text stringlengths 12 1.05M | repo_name stringlengths 5 86 | path stringlengths 4 191 | language stringclasses 1
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class Solution(object):
def updateMatrix(self, matrix):
"""
:type matrix: List[List[int]]
:rtype: List[List[int]]
"""
m, n = len(matrix), len(matrix[0])
visit = [[0] * n for i in xrange(m)]
dist = [[0] * n for i in xrange(m)]
queue = collections.deque(... | zqfan/leetcode | algorithms/542. 01 Matrix/solution.py | Python | gpl-3.0 | 909 | [
"VisIt"
] | bb102a4de660e61963c7e77f51c3c63f6333f1c48b9afbf845781921fb281259 |
#!/usr/bin/env python3
# Copyright (c) 2018 TurboCoin
# Distributed under the MIT software license, see the accompanying
# file COPYING or http://www.opensource.org/licenses/mit-license.php.
"""Verify commits against a trusted keys list."""
import argparse
import hashlib
import logging
import os
import subprocess
impor... | Phonemetra/TurboCoin | contrib/verify-commits/verify-commits.py | Python | mit | 8,147 | [
"Octopus"
] | a6e5429a8bb8bfdbdcd6267de1c0110a8b64d099d6fb9439630fb14e21f310d2 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
File : BtLog.py
Author : Dominik R. Laetsch, dominik.laetsch at gmail dot com
"""
from __future__ import division
import sys
def error(message, *argv):
if argv is None:
sys.exit(error_d[message])
else:
sys.exit(error_d[message] % (... | DRL/blobtools | lib/BtLog.py | Python | gpl-3.0 | 6,347 | [
"BLAST"
] | 2af2ed0db23e3c6940a275a40e7146f94d781dff6f6b3fe7b0220af08c67d4b4 |
import PySide.QtGui as QtGui
import PySide.QtCore as QtCore
import GravitionalObject as go
class Firefly(go.GravitationalObject):
def __init__(self):
super(Firefly, self).__init__()
self._acc = QtCore.QPointF()
self._vel = QtCore.QPointF()
self._pos = QtCore.QPointF()
... | iglennrogers/swarm_pyside | Firefly.py | Python | bsd-2-clause | 2,116 | [
"Firefly"
] | f90d531bd914d18bf3dba481311461c973e60451f6e5b454625e52fbb3f9a32a |
import urllib
import galaxy.model
from galaxy.model.orm import *
from base.twilltestcase import *
class TestHistory( TwillTestCase ):
def test_000_history_options_when_not_logged_in( self ):
"""Testing history options when not logged in"""
self.logout()
check_str = 'logged in</a> to store ... | dbcls/dbcls-galaxy | test/functional/test_history_functions.py | Python | mit | 30,269 | [
"Galaxy"
] | 09b3659b694b24e0e05f76c47f0eb4fd7912eacefb7e6a62ee202fa053c9e801 |
from dateutil.relativedelta import relativedelta
from django.utils import timezone
from edc_constants.constants import FAILED_ELIGIBILITY, OFF_STUDY, SCHEDULED, POS, YES, NO, NEG, NOT_APPLICABLE, UNK
from edc_meta_data.models import RequisitionMetaData
from edc_appointment.models import Appointment
from td_maternal.mo... | TshepangRas/tshilo-dikotla | td_maternal/tests/test_maternal_status_helper.py | Python | gpl-2.0 | 11,983 | [
"VisIt"
] | e01ea28b0451843a8f060f0edc3bbb83838fc44b8c999e9d62bd2987d2c7a5f4 |
""" RPCClient object is used to create RPC connection to services
"""
__RCSID__ = "$Id$"
from DIRAC.Core.DISET.private.InnerRPCClient import InnerRPCClient
class _MagicMethod( object ):
""" This object allows to bundle together a function calling
an RPC and the remote function name.
When this object i... | andresailer/DIRAC | Core/DISET/RPCClient.py | Python | gpl-3.0 | 3,749 | [
"DIRAC"
] | 98b3fd69d322ac49752e6029d0b9820472f3a1955d124f99dbcfaa6e3e6af912 |
# -*- coding: utf-8 -*-
#
# test_connect_array_fixed_outdegree.py
#
# This file is part of NEST.
#
# Copyright (C) 2004 The NEST Initiative
#
# NEST is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either versi... | sanjayankur31/nest-simulator | testsuite/pytests/test_connect_array_fixed_outdegree.py | Python | gpl-2.0 | 3,365 | [
"NEURON"
] | a147b0d857b5829a84430b7f94cc7f659aa24a6eebb7963a908cd661fd284fc2 |
#!/usr/bin/env python3
#* This file is part of the MOOSE framework
#* https://www.mooseframework.org
#*
#* All rights reserved, see COPYRIGHT for full restrictions
#* https://github.com/idaholab/moose/blob/master/COPYRIGHT
#*
#* Licensed under LGPL 2.1, please see LICENSE for details
#* https://www.gnu.org/licenses/lgp... | nuclear-wizard/moose | python/peacock/tests/utils/test_StoreLoadWidgetState.py | Python | lgpl-2.1 | 3,015 | [
"MOOSE"
] | 5cf335de8666f49e51bcf831d2790f5953ebff1c9eb5a722bd1a376abd1043e0 |
#!/usr/bin/env python
# Copyright 2014-2018 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | gkc1000/pyscf | pyscf/dmrgscf/nevpt_mpi.py | Python | apache-2.0 | 19,113 | [
"PySCF"
] | 6fb4dd95b37450a28438967df2442cb0d4ad16ac302d380c054e77ccad5996c0 |
#!/usr/bin/python
#
# @author: Gaurav Rastogi (grastogi@avinetworks.com)
# Eric Anderson (eanderson@avinetworks.com)
# module_check: supported
# Avi Version: 17.1.1
#
# Copyright: (c) 2017 Gaurav Rastogi, <grastogi@avinetworks.com>
# GNU General Public License v3.0+ (see COPYING or https://www.gnu.org/licenses... | thaim/ansible | lib/ansible/modules/network/avi/avi_vsdatascriptset.py | Python | mit | 5,112 | [
"VisIt"
] | da2771634ccdf244dd7a20914cabc9351935c008b3b10a795a7b4f39a817ad96 |
import logging
import os.path
import random
import tempfile
import time
from datetime import datetime
from django.conf import settings
from selenium import webdriver
from selenium.common.exceptions import NoSuchElementException, NoSuchWindowException, StaleElementReferenceException
from selenium.webdriver.common.actio... | django-functest/django-functest | django_functest/funcselenium.py | Python | bsd-3-clause | 27,455 | [
"VisIt"
] | 25bd70f6bc2ddff7c49c2ac1d06babcab8a919ec5a80dd4692c552ae63368df0 |
from os import listdir, system
import shutil, os
from sys import argv
from Bio import SeqIO
from Bio.Seq import Seq
from Bio.SeqRecord import SeqRecord
import pysam
from tqdm import *
from collections import Counter
#[set working directory]
os.chdir('..')
