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from django.db import connection
from django.http import HttpResponse
from catmaid.control.authentication import requires_user_role
from catmaid.models import UserRole
from rest_framework.decorators import api_view
from rest_framework.response import Response
class LocationLookupError(Exception):
pass
@api_vi... | catsop/CATMAID | django/applications/catmaid/control/transaction.py | Python | gpl-3.0 | 12,262 | [
"NEURON"
] | 4fe307a1ce2c206f23a2b06efdbf8256f40f2b2ab468eaa8864696d52820afb9 |
#===============================================================================
# LICENSE XOT-Framework - CC BY-NC-ND
#===============================================================================
# This work is licenced under the Creative Commons
# Attribution-Non-Commercial-No Derivative Works 3.0 Unported Li... | SMALLplayer/smallplayer-image-creator | storage/.xbmc/addons/net.rieter.xot.smallplayer/resources/libs/locker.py | Python | gpl-2.0 | 2,507 | [
"VisIt"
] | 2a7f4d4527ebc7cf7559660793f4fc4ce08e097be9d16c22eff6c3e73c330e01 |
# Copyright (c) 2017, Henrique Miranda
# All rights reserved.
#
# This file is part of the yambopy project
#
from yambopy import *
from netCDF4 import Dataset
from math import sqrt
import numpy as np
from cmath import exp
I = complex(0,1)
ha2ev = 27.211396132
ev2cm1 = 8065.54429
abs2 = lambda x: x.real**2 + x.imag**2... | henriquemiranda/yambopy | yambopy/dbs/elphondb.py | Python | bsd-3-clause | 3,462 | [
"Yambo"
] | 477399e5df447fdf920e4a490185ad4f557c3333318f4444ba6ef03494ed68f4 |
#
# Copyright (c) 2015 nexB Inc. and others. All rights reserved.
# http://nexb.com and https://github.com/nexB/scancode-toolkit/
# The ScanCode software is licensed under the Apache License version 2.0.
# Data generated with ScanCode require an acknowledgment.
# ScanCode is a trademark of nexB Inc.
#
# You may not use... | retrography/scancode-toolkit | src/extractcode/__init__.py | Python | apache-2.0 | 8,181 | [
"VisIt"
] | c6fa9724283c488da454207cf3c4b2e526c51aecff80714d485ef7d299d5e5be |
from __future__ import print_function
from builtins import range
import numpy as np
from numpy import cos, sin, pi
from enthought.tvtk.api import tvtk
from enthought.mayavi.scripts import mayavi2
def aligned_points(grid, nz=1, period=1.0, maxshift=0.4):
try:
nx = grid["nx"]
ny = grid["ny"]
... | kevinpetersavage/BOUT-dev | tools/pylib/boutdata/mayavi2.py | Python | gpl-3.0 | 3,148 | [
"Mayavi"
] | f214ce2d8d8238093cbc33b11219471f13cb3056996a9c24166057fdf82418fa |
#!/usr/bin/python
#
# This source file is part of appleseed.
# Visit http://appleseedhq.net/ for additional information and resources.
#
# This software is released under the MIT license.
#
# Copyright (c) 2012-2013 Jonathan Topf, Jupiter Jazz Limited
# Copyright (c) 2014-2017 Jonathan Topf, The appleseedhq Organizati... | aytekaman/appleseed | scripts/rendernode.py | Python | mit | 18,017 | [
"VisIt"
] | 36552e36a03585c18b4b6b092963c9bbce7ce3e2bcac7d2000b830a2f3a00fb2 |
# ----------------------------------------------------------------------------
# Copyright (c) 2016-2019, QIIME 2 development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file LICENSE, distributed with this software.
