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# Copyright Iris contributors
#
# This file is part of Iris and is released under the LGPL license.
# See COPYING and COPYING.LESSER in the root of the repository for full
# licensing details.
"""
Provides the infrastructure to support the common metadata API.
"""
from abc import ABCMeta
from collections import name... | SciTools/iris | lib/iris/common/metadata.py | Python | lgpl-3.0 | 53,855 | [
"NetCDF"
] | 2227bd6f923758abed38924a4f6e585617f545dfe56cebee873fe4ee973ec75d |
"""
Solver method for GP-based optimization which uses an inner-loop optimizer to
maximize some acquisition function, generally given as a simple function of the
posterior sufficient statistics.
"""
# future imports
from __future__ import division
from __future__ import absolute_import
from __future__ import print_fun... | jhartford/pybo | pybo/bayesopt/bayesopt.py | Python | bsd-2-clause | 12,068 | [
"Gaussian"
] | defb296e23b27fce1896368e6cd7ed046ea46e7fbb959ffc775aad50653f963b |
#!/usr/bin/env python
##
# \addtogroup scripts
# Simulation scripts and other tools for pre and postprocessing files
#
#
#
# \file parun
# @{
# \ingroup scripts
# \brief A driver for both single and mult-model simulations
#
#
from __future__ import print_function
from builtins import zip
from builtins import str
... | erdc/proteus | proteus/iproteus.py | Python | mit | 20,003 | [
"VTK"
] | e665fcecd25f974401348b6337579d70a7841f4b267ef30f559329a4180956bc |
# Copyright (C) 2010-2018 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later v... | hmenke/espresso | testsuite/python/ek_common.py | Python | gpl-3.0 | 2,973 | [
"ESPResSo"
] | 067cc74fa46a4280f8f180edbb2238704d71e47810c9aaf1d81f0e82996bf830 |
"""
Copyright (C) 2004-2015 Pivotal Software, Inc. All rights reserved.
This program and the accompanying materials are made available under
the terms of the under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
... | rvs/gpdb | src/test/tinc/tincrepo/mpp/models/sql_tc.py | Python | apache-2.0 | 56,379 | [
"ORCA"
] | 37eafae62286d6aac6a98f2527da0b761f99d348ec8931dc6f32dec8377dcaab |
import numpy as np
import tensorflow as tf
import h5py
from sklearn.preprocessing import OneHotEncoder
import matplotlib
matplotlib.use('Agg')
import matplotlib.pyplot as plt
import time
import scipy.io
# Functions for initializing neural nets parameters
def weight_variable(shape):
initial = tf.truncat... | Haunter17/MIR_SU17 | exp8/exp8d.py | Python | mit | 7,766 | [
"NEURON"
] | 5d5260b70722524af4b07abde2f14505b92a12d20c195b65ea3407866591904e |
class Mage:
def __init__(self):
self.name = "Merlin"
self.health = 50
self.attack = 25
self.defense = 15
self.speed = 10
self.element = "Water"
self.spells = [
"Absorb",
"Sting of Neptune",
"Healing... | munnellg/OfMagesAndMagic | teams/mystic_marvels/merlin.py | Python | mit | 3,741 | [
"BLAST"
] | 6cbcf6c9e8c40c55153af3e854ac4c286b87c77ff0ce940675694bf0a6394593 |
#!/usr/bin/env python
'''
doPost.py
python version of postprocessing script for identifying spikes and filtering the
output.
'''
import warnings
import sys
import numpy as np
import scipy.signal
import scipy.io
import argparse
#from IPython import embed
from postprocessing import *
from classify_phase import fit_MRF_... | kharris/prebotc-graph-model | postprocessing/doPost.py | Python | bsd-3-clause | 14,197 | [
"NEURON"
] | 127ecf656b5a455a8e87e17edf0243848ed3aadc08031023f0fa198a9feef6bb |
#!/usr/bin/env python
#
import webapp2
import re
from google.appengine.ext import db
from google.appengine.ext import blobstore
from google.appengine.ext.webapp import blobstore_handlers
import xml.etree.ElementTree as ET
import logging
headers = '''<!DOCTYPE html>
<html xmlns="http://www.w3.org/1999/xhtml" xml:lang=... | scor/schemaorg | headers.py | Python | apache-2.0 | 4,076 | [
"ESPResSo"
] | 536c8213a0502954270ff74fea3d01ec98b3b05abc09637fb7e7a7fa9d66696f |
#!/usr/bin/env python
""" load SampleAttribute into OSDF using info from data file """
import os
import re
from cutlass.SampleAttribute import SampleAttribute
import settings
from cutlass_utils import \
load_data, get_parent_node_id, list_tags, format_query, \
write_csv_headers, values_to_node_dict, write_out_cs... | JAX-GM/osdf_submit | nodes/sampleattribute.py | Python | gpl-3.0 | 4,116 | [
"VisIt"
] | 01748154f802fe7aae2021efad2fe25d3e2280700a942cdc138f874ec80d55f8 |
"""
=============================================
Integration and ODEs (:mod:`scipy.integrate`)
=============================================
.. currentmodule:: scipy.integrate
Integrating functions, given function object
============================================
.. autosummary::
:toctree: generated/
quad ... | sargas/scipy | scipy/integrate/__init__.py | Python | bsd-3-clause | 1,837 | [
"Gaussian"
] | e5437044366b0a367681347f950754b16c751def4a0da1af1cdcad860b449d67 |
# -*- coding: utf-8 -*-
# SyConn - Synaptic connectivity inference toolkit
#
# Copyright (c) 2016 - now
# Max Planck Institute of Neurobiology, Martinsried, Germany
# Authors: Philipp Schubert, Joergen Kornfeld
import glob
import os
import pickle as pkl
import shutil
import networkx as nx
import numpy as np
import sc... | StructuralNeurobiologyLab/SyConn | syconn/extraction/object_extraction_steps.py | Python | gpl-2.0 | 36,925 | [
"Gaussian"
] | 14dba14a1da41d6117458c7128f911f2a34834dfa82da7b4752e584e783db8c5 |
# Copyright 2015 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | keras-team/keras | keras/layers/regularization/gaussian_noise.py | Python | apache-2.0 | 2,794 | [
"Gaussian"
] | 2bae627fc9c637fb8f369a7b5845eb3a5bba33afcf4b8e3444657e7e64a75763 |
from __future__ import print_function
import httplib2
try:
from HTMLParser import HTMLParser
except ImportError:
from html.parser import HTMLParser
import urllib
import warnings
class SearchResultHTMLParser(HTMLParser):
def __init__(self):
HTMLParser.__init__(self)
self.molids = {}
... | summeraz/mbuild | mbuild/atb_client.py | Python | mit | 3,030 | [
"Gromacs"