#[read position files]
def read_position(position_directory... | bvalot/panISa | script/3_extract_seq.py | Python | gpl-3.0 | 6,190 | [
"pysam"
] | 7ba1148d93db15c92cfaa4e55376772a591d7f085279238595ad10abb78b322a |
# MDPOW: solvation.py
# 2021 Alia Lescoulie
from typing import List
import numpy as np
import pandas as pd
import MDAnalysis as mda
from MDAnalysis.lib.distances import capped_distance
from .ensemble import EnsembleAnalysis, Ensemble, EnsembleAtomGroup
import logging
logger = logging.getLogger('mdpow.dihedral')
... | Becksteinlab/MDPOW | mdpow/analysis/solvation.py | Python | gpl-3.0 | 2,732 | [
"MDAnalysis"
] | 52b10f6ef16dceac41fee30c350be34dde094d1c94172250cb571f83a8f8f759 |
#!/usr/bin/env python
# -*- coding=utf-8 -*-
"""
Example of DOS modulation
Apply moduleDOS module
"""
from __future__ import division, print_function
import moduleDOS
from pymatgen.io.vaspio.vasp_output import Vasprun
__author__ = "Germain Salvato-Vallverdu"
__email__ = "germain.vallverdu@univ-pau.fr"
__licence__ =... | gVallverdu/myScripts | VASP/scofield.py | Python | gpl-2.0 | 668 | [
"pymatgen"
] | 5ea3736e012c19682a12673b86696481a4a2014f61d88a56f7528dc184594418 |
# -*- coding: utf-8 -*-
"""
This module implements a Python-to-SQLAlchemy syntax parser.
Allows the SQLAlchemy data-layer to seamlessy respond to a
Python-like query.
:copyright: (c) 2013 by Andrew Mleczko and Tomasz Jezierski (Tefnet)
:license: BSD, see LICENSE for more details.
"""
import re
imp... | lingfish/eve-sqlalchemy | eve_sqlalchemy/parser.py | Python | bsd-3-clause | 8,184 | [
"VisIt"
] | 43ec045060380f715a3923479546aa5c85764a72b28b9a1b1cae7aae607051b7 |
"""
Cosmology Regression Example
----------------------------
Figure 8.11
A Gaussian process regression analysis of the simulated supernova sample used
in figure 8.2. This uses a squared-exponential covariance model, with bandwidth
learned through cross-validation.
"""
# Author: Jake VanderPlas
# License: BSD
# The ... | nhuntwalker/astroML | book_figures/chapter8/fig_gp_mu_z.py | Python | bsd-2-clause | 2,798 | [
"Gaussian"
] | 104a329cc3be94de7cc53433672f56db86e674672142fc345b5922209f4b042b |
import PythonQt
from PythonQt import QtCore, QtGui, QtUiTools
from ddapp import applogic as app
from ddapp import visualization as vis
from ddapp.debugVis import DebugData
from ddapp import transformUtils
from ddapp.timercallback import TimerCallback
from ddapp.simpletimer import FPSCounter
from ddapp import objectmode... | gizatt/director | src/python/ddapp/affordancepanel.py | Python | bsd-3-clause | 5,243 | [
"VTK"
] | 65fa8717166b4fb06d5a24517c76ca977501589802766d6a36e8fdb3a218bebb |
from skimage._shared import testing
from skimage._shared.testing import assert_array_equal, assert_allclose
import numpy as np
from skimage.data import camera
from skimage.util import random_noise, img_as_float
def test_set_seed():
seed = 42
cam = camera()
test = random_noise(cam, seed=seed)
assert_a... | kenshay/ImageScript | ProgramData/SystemFiles/Python/Lib/site-packages/skimage/util/tests/test_random_noise.py | Python | gpl-3.0 | 8,021 | [
"Gaussian"
] | cf2dc2d55c4563341a30a5534257340071a5d68e36ab4fc960cf78f46932b80d |
from itertools import cycle
import numpy
from matplotlib import pyplot
from skimage import filters
class GANDemoVisualizer:
def __init__(self, title, l_kde=100, bw_kde=5):
self.title = title
self.l_kde = l_kde
self.resolution = 1. / self.l_kde
self.bw_kde_ = bw_kde
self.fi... | frombeijingwithlove/dlcv_for_beginners | random_bonus/gan_n_cgan_2d_example/visualizer.py | Python | bsd-3-clause | 3,884 | [
"Gaussian"
] | 6a89aead07152a6f233c760bf4cb74254212c109ebd38b36f458c589ce2b7fd4 |
import math
from ..libmp.backend import xrange
class QuadratureRule(object):
"""
Quadrature rules are implemented using this class, in order to
simplify the code and provide a common infrastructure
for tasks such as error estimation and node caching.
You can implement a custom quadrature rule by ... | ojengwa/sympy | sympy/mpmath/calculus/quadrature.py | Python | bsd-3-clause | 38,282 | [
"Gaussian"
] | f8e2e7d120d464f3665fb9b2bec3ebd7916fbe51402afce2e741cb84f25ee319 |
from PyQt5.QtCore import Qt
from PyQt5.QtGui import QDropEvent
from PyQt5.QtTest import QTest
from PyQt5.QtWidgets import QApplication
from tests.QtTestCase import QtTestCase
from urh.controller.dialogs.ModulatorDialog import ModulatorDialog
from urh.util.Logger import logger
class TestModulatorGUI(QtTestCase):
... | jopohl/urh | tests/test_modulator_gui.py | Python | gpl-3.0 | 7,356 | [
"Gaussian"
] | 70641ccccee15b606eb9ceb0ee2256da2458947a0e9b305736e5268c8db57b42 |
import numpy, scipy
import pyturbo as p
######################################
# pour lire un fichier surface SNC
path_snc = "indiquer.snc"
r = p.LecteurSNC(file_path = path_snc)
r.lire_parametres()
r.get_infos_temporelles() # ca affiche des trucs
r.get_infos_variables() # ca affiche d'autres trucs
# on peut lire le... | aurmarsan/pyturbo | exemples/exemple-lecteur-fnc-snc.py | Python | mit | 3,584 | [
"VTK"
] | ed3b400e858b328a2d30bd512000ea0fdb65404648e596f11c8d6eaa87370c66 |
#!/usr/bin/python
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# Ansible is distributed... | feanil/ansible-modules-core | cloud/amazon/elasticache.py | Python | gpl-3.0 | 21,293 | [
"Dalton"
] | 55e3e9236f16d7524e40552d8f612ab0e17fc37f9c4dd1258a1df9209bf450d7 |
# Copyright (c) 2015, Frappe Technologies Pvt. Ltd. and Contributors
# License: GNU General Public License v3. See license.txt
from __future__ import unicode_literals
import frappe
from frappe.utils import add_days, getdate, cint, cstr
from frappe import throw, _
from erpnext.utilities.transaction_base import Transa... | manqala/erpnext | erpnext/maintenance/doctype/maintenance_schedule/maintenance_schedule.py | Python | gpl-3.0 | 9,320 | [
"VisIt"
] | e5f68348cc6c7c29cc1dce1bb18dc364cd5a13b5934e47e4d2c7104e3b4b72db |
#!/usr/bin/env python
# encoding: utf-8
# === IMPORTANT ====
# NOTE: In order to support non-ASCII file names,
# your system's locale MUST be set to 'utf-8'
# CAVEAT: DOESN'T work with proxy, the underlying reason being
# the 'requests' package used for http communication doesn't seem
# to work ... | rocky1001/bypy | bypy.py | Python | mit | 115,684 | [
"VisIt"
] | 3646ead66d90677aa9c3cfa94bb36793f2ddf8c562fd73e04ed8899cade9f7e6 |
"""
A buffered iterator for big arrays.
