_vlag.py | Python | gpl-3.0 | 13,376 | [
"VisIt"
] | e3b66c516770fd5c2276b457847e850a185c95561871fa46a35a11ebf13bc249 |
#!/usr/bin/env python3
"""
Copyright 2021 Paul Willworth <ioscode@gmail.com>
This file is part of Galaxy Harvester.
Galaxy Harvester is free software: you can redistribute it and/or modify
it under the terms of the GNU Affero General Public License as published by
the Free Software Foundation, either version 3 ... | pwillworth/galaxyharvester | html/getSchematicEvents.py | Python | gpl-3.0 | 6,080 | [
"Galaxy"
] | b66370ea25f1a3571231fa3c0a24938ba3c92cc338911edd0839ddb2b6f0916c |
#opyright 2016 Google Inc. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or ag... | mpekalski/Y8M | bstnet/train.py | Python | apache-2.0 | 42,385 | [
"NEURON"
] | cdab08dabcfb2b2e8ee8de7b5a34bdbdf066c5c58135207f4bc2ad3dabaf59c7 |
from __future__ import print_function, division
# imports: internal
import copy
import glob
import os
import requests
import time
# imports: external
from astropy import units as u
from astropy.coordinates import SkyCoord
import astropy.constants as constants
from astropy.cosmology import Planck15, z_at_value
from as... | aburgasser/splat | splat/simulate.py | Python | mit | 110,951 | [
"Galaxy"
] | 5a5f8d9ed64c6b2c1749b921520ddbac9e7ff53fd46ad763bf4e2beac57db5dd |
#!/usr/bin/env python
import os
try:
__IPYTHON__
import sys
del sys.argv[1:]
except:
pass
import srwl_bl
import srwlib
import srwlpy
import srwl_uti_smp
def set_optics(v=None):
el = []
pp = []
names = ['S1', 'S1_HCM', 'HCM', 'HCM_DCM_C1', 'DCM_C1', 'DCM_C2', 'DCM_C2_HFM', 'HFM', 'After_H... | mrakitin/sirepo | tests/template/srw_generate_data/nsls-ii-hxn-beamline-ssa-closer.py | Python | apache-2.0 | 36,110 | [
"CRYSTAL",
"Gaussian"
] | 874153e5d2e9a2c8fb344910b065d7763dafbc56876194acab1d22bc50a64a1e |
#!/usr/bin/env python
# Copyright (c) 2015, Ecole Polytechnique Federale de Lausanne, Blue Brain Project
# All rights reserved.
#
# This file is part of NeuroM <https://github.com/BlueBrain/NeuroM>
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the fol... | wizmer/NeuroM | examples/end_to_end_distance.py | Python | bsd-3-clause | 4,397 | [
"NEURON"
] | cd8b824d4b6d778dd8605fb05c2be801e0d917048b414261a90477cf96fc4ce3 |
"""
Chainer trader agents implementation for cryptocurrency trading and trade simulation
author: Fernando H'.' Canteruccio, José Olímpio Mendes
date: 12/08/2017
"""
import numpy as np
np.random.seed(42)
from cached_property import cached_property
from datetime import timedelta
from time import time
import chainer
fr... | naripok/cryptotrader | cryptotrader/agents/cn_agents.py | Python | mit | 11,993 | [
"Gaussian"
] | 7cd241e54b2023065df374476f34d4e8cbdbc7fdde2ef81845a0a7af0567a17d |
"""
Module simplifying manipulation of XML described at
http://libvirt.org/formatdomain.html
"""
import logging
from autotest.client.shared import error
from virttest import xml_utils
from virttest.libvirt_xml import base, accessors, xcepts
from virttest.libvirt_xml.devices import librarian
class VMXMLDevices(list):... | rbian/virt-test | virttest/libvirt_xml/vm_xml.py | Python | gpl-2.0 | 78,414 | [
"VisIt"
] | b78048d6750d9a813c229a52739b397bf83a5bd0cc7b7b05d6fec95c0a881f52 |
# (c) 2016, Adrian Likins <alikins@redhat.com>
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later vers... | rmfitzpatrick/ansible | test/units/cli/test_galaxy.py | Python | gpl-3.0 | 19,299 | [
"Galaxy"
] | 192f7facae2deadf412855c366b3f68758e0fb800003809501394d143ad95193 |
# ----------------------------------------------------------------------
# Numenta Platform for Intelligent Computing (NuPIC)
# Copyright (C) 2013, Numenta, Inc. Unless you have an agreement
# with Numenta, Inc., for a separate license for this software code, the
# following terms and conditions apply:
#
# This progra... | 0x0all/nupic | py/nupic/image/__init__.py | Python | gpl-3.0 | 15,372 | [
"Gaussian"
] | 292b150eebbfefe155c9c9053dfa3060e4982db134938d315c5b180e8d024de5 |
import os
from packaging.version import Version
import numpy as np
import pandas as pd
from shapely.geometry import Point, Polygon, LineString, GeometryCollection, box
from fiona.errors import DriverError
import geopandas
from geopandas import GeoDataFrame, GeoSeries, overlay, read_file
from geopandas import _compat... | geopandas/geopandas | geopandas/tests/test_overlay.py | Python | bsd-3-clause | 26,222 | [
"Bowtie"