] | 7b57ef4eb1f7f9047417601e90ed505c0f4b2c02a58924d29be596c93560ae13 |
#!/usr/bin/env python
# @package nc2cdo
# \author Andy Aschwanden, University of Alaska Fairbanks, USA
# \brief Script makes netCDF file ready for Climate Data Operators (CDO).
# \details Script adds attributes and variables to a netCDF which are required for
# post-processing with <a href="http://www.mad.zmaw.de/Ping... | talbrecht/pism_pik | util/nc2cdo.py | Python | gpl-3.0 | 10,206 | [
"NetCDF"
] | f71288ff1e3086a898fa1843d301519260df44f6f1ea4aee7f2908cbb1d815f8 |
import collections
import glob
import os
import platform
import re
import subprocess
import sys
from itertools import chain
import coverage
import py
import pytest
import virtualenv
import xdist
from fields import Namespace
from process_tests import TestProcess as _TestProcess
from process_tests import dump_on_error
f... | schlamar/pytest-cov | tests/test_pytest_cov.py | Python | mit | 63,079 | [
"VisIt"
] | 93ae04b167a474cc0dd5c2f03231e55eb34286ac40967be3a0865c94f5d8ab81 |
# Copyright (C) 2019-2020
# Max Planck Institute for Polymer Research & JGU Mainz
# Copyright (C) 2012,2013,2015,2016
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ... | espressopp/espressopp | src/vectorization/VerletList.py | Python | gpl-3.0 | 4,637 | [
"ESPResSo"
] | 2a79074582f06a95068a71d6980a4019a9c7680840e52e03f2e0009507693726 |
#ImportModules
import ShareYourSystem as SYS
import operator
#Definition
MyBrianer=SYS.BrianerClass(
).produce(
"Neurongroupers",
['E','I'],
SYS.NeurongrouperClass,
#Here are defined the brian classic shared arguments for each pop
{
'NeurongroupingKwargVariablesDict':
{
'model':
'''
dv/dt... | Ledoux/ShareYourSystem | Pythonlogy/ShareYourSystem/Specials/Diffusers/Diffuser/01_ExampleDoc.py | Python | mit | 2,420 | [
"Brian"
] | 461a4d7c2511b9d2d8593f6a9715a0e06d41f6d7bb5f45ef9d0c312730d6e44f |
#! /bin/python
# $Id
# -----------------------------------------------------------------------------
# CppAD: C++ Algorithmic Differentiation: Copyright (C) 2003-17 Bradley M. Bell
#
# CppAD is distributed under multiple licenses. This distribution is under
# the terms of the
# Eclipse Public Licens... | kaskr/CppAD | bin/push_git2svn.py | Python | epl-1.0 | 10,379 | [
"VisIt"
] | df7682d49c8f3470c3d08c273c6c761f575c677d9b9931fea77f14df1c1efc20 |
import vtk
import requests
# to support alternative baseURL
import os
import os.path
def add_arguments(parser):
parser.add_argument("--tree1", help="URI to serialized vtkTree", dest="tree1URI")
parser.add_argument("--tree2", help="URI to serialized vtkTree", dest="tree2URI")
parser.add_argument("--table",... | lukejharmon/tangelohub | app/vtk_tanglegram.py | Python | apache-2.0 | 4,171 | [
"VTK"
] | 9fca62e44be08183686d1dd74e3a523c85fbff6520206ab495426d3fc4637983 |
""" X509CRL is a class for managing X509CRL
This class is used to manage the revoked certificates....
"""
import stat
import os
import tempfile
import re
import datetime
import M2Crypto
from DIRAC import S_OK, S_ERROR
from DIRAC.Core.Utilities import DErrno
# pylint: disable=broad-except
class X509CRL(object):
... | DIRACGrid/DIRAC | src/DIRAC/Core/Security/m2crypto/X509CRL.py | Python | gpl-3.0 | 3,666 | [
"DIRAC"
] | 8e117ffe7af2c2b6781237f5f427ea29c757cebdff692d4c803e696ed1b8c111 |
#!/usr/bin/env python
"""
Stop a given production
"""
__RCSID__ = "$Id$"
import DIRAC
from DIRAC.Core.Base import Script
Script.setUsageMessage('\n'.join([__doc__.split('\n')[1],
'Usage:',
' %s prodID' % Script.scriptName,
... | fstagni/DIRAC | ProductionSystem/scripts/dirac-prod-stop.py | Python | gpl-3.0 | 908 | [
"DIRAC"
] | 3d329dfb5f69610d7cc51ff530567b53497aad1fe7b71346fbf6b8d975098d56 |
import numpy as np
from scipy import optimize, fftpack, signal
from astroML.utils.decorators import deprecated
from astroML.utils.exceptions import AstroMLDeprecationWarning
# Note: there is a scipy PR to include an improved SG filter within the
# scipy.signal submodule. It should replace this when it's finished.
#... | astroML/astroML | astroML/filters.py | Python | bsd-2-clause | 10,100 | [
"Gaussian"
] | a38cd9fb4d2d5a7c656f1784e523816c47063b5e9d42c5a65f1458c69f1c196f |
# Copyright 2015 Google Inc. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or a... | wchan/tensorflow | tensorflow/python/ops/gradients.py | Python | apache-2.0 | 28,294 | [
"VisIt"
] | 7d59a2d0c64ba134abf85a340aef0df4c121e6c43e83da68b57f2f5bfa9e3305 |
# -*- coding: utf-8 -*-
r"""
This example is a complete study of a crystal analyzer. The generator
``plot_generator()`` is rather complex and therefore needs some explanation.
The inner loop changes the source type. After a flat-energy source has been
ray-traced (after ``yield``), the widths of *z* and energy distribu... | kklmn/xrt | examples/withRaycing/06_AnalyzerBent1D/01B_SourceZCrystalThetaAlpha.py | Python | mit | 21,475 | [
"CRYSTAL"
] | 200748f28075d25b1259bbb840aff5ff2fe06abd459554b7372db9215f850398 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
import numpy as np
import collections
from numbers import Number
import numbers
from functools import partial
import scipy.constants as const
"""
This module implements a FloatWithUnit, which is a subclass o... | dongsenfo/pymatgen | pymatgen/core/units.py | Python | mit | 27,870 | [
"pymatgen"
] | 47cb23e954232acc53da3424a610e0e3c2535d8b26d125e81ef444c4ba8c1283 |
# $Id$
#
# Copyright (C) 2004-2008 Greg Landrum and Rational Discovery LLC
#
# @@ All Rights Reserved @@
# This file is part of the RDKit.
# The contents are covered by the terms of the BSD license
# which is included in the file license.txt, found at the root
# of the RDKit source tree.
#
from rdkit import Geome... | jandom/rdkit | rdkit/Chem/Pharm3D/Pharmacophore.py | Python | bsd-3-clause | 6,085 | [
"RDKit"
] | 7460635b9dbab8db687aca6b92a74efe3478a0e8515271842a96ff5f2931f809 |
import urllib,urllib2,re,cookielib,string, urlparse,sys,os
import xbmc, xbmcgui, xbmcaddon, xbmcplugin,urlresolver
from t0mm0.common.net import Net as net
from t0mm0.common.addon import Addon
from resources.libs import main
from decimal import Decimal
import time
#Mash Up - by Mash2k3 2012.
from t0mm0.common.addon im... | noba3/KoTos | addons/plugin.video.movie25/resources/libs/plugins/sominaltvfilms.py | Python | gpl-2.0 | 15,940 | [
"ADF"
] | 05f9ddbf7b0d1b2c2c0b6c30233a0581f98f4f6a86cc488db61823f7dbeb5a16 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""Copyright (C) 2012 Computational Neuroscience Group, NMBU.