This module solves the problem of iterating over a big file-based array
without having to read it into memory. The `Arrayterator` class wraps
an array object, and when iterated it will return sub-arrays with at most
a user-specified number of elements.
"""
from __future__ impor... | LumPenPacK/NetworkExtractionFromImages | win_build/nefi2_win_amd64_msvc_2015/site-packages/numpy/lib/arrayterator.py | Python | bsd-2-clause | 7,256 | [
"NetCDF"
] | 578384c995aba28fa1b2501df994010e42c3be1375ee75bcf0b76f4f8e4cb773 |
# -*- coding: utf-8 -*-
#
# Copyright (c) 2020, the cclib development team
#
# This file is part of cclib (http://cclib.github.io) and is distributed under
# the terms of the BSD 3-Clause License.
"""Parser for Formatted Checkpoint files"""
from __future__ import print_function
import re
import numpy
from cclib.p... | ATenderholt/cclib | cclib/parser/fchkparser.py | Python | bsd-3-clause | 13,385 | [
"Gaussian",
"Q-Chem",
"cclib"
] | 6859b64298716ba6cab93a27159c9d2a5047c86ecf9f090c1b61b191883330ac |
# Copyright (C) 2012,2013
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of t... | BackupTheBerlios/espressopp | src/Exceptions.py | Python | gpl-3.0 | 2,439 | [
"ESPResSo"
] | b147aa5be0cc248462bc4d30383313fa4cf85461c2d8a26d632535d886e385ce |
# Orca
#
# Copyright 2005-2009 Sun Microsystems Inc.
# Copyright 2010-2011 Orca Team
# Copyright 2011-2015 Igalia, S.L.
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version ... | pvagner/orca | src/orca/scripts/web/braille_generator.py | Python | lgpl-2.1 | 6,821 | [
"ORCA"
] | de7c028906d5647ec4ea921ea0d7d6873c2ad20adf8827bafbe389c142962d2a |
# -*- coding: utf-8 -*-
"""
sphinx.writers.texinfo
~~~~~~~~~~~~~~~~~~~~~~
Custom docutils writer for Texinfo.
:copyright: Copyright 2007-2013 by the Sphinx team, see AUTHORS.
:license: BSD, see LICENSE for details.
"""
import re
import string
import textwrap
from os import path
from docutils imp... | SurfasJones/icecream-info | icecream/lib/python2.7/site-packages/sphinx/writers/texinfo.py | Python | mit | 45,530 | [
"VisIt"
] | c85791bf57b02bb19f2b7dcb4ebe88b409b0e62ad3292e10ef4dfe91d8c5f821 |
#!/usr/bin/python
import sys
import fnmatch
import os
import glob
import shutil
import argparse
import time
import matplotlib
# Force matplotlib to not use any Xwindows backend.
matplotlib.use('Agg')
import pylab as pl
from matplotlib.ticker import MultipleLocator, FormatStrFormatter
currentdir = os.getcwd()
parser ... | ederc/LA-BENCHER | scripts/plot.py | Python | gpl-3.0 | 14,891 | [
"Gaussian"
] | 27006db25e33d272f897d467c6661e5079d099ffb1cd0ff7ce6d512987f86f29 |
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2002-2007 Donald N. Allingham
# Copyright (C) 2007-2008 Brian G. Matherly
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; ... | beernarrd/gramps | gramps/gen/filters/rules/place/__init__.py | Python | gpl-2.0 | 2,255 | [
"Brian"
] | f2cbbf7757bc9b2afb4c65a077e59286b9ece8878d8102e0a836ed225f80de4d |
#!/usr/bin/env $SCHRODINGER/run
from schrodinger.application.macromodel.input import *
import schrodinger.application.macromodel.utils as mmutils
import schrodinger.structure as struct
import schrodinger.structutils.analyze as ana
import os, glob
import multiprocessing as mp
from multiprocessing import Pool
def bmin... | ericchansen/q2mm | smiles_to_catvs/scripts/finish.py | Python | mit | 1,637 | [
"MacroModel"
] | 3c43b9fd583f44fcd1c14e7de12a2c3cd9f88f77520a9874a84252d6c062c1fc |
##############################################################################
# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-64... | skosukhin/spack | var/spack/repos/builtin/packages/libxc/package.py | Python | lgpl-2.1 | 3,469 | [
"CP2K",
"Octopus"
] | 652278e385a4fcb16422c5caa597bfdea6e89e263875718fa90c33a04e448466 |
# --------------------------------------------------------------------------------------------
# Copyright (c) Microsoft Corporation. All rights reserved.
# Licensed under the MIT License. See License.txt in the project root for license information.
# --------------------------------------------------------------------... | yugangw-msft/azure-cli | src/azure-cli/azure/cli/command_modules/appservice/commands.py | Python | mit | 28,002 | [
"ASE"