] | b9a95cacb09bae40ada7bb809e873371c59b9b23227ae9c783aac9ac911fc31b |
# analysis.py
#
# Copyright March 2016, Javier L. Vazquez <jlancha@die.upm.es>
#
# This file is part of SPECTRUM
# Cognitive SDR prototype using BladeRF and the GNU Radio framework.
#
#
# This is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by... | jLantxa/spectrum | sensor_deprecated/analysis.py | Python | gpl-3.0 | 7,730 | [
"Gaussian"
] | 9d5711c8c91e7b6b3d7c185fde20eb75103fe0e404dd9485d2ff1a085fe15fb8 |
# Copyright 2018 Amazon.com, Inc. or its affiliates. All Rights Reserved.
# SPDX-License-Identifier: Apache-2.0
from typing import Tuple
import numpy as np
from ...core import ContinuousParameter, InformationSourceParameter, ParameterSpace
from ...core.loop.user_function import MultiSourceFunctionWrapper
def multi_... | EmuKit/emukit | emukit/test_functions/multi_fidelity/borehole.py | Python | apache-2.0 | 2,997 | [
"Gaussian"
] | 352899856920b40c4cccd093f0fe3956961589c8bc804c58ec73c47d983b995d |
# -*- Mode:Python; indent-tabs-mode:nil; tab-width:4 -*-
#
# Copyright (C) 2019 Manas.Tech
# License granted by Canonical Limited
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License version 3 as
# published by the Free Software Foundation.
#
# ... | chipaca/snapcraft | snapcraft/plugins/v1/crystal.py | Python | gpl-3.0 | 4,466 | [
"CRYSTAL"
] | 2b963ae972dac43ef132c58143422467309ea0929c7028258ec6fb606aa3506d |
from setuptools import setup, find_packages
setup(
name='openchemistry-molecules',
version='0.1.0',
description='Molecular data, containers and RESTful API.',
packages=find_packages(),
install_requires=[
'girder>=3.0.0a5',
'girder-jobs',
'jsonpath-rw==1.4.0',
'avogadro==1.92... | OpenChemistry/mongochemserver | girder/molecules/setup.py | Python | bsd-3-clause | 622 | [
"Avogadro"
] | d2aa1c2b0c92dd196d9443dcbdf01dfd0530cc219f26b4e3359af15b7f02ddb7 |
"""
An example showing the norm and phase of an atomic orbital: isosurfaces of
the norm, with colors displaying the phase.
This example shows how you can apply a filter on one data set, and dislay
a second data set on the output of the filter. Here we use the contour
filter to extract isosurfaces of the norm of a com... | dmsurti/mayavi | examples/mayavi/mlab/atomic_orbital.py | Python | bsd-3-clause | 2,844 | [
"Mayavi"
] | 232343ca1243ca974c56eb888327110675505cc3306944caf6bcdc32e7881c54 |
import pickle
import numpy as np
import tensorflow as tf
import ruamel.yaml
from pkg_resources import resource_filename
import guerilla.data_handler as dh
class NeuralNet:
training_modes = ['adagrad', 'adadelta', 'gradient_descent']
#######################
### INITIALIZATIONS ###
#######################
d... | StephAO/guerilla | guerilla/play/neural_net.py | Python | mit | 32,562 | [
"Gaussian"
] | 030f205ea779e72ff686bf4313630aecab90d6757746c3f4929b63303cce04f4 |
""" :mod: GFAL2_StorageBase
.. module: python
:synopsis: GFAL2 class from StorageElement using gfal2. Other modules can inherit from this use the gfal2 methods.
:TODO: When we are totally migrated to python 3, we can explicitely remove the str cast
of all the ctx calls. They were added because we would receive un... | ic-hep/DIRAC | src/DIRAC/Resources/Storage/GFAL2_StorageBase.py | Python | gpl-3.0 | 74,055 | [
"DIRAC"
] | 35f1d303d74188641ed2415f5909813380a2124e29984522d1c6574efa2beccc |
"""test_moose_attribs.py:
"""
__author__ = "Dilawar Singh"
__copyright__ = "Copyright 2017-, Dilawar Singh"
__version__ = "1.0.0"
__maintainer__ = "Dilawar Singh"
__email__ = "dilawars@ncbs.res.in"
__status__ = "Development"
import sys
import os
import moose
print(moose.about())
attribs = [
"AdExIF",
"AdT... | BhallaLab/moose-core | tests/core/test_moose_attribs.py | Python | gpl-3.0 | 3,202 | [
"MOOSE",
"NEURON"
] | 6b8026c1a1945774bdd5335bde759aa2641d4db01c46796309f8a7b725b093eb |
from __future__ import absolute_import
from __future__ import print_function
import io
import os.path
import codecs
import sys
from .visitors import (formatters as formattervisitors,
flatteners as flattenervisitors,
solvers as solvervisitors,
import... | colossalbit/cssypy | cssypy/processors.py | Python | bsd-3-clause | 11,024 | [
"VisIt"
] | 430e712a523fe01e93f71269673494da5f10b039b76d470c8c5a52dcf8721cd0 |
# ----------------------------------------------------------------------------
# Copyright 2015 Nervana Systems Inc.
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.o... | nhynes/neon | tests/test_mergebroadcast_layer.py | Python | apache-2.0 | 10,292 | [
"Gaussian"
] | 587d4cca56a05cd789450da3a4ee59b98f05c25751faf8ac3dd79cd3341d80e4 |
__author__ = 'Charlie'
import tensorflow as tf
import os, sys
from six.moves import urllib
import tarfile
import time
from datetime import datetime
FLAGS = tf.app.flags.FLAGS
tf.app.flags.DEFINE_integer('batch_size', 128,
"""Number of images to process in a batch.""")