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at you... | espenhgn/LFPy | LFPy/test/test_eegmegcalc.py | Python | gpl-3.0 | 33,112 | [
"NEURON"
] | 21b538db5f16d87665c4cf4ccef4d61338e2fdbb09e403821493aab550e256c0 |
from __future__ import print_function, division, unicode_literals
import os
import yaml
from pymatgen.io.vasp.inputs import Kpoints, Incar
from pymatgen.io.vasp.outputs import Vasprun
import twod_materials.utils as utl
from pymatgen.matproj.rest import MPRester
from monty.serialization import loadfn
import twod_ma... | ashtonmv/twod_materials | twod_materials/pourbaix/startup.py | Python | gpl-3.0 | 9,663 | [
"VASP",
"pymatgen"
] | 06a960c82237454d587c8b3573c3747efaf7787fd0174ea3a76394c441ae4a98 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
# (c) 2018, Chris Houseknecht <@chouseknecht>
# GNU General Public License v3.0+ (see COPYING or https://www.gnu.org/licenses/gpl-3.0.txt)
from __future__ import absolute_import, division, print_function
__metaclass__ = type
ANSIBLE_METADATA = {'metadata_version': '1.1',
... | rosmo/ansible | lib/ansible/modules/clustering/k8s/k8s.py | Python | gpl-3.0 | 8,781 | [
"Galaxy"
] | cf085dbf96e5683c41744755a8d9fbc0678467d867be9fed7551d1a84f20843b |
try: paraview.simple
except: from paraview.simple import *
import numpy as np
from mpi4py import MPI
import os
import csv
from scipy import interpolate
import gc
import sys
gc.enable()
comm = MPI.COMM_WORLD
label = 'm_25_3b'
labelo = 'm_25_3b'
basename = 'mli'
## READ archive (too many points... somehow)
# args: n... | jungla/ICOM-fluidity-toolbox | 2D/RST/extract_Scalar.py | Python | gpl-2.0 | 3,291 | [
"ParaView"
] | 622c0936e77edd2a446a84c19cfe26df792a78fa7bf04c467312dd45841c8a88 |
""" Plotting Service generates graphs according to the client specifications
and data
"""
__RCSID__ = "$Id$"
import os
import hashlib
from DIRAC import S_OK, S_ERROR, rootPath, gConfig, gLogger
from DIRAC.FrameworkSystem.Client.MonitoringClient import gMonitor
from DIRAC.ConfigurationSystem.Client import PathFin... | fstagni/DIRAC | FrameworkSystem/Service/PlottingHandler.py | Python | gpl-3.0 | 2,384 | [
"DIRAC"
] | ff23f1b88082c71df435c76635670b03862f013044f0b74040353b882a2e6ba4 |
#!/usr/bin/env python
"""
Network of always spiking neurons (in each timestep).
No synaptic connections between neurons exist.
"""
import matplotlib
matplotlib.use('Agg')
from brian2 import *
import brian2cuda
plotit = False
monitor = True
duration = 1*ms
N = 10000 # number of neurons
mode = 'cuda'
#mode = 'cpp'
Br... | brian-team/brian2cuda | dev/issues/issue9_spikespace/shared_atomicAdds_CC35/always_spiking_neurons.py | Python | gpl-2.0 | 800 | [
"NEURON"
] | cc9f3ed282015b6e4400553c98604d12fa16ef5492d861c9a5b1416480125cb9 |
# Orca
#
# Copyright 2010-2011 Consorcio Fernando de los Rios.
# Author: Juanje Ojeda Croissier <jojeda@emergya.es>
# Author: Javier Hernandez Antunez <jhernandez@emergya.es>
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as publi... | Alberto-Beralix/Beralix | i386-squashfs-root/usr/share/pyshared/orca/backends/json_backend.py | Python | gpl-3.0 | 6,355 | [
"ORCA"
] | c494e99821740582c7dae9281d4b5fb8d1332b0351cbf3ca765d25075413c084 |
# (c) 2014 Michael DeHaan, <michael@ansible.com>
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later ve... | wulczer/ansible | v2/ansible/playbook/role/metadata.py | Python | gpl-3.0 | 2,487 | [
"Galaxy"
] | 56beb91ddd03e1bb80ecfc8e51fa3ddd755079ed72d5d91529a552e7b4e39fd8 |
#!/usr/bin/env python
import os
try:
__IPYTHON__
import sys
del sys.argv[1:]
except:
pass
import srwl_bl
import srwlib
import srwlpy
import srwl_uti_smp
def set_optics(v=None):
el = []
pp = []
names = ['Lens', 'Lens_CRL', 'CRL', 'CRL_Zone_Plate', 'Zone_Plate', 'Zone_Plate_Fiber', 'Fiber'... | mrakitin/sirepo | tests/template/srw_generate_data/srw-all-optics.py | Python | apache-2.0 | 62,098 | [
"CRYSTAL",
"Gaussian"
] | 92f40e79605809d1b96519ab8c595df3c46663e9b0ef4ba7028e43c13c50e53a |
# -*- coding: utf-8 -*-
# EditXT
# Copyright 2007-2013 Daniel Miller <millerdev@gmail.com>
#
# This file is part of EditXT, a programmer's text editor for Mac OS X,
# which can be found at http://editxt.org/.
#
# EditXT is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Publ... | editxt/editxt | editxt/test/test_textcommand.py | Python | gpl-3.0 | 33,334 | [
"Amber"