] | 82489f9db5424a5a229e73d732fbf12583b0c11bf46a13070b46787ac245aa48 |
# Copyright (c) 2012 Google Inc. All rights reserved.
# Use of this source code is governed by a BSD-style license that can be
# found in the LICENSE file.
from __future__ import with_statement
import collections
import errno
import filecmp
import os.path
import re
import tempfile
import sys
# A minimal memoizing d... | lidabing/xgyp | gyp/pylib/gyp/common.py | Python | bsd-3-clause | 19,046 | [
"VisIt"
] | 47348cab62af28f0ee3be5533472b77611fda80434bfbef7770c94b78293dafe |
#!/usr/bin/env python
import sys
from collections import Iterable
from shlex import split as shlex_split
from collections import Iterable, defaultdict
import requests
from progressbar import Bar, Counter, ETA, \
FileTransferSpeed, Percentage, \
ProgressBar, Timer, Unknow... | XiaoJianfeng/ibl | biomart.py | Python | lgpl-3.0 | 27,729 | [
"Bioconductor"
] | a429455f8de00f880345d19caf5e45b8d796524903688e4983290af9da6762d5 |
from __future__ import absolute_import
import cython
cython.declare(PyrexTypes=object, Naming=object, ExprNodes=object, Nodes=object,
Options=object, UtilNodes=object, LetNode=object,
LetRefNode=object, TreeFragment=object, EncodedString=object,
error=object, warning=object... | poojavade/Genomics_Docker | Dockerfiles/gedlab-khmer-filter-abund/pymodules/python2.7/lib/python/Cython/Compiler/ParseTreeTransforms.py | Python | apache-2.0 | 117,833 | [
"VisIt"
] | eed090dd1f92c55f9f6098043488ebed8c1fde4e9addb8a9acd5fdb3e57cc8d0 |
#! Tests out the CG solver with CPHF Polarizabilities
import time
import numpy as np
import psi4
#psi4.set_output_file("output.dat")
# Benzene
mol = psi4.geometry("""
0 1
O 0.000000000000 0.000000000000 -0.075791843589
H 0.000000000000 -0.866811828967 0.601435779270
H ... | rmcgibbo/psi4public | tests/psi4numpy/cphf/input.py | Python | lgpl-3.0 | 2,690 | [
"Psi4"
] | dc9bc51af6c450b98a702f3bdadb6888708397f15db9375b375ac4ac460c99ff |
#!/usr/bin/python
# -*- coding: utf-8 -*-
#
# --- BEGIN_HEADER ---
#
# extcertaction - Handle user input from external certificate sign up
# Copyright (C) 2003-2009 The MiG Project lead by Brian Vinter
#
# This file is part of MiG.
#
# MiG is free software: you can redistribute it and/or modify
# it under the terms of... | heromod/migrid | mig/cgi-bin/extcertaction.py | Python | gpl-2.0 | 1,177 | [
"Brian"
] | 9c9683f578f2c35113f41f37ac59ee90e73622b80107414604c3c7cf835b3f21 |
import os
import pickle
import random
import re
import string
import warnings
import webbrowser
import twitter # pip install python-twitter
import sexmachine.detector as gender # pip install SexMachine
from requests_oauthlib import OAuth1Session
from unidecode import unidecode # pip... | YesWeTech/whoIsJ | scripts/analyze.py | Python | mit | 10,827 | [
"VisIt"
] | 78e449235475a65428f24cbb4effc4e672b9f46099808c71737b7b228770ca85 |
import os
import unittest
import random
import math
import tempfile
import time
import numpy
from __main__ import vtk, qt, ctk, slicer
from slicer.ScriptedLoadableModule import *
#
# TargetRegistrationError
#
class TargetRegistrationError(ScriptedLoadableModule):
"""Uses ScriptedLoadableModule base class, available... | tokjun/FiducialRegistrationTest | TargetRegistrationError/TargetRegistrationError.py | Python | bsd-3-clause | 9,022 | [
"VTK"
] | c80df622b5cb3348302051b6594497bd2601820afa1362fb98c60c0171d90be3 |
import os
import re
from bs4 import BeautifulSoup
from decimal import Decimal as D
from ..base import BaseAccountScraper
class CoastCapitalScraper(BaseAccountScraper):
scrape_code = 'coast_capital'
default_currency = 'CAD'
def login(self):
self.browser.visit('https://www.coastcapitalsavings.com... | elbaschid/geldmaschine | geldmaschine/scrapers/ca/coast_capital.py | Python | mit | 1,853 | [
"VisIt"
] | a5c000a9cf4fdbc7bb0f23632aa148ec432740d95661051eeb4e5ba54ce87fec |
# encoding: utf-8
import datetime
from south.db import db
from south.v2 import SchemaMigration
from django.db import models
class Migration(SchemaMigration):
def forwards(self, orm):
# Adding field 'Indicator.data_type'
db.add_column('profiles_indicator', 'data_type', self.gf('django.db.m... | 216software/Profiles | communityprofiles/profiles/oldmigrations/0024_auto__add_field_indicator_data_type.py | Python | mit | 12,944 | [
"MOE"
] | d441b1be6263e3221dfc7795097fbcda44ddec23c6438d6653da3def6683fd69 |
#############################
# evaluate alignment software
# include a cfg file on the command line
#############################
import ConfigParser as configparser
import datetime
import os
import sys
import bio
import config
import matplotlib.pyplot as plt
cfg = configparser.ConfigParser()
#config('reference_pr... | supernifty/mgsa | mgsa/evaluate.py | Python | mit | 6,809 | [
"Bowtie"
] | 47618c259f9c525b29f2ec947ce1e4f7970b1e05e4485c6a1f22608b4f1d0f15 |
"""A simple grid plane module.
"""
# Author: Prabhu Ramachandran <prabhu_r@users.sf.net>
# Copyright (c) 2005, Enthought, Inc.
# License: BSD Style.
# Enthought library imports.
from traits.api import Instance
from traitsui.api import View, Group, Item
# Local imports
from mayavi.core.module import Module
from mayav... | dmsurti/mayavi | mayavi/modules/grid_plane.py | Python | bsd-3-clause | 3,923 | [
"Mayavi",
"VTK"
] | 2069424a51a659ea8569fb50217400b034813c02c5a31aaae726f25c58e80046 |
########################################################################
# $HeadURL $
# File: ForwardDISETTests.py
# Author: Krzysztof.Ciba@NOSPAMgmail.com
# Date: 2013/04/18 09:23:05
########################################################################
""" :mod: ForwardDISETTests
=======================
.... | yujikato/DIRAC | src/DIRAC/RequestManagementSystem/Agent/RequestOperations/test/ForwardDISETTests.py | Python | gpl-3.0 | 2,576 | [
"DIRAC"
] | 818fb34237b6eede7a59de0ff6439404befd185b32a999d99967a4897857403d |
###########################################################################
#
# This program is part of Zenoss Core, an open source monitoring platform.
# Copyright (C) 2008, Zenoss Inc.
#
# This program is free software; you can redistribute it and/or modify it
# under the terms of the GNU General Public License versi... | zenoss/ZenPacks.altea.SQLServer | setup.py | Python | gpl-2.0 | 3,300 | [
"VisIt"
] | 9b234ea3723bf9f368239e49de3ac83d158e2763cc2982f1a7e63ef66b26ca13 |
#!/usr/bin/env python
import cPickle as pkl
import glob
import os.path as pth
from pdb import set_trace
import io
import socket
import numpy as np
import scipy
from jinja2 import Template
import flask
from flask import Flask, request, render_template, send_file, jsonify, url_for, send_from_directory
app = Flask(__nam... | mcogswell/cnn_treevis | app.py | Python | mit | 6,326 | [
"NEURON"
] | 98648a5f65904730603c5403cbbf5fa154ac637403b9041530955c7519cdca4f |
"""
Logging
"""
__RCSID__ = "$Id$"
import logging
import os
from DIRAC import S_ERROR
from DIRAC.FrameworkSystem.private.standardLogging.LogLevels import LogLevels
from DIRAC.Core.Utilities.LockRing import LockRing
from DIRAC.Resources.LogBackends.AbstractBackend import AbstractBackend
class Logging(object):
"""... | fstagni/DIRAC | FrameworkSystem/private/standardLogging/Logging.py | Python | gpl-3.0 | 18,880 | [
"DIRAC"
] | bfa8b00c570571f67247be7e0ccca3d085328b9c837efd5e6d4711ef09774ec3 |
#!/usr/bin/env python3
# -*-coding:Utf-8 -*
"""Use MCMC to find the stellar mass halo mass relation.