tf.app.flags.DEFINE_... | shekkizh/TensorflowProjects | Misc/Deblurring.py | Python | mit | 10,291 | [
"Gaussian"
] | ee613f0a84d59812778fb6faf14e3eadca1c7c6d1ec6dee44725bbaf88f8f4cc |
from module_base import ModuleBase
from module_mixins import NoConfigModuleMixin
import module_utils
import vtk
class testModule2(NoConfigModuleMixin, ModuleBase):
"""Resample volume according to 4x4 homogeneous transform.
"""
def __init__(self, module_manager):
# initialise our base class
... | nagyistoce/devide | modules/user/testModule2.py | Python | bsd-3-clause | 3,019 | [
"VTK"
] | c9c2e835a4e9364c942b9148ca509388aed7e1bbc68e455d16f2b18645db6e98 |
# encoding: utf-8
import datetime
from south.db import db
from south.v2 import SchemaMigration
from django.db import models
class Migration(SchemaMigration):
def forwards(self, orm):
# Adding field 'TaskStatus.first_seen'
db.add_column(u'profiles_taskstatus', 'first_seen', self.gf('django.db.mode... | 216software/Profiles | communityprofiles/profiles/oldmigrations/0075_auto__add_field_georecord_geo_id_segments__add_field_flatvalue_geograp.py | Python | mit | 23,758 | [
"MOE"
] | 10b22aef9eba65d2fefb58484c6cde1fc8e96e403f3fe6562f737b818fc11f69 |
#!/usr/bin/env python
"""This test ensures that the mapper does not change the LookupTable
that may be shared among different mappers. Specifically, the vtkMapper
and vtkScalarsToColorsPainter classes use the LookupTable to map scalars
to colors. When they do this they set the LookupTable's Alpha ivar.
They should d... | aashish24/VTK-old | Rendering/Core/Testing/Python/TestMapperLUT.py | Python | bsd-3-clause | 6,452 | [
"VTK"
] | f6582e4842559a13d339b0ebbaa08e617d11c37b99774be725fa6ea9adacca14 |
from distutils.core import setup
import sys
try:
import sqlalchemy
except:
print ''
print "** SQLAlchemy is recommended, and required for Juno\'s database access"
print '** Download from: http://sqlalchemy.org/download.html'
print '** Or run: `easy_install SQLAlchemy`'
print '** If you\'re not ... | breily/juno | setup.py | Python | mit | 2,451 | [
"Brian"
] | 57e4aaba00d481973140d94375dde7f7f753528fbef7d5c2b278739abcc27868 |
from setuptools import setup
setup(
name='Wicken',
version='0.2.0',
description='Maps metadata concepts to concrete specifications and file formats',
author='David Stuebe',
author_email='DStuebe@ASAScience.com',
url='https://github.com/ioos/wicken',
classifiers=[
'Development Status... | ioos/wicken | setup.py | Python | apache-2.0 | 916 | [
"NetCDF"
] | 225a1d53b6cee40fdcee8612ebe3cc98cdb005e826246558bfff86106774e100 |
# -*- coding: utf-8 -*-
# HORTON: Helpful Open-source Research TOol for N-fermion systems.
# Copyright (C) 2011-2015 The HORTON Development Team
#
# This file is part of HORTON.
#
# HORTON is free software; you can redistribute it and/or
# modify it under the terms of the GNU General Public License
# as published by th... | eustislab/horton | horton/constants.py | Python | gpl-3.0 | 1,498 | [
"Avogadro"
] | 5745e5d8d01b5be4b5a5637cca169bca7e109a439ab02ac8c308dcd3824307ba |
#!/usr/bin/python
#
# @author: Gaurav Rastogi (grastogi@avinetworks.com)
# Eric Anderson (eanderson@avinetworks.com)
# module_check: supported
# Avi Version: 17.1.1
#
# Copyright: (c) 2017 Gaurav Rastogi, <grastogi@avinetworks.com>
# GNU General Public License v3.0+ (see COPYING or https://www.gnu.org/licenses... | hkariti/ansible | lib/ansible/modules/network/avi/avi_applicationprofile.py | Python | gpl-3.0 | 6,742 | [
"VisIt"
] | cbd36c0774dc5cb9cb9b937839b732b30b80189b22e314366cd40d7742878097 |
# ----------------------------------------------------------------------------
# Copyright (c) 2013--, scikit-bio development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file COPYING.txt, distributed with this software.