] | 1ef176393bb252e244db20d3288fe2e365fe5bd894a8d7c655eaa795e6f1256e |
# Copyright (c) 2018, Henrique Miranda
# All rights reserved.
#
# This file is part of the yambopy project
#
import os
import numpy as np
from itertools import product
from netCDF4 import Dataset
from yambopy.plot.plotting import add_fig_kwargs
from yambopy.plot import *
from yambopy.tools.string import marquee
from ya... | alexmoratalla/yambopy | yambopy/dbs/savedb.py | Python | bsd-3-clause | 17,431 | [
"DIRAC",
"Yambo"
] | 050ce7103747596392c780b61dd00d941f93e154347b0167ba96f123707d3c07 |
#! /usr/bin/env python
# -*- coding: utf-8 -*-
#
# Python motu client
#
# Motu, a high efficient, robust and Standard compliant Web Server for
# Geographic Data Dissemination.
#
# http://cls-motu.sourceforge.net/
#
# (C) Copyright 2009-2010, by CLS (Collecte Localisation Satellites) -
# http://www.cls.fr - and Contr... | quiet-oceans/motuclient-setuptools | scripts/motu-client.py | Python | lgpl-3.0 | 12,901 | [
"NetCDF"
] | 32cc91796edb8e1f9cccac7f6a7c2e58c2d96e01a615ba59d3c24d35e2966007 |
import numpy as np
from cs231n.layers import *
from cs231n.layer_utils import *
class TwoLayerNet(object):
"""
A two-layer fully-connected neural network with ReLU nonlinearity and
softmax loss that uses a modular layer design. We assume an input dimension
of D, a hidden dimension of H, and perform classific... | asydorchuk/ml | classes/cs231n/assignment2/cs231n/classifiers/fc_net.py | Python | mit | 15,303 | [
"Gaussian"
] | aa9957868a2c303eb4d5e0668fdb165f64ff6c9d90548984b61cdbe23014ebdc |
# Abstract data type that stores the contraints. Contains alls
# methods for accessing these constraints.
import random as rdm
import operator
class lADT:
def __init__(self):
self.limit = []
# Adds the given limit and validity pair
def add(self, limit, valid = [0,float('infinity')]):
self.limit += [[valid,li... | scottbarton/MPR-lab | Student Composition Projects/CSP_Composer_V2/constraintsADT.py | Python | gpl-3.0 | 7,626 | [
"Gaussian"
] | fdd35a46a390cdd6037eb1ea89037f00ca9779ef23614bb8adb66b5adeed12a2 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
from __future__ import division, print_function, unicode_literals
from __future__ import absolute_import
from pymatgen.analysis.elasticity.tensors import Tensor, \
TensorCollection, get_uvec
from pymatgen.... | gpetretto/pymatgen | pymatgen/analysis/elasticity/elastic.py | Python | mit | 39,130 | [
"VASP",
"pymatgen"
] | aee547cbfd1e284ddc845bd46888d3aa0435d333cc5a01851e528826c5f17113 |
"""Gaussian processes regression."""
# Authors: Jan Hendrik Metzen <jhm@informatik.uni-bremen.de>
# Modified by: Pete Green <p.l.green@liverpool.ac.uk>
# License: BSD 3 clause
import warnings
from operator import itemgetter
import numpy as np
from scipy.linalg import cholesky, cho_solve, solve_triangular
import scip... | ndingwall/scikit-learn | sklearn/gaussian_process/_gpr.py | Python | bsd-3-clause | 22,453 | [
"Gaussian"
] | f1e7661b0fc1ba84b03f60eb4680051c7ae8a179c5d1735241a7acf0517fea84 |
# -*- coding: utf-8 -*-
import copy
import json
import mock
import os
from django.conf import settings
from django.core import mail
import pytest
from waffle.testutils import override_switch
from olympia import amo
from olympia.access.models import Group, GroupUser
from olympia.amo.templatetags.jinja_helpers import ... | tsl143/addons-server | src/olympia/activity/tests/test_utils.py | Python | bsd-3-clause | 24,183 | [
"VisIt"
] | 99028988719532c9a33169d56159275400ac64d1e9c9de548850096fde862ac2 |
# coding=utf-8
"""RADIANCE rcontrib command."""
from _commandbase import RadianceCommand
from ..datatype import RadiancePath
from ..parameters.rcontrib import RcontribParameters
import os
class Rcontrib(RadianceCommand):
u"""
rcontrib - Compute contribution coefficients in a RADIANCE scene.
Read more at... | antonszilasi/honeybeex | honeybeex/honeybee/radiance/command/rcontrib.py | Python | gpl-3.0 | 3,764 | [
"EPW"
] | eeb68ee41fca2cb7ccc0a9d96e6880b98db840ae96c883b2ad22857d59a60ea2 |
import logging
import re
import os
import signal
from avocado.utils import path
from avocado.utils import process
from avocado.utils import linux_modules
from .compat_52lts import results_stdout_52lts
from .versionable_class import VersionableClass, Manager, factory
from . import utils_misc
# Register to class mana... | balamuruhans/avocado-vt | virttest/openvswitch.py | Python | gpl-2.0 | 18,462 | [
"ASE"
] | 8e6a2b01bb0f430984b9951c8f44703d5d0b65ded45be34973ad1e902f46952f |
#coding:utf-8
# Author: mozman
# Purpose: svg container classes
# Created: 15.09.2010
# Copyright (C) 2010, Manfred Moitzi
# License: GPLv3
"""
The **container** module provides following structural objects:
* :class:`svgwrite.Group`
* :class:`svgwrite.SVG`
* :class:`svgwrite.Defs`
* :class:`svgwrite.Symb... | hirobert/svgwrite | svgwrite/container.py | Python | gpl-3.0 | 8,993 | [
"VisIt"
] | 6f5e3a52d24e57dc56a68b93c1b375f063ab1afaa46b9016032be7dc36c9a298 |
# -*- coding: utf-8 -*-
from __future__ import unicode_literals
from django.conf import settings
from django.conf.urls import include, url
from django.conf.urls.static import static
from django.contrib import admin
from django.views.generic import TemplateView
from django.views import defaults as default_views
from re... | ojousima/asylum | project/config/urls.py | Python | mit | 2,491 | [
"VisIt"
] | 46b8057c612ec378c5fd75d2aa056743ea320be17040b64dcccd3c60dca86acc |
# -*- coding: utf-8 -*-
# (c) 2015, Brian Coca <briancoca+dev@gmail.com>
# (c) 2018, Matt Martz <matt@sivel.net>
# GNU General Public License v3.0+ (see COPYING or https://www.gnu.org/licenses/gpl-3.0.txt)
# Make coding more python3-ish
from __future__ import (absolute_import, division, print_function)
__metaclass__... | ansible/ansible | lib/ansible/plugins/action/uri.py | Python | gpl-3.0 | 4,094 | [
"Brian"
] | 1c5429dd8b94cece5493b5038535f31d9aa3fbd4c8c49fb0ed5435907778aa19 |
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import os
import os.path
import copy
import spack.util.environment
class Cp2k(MakefilePackage, CudaPackage):
"""CP2... | iulian787/spack | var/spack/repos/builtin/packages/cp2k/package.py | Python | lgpl-2.1 | 23,223 | [
"CP2K",
"CRYSTAL",
"Wannier90"