# ------------------------------------------------... | biocore/qiime2 | qiime2/core/type/tests/test_grammar.py | Python | bsd-3-clause | 20,736 | [
"scikit-bio"
] | 28011fea8d88715da3190e3fee5102461734a2f2d864f42234fd146e15e1ccff |
#!/usr/bin/env python
import argparse
import datetime
import json
import os
import re
from urllib.request import urlretrieve
import yaml
class PackagedAnnotationMeta():
@classmethod
def from_file(cls, fname):
meta = yaml.safe_load(open(fname))
return cls(meta)
def __init__(self, meta_di... | davebx/tools-iuc | data_managers/data_manager_packaged_annotation_data/data_manager/install_packaged_annotation_data.py | Python | mit | 4,611 | [
"Galaxy"
] | 3ea2520e44280d4bc54f513924a18912252c6b4c2926f0ecfd5c07b47aac942e |
from __future__ import absolute_import
from builtins import zip
from builtins import map
from builtins import str
from builtins import range
from builtins import object
from nose.tools import (assert_equal, assert_not_equal, raises, assert_true,
assert_false)
from nose.plugins.skip import SkipTe... | jhprinz/openpathsampling | openpathsampling/tests/testensemble.py | Python | lgpl-2.1 | 108,832 | [
"OpenMM"
] | 94fc9c1903ef59105cf628ca1e204cb5029623f0b6e8ca49278159cd2c0126dd |
""" Module with helper classes and functions. """
def assign_protein_data_to_blast_results(blast_records_in_object_and_list):
"""Searches data related to transcript in local database.
Modify objects by assigning protein's info to transcript.
"""
from newtbase.models import Transcript, Blast
... | michal-stuglik/newtbase | newtbase/utils.py | Python | gpl-2.0 | 1,135 | [
"BLAST"
] | c9d2c1b58b5665c2bc460015c598948c18cbea395ca121214e3abaca5053e889 |
# -*- coding: utf-8 -*-
# vi:si:et:sw=4:sts=4:ts=4
##
## Copyright (C) 2012-2013 Async Open Source <http://www.async.com.br>
## All rights reserved
##
## This program is free software; you can redistribute it and/or modify
## it under the terms of the GNU General Public License as published by
## the Free Software Foun... | andrebellafronte/stoq | stoqlib/database/debug.py | Python | gpl-2.0 | 9,291 | [
"VisIt"
] | f930a6dc0f6836e2f5aa78226b53fd6dc62ec8510a67c65c61acfa4d04db6b56 |
from __future__ import division, absolute_import
import astropy.stats
import glob
import math
import matplotlib.pyplot as plt
from matplotlib import ticker
from matplotlib.ticker import FormatStrFormatter
import numpy as np
import os
import pandas as pd
from scipy import optimize,spatial
###########################... | hrichstein/Stellar_mass_env_Density | Codes/Scripts/clean_copy.py | Python | mit | 75,233 | [
"Galaxy"
] | 09348955b895a575a069ec6799a9dab8897f28a52de2af4f515fb241ef79df1d |
# -*- coding: utf-8 -*-
#
# test_3d_gauss.py
#
# This file is part of NEST.
#
# Copyright (C) 2004 The NEST Initiative
#
# NEST is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 2 of the License, ... | hakonsbm/nest-simulator | topology/examples/test_3d_gauss.py | Python | gpl-2.0 | 2,931 | [
"Gaussian"
] | fe4e45d2082d5237afd265a130f53c22891702f6d5a419b8684c4098ea5be1f5 |
#!/usr/bin/env python3
import itertools
import logging
import operator
import unicodedata
import regex as re
from somajo import doubly_linked_list
from somajo import utils
from somajo.token import Token
class Tokenizer():
_supported_languages = set(["de", "de_CMC", "en", "en_PTB"])
_default_language = "de... | tsproisl/SoMaJo | somajo/tokenizer.py | Python | gpl-3.0 | 53,985 | [
"FEFF"
] | c3a3918c21fe97c77c6469deaa66194a7235ab227f5a5339a5032a7ca64fc493 |
import numpy as np
import pytest
import psi4
from .utils import compare_values
# Reference data generated from Psi's dfmp2 module
data = {
"df-mp2 ae": np.array([[ 0, 0, 9.62190509e-03],
[0, 5.49835030e-03, -4.81095255e-03],
[0, -5.49835030e-03, -4.81095255e-03]]),