# --------------------------------------------... | jensreeder/scikit-bio | skbio/diversity/beta/tests/test_base.py | Python | bsd-3-clause | 7,119 | [
"scikit-bio"
] | 60e3242dd59e0c48150a38262465adf929ec51ce9ba4422802858be3ffe24465 |
# Python imports
import locale
# Engine imports
from myrmidon.myrmidon import MyrmidonProcess, MyrmidonGame, MyrmidonError
from myrmidon.consts import *
from pygame.locals import *
# OpenGL imports
from OpenGL.GL import *
# game imports
from consts import *
from helpers import *
from gui_elements imp... | Fiona/AreWeAlone | gui.py | Python | mit | 30,759 | [
"Galaxy"
] | 3f75ed4b3c327e3facac493c940b1767ed033ff72149ad5ed670f478723d00d7 |
#!/usr/bin/env python
import vtk
from vtk.test import Testing
from vtk.util.misc import vtkGetDataRoot
VTK_DATA_ROOT = vtkGetDataRoot()
# Create the RenderWindow and Renderer
ren1 = vtk.vtkRenderer()
renWin = vtk.vtkRenderWindow()
renWin.AddRenderer(ren1)
renWin.SetAlphaBitPlanes(1)
iren = vtk.vtkRenderWind... | hlzz/dotfiles | graphics/VTK-7.0.0/Rendering/Core/Testing/Python/TestWindowToImageTransparency.py | Python | bsd-3-clause | 1,973 | [
"VTK"
] | 39b3971292b47cc1192343e121590f704282309a7b9ea606983a0aa964cf1f8e |
#!/usr/bin/env python -i
# preceding line should have path for Python on your machine
# matplotlib_plot.py
# Purpose: plot Temp of running LAMMPS simulation via matplotlib
# Syntax: plot.py in.lammps Nfreq Nsteps compute-ID
# in.lammps = LAMMPS input script
# Nfreq = plot data point every this many ... | akohlmey/lammps | python/examples/matplotlib_plot.py | Python | gpl-2.0 | 2,234 | [
"LAMMPS"
] | 3e31016ff716a5828a062723f2e68b9b74c8b0d3428c864fd308102f19b9adac |
# import_export_google_civic/views.py
# Brought to you by We Vote. Be good.
# -*- coding: UTF-8 -*-
from django.shortcuts import redirect, render
from import_export_google_civic.controllers import import_voterinfo_from_json
def import_voterinfo_from_json_view(request):
"""
Take data from google civic informa... | wevoteeducation/WeVoteBase | import_export_google_civic/views.py | Python | mit | 980 | [
"VisIt"
] | 4d1dfd17caecdfb19b9ff0980902b5830e07c6b57c10bee10cd76f4eb2a290fe |
# Copyright 2017 Google Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, ... | datacommonsorg/api-python | datacommons/utils.py | Python | apache-2.0 | 4,862 | [
"VisIt"
] | 9eb25887361249557d249522f1e13c960d7c83015883b250242a9e8f371d2d56 |
# Copyright (C) Nial Peters 2015
#
# This file is part of gns_flyspec.
#
# gns_flyspec is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
... | yannikbehr/spectroscopy | src/spectroscopy/flux/scans.py | Python | gpl-3.0 | 18,988 | [
"Gaussian"
] | 3425df80e196465f405a43a361eaa56e3f9748fd00844e8ea144692bd70cf858 |
import os
import re as regex
from nipype.interfaces.base import(
TraitedSpec,
CommandLineInputSpec,
CommandLine,
File,
traits,
isdefined,
)
class BseInputSpec(CommandLineInputSpec):
inputMRIFile = File(mandatory=True, argstr='-i %s',
desc='input MRI volume')
o... | FCP-INDI/nipype | nipype/interfaces/brainsuite/brainsuite.py | Python | bsd-3-clause | 36,143 | [
"ADF"
] | 9404a01221446da96723315f16fe1c89951460cc26eeaa0bc53947a79dbbc937 |
import os
os.environ.setdefault('DJANGO_SETTINGS_MODULE', 'growthstreet.settings')
import sqlite3
import django
django.setup()
from django.contrib.auth.models import User
#from django.contrib.sites.models import Site
from growthstreet.models import UserDetails,LoanRequest
users = User.objects.all()
details = UserDet... | NamanJn/django-tech-test | ennot.py | Python | bsd-3-clause | 691 | [
"ADF"
] | 14f9b6de6e2c1387faabffc30ad8a14e60e39b1545fc55bba9e7643fe424fed6 |
'''
Created on Aug 28, 2014
@author: David Zwicker <dzwicker@seas.harvard.edu>
Holds classes useful for describing and fitting the ground profile
'''
from __future__ import division
import itertools
import numpy as np
from scipy import ndimage
from shapely import geometry
from utils.data_structures.cache import c... | david-zwicker/cv-mouse-burrows | mouse_burrows/algorithm/objects/ground.py | Python | bsd-3-clause | 10,474 | [
"Gaussian"