] | 3d6fc853d10e9da9207e90bb1801ee3fc11512bd58085cfa74eb473f0d24cef6 |
#!/usr/bin/python
#
# This source file is part of appleseed.
# Visit https://appleseedhq.net/ for additional information and resources.
#
# This software is released under the MIT license.
#
# Copyright (c) 2014-2018 Francois Beaune, The appleseedhq Organization
#
# Permission is hereby granted, free of charge, to any... | luisbarrancos/appleseed | scripts/runtestsuite/runtestsuite.py | Python | mit | 26,516 | [
"VisIt"
] | e5c8713cdea0ececba369d391f2c7b6db6adb933c696bba5f747017cf22689b7 |
#!/usr/bin/env python
import os
import sys
sys.path.append(os.getcwd())
import abinitio_driver as driver
from abinitio_driver import AUtoEV
import scipy.optimize as opt
from scipy.interpolate import interp1d
try:
import matplotlib
matplotlib.use('Agg')
import matplotlib.pyplot as plt
except:
pass
# This i... | PHOTOX/photoxrepo | MISC/opt_omega_ip.py | Python | mit | 8,797 | [
"TeraChem"
] | 59033a63f6eff0e4f11bf94e9de991a08fdfc83993986f8b6d24078e225760d2 |
__author__ = 'Chaya D. Stern'
from pymol import stored, cmd
import os
import errno
def torsion_drive(atom1, atom2, atom3, atom4, interval, selection, path, mol_name,):
"""
This function generates input pdbs of dihedral angles selected of intervals specified with interval
:param atom1: name of atom 1 of d... | choderalab/Torsions | torsionfit/qmscan/generate_dihedral.py | Python | gpl-2.0 | 1,411 | [
"PyMOL"
] | 53367589e2badfe81752804212a042ed4dd449e5b6e856584af865781fb422e1 |
##
# Copyright 2009-2017 Ghent University
# Copyright 2015-2017 Stanford University
#
# This file is part of EasyBuild,
# originally created by the HPC team of Ghent University (http://ugent.be/hpc/en),
# with support of Ghent University (http://ugent.be/hpc),
# the Flemish Supercomputer Centre (VSC) (https://vscentrum... | ULHPC/easybuild-easyblocks | easybuild/easyblocks/a/amber.py | Python | gpl-2.0 | 8,904 | [
"Amber",
"NetCDF"
] | 93b3f4799edc3d6dc8ed4d63734d07ada5803552d6dadafc583f9d0c40fe9745 |
# Copyright 2018 The TensorFlow Authors All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicab... | tombstone/models | research/deep_contextual_bandits/bandits/algorithms/parameter_noise_sampling.py | Python | apache-2.0 | 6,687 | [
"Gaussian"
] | 38545d92e4d5cc7906829d8b896b0071cfe150ff07e9ae0ee892d80c0a4c912a |
#!/usr/bin/env python
# vim: set fileencoding=utf-8 :
# @author: Elie Khoury <Elie.Khoury@idiap.ch>
# Sat Aug 31 16:39:23 CEST 2013
#
# Copyright (C) 2012-2013 Idiap Research Institute, Martigny, Switzerland
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General... | antoniorohit/xbob.spkrec | setup.py | Python | gpl-3.0 | 2,972 | [
"Gaussian"
] | 4121f56be47cc113e5e2ca70945239551af82a63f2b93cc6f157ecf00851bcda |
from __future__ import print_function, division
from sympy.core.basic import C
from sympy.core.singleton import S
from sympy.core.function import Function
from sympy.core import Add
from sympy.core.evalf import get_integer_part, PrecisionExhausted
######################################################################... | ojengwa/sympy | sympy/functions/elementary/integers.py | Python | bsd-3-clause | 5,096 | [
"VisIt"
] | a2f0901c71b9c3febbef1c1fa82c40f2caf3e2b0404b6de65ff83e21b678e785 |
#!/usr/bin/env python
from sys import argv, exit
from getopt import getopt, GetoptError
from numpy import squeeze
try:
from netCDF4 import Dataset as NC
except:
from netCDF3 import Dataset as NC
usage="""
THKMASK.PY Uses ice thickness 'thk' in one NetCDF file to mask-out ice-free areas
in identified variable... | JohannesFeldmann/pism | examples/old/pddtune/thkmask.py | Python | gpl-2.0 | 2,556 | [
"NetCDF"
] | 6c8776d67a95af05373397ecc3a0bb7d9e1a30bf77b377f866a3211840815d7f |
# Copyright 2012-2013 Dusty Phillips
# This file is part of gitifyhg.
# gitifyhg is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# ... | buchuki/gitifyhg | gitifyhg/gitexporter.py | Python | gpl-3.0 | 11,481 | [
"Octopus"
] | a13ace3c41ac9ff6e5609989413e4598c85e7729f5e8585c20032bfe0126acd6 |
#!/usr/bin/env python
"""
Fun with the Schrodinger equation!
A solution to the 2D Schrodinger equation is evolved in time given some
initial condition and a potential function. The hamiltonian used is that of
the quantum particle with dissipation, H = alph*del^2 + V(r,t) + j*hbar*B(r,t).
The wave function solution F ... | jnez71/demos | physics/quantum/schrodinger2d.py | Python | mit | 3,998 | [
"Gaussian"
] | 21ddc8992391b92cf0cd9af5e7e7eda8f8c08d4eb8b01ca30592394501928287 |
#!/usr/bin/env python
'''
@name: fitModel.py
@author: Juan C. Castro <jccastrog at gatech dot edu> & William T. Harvey <wharvey31@gatech.edu>
@update: 13-Ago-2018
@version: 1.1.2
@license: GNU General Public License v3.0.