Based on the Behroozi et al 2010 paper.
Use a parametrization of the SHMR, plus a given HMF to find the expected SMF and compare it
to the observed SMF with its uncertainties using a likelihod maximisation.
Started o... | Gorbagzog/StageIAP | MCMC_SHMR_main_clean_iterations.py | Python | gpl-3.0 | 49,098 | [
"Gaussian",
"TINKER"
] | fb9d6dba0a9916313211c35c81bc8a239ceb055f09a586e3041b2c4d12a3e8dd |
"""
Acceptance tests for the Import and Export pages
"""
from nose.plugins.attrib import attr
from datetime import datetime
from flaky import flaky
from abc import abstractmethod
from bok_choy.promise import EmptyPromise
from .base_studio_test import StudioLibraryTest, StudioCourseTest
from ...fixtures.course import... | JioEducation/edx-platform | common/test/acceptance/tests/studio/test_import_export.py | Python | agpl-3.0 | 16,914 | [
"VisIt"
] | a38f4d9784f9918e96dd8025f6f6d70f3ae33efcd1c3154aed5b1247f8fdaf6d |
# Copyright (C) 2012 Olaf Lenz
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# ESPR... | icimrak/espresso | config/gen_featureconfig.py | Python | gpl-3.0 | 3,582 | [
"ESPResSo"
] | 7d22b1d180a2c65fc65e1d077de8921f0a98945b7f7f22bdda5df5588de1c93b |
# -*- coding: utf-8 -*-
# modRana - shared utility classes and methods
import threading
import os
import sys
import subprocess
import re
import time
from core import constants
from core import qrc
if qrc.is_qrc:
import pyotherside
import logging
log = logging.getLogger("core.utils")
REQUEST_TOKEN_URL = 'https:... | M4rtinK/tsubame | core/utils.py | Python | gpl-3.0 | 15,120 | [
"VisIt"
] | b7bf016e0ffc73ccf78d3031aceacd396518a8e05a7a7afd1525169f55046ca5 |
from asap3 import *
from ase.lattice.cubic import FaceCenteredCubic
from asap3.testtools import ReportTest
from asap3.md.velocitydistribution import MaxwellBoltzmannDistribution
from asap3 import mpi
from ase.data import reference_states
import numpy as np
import time
import sys
debug = 0
if debug == 1:
DebugOutpu... | auag92/n2dm | Asap-3.8.4/Test/Timing/OpenKIM_Profiling.py | Python | mit | 3,171 | [
"ASE"
] | 8c174b4f430b0ac1a58e1342a625c0e562e23426e55e102845fc757f6cf2a5ba |
#!/usr/bin/python3
# -*- coding: utf-8 -*-
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is distrib... | ladyteam/ramanpy | raman_fd.py | Python | gpl-2.0 | 29,898 | [
"ABINIT",
"CASTEP",
"CP2K",
"CRYSTAL",
"VASP",
"phonopy"
] | 9715a4a7862dc789466277282f83078e3740a3efc1acfe2c6a1a7798505d2037 |
# -*- coding: utf-8 -*-
"""
CreateInflowFileFromERAInterimRunoff.py
RAPIDpy
Created by Alan D. Snow, 2015
Adapted from CreateInflowFileFromECMWFRunoff.py.
License: BSD-3-Clause
"""
from netCDF4 import Dataset
from .CreateInflowFileFromGriddedRunoff import \
CreateInflowFileFromGriddedRu... | erdc-cm/RAPIDpy | RAPIDpy/inflow/CreateInflowFileFromERAInterimRunoff.py | Python | bsd-3-clause | 1,861 | [
"NetCDF"
] | d1fabb9a72611d2cc4a140fbb634686072b193facc6aed893f8360c7544913f7 |
# -*- coding: utf-8 -*-
#
# Copyright (c) 2017, the cclib development team
#
# This file is part of cclib (http://cclib.github.io) and is distributed under
# the terms of the BSD 3-Clause License.
"""Test single point time-dependent logfiles in cclib"""
import os
import unittest
import numpy
from skip import skipFo... | gaursagar/cclib | test/data/testTD.py | Python | bsd-3-clause | 4,519 | [
"ADF",
"Dalton",
"cclib"
] | 26622e1d02be2c0fdced7bc722325cea45ed9d81368e8048fed762f9609c4c4a |
import numpy as np
import pandas as pd
class NamingScheme:
def __init__(self):
self.subfix_mean = "_mean"
self.subfix_error = "_error"
self.special_columns = set(['AcceptRatio', 'BlockCPU', 'BlockWeight'
, 'Efficiency', 'TotalSamples', 'TotalTime', 'Variance', 'LocalEnergy'])
# e... | Paul-St-Young/QMC | dmc_database_analyzer.py | Python | mit | 11,314 | [
"QMCPACK"
] | 4d3b30ccb19a95f0da2b1fd5654f7c0210bcffa7121e816c3425ab27ae521147 |
from .. import upsample
import numpy as np
import itertools
def gaussian_centered(imsize, upsample_factor=1):
"""
Create a narrow Gaussian with peak at the center of the image if
dims are odd or center+1 if dims are even
"""
if imsize % 2 == 1:
xx,yy = np.meshgrid(np.linspace(-5,5,imsize),n... | keflavich/image_registration | image_registration/fft_tools/tests/test_upsample.py | Python | mit | 13,842 | [
"Gaussian"
] | 489a2de5928ab38c174b255844b828f4916c6e7798bcde94ed6fd85825771c11 |
# Encoding: utf-8
# Copyright (C) 2012-2016 Olivier Castany
# This program is free software (see LICENCE file)
"""Berreman4x4: module implementing Berreman's 4x4 matrix method.