] | 723c0339d6138f5f43f8e24cb15a465eb5837b6258090506f72a433e21feb595 |
#!/usr/bin/env python3
#
# santi_pipeline.py
#
# Code for script to identify OTUs from metabarcoding reads.
#
# This is an almost direct translation of a pipeline written by Santiago
# Garcia (Forest Research), to generate OTU clusters from metabarcoding ITS
# reads in Phytophthora.
#
# (c) The James Hutton Institute 2... | widdowquinn/THAPBI-pycits | pycits/scripts/santi_pipeline.py | Python | mit | 15,721 | [
"BLAST"
] | 542b48371f8d2b2626dd71172684f9b8675a293cbb9d375a5165d239931d2884 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
#
# @Author: Brian Cherinka, José Sánchez-Gallego, and Brett Andrews
# @Date: 2018-07-20
# @Filename: test_quantities.py
# @License: BSD 3-clause (http://www.opensource.org/licenses/BSD-3-Clause)
#
# @Last modified by: andrews
# @Last modified time: 2018-10-19 14:10:15
... | sdss/marvin | tests/tools/test_quantities.py | Python | bsd-3-clause | 10,522 | [
"Brian"
] | 1f0c5d95d317e364a9e7536afdb88a2a13aeaebd9f447aa4fccf3a200fc7fd7c |
# Copyright (C) 2013 Paul Weaver <p.weaver@ruthorn.co.uk>
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This pro... | ch3pjw/junction | test/test_formatting_api.py | Python | gpl-3.0 | 20,094 | [
"exciting"
] | 9c54dd4f96d8e9af401e248f2986e3af6b680eab70b9661527ea8e17c7c364f1 |
import numpy as np
from sklearn import svm, datasets
import matplotlib.pyplot as plt
from sklearn.cross_validation import train_test_split
#from sklearn.metrics import classification_report
from sklearn.metrics import accuracy_score
from sklearn.metrics import roc_curve, auc
def compute_J(N, theta):
if N == 0:
re... | akhilpm/Masters-Project | arc_cosine/test.py | Python | mit | 3,207 | [
"Gaussian"
] | 07fa84c1949b53121fc86082236a1caebdec88e714eefc365f755efe53cd6822 |
#!/usr/bin/python
#
# @author: Gaurav Rastogi (grastogi@avinetworks.com)
# Eric Anderson (eanderson@avinetworks.com)
# module_check: supported
#
# Copyright: (c) 2017 Gaurav Rastogi, <grastogi@avinetworks.com>
# GNU General Public License v3.0+ (see COPYING or https://www.gnu.org/licenses/gpl-3.0.txt)
#
ANSIB... | thaim/ansible | lib/ansible/modules/network/avi/avi_errorpageprofile.py | Python | mit | 4,621 | [
"VisIt"
] | ce9cfcf71a706b83416bfe4fa879b7aec44cf148fc1723f4138e5036b7b90a35 |
# This module contains interfaces to external visualization programs
# and a visualization base class
#
# Written by Konrad Hinsen
# last revision: 2001-1-3
#
"""This module provides visualization of chemical objects and animated
visualization of normal modes and sequences of configurations, including
trajectories. Vi... | fxia22/ASM_xf | PythonD/site_python/MMTK/Visualization.py | Python | gpl-2.0 | 15,016 | [
"VMD"
] | 550d19025030ab0eaee018acd608100911659fd32cea91d40b09ecdef7c9a5b4 |
#!/usr/bin/env python3
from twython import Twython
import pickle
import consts
def adduser():
tw = Twython(
consts.keys['API_KEY'],
consts.keys['API_SECRET'],
)
auth = tw.get_authentication_tokens()
tw = Twython(
consts.keys['API_KEY'],
consts.keys['API_SECRET'],
... | lesguillemets/termeet.py | termeet/adduser.py | Python | mit | 1,405 | [
"VisIt"
] | 71c972e9d4c28356ce035a992ae216212eacf317b3725c9048acf303a2f8e06c |
#!/usr/bin/env python
"""
list FileCatalog file or directory
"""
import os
import getopt
from COMDIRAC.Interfaces import DSession
from COMDIRAC.Interfaces import createCatalog
from COMDIRAC.Interfaces import pathFromArguments
if __name__ == "__main__":
import sys
from DIRAC.Core.Base import Script
class Para... | calancha/COMDIRAC | Interfaces/scripts/dls.py | Python | gpl-3.0 | 13,037 | [
"DIRAC"
] | 7aa6bc8e70c8070e0622228fa41c41ce6e2187ce21a27992c902b53b2c1ef55f |
# (C) British Crown Copyright 2014 - 2015, Met Office
#
# This file is part of Iris.
#
# Iris is free software: you can redistribute it and/or modify it under
# the terms of the GNU Lesser General Public License as published by the
# Free Software Foundation, either version 3 of the License, or
# (at your option) any l... | decvalts/iris | lib/iris/tests/integration/test_grib2.py | Python | gpl-3.0 | 12,080 | [
"Gaussian",
"NetCDF"
] | d626d6ffee980352e4225a1d600d1fa33504f4473102d1390a3c9c8e71973254 |
"""The lattice module define the class to handle 3D crystal lattices (the 14 Bravais lattices).
"""
import os
from pymicro.external import CifFile_module as CifFile
import enum
import functools
import math
import numpy as np
from numpy import pi, dot, transpose, radians
from matplotlib import pyplot as plt
class Crys... | heprom/pymicro | pymicro/crystal/lattice.py | Python | mit | 84,101 | [
"CRYSTAL",
"VTK",
"pymatgen"
] | 993d7ef0f84554e03eb99e09ea9b96329ce48f17a59bc7cb43d074a1d2c0c7a5 |
"""openmoltools: Tools for Small Molecules, Antechamber, OpenMM, and More.