"df-mp2 fc": np.array([... | jgonthier/psi4 | tests/pytests/test_gradients.py | Python | lgpl-3.0 | 2,081 | [
"Psi4"
] | 288972dcc920481b1db104a59396298e732892d3990212ba538533992e160ce6 |
# IWDEV Pi Traffic lights
import RPi.GPIO as GPIO
import time
# set GPIO Mode
GPIO.setmode(GPIO.BCM)
# set pin mode
GPIO.setup(02,GPIO.OUT)
GPIO.setup(03,GPIO.OUT)
GPIO.setup(04,GPIO.OUT)
# set inital pin state
GPIO.output(02,False)
GPIO.output(03,False)
GPIO.output(04,False)
# start a loop to control the lig... | qubecad/Pi_traffic_lights_IWDEV | gpio_traffic_lights.py | Python | apache-2.0 | 739 | [
"Amber"
] | 60e8d5b7d8c3cd8cd5908438a67b90aace96ea72658540f6aac54d99456cf955 |
from pymol.wizard import Wizard
from pymol import cmd
import pymol
import traceback
sele_prefix = "_pf_s_"
sele_prefix_len = len(sele_prefix)
dist_prefix = "_pf_d_"
indi_sele = "_indicate_pf"
class Pair_fit(Wizard):
def __init__(self,_self=cmd):
Wizard.__init__(self,_self)
self.memor... | gratefulfrog/lib | python/pymol/wizard/pair_fit.py | Python | gpl-2.0 | 6,453 | [
"PyMOL"
] | 1a4d3d07bda26b2752868834cacf9137750d07a93690e69da2d59975787d77ff |
# -*- encoding: utf-8 -*-
"""Functions for controlling family-wise error rate (FWER) using random
field theory (RFT) techniques and drawing diagnostic plots.
Author: Tuomas Puoliväli
Email: tuomas.puolivali@helsinki.fi
Last modified: 26th July 2018
License: Revised 3-clause BSD
Source: https://github.com/puolival/mult... | puolival/multipy | multipy/rft.py | Python | bsd-3-clause | 9,184 | [
"Gaussian"
] | 008f2c18f73c40efd79faa26a15725fe87280227bd69afc83f97a213e7c9762d |
from gevent import monkey
monkey.patch_all()
import os
import logging
import logging.config
from gevent.pool import Pool
from lxml import etree
from restkit import request
from restkit.globals import set_manager
from restkit.manager.mgevent import GeventManager
from urlparse import urljoin
from urlparse import urlpars... | kyleconroy/salesman | salesman/__init__.py | Python | mit | 4,734 | [
"VisIt"
] | 8c3b050c9171f02153163b31b0f4c0492b961fd64cee3cdeafeb2b12a25d0059 |
"""Contains the various config storage classes"""
# config_storage.py
# Mission Pinball Framework Wizard
# Written by Brian Madden, Gabe Knuth & John Marsh
# Released under the MIT License. (See license info at the end of this file.)
from mpf.system.utility_functions import Util
class MPFConfigFile():
def __... | missionpinball/mpf-wizard | mpfwiz/config_storage.py | Python | mit | 1,964 | [
"Brian"
] | 9b64287fa12cc5a3eac354669c36e72dcb6754e3c2de9388b1c97cc8aaedadea |
#!/usr/bin/env python
##############################################################################################
#
#
# regrid_emissions_N96e.py
#
#
# Requirements:
# Iris 1.10, time, cf_units, numpy
#
#
# This Python script has been written by N.L. Abraham as part of the UKCA Tutorials:
# http://www.ukca.ac.u... | acsis-project/emissions | emissions/python/timeseries_1960-2020/regrid_nC4H10_emissions_n96e_360d.py | Python | gpl-3.0 | 17,154 | [
"NetCDF"
] | d6d8971d5b70135c5855870c6fe65a7d592611a6612dafdba029aca80bca888a |
"""Setup tu build panISa program
Derived from setuptools based setup module
See:
https://packaging.python.org/en/latest/distributing.html
https://github.com/pypa/sampleproject
"""
# Always prefer setuptools over distutils
from setuptools import setup, find_packages
# To use a consistent encoding
from codecs import ... | bvalot/panISa | setup.py | Python | gpl-3.0 | 6,696 | [
"VisIt",
"pysam"
] | b91d2983e86fcf8f49c1c3576a0523838301152e2ad551f9bbc891557c225345 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
#
# Copyright (c) 2020 Satpy developers
#
# satpy is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later ... | pytroll/satpy | satpy/readers/vii_l1b_nc.py | Python | gpl-3.0 | 6,435 | [
"NetCDF"