See file "documentation.pdf"
"""
import numpy
import scipy.linalg, scipy.interpolate
from numpy import pi, newaxis
import matplotlib, matpl... | Berreman4x4/Berreman4x4 | Berreman4x4.py | Python | gpl-3.0 | 69,272 | [
"CRYSTAL",
"Gaussian"
] | 46a85aaf6a78fcf3e4c3e90011ed2ac3eb67a7d209a3d7ceb38a7ff586c10bfd |
#!/usr/bin/env python
from tempfile import TemporaryFile, SpooledTemporaryFile
import os, sys, re, socket, time, pickle, csv, uuid, subprocess, argparse, decimal, select, platform, signal
class Debugger:
"""
The Debugger class is the entry point to our stack tracing capabilities.
It determins which debugger to inhe... | katyhuff/moose | scripts/memory_logger.py | Python | lgpl-2.1 | 48,905 | [
"MOOSE"
] | 6672f1fe83b4b2c28013a380427601baa767abe690c323877c5a71cc286630bc |
#!/usr/bin/env python
from __future__ import print_function
import os
import itertools
import collections
import regex as re
import json
import gzip
import sys
import logging
import time
import multiprocessing
import tempfile
from io import BufferedReader
from functools import partial
import toolz as tz
from .barcod... | roryk/umis | umis/umis.py | Python | mit | 47,603 | [
"pysam"
] | f75eb311167a70c3f7e9793fff6f76d6c2ce670baf31032bda98b69f81c10535 |
# -*- coding: utf-8 -*-
#
# Python Flot Utils documentation build configuration file, created by
# sphinx-quickstart on Thu Feb 17 16:27:52 2011.
#
# This file is execfile()d with the current directory set to its containing dir.
#
# Note that not all possible configuration values are present in this
# autogenerated fil... | unbracketed/python-flot-utils | docs/conf.py | Python | mit | 8,183 | [
"Brian"
] | 07a4c1ad64115db634b830474463b1c2d86d80d94890b4ff4f1a8cd7eedbf61f |
#!/usr/bin/env python
#===============================================================================
# Copyright (c) 2014 Geoscience Australia
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
#... | GeoscienceAustralia/gdf | utils/agdc2gdf.py | Python | apache-2.0 | 38,712 | [
"NetCDF"
] | e07055c335999148e0b8f5274519d5ec5a966ae68981839185ef8aebde2e0215 |
#!/usr/bin/python
import httplib2
import os
import sys
from apiclient.discovery import build
from apiclient.errors import HttpError
from oauth2client.client import flow_from_clientsecrets
from oauth2client.file import Storage
from oauth2client.tools import argparser, run_flow
def deletep(playlistid):
print "In dele... | ankit96/flockathon | deleteplaylist.py | Python | mit | 1,728 | [
"VisIt"
] | d414bfb64c24081416cd600a02b55c68a0efeaccdf59c376f520212e59d158b6 |
#===============================================================================
# LICENSE XOT-Framework - CC BY-NC-ND
#===============================================================================
# This work is licenced under the Creative Commons
# Attribution-Non-Commercial-No Derivative Works 3.0 Unported Li... | SMALLplayer/smallplayer-image-creator | storage/.xbmc/addons/net.rieter.xot.smallplayer/resources/libs/regexer.py | Python | gpl-2.0 | 7,502 | [
"VisIt"
] | 9704c35359935b71b5d56aa1db17f5cd3c2e5ca814efc5b14db668fba2a697df |
##############################################################################
# MDTraj: A Python Library for Loading, Saving, and Manipulating
# Molecular Dynamics Trajectories.
# Copyright 2012-2014 Stanford University and the Authors
#
# Authors: Peter Eastman, Robert McGibbon
# Contributors: Kyle A. Beaucha... | mpharrigan/mdtraj | mdtraj/core/topology.py | Python | lgpl-2.1 | 48,802 | [
"MDTraj",
"OpenMM",
"VMD"
] | 66cae00b7bd52ce14cf03c3e533d283d628b42bb79f0f5375fefdb8b96dcd8b4 |
# -*- coding: utf-8 -*-
#########################################################################
## This program is part of 'MOOSE', the
## Messaging Object Oriented Simulation Environment.
## Copyright (C) 2014 Upinder S. Bhalla. and NCBS
## It is made available under the terms of the
## GNU Lesser General ... | dilawar/moose-core | tests/core/test_Xreacs3.py | Python | gpl-3.0 | 3,980 | [
"MOOSE"
] | d15dcf41d184d885c760e1be295f66685f6035c311cd0ed7cf3f31abfc83da1b |
##
# Copyright 2009-2021 Ghent University
#
# This file is part of EasyBuild,
# originally created by the HPC team of Ghent University (http://ugent.be/hpc/en),
# with support of Ghent University (http://ugent.be/hpc),
# the Flemish Supercomputer Centre (VSC) (https://www.vscentrum.be),
# Flemish Research Foundation (F... | hpcugent/easybuild-easyblocks | easybuild/easyblocks/o/openfoam.py | Python | gpl-2.0 | 26,760 | [
"ParaView"
] | 4cb5da489c622d53c92b0298989420040fdc8fd0ed7547e986984eaf41a4fe25 |
# This file is part of cldoc. cldoc is free software: you can
# redistribute it and/or modify it under the terms of the GNU General Public
# License as published by the Free Software Foundation, version 2.
#
# This program is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the ... | jordonbiondo/cldoc | cldoc/tree.py | Python | gpl-2.0 | 16,435 | [
"VisIt"
] | 99d7d0c93f238bf0d2f5e0980f8d8d4e915618d9876243ffd65a53d78fde67c8 |
#!/usr/bin/python
# coding: utf-8
#----------------------------------------------------------------
# Author: Max Geislinger
# Description: este algoritmo descreve a sétima implementação de OpenCV
# Function: Digital Image -> Transform HSV -> Binary Image -> Erosion Binary -> Find area -> Find Coordinates
# Function ... | xamgeis/RoboPi | MOVIMENTO_HORIZONTAL.py | Python | mit | 9,598 | [
"Gaussian"
] | fa5870cf7e844fda91ae832be4c5679c7b64d5111328690a3bc75c82c89b1962 |
import pytest
from ethereum import tester
from ethereum import utils
from ethereum._solidity import get_solidity
serpent_contract = """
extern solidity: [sub2:[]:i]
def main(a):
return(a.sub2() * 2)
def sub1():
return(5)
"""
solidity_contract = """
contract serpent { function sub1() returns (int256 y) {} ... | holiman/pyethereum | ethereum/tests/test_solidity.py | Python | mit | 23,800 | [
"MOOSE"
] | 7cf79511f6e460c070982f46befdc9d32742b7dc4fe6a1d703d994276b7f2d9c |
import logging
from cStringIO import StringIO
from math import exp
from lxml import etree
from path import path # NOTE (THK): Only used for detecting presence of syllabus
import requests
from datetime import datetime
import dateutil.parser
from lazy import lazy
from opaque_keys.edx.locations import Location
from xmod... | geekaia/edx-platform | common/lib/xmodule/xmodule/course_module.py | Python | agpl-3.0 | 42,207 | [
"VisIt"
] | 4a22e0e194bee1904f894e865996b4cb83e5b02d4212f6ebec5f6dcd1f4c40ea |
"""
This script contains miscellaneous functions.