"""
from __future__ import print_function
DOCLINES = __doc__.split("\n")
import os
import sys
import shutil
import tempfile
import subprocess
from distutils.ccompiler import new_compiler
from setuptools import setup, Extension
import numpy
tr... | juliebehr/gaff2xml | setup.py | Python | gpl-2.0 | 1,899 | [
"OpenMM"
] | 995af86156fa2bbcffa6a6d469a4ddd790ec8e1accaced14704e246f845c4ee9 |
""" DIRAC FileCatalog base class for mix-in classes to manage users and groups
"""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
__RCSID__ = "$Id$"
import time
import threading
from DIRAC import S_OK, S_ERROR, gConfig, gLogger
from DIRAC.Core.Security im... | yujikato/DIRAC | src/DIRAC/DataManagementSystem/DB/FileCatalogComponents/UserGroupManager/UserAndGroupManagerBase.py | Python | gpl-3.0 | 1,032 | [
"DIRAC"
] | b8d6891adb0528e3c54dbf29e4c5840bd2bcd343b6837ac0b9901a289dbea91d |
# -*- coding: utf-8 -*-
#
# Copyright (C) Pootle contributors.
#
# This file is a part of the Pootle project. It is distributed under the GPL3
# or later license. See the LICENSE file for a copy of the license and the
# AUTHORS file for copyright and authorship information.
from collections import OrderedDict
from dj... | ta2-1/pootle | pootle/apps/pootle_language/models.py | Python | gpl-3.0 | 5,908 | [
"VisIt"
] | 51dc20ef74b8423f2b75e795f85a1161c5ee76cc626275141498873f0d008461 |
#!/usr/bin/env python
########################################################################
# File : dirac-agent
# Author : Adria Casajus, Andrei Tsaregorodtsev, Stuart Paterson
########################################################################
"""
This is a script to launch DIRAC agents. Mostly internal.
""... | ic-hep/DIRAC | src/DIRAC/Core/scripts/dirac_agent.py | Python | gpl-3.0 | 1,675 | [
"DIRAC"
] | 64c3ac7c37507f947233b5bb464507aaa74706ccc01d5bfd6788769a40ff7371 |
#* This file is part of the MOOSE framework
#* https://www.mooseframework.org
#*
#* All rights reserved, see COPYRIGHT for full restrictions
#* https://github.com/idaholab/moose/blob/master/COPYRIGHT
#*
#* Licensed under LGPL 2.1, please see LICENSE for details
#* https://www.gnu.org/licenses/lgpl-2.1.html
"""
Creates... | harterj/moose | test/tests/mesh/stitched_mesh/stitched_mesh.py | Python | lgpl-2.1 | 2,075 | [
"MOOSE",
"VTK"
] | 1a6f06ba61bd5d4a037eadac8127155d3d9484fc7672cf1dee1be8a5a5c5f217 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
################################################################################
#
# RMG - Reaction Mechanism Generator
#
# Copyright (c) 2002-2010 Prof. William H. Green (whgreen@mit.edu) and the
# RMG Team (rmg_dev@mit.edu)
#
# Permission is hereby granted, free of c... | pierrelb/RMG-Py | rmgpy/data/base.py | Python | mit | 56,494 | [
"RDKit"
] | 46e1170f0c5724d96d4381e96502b0d4d9c10959ada610afb740878ba4099e68 |
#!/usr/bin/env python
# Copyright 2007, Michael J. Harms
# This program is distributed under General Public License v. 3. See the file
# COPYING for a copy of the license.
__description__ = \
"""
pdb_mutator.py
Mutates a residue in a pdb file.
"""
__author__ = "Michael J. Harms"
__date__ = "070729"
__description... | bryan-lunt/pdb_tools | pdb_mutator.py | Python | gpl-3.0 | 5,997 | [
"CHARMM"
] | e43b1641baefc178a5425999d379980afc2d5e81282aa623138fd1c99e9c3d44 |
# -*- coding: utf-8 -*-
# vim: autoindent shiftwidth=4 expandtab textwidth=120 tabstop=4 softtabstop=4
###############################################################################
# OpenLP - Open Source Lyrics Projection #
# ------------------------------------------------------... | marmyshev/item_title | openlp/plugins/songs/lib/__init__.py | Python | gpl-2.0 | 24,660 | [
"Brian"
] | 24939cb12f70b7a43a7a64ed0c4a961b8c80477e208c95a3721187c431b28362 |
import moose
import rdesigneur as rd
rdes = rd.rdesigneur()
rdes.buildModel()
moose.showfields( rdes.soma )
| BhallaLab/moose-examples | tutorials/Rdesigneur/ex1_minimalModel.py | Python | gpl-2.0 | 108 | [
"MOOSE"
] | 2ae5e439410200957a83499ca4d5ec02d964d6f2caa497d1fd44a7ab6ec72533 |
import ectl
from ectl import rundeck
import collections
import re
import sys
import os
import string
import tempfile
import filecmp
import shutil
from ectl import pathutil, launchers
from giss import ioutil
import copy
import subprocess
import signal
import time
import netCDF4
# TODO: Be careful not to leave around z... | citibeth/modele-control | lib/ectl/rundir.py | Python | lgpl-2.1 | 9,666 | [
"NetCDF"
] | 65b3eee43c22b4387b5719df001e5e3481ed031756a9b767250d56e4e445b393 |
#!/usr/bin/env python
# Copyright 2014-2019 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | gkc1000/pyscf | pyscf/symm/test/test_Dmatrix.py | Python | apache-2.0 | 3,899 | [
"PySCF"
] | bdb2b1f59f8550abcb09ed85fd2e7ff920cfebe77f986427cce3c7ff5698c7eb |
# Copyright (c) 2012, Cloudscaling
# All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License"); you may
# not use this file except in compliance with the License. You may obtain
# a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable... | raildo/nova | nova/hacking/checks.py | Python | apache-2.0 | 21,089 | [
"VisIt"
] | 3faf0fb8c8c61d4756e8db1d135daa43f4517b3f7e2f093cd6008f90378b1f5a |
"""
========================================
Special functions (:mod:`scipy.special`)
========================================
.. module:: scipy.special
Nearly all of the functions below are universal functions and follow
broadcasting and automatic array-looping rules. Exceptions are
noted.