please type "./fitModel.py -h" for usage help
'''
'''1.0 Import modules, define functions, and in... | jccastrog/imGLAD | fitModel.py | Python | gpl-3.0 | 18,961 | [
"BLAST",
"Biopython"
] | 63aa30dab2d575253d492b8c0e0bded428ec7f55f503dfd38b2df4daca34f3a6 |
from build.management.commands.base_build import Command as BaseBuild
from build.management.commands.build_homology_models_zip import Command as UploadModel
from django.db.models import Q
from django.conf import settings
from protein.models import Protein, ProteinConformation, ProteinAnomaly, ProteinState, ProteinSegm... | protwis/protwis | build/management/commands/build_homology_models.py | Python | apache-2.0 | 272,925 | [
"CRYSTAL",
"Gaussian"
] | 159f8e63920f94b56df7daba812cda1dd6107e0fd40856af8480969bbd2f23ec |
# Scheduling and web server and all sorts of fancy things!
from configparser import ConfigParser
import web.serv
import schedule
import time
import six
import main
import handlers
import os
import threading
import eink
import pluginloader
global headlightsjob
global configfile
def start():
global headlightsjob
... | mashedkeyboard/Headlights | headlights.py | Python | gpl-3.0 | 3,622 | [
"VisIt"
] | 92a389bdae80631d6a5a2b9872670639f83e92155564a0b0a8f146af8aec79ce |
#/usr/bin/env python
from __future__ import print_function
import vtk
import math
from icqsol.shapes.icqShapeManager import ShapeManager
from icqsol import util
# Create structured grid and save grid in VTK file
nLon, nLat = 16, 8
nLon1, nLat1 = nLon + 1, nLat + 1
structuredGrid = vtk.vtkStructuredGrid()
points = vtk... | gregvonkuster/icqsol | tests/testStructuredGridRead.py | Python | mit | 1,194 | [
"VTK"
] | 003570e133ae5358fa0dc46572dca9a1266069ae2e52d4b95ffa04407096c199 |
# pylint: disable=C0111
# pylint: disable=W0621
from lettuce import world, step
from lettuce.django import django_url
@step('I visit the courseware URL$')
def i_visit_the_course_info_url(step):
url = django_url('/courses/MITx/6.002x/2012_Fall/courseware')
world.browser.visit(url)
| jruiperezv/ANALYSE | lms/djangoapps/courseware/features/courseware.py | Python | agpl-3.0 | 292 | [
"VisIt"
] | 86a16d532de4b1715beb5985688607b041b366a8c88dd3f6259e60d5b536dd64 |
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
import os
import unittest
import numpy as np
try:
import openbabel as ob
from pymatgen.analysis.molecule_matcher import (
InchiMolAtomMapper,
IsomorphismMolAtomMapper,
MoleculeMatcher,
)
... | materialsproject/pymatgen | pymatgen/analysis/tests/test_molecule_matcher.py | Python | mit | 31,440 | [
"pymatgen"
] | e150ac6c1393fdb4c97496fff746215a54619e92fe3106be67faf8a5525b0361 |
# Copyright 2008-2015 Nokia Solutions and Networks
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable l... | caio2k/RIDE | src/robotide/lib/robot/model/statistics.py | Python | apache-2.0 | 2,605 | [
"VisIt"
] | 9fc65292e0ae46a5db3aa26a72b11118aa69ea65c8088e1eece2dd9ad305bc44 |
import orca.scripts.default as default
import orca.orca_state as orca_state
from .script_utilities import Utilities
class Script(default.Script):
def __init__(self, app):
"""Creates a new script for the given application.
Arguments:
- app: the application to create a script for.
... | ruibarreira/linuxtrail | usr/lib/python3/dist-packages/orca/scripts/apps/Banshee/script.py | Python | gpl-3.0 | 1,077 | [
"ORCA"
] | ff02e28eee6b09ee461e12fb041e57dc3f496528dda089e4bc25776f2224b6a6 |
"""
path_engine.py contains logic for matching up GTFS paths to VISTA paths and the
writing and reading of them.
@author: Kenneth Perrine
@contact: kperrine@utexas.edu
@organization: Network Modeling Center, Center for Transportation Research,
Cockrell School of Engineering, The University of Texas at Austin
@... | ut-ctr-nmc/nmc-map-matcher | nmc_mm_lib/path_engine.py | Python | gpl-3.0 | 39,409 | [
"VisIt"
] | f80de6728e5f795a2d649551456defb0af6b9030e9632c12f41499d1786284e2 |
# -*- coding: utf-8 -*-
# vim: autoindent shiftwidth=4 expandtab textwidth=120 tabstop=4 softtabstop=4
###############################################################################
# OpenLP - Open Source Lyrics Projection #
# ------------------------------------------------------... | marmyshev/item_title | openlp/plugins/media/lib/mediaitem.py | Python | gpl-2.0 | 15,454 | [
"Brian"
] | a413f17a5be020c093aea0e629f33bb6c1f0c2e1b819289f062f152f121339f0 |
# Copyright 2019 The Chromium Authors. All rights reserved.
# Use of this source code is governed by a BSD-style license that can be
# found in the LICENSE file.
"""XCode test log parser."""
import json
import logging
import os
import plistlib
import re
import shutil
import subprocess
import sys
import file_util
fro... | ric2b/Vivaldi-browser | chromium/ios/build/bots/scripts/xcode_log_parser.py | Python | bsd-3-clause | 27,189 | [
"ASE"
] | a214b3642b88f7849d2fab5476c5b92a8d8a16d822da6d2bc881c0dc8353a303 |
# -*- coding: utf-8 -*-
from __future__ import division
from __future__ import print_function
from __future__ import unicode_literals
import numpy as np
import abel
import matplotlib.pylab as plt
# This example demonstrates ``linbasex`` inverse Abel transform
# of a velocity-map image of photoelectrons from O2- phot... | rth/PyAbel | examples/example_linbasex.py | Python | mit | 3,213 | [
"Gaussian"
] | c58ed5569cc524fd399c1eb533afc40e8c4fbd36a27d8f4a9e7d44e74bf1de6b |
#!/usr/bin/env python
"""
Create a new DB on the local MySQL server
"""
# Script initialization and parseCommandLine
from DIRAC.Core.Base import Script
Script.setUsageMessage( '\n'.join( [ __doc__.split( '\n' )[1],
'Usage:',
' %s [option|cfgFile... | andresailer/DIRAC | Core/scripts/dirac-install-db.py | Python | gpl-3.0 | 1,428 | [
"DIRAC"
] | fe603b1792318b856d8b261c794d214589665a20cd570d2a0089971e51efebd3 |
#===============================================================================
# LICENSE XOT-Framework - CC BY-NC-ND
#===============================================================================
# This work is licenced under the Creative Commons
# Attribution-Non-Commercial-No Derivative Works 3.0 Unported Lic... | SMALLplayer/smallplayer-image-creator | storage/.xbmc/addons/net.rieter.xot.smallplayer/resources/libs/logger.py | Python | gpl-2.0 | 24,719 | [
"VisIt"
] | 1eb7f5a817a10bcb36840c1ce00efdf41895d84789a17e0ad0ef39daf99acafd |
#!/usr/bin/env python
import argparse
import eutils
if __name__ == '__main__':
parser = argparse.ArgumentParser(description='ECitMatch', epilog='')
parser.add_argument('--file', type=argparse.FileType('r'), help='Tabular file containing citations to search')
parser.add_argument('--key', nargs='*', help... | galaxyproject/tools-iuc | tools/ncbi_entrez_eutils/ecitmatch.py | Python | mit | 2,352 | [
"Biopython"