"""
from scipy.interpolate import interp1d
import numpy as n
from os.path import join
import os
kla=lambda ll :2.659 *(-2.156+1.509/ll-0.198/ll**2+0.011/ll**3 ) + 4.05
klb=lambda ll :2.659 *(-1.857+1.040/ll)+4.05
def CalzettiLaw(ll):
"""
Calzetti (2000) extinction... | JohanComparat/pySU | galaxy/python/MiscellanousFunctionsLibrary.py | Python | cc0-1.0 | 556 | [
"Galaxy"
] | 6dce283bd175bf9a5565483e348f3767b0e821fd97e548db0829b1155e9e3409 |
# @ImagePlus inputImage
# @double sigma
# @OUTPUT ImagePlus outputImage
from ij import IJ
from ij.plugin import Duplicator, ImageCalculator
backgroundImage = Duplicator().run(inputImage)
IJ.run(backgroundImage, "Gaussian Blur...", "sigma=" + str(sigma))
outputImage = ImageCalculator().run("Subtract create 32-bit", inpu... | imagej/imagej-omero | scripts/Subtract_Background.py | Python | gpl-2.0 | 378 | [
"Gaussian"
] | 742efda08747e88b53f72ddbc146a717fba3b9adc8c3cd304f9395f8022ee640 |
from __future__ import print_function
import numpy as np
import inspect
import sys, pdb
from . import Utils
from . import Optimizers
from . import BuiltinStepMethods
"""
This module defines the fundamental objects used for building models and
maximising/sampling from their posterior distributions. Namely:
Sampler
... | tomevans/pyhm | pyhm/ModelObjs.py | Python | gpl-2.0 | 12,567 | [
"Gaussian"
] | 4cb86daa6be9259ccda80b302815bd194d0365c71a8c510928a125bf99ff2b3a |
## \file
## \ingroup tutorial_pyroot
## Example of function called when a mouse event occurs in a pad.
## When moving the mouse in the canvas, a second canvas shows the
## projection along X of the bin corresponding to the Y position
## of the mouse. The resulting histogram is fitted with a gaussian.
## A "dynamic" lin... | krafczyk/root | tutorials/pyroot/DynamicSlice.py | Python | lgpl-2.1 | 3,847 | [
"Gaussian"
] | 77e324004c81f751337b8eaf7c512f945133c6febef56b57e9bdeb8bcc27e575 |
# coding=utf-8
# --------------------------------------------------------------------------
# Copyright (c) Microsoft Corporation. All rights reserved.
# Licensed under the MIT License. See License.txt in the project root for license information.
# Code generated by Microsoft (R) AutoRest Code Generator.
# Changes may ... | Azure/azure-sdk-for-python | sdk/appservice/azure-mgmt-web/azure/mgmt/web/v2020_06_01/models/_models_py3.py | Python | mit | 946,598 | [
"ASE"
] | 26c52577f257dd4b94951a8cc54133e5fefa5fa3dbeb89815678f787ff32ae0a |
#
# Copyright 2013 Quantopian, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in wr... | CarterBain/AlephNull | tests/test_perf_tracking.py | Python | apache-2.0 | 42,591 | [
"COLUMBUS"
] | 79948af5cf0275f227cb176c595e96195b1ea55eeab3c7f06390ab64992ee53b |
###############################################################################
##
## Copyright (C) 2006-2011, University of Utah.
## All rights reserved.
## Contact: contact@vistrails.org
##
## This file is part of VisTrails.
##
## "Redistribution and use in source and binary forms, with or without
## modification, ... | CMUSV-VisTrails/WorkflowRecommendation | vistrails/packages/vtk/init.py | Python | bsd-3-clause | 54,112 | [
"VTK"
] | a34fe582464107bde486da5efd5b7d0ad13dc696dd35321e75c92b5a6bbdf0ed |
#!/usr/bin/env python
#
# Copyright 2002-2003 by Michael Hoffman. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
"""Bio.DocSQL: easy access to DB API databases.
>>> import os
... | zjuchenyuan/BioWeb | Lib/Bio/DocSQL.py | Python | mit | 6,088 | [
"Biopython"
] | 09f8b57c0082d63beb5faf333328c121eb49166803ba383094ae0c15bbb47db8 |
from mdconfig import *
from md_unit_converter import *
program = MD(dt=0.02, name="main")
md = program.compile(skip_compile=False)
unit_converter = MDUnitConverter(program)
# nodex_i is the number of processors in the i'th dimension
# Total number of processors is nodes_x*nodes_y*nodes_z
program.nodes_x = 1
program.n... | ComputationalPhysics/parallel_lennard_jones_md | base_code/run.py | Python | gpl-3.0 | 1,419 | [
"OVITO",
"VMD"
] | 896c9fd4051d99532ad730ab3ea4eb794435efd72eb501289ff0d67fbde57a58 |
# -*- coding: utf-8 -*-
{
"'Cancel' will indicate an asset log entry did not occur": "'cancelar' irá indicar que a entrada de log de ativo não ocorreu",
"A location that specifies the geographic area for this region. This can be a location from the location hierarchy, or a 'group location', or a location that has a bou... | sahana/Turkey | languages/pt-br.py | Python | mit | 271,384 | [
"VisIt"
] | c6f0ec0b8ef758624ace68406b8749b1a39e092853cded2663f2ec9eec1a0b27 |
#
# Copyright 2014 Flytxt
#
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the ... | himanshu14/GMM | PyGMM.py | Python | apache-2.0 | 2,736 | [
"Gaussian"
] | ac15dfeca68bb7ba3a25919345aa044414d2180eed3d5ecbeeb0286ff2aa123e |
#!/usr/bin/python
######################################################################
#
#
# Stereo-Proj is a python utility to plot stereographic projetion of a given crystal. It is designed
# to be used in electron microscopy experiments.
# Author: F. Mompiou, CEMES-CNRS
#
#
#######################################... | mompiou/stereo-proj | stereo-proj-pyqt.py | Python | gpl-2.0 | 88,031 | [
"CRYSTAL",
"Gaussian"