.. seealso::
`scipy.s... | mbayon/TFG-MachineLearning | venv/lib/python3.6/site-packages/scipy/special/__init__.py | Python | mit | 27,521 | [
"Gaussian"
] | e4e6e67200f1cad0347a5e67dec76da31a859dc18be9e2ca994ed78daa0f1e48 |
from pymol.cgo import *
cgo = [
BEGIN, LINES,
COLOR, 1,1,1,
VERTEX, 0,0,0,
COLOR, 0,0,1,
VERTEX, 0,0,1,
COLOR, 1,1,1,
VERTEX, 0,0,0,
COLOR, 0,1,0,
VERTEX, 0,1,0,
COLOR, 1,1,1,
VERTEX, 0,0,0,
COLOR, 1,0,0,
VERTEX, 1,0,0,
END,
# nitrogen
COLOR, 0.25, 0.25, 1.00,... | gratefulfrog/lib | python/pymol/pymol_path/examples/devel/cgo04.py | Python | gpl-2.0 | 4,128 | [
"PyMOL"
] | 4523dbc64fb9846269026f27deb464c1bd0653497f37def7dd2ba79f7f160a8c |
"""Tests for module da on Domain Adaptation """
# Author: Remi Flamary <remi.flamary@unice.fr>
#
# License: MIT License
import numpy as np
from numpy.testing.utils import assert_allclose, assert_equal
import ot
from ot.datasets import get_data_classif
from ot.utils import unif
def test_sinkhorn_lpl1_transport_clas... | aje/POT | test/test_da.py | Python | mit | 17,045 | [
"Gaussian"
] | 11b733d01e8bbe1df64e9f504b21f1c6259c3f457da098c0beaa654e77d98598 |
import abc
import copy
import logging
import itertools
import os
import uuid
import sys
import time
import datetime
import signal
import subprocess
import re
import multiprocessing
import signal
from yapsy.PluginManager import PluginManager
from yapsy.IPluginLocator import IPluginLocator
from threading import Thread... | cbun/assembly | lib/assembly/plugins.py | Python | mit | 25,066 | [
"BWA"
] | e28d114707957cc95081f67d93c80e581c4a7be30fb704a3aaee261c3b71bbbd |
from __future__ import print_function
from __future__ import absolute_import
from .DataTestTemplate import _DataTest
from PyOpenWorm.muscle import Muscle
from PyOpenWorm.neuron import Neuron
class MuscleTest(_DataTest):
ctx_classes = (Muscle, Neuron)
def test_muscle(self):
self.assertTrue(isinstanc... | gsarma/PyOpenWorm | tests/MuscleTest.py | Python | mit | 938 | [
"NEURON"
] | 66fce04987711db3b785fdf7d48f85759012e8d1793014d9a4a1bc90085ba3f0 |
def get_dfs(adj_list):
'''
return DFS for given adjacency list
'''
parent = {}
def walk_node(u):
'''
Recursivly visit each node
'''
# iterate through the adjacency list of the node
for v in adj_list[u]:
# Check if node is not visited
i... | arunghosh/python-graph-search | dfs.py | Python | mit | 804 | [
"VisIt"
] | 975810a660e3eda0f79e97a3830788721cada231af15a2626e77f331531337e0 |
from topo.pattern.basic import Gabor, SineGrating, Gaussian
import __main__
import numpy
import pylab
import matplotlib
from numpy import array, size, mat, shape, ones, arange
from topo import numbergen
#from topo.base.functionfamily import IdentityTF
from topo.transferfn.misc import PatternCombine
from topo.transferfn... | jesuscript/topo-mpi | contrib/modelfit.py | Python | bsd-3-clause | 198,416 | [
"Gaussian"
] | 85436b305f31a0712a19f74820e97d110db5c2d84e28338599cfdf24486f4946 |
# Copyright (C) 2007 Google Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writ... | bileto/transitfeed | tests/transitfeed/testschedule.py | Python | apache-2.0 | 39,512 | [
"CASINO"
] | 7ac08a935f15064f8211a10a1b56521f30579f00785307e9f72fd7556fff4967 |
# -*- coding: utf-8 -*-
import pytest
from skosprovider.uri import UriPatternGenerator
from skosprovider_sqlalchemy.models import Initialiser
from skosprovider_sqlalchemy.providers import (
SQLAlchemyProvider
)
from tests import DBTestCase
from tests.conftest import create_data, create_visitation
from skosprovide... | cahytinne/skosprovider_sqlalchemy | tests/test_providers.py | Python | mit | 13,796 | [
"VisIt"
] | 1b4a1e4de616c349361d9b8c90e9bd95f087b75c36537bd58af84433b8422675 |
"""
LLVM pass that converts intrinsic into other math calls
"""
from __future__ import print_function, absolute_import
from llvmlite import ir
class _DivmodFixer(ir.Visitor):
def visit_Instruction(self, instr):
if instr.type == ir.IntType(64):
if instr.opname in ['srem', 'urem', 'sdiv', 'udiv... | jriehl/numba | numba/targets/intrinsics.py | Python | bsd-2-clause | 2,075 | [
"VisIt"
] | 858750a3d86c782212eaaff18b7a0901dbd30bb4e44e0e977ebada366c412cd3 |
"""
bct slope v0.01
- implements an alternative market classification algo
Bitcoin Trade Simulator
Copyright 2011 Brian Monkaba
This file is part of ga-bitbot.