] | c72f273b348627b6ffedfac8a01dbda1aaf694ede0689680d2e7a264a82cac4f |
#!/usr/bin/env python
# CreateInstanceFabric.py
#
# This class was intended to demonstrate an exercise using the Python AWS SDK
# (boto), however it will probably be extended to do much more over time,
# especially as I continue to test additional infrastructure.
#
# This class (CreateInstance) has some wrapper funct... | briantyr/auto-deploy | CreateInstanceFabric.py | Python | mit | 12,262 | [
"Brian"
] | 9f014d824b100322e7ceafcf2918de384d430c2002ea1977170dfdd845808858 |
# Python example script that uses the Matlab Engine filter to compute the
# degree centraility for an input graph and display the result.
# VTK must be built with VTK_USE_MATLAB_MEX turned on for this example to work!
from vtk import *
if __name__ == "__main__":
# Generate a random graph with 20 vertices and... | b3c/VTK-5.8 | Examples/Infovis/Python/Matlab_engine_filter.py | Python | bsd-3-clause | 2,132 | [
"VTK"
] | 75a2ae5982dbd9a3fc477a741049a067e13ef383ad1f723bf86030ea47ae0267 |
# Version: 0.18
"""The Versioneer - like a rocketeer, but for versions.
The Versioneer
==============
* like a rocketeer, but for versions!
* https://github.com/warner/python-versioneer
* Brian Warner
* License: Public Domain
* Compatible With: python2.6, 2.7, 3.2, 3.3, 3.4, 3.5, 3.6, and pypy
* [![Latest Version][py... | intelligent-agent/redeem | versioneer.py | Python | gpl-3.0 | 70,396 | [
"Brian"
] | 0e056d0986edc2cdca243d0a790d6cbad4ab4cc0aae39b71be2ad91ae9084fd2 |
"""
Typeclasses for the in-game Python system.
To use thm, one should inherit from these classes (EventObject,
EventRoom, EventCharacter and EventExit).
"""
from evennia import DefaultCharacter, DefaultExit, DefaultObject, DefaultRoom
from evennia import ScriptDB
from evennia.utils.utils import delay, inherits_from,... | feend78/evennia | evennia/contrib/ingame_python/typeclasses.py | Python | bsd-3-clause | 34,071 | [
"VisIt"
] | 88398fafc7d4b250afebf50d656e141e59e1c9c1f5c3ba8217b33ddf3a78678c |
# -*- coding: utf-8 -*-
# Form implementation generated from reading ui file 'AboutSensei.ui'
#
# Created by: PyQt5 UI code generator 5.7.1
#
# WARNING! All changes made in this file will be lost!
from PyQt5 import QtCore, QtGui, QtWidgets
class Ui_AboutWindow(object):
def setupUi(self, AboutWindow):
Ab... | JustinShenk/sensei | aboutGUI.py | Python | mit | 3,717 | [
"VisIt"
] | ad9f2486931635688d496a57f90fa5a72bc9356030df288505be580603c19f91 |
### clustering.py
#Copyright 2005-2008 J. David Gladstone Institutes, San Francisco California
#Author Nathan Salomonis - nsalomonis@gmail.com
#Permission is hereby granted, free of charge, to any person obtaining a copy
#of this software and associated documentation files (the "Software"), to deal
#in the Software ... | kdaily/altanalyze | clustering.py | Python | apache-2.0 | 186,834 | [
"Bioconductor"
] | ad943d902481335673efa643eece74b9d61e9975bd0cd3857c8aba5c3d7e19a0 |
from __future__ import absolute_import
# coding=utf-8
from flask.views import MethodView
from flask.blueprints import Blueprint
from flask_mako import render_template
from firefly.models.topic import Category, Post
bp = Blueprint("category", __name__, url_prefix="/category")
class CategoryView(MethodView):
de... | mozillazg/firefly | firefly/views/category.py | Python | mit | 734 | [
"Firefly"
] | 3e971eaf23490148a7284189988fab0131b676d6c8feefd291f74a3b3d0256b6 |
# -*- coding: utf-8 -*-
#
# Copyright (c) 2017, the cclib development team
#
# This file is part of cclib (http://cclib.github.io) and is distributed under
# the terms of the BSD 3-Clause License.
from __future__ import print_function
import sys
class TextProgress:
def __init__(self):
self.nstep = 0
... | gaursagar/cclib | src/cclib/progress/textprogress.py | Python | bsd-3-clause | 1,345 | [
"cclib"
] | 108c2c0df11c95c5e8442ddf58c0b0540419dae08f4b5ca089c4e0bebbe0d289 |
# -*- coding: utf-8 -*-
#
# Copyright 2008 - 2013 Brian R. D'Urso
#
# This file is part of Python Instrument Control System, also known as Pythics.
#
# Pythics is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundati... | LunarLanding/Pythics | pythics/__init__.py | Python | gpl-3.0 | 802 | [
"Brian"
] | c708e567ae98ca6877e404fcf5ca43e2f1fa390f716b63d5852e50f16690f2c3 |
import os
import stat
import tmd.pwscf.config
from tmd.queue.queue_util import global_config, _base_dir
def write_queuefile(config):
machine = config["machine"]
gconf = global_config()
if machine == "__local__":
if gconf['allow_local']:
_write_queuefile_local(config)
else:
... | tflovorn/tmd | tmd/queue/queuefile.py | Python | mit | 9,060 | [
"Wannier90"
] | 555d7b668b7fdcf9ee37b0f8a3b162cf7a6b10be336828d097742825d7d09b18 |
# import defusedxml before anything else
import defusedxml
import defusedxml.xmlrpc
defusedxml.xmlrpc.monkey_patch()
# system imports
import sys, os, urllib, cStringIO, traceback, cgi, binascii, gzip
import time, random, smtplib, base64, email, types, urlparse
import re, zipfile, logging, shutil, Cookie, subprocess, h... | pydotorg/pypi | webui.py | Python | bsd-3-clause | 151,562 | [
"VisIt"
] | f7472f0ebd9721992c557b82e5ce7533f02665cb20b97da0d43b0404e1ccc873 |
"""
Copyright (C) 2004-2015 Pivotal Software, Inc. All rights reserved.