] | c9b50d610e9838b70481cf293fa24d31bd4cdc94196aab9e56da3eace232f351 |
#
# This source file is part of appleseed.
# Visit https://appleseedhq.net/ for additional information and resources.
#
# This software is released under the MIT license.
#
# Copyright (c) 2014-2019 The appleseedhq Organization
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this ... | dictoon/blenderseed | properties/__init__.py | Python | mit | 1,953 | [
"VisIt"
] | f715b13a8a176c5fb41352e9327f6ba1ca4471173ec736839d33836907cbb05e |
from kernel_exp_family.estimators.finite.gaussian import KernelExpFiniteGaussian
from kernel_exp_family.estimators.lite.gaussian import KernelExpLiteGaussian
from kernel_exp_family.estimators.lite.gaussian_low_rank import KernelExpLiteGaussianLowRank
from kernel_hmc.densities.gaussian import IsotropicZeroMeanGaussian,\... | karlnapf/kernel_hmc | kernel_hmc/examples/demo_trajectories.py | Python | bsd-3-clause | 2,391 | [
"Gaussian"
] | aa191d87af0f1e51b66eebcdca78352cc950aeb9222dcdcf3c9acd5b2bc812bf |
import h5py
import numpy as np
import pytest
from pysisyphus.calculators.PySCF import PySCF
from pysisyphus.helpers import geom_loader
from pysisyphus.io.hessian import save_hessian
from pysisyphus.optimizers.RFOptimizer import RFOptimizer
from pysisyphus.testing import using
@pytest.fixture
def geom():
fn = "li... | eljost/pysisyphus | tests/test_hessian/test_hessian.py | Python | gpl-3.0 | 795 | [
"PySCF"
] | 91b44161c87ca9d730b0ab55072790ca76b03ff779be29f239e3bfb132d0d18e |
# -*- coding: utf-8 -*-
"""Additional summary functions for BEL graphs to supplement :mod:`pybel.struct.summary`.
These scripts are designed to assist in the analysis of errors within BEL documents
and provide some suggestions for fixes.
"""
from .composite_summary import * # noqa: F401,F403
from .contradictions im... | pybel/pybel-tools | src/pybel_tools/summary/__init__.py | Python | mit | 679 | [
"Pybel"
] | 9d90f677f52399692a7abbabd05f130bd91777cd7319a32c07528e345c386fef |
#!/usr/bin/python
# -*- coding: utf-8 -*-
import os
from pcraster.framework import *
import pcraster as pcr
import logging
logger = logging.getLogger(__name__)
import virtualOS as vos
from ncConverter import *
import ETPFunctions as refPotET
class Meteo(object):
def __init__(self,iniItems,landmask,spinUp):
... | UU-Hydro/PCR-GLOBWB_model | modflow/scripts/meteo.py | Python | gpl-3.0 | 27,928 | [
"NetCDF"
] | 44a7218911b01c8f1b1ace92da31a7297f565090385d99567a6807ee7ebfede4 |
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2009 Brian G. Matherly
# Copyright (C) 2010 Douglas S. Blank
# Copyright (C) 2011-2019 Jerome Rapinat
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as publi... | sam-m888/addons-source | lxml/lxmlGramplet.py | Python | gpl-2.0 | 27,861 | [
"Brian"
] | 688385fb3e39d17eef4fc0714d1d356bf7d927fd5fe562e415765ad8dd18c6e1 |
# -*- coding: utf-8 -*-
"""
VQ - Vector Quantization methods.
Created on Tue Jun 7 10:23:06 2016
@author: chief
"""
from __future__ import (print_function)
__author__ = 'vlad'
__version__ = 0.3
__all__ = ['VQ', 'VQ_GMM']
from abc import ABCMeta, abstractmethod
from future.utils import bytes_to_native_str as nstr... | higex/qpath | encode/vq.py | Python | mit | 6,233 | [
"Gaussian"
] | b0b8189116164564b5fa9e3609d1b6b86b854a5a03fee46e56456b94c2d927e4 |
""" Cache for the Plotting service plots
"""
import os.path
import time
import threading
from DIRAC import S_OK, S_ERROR, gLogger
from DIRAC.Core.Utilities.DictCache import DictCache
from DIRAC.Core.Utilities.Graphs import graph
class PlotCache(object):
def __init__(self, plotsLocation=False):
self.plots... | DIRACGrid/DIRAC | src/DIRAC/FrameworkSystem/Service/PlotCache.py | Python | gpl-3.0 | 2,487 | [
"DIRAC"
] | 0fd38c49991f14dbbec04dd8aff16c4ae63a87200b74b2c3f6ab880f2578f80b |
import re
from util import hook, user, web
@hook.command(autohelp=False)
def commands(inp, say=None, notice=None, input=None, conn=None, bot=None, db=None):
"commands -- Gives a list of commands/help for a command."
funcs = {}
disabled = bot.config.get('disabled_plugins', [])
disabled_comm = bot.confi... | bytebit-ch/uguubot | plugins/help.py | Python | gpl-3.0 | 3,204 | [
"VisIt"
] | ee547d9fe92de56ae3c969abeec0c3e6afa8ab397532c495730c26dcb1eaed78 |
""" Bokeh is a Python interactive visualization library that targets modern
web browsers for presentation.
Its goal is to provide elegant, concise construction of novel graphics in the
style of d3.js, but also deliver this capability with high-performance
interactivity over very large or streaming datasets. Bokeh can ... | lukebarnard1/bokeh | bokeh/__init__.py | Python | bsd-3-clause | 867 | [
"VisIt"
] | 005dcd5f972f8d6fae03e5d65dba610e12720a28ee9c58ac96aa2b3285dd6131 |
import sys
import time as tm
import numpy as np
import ConfigParser
def getlist(option, sep=',', chars=None):
"""Return a list from a ConfigParser option. By default,
split on a comma and strip whitespaces."""
return [float(chunk.strip(chars)) for chunk in option.split(sep)]
class dnf:
def __init... | gdetor/neuralfieldDBSmodel | src/protocolC.py | Python | bsd-3-clause | 9,297 | [
"Gaussian",
"NEURON"
] | 4a94689b06a75354fccf9751adf78ed0472495621198940fe2816dd8d9678ebc |
# -*- coding: utf-8 -*-
# vi:si:et:sw=4:sts=4:ts=4
##
## Copyright (C) 2006-2008 Async Open Source <http://www.async.com.br>
## All rights reserved
##
## This program is free software; you can redistribute it and/or modify
## it under the terms of the GNU Lesser General Public License as published by
## the Free Softw... | tiagocardosos/stoq | stoqlib/reporting/service.py | Python | gpl-2.0 | 1,843 | [
"VisIt"
] | 05d44b6a747011f96dfce49e70187ca2b045acb4a8d842d940af063b9d7093bb |
# Hidden Markov Model Implementation
import pylab as pyl
import numpy as np
import matplotlib.pyplot as pp
from enthought.mayavi import mlab
import scipy as scp
import scipy.ndimage as ni
import scipy.io
import roslib; roslib.load_manifest('sandbox_tapo_darpa_m3')
import rospy
import hrl_lib.mayavi2_util as mu
impor... | tapomayukh/projects_in_python | sandbox_tapo/src/AI/Code for Project-3/HMM Code/hmm_crossvalidation_force_10_states.py | Python | mit | 15,469 | [
"Gaussian",
"Mayavi"
] | 0c89c3818bb07f8822c5c5c3535daf284d1d34c4a16c24e435967122ba215a76 |
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