ga-bitbot is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Fre... | Pascal66/ga-bitbot | bct_slope.py | Python | gpl-3.0 | 39,220 | [
"Brian"
] | a2de5ca6562d226f84920ed08ad076bff5e5d100b352d4a6bb27f2172ed77e11 |
from unittest import skipUnless
from bok_choy.promise import EmptyPromise
from bok_choy.web_app_test import WebAppTest
from acceptance_tests.config import ENABLE_SSO_TESTS, MARKETING_URL_ROOT, LMS_URL_ROOT
from acceptance_tests.mixins import LogistrationMixin, OttoAuthenticationMixin, LMSLogoutMixin
from acceptance_t... | mferenca/HMS-ecommerce | acceptance_tests/test_auth.py | Python | agpl-3.0 | 2,605 | [
"VisIt"
] | 40691757a92fb2b25a996a0590056d67d4c22e5429687b114873ddaaf75387a4 |
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2000-2006 Donald N. Allingham
# Copyright (C) 2007-2009 Brian G. Matherly
# Copyright (C) 2009 Gary Burton
# Copyright (C) 2010 Peter Landgren
# Copyright (C) 2011 Adam Stein <adam@csh.rit.edu>
# Copyright (C) 2017 Paul Frankl... | SNoiraud/gramps | gramps/plugins/docgen/rtfdoc.py | Python | gpl-2.0 | 22,731 | [
"Brian"
] | b168d4028808313affe34c4afc04c940d5cdeab5996051da88e4f7cff19c914f |
# -*- coding: utf-8 -*-
# Copyright: (c) 2019, Ansible Project
# GNU General Public License v3.0+ (see COPYING or https://www.gnu.org/licenses/gpl-3.0.txt)
# Make coding more python3-ish
from __future__ import (absolute_import, division, print_function)
__metaclass__ = type
import json
import os
import pytest
import ... | roadmapper/ansible | test/units/galaxy/test_collection.py | Python | gpl-3.0 | 52,350 | [
"Galaxy"
] | e44fe530cec1fe4e75a5d64250d769610eabf5da23dd1a373725c2d6916ff608 |
import os
import logging
import gzip
import pysam
import numpy as np
from collections import defaultdict, namedtuple
from .utils import read_tbi, reg2bins
CaddRecord = namedtuple('CaddRecord', 'chrom pos stop ref alt raw phred')
class CaddFilter(object):
'''
An object that filters/annotates VCF records u... | gantzgraf/vape | vase/cadd_filter.py | Python | gpl-3.0 | 14,536 | [
"pysam"
] | 667e50e27221132e0c7ae05dc581c054fcacc95488442cf4996f453faf63911d |
#######################################################
# Copyright (c) 2015, ArrayFire
# All rights reserved.
#
# This file is distributed under 3-clause BSD license.
# The complete license agreement can be obtained at:
# http://arrayfire.com/licenses/BSD-3-Clause
######################################################... | arrayfire/arrayfire_python | arrayfire/image.py | Python | bsd-3-clause | 40,535 | [
"Gaussian"
] | a5d911ef65dcda715e679ea36519ec83162784bcf8ec2bb2d46c1287cbc1f121 |
# -*- coding: utf-8 -*-
"""
molvs.resonance
~~~~~~~~~~~~~~~
Resonance (mesomeric) transformations.
:copyright: Copyright 2016 by Matt Swain.
:license: MIT, see LICENSE file for more details.
"""
import logging
from rdkit import Chem
log = logging.getLogger(__name__)
MAX_STRUCTURES = 1000
class ResonanceEnumer... | ptosco/rdkit | rdkit/Chem/MolStandardize/resonance.py | Python | bsd-3-clause | 3,753 | [
"RDKit"
] | 3518c3d0e733afbc2240616693a564357717c8b2306c6679609239296bca5a8b |
import unittest
import doctest
import os
import commands
from StringIO import StringIO
import cyvcf
from cyvcf import utils
suite = doctest.DocTestSuite(cyvcf.parser)
def fh(fname):
return file(os.path.join(os.path.dirname(__file__), fname))
class TestVcfSpecs(unittest.TestCase):
def test_vcf_4_0(self):
... | arq5x/cyvcf | test/test_vcf.py | Python | mit | 25,676 | [
"pysam"
] | bb45bbbe43b4b8d98271d0425cb2e0d3da05eeef37e3ba6951e186a24a65694e |
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