This program and the accompanying materials are made available under
the terms of the under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
... | xuegang/gpdb | src/test/tinc/tincrepo/mpp/gpdb/lib/models/sql/template/test/test_sql_template_test_case.py | Python | apache-2.0 | 3,325 | [
"ORCA"
] | 750ef8cd0db6c83747de0e9bbd194c468b1a2c09c51593d59da1580ca7ebdb8e |
#!/usr/bin/env python
# File created on 17 Apr 2013
from __future__ import division
__author__ = "Will Van Treuren"
__copyright__ = "Copyright 2013, The QIIME project"
__credits__ = ["Will Van Treuren, Julia Goodrich, Luke Ursell"]
__license__ = "GPL"
__version__ = "1.8.0-dev"
__maintainer__ = "Will Van Treuren"
__ema... | wasade/qiime | scripts/make_bipartite_network.py | Python | gpl-2.0 | 12,789 | [
"Cytoscape"
] | c1831371d012685584fa99aaa0a0c3e86550e85f1205d77065fd1f798dd55add |
#-*- encoding=utf-8 -*-
'''
Created on Jan 18, 2013
@author: brian
'''
import openid
from openid.fetchers import HTTPFetcher, HTTPResponse
from urlparse import parse_qs, urlparse
from django.conf import settings
from django.test import TestCase, LiveServerTestCase
from django.core.cache import cache
from django.test.... | ahmedaljazzar/edx-platform | openedx/core/djangoapps/external_auth/tests/test_openid_provider.py | Python | agpl-3.0 | 21,149 | [
"Brian"
] | c18dbd0ffdaae219382b5b56f7e7181b1c333dafc4d5c54b02bfc1acea0f4a8d |
#
# Trees.py
#
# Copyright 2005 by Frank Kauff & Cymon J. Cox. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
#
# Tree class handles phylogenetic trees. Provides a set of method... | dbmi-pitt/DIKB-Micropublication | scripts/mp-scripts/Bio/Nexus/Trees.py | Python | apache-2.0 | 30,175 | [
"Biopython"
] | e04eec7602882ddbf2c11e2a0b1d3a5e6ddf98adac9fc11dfee607f4ec0ac680 |
from __future__ import print_function
__author__ = """Alex "O." Holcombe, Charles Ludowici, """ ## double-quotes will be silently removed, single quotes will be left, eg, O'Connor
import time, sys, platform, os
from math import atan, atan2, pi, cos, sin, sqrt, ceil, radians, degrees
import numpy as np
import psychopy, ... | alexholcombe/dot-jump | dataRaw/Fixed Cue/test_dot-jump25Oct2016_10-46.py | Python | gpl-3.0 | 25,087 | [
"Gaussian"
] | 4bb005f51179045d1c73d5ee25fc75be9e6cddcdc32117c8198528d95bbc7bd2 |
# -*- coding: utf-8 -*-
"""
OficinaActivity.py
Create Oficina Activity
Copyright 2007, NATE-LSI-EPUSP
Oficina is developed in Brazil at Escola Politécnica of
Universidade de São Paulo. NATE is part of LSI (Integrable
Systems Laboratory) and stands for Learning, Work and Entertainment
Research Group. Visit our web ... | alexandremartinazzo/oficina | OficinaActivity.py | Python | gpl-2.0 | 4,464 | [
"VisIt"
] | fca982fdb859923c38070cb55e3a402bc263234d4a5cb63a9d26cc4f05c712be |
#!/usr/bin/env python2.7
# -*- coding: utf-8 -*-
####################################################################################
### Copyright (C) 2015-2019 by ABLIFE
####################################################################################
########################################################... | ablifedev/ABLIRC | ABLIRC/bin/public/iv_cluster/cage_cluster.py | Python | mit | 10,542 | [
"HTSeq"
] | d1c4a2b99fb4181ec0c1809099a46074fcb91785d3bfaccd238038f3345123d5 |
import random
from pokemon_type import Type
class MoveBase():
STATUS = 0
PHYSICAL = 1
SPECIAL = 2
class Move():
def __init__(self, name, hex, type, base, power, accuracy, effects):
self.name = name
self.hex = hex
self.type = type
self.base = base
self.power =... | V-FEXrt/Pokemon-Spoof-Plus | Pokemon/pokemon_move.py | Python | mit | 14,851 | [
"BLAST"
] | fa4b93e0dbf391027c14b9c85cb01a177434cf9ce78c6fd528340f09a63a1c9a |
# -*- coding: utf-8 -*-
## Copyright (c) 2015-2020, Exa Analytics Development Team
## Distributed under the terms of the Apache License 2.0
"""
Tests for :mod:`~exatomic.nwchem.output`
#############################################
"""
#import numpy as np
#import pandas as pd
from unittest import TestCase
from exatomic.... | exa-analytics/atomic | exatomic/nwchem/tests/test_output.py | Python | apache-2.0 | 2,589 | [
"NWChem"
] | 4f90efae0bc1a7804b53797c7ff8066de26db2d7a04556836f055c3b6e93095d |
#!/usr/bin/env python
#
# Restriction Analysis Libraries.
# Copyright (C) 2004. Frederic Sohm.
#
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
#
r"""Print the results of restriction enzyme... | zjuchenyuan/BioWeb | Lib/Bio/Restriction/PrintFormat.py | Python | mit | 14,066 | [
"Biopython"
] | 59c5c79025cbd5e1d59e9ce4b9c0642ef0958992f45338b92254db9e720d55e2 |
# -*- coding: utf-8 -*-
# vi:si:et:sw=4:sts=4:ts=4
##
## Copyright (C) 2012 Async Open Source <http://www.async.com.br>
## All rights reserved
##
## This program is free software; you can redistribute it and/or modify
## it under the terms of the GNU General Public License as published by
## the Free Software Foundati... | andrebellafronte/stoq | stoqlib/gui/test/test_productstockeditor.py | Python | gpl-2.0 | 1,245 | [
"VisIt"
] | 6a5c3deffa0908128f443a576952c8473a823b74c091b07daa6a14a87896ea7b |
# Copyright (c) 2015, Frappe Technologies Pvt. Ltd. and Contributors
# License: GNU General Public License v3. See license.txt
from __future__ import unicode_literals
import frappe
import json
import frappe.utils
from frappe.utils import cstr, flt, getdate, comma_and, cint
from frappe import _
from frappe.model.mapper... | meisterkleister/erpnext | erpnext/selling/doctype/sales_order/sales_order.py | Python | agpl-3.0 | 16,669 | [
"VisIt"
] | 15ba41f305d89abc0125f5637e04e944b23408f2f5497002ee04466edfd6ccba |
##
# Copyright (C) 2012 Jasper Snoek, Hugo Larochelle and Ryan P. Adams
#
# This code is written for research and educational purposes only to
# supplement the paper entitled
# "Practical Bayesian Optimization of Machine Learning Algorithms"
# by Snoek, Larochelle and Adams
# Advances in Neural Information Processing S... | recursix/spearmint-salad | spearmint_salad/spearmint/chooser/GPEIChooser.py | Python | bsd-3-clause | 13,384 | [
"Gaussian"
] | 80459973d622040c0c4b83c8e09c6524d996d1b337e494e5752b493bd5e132da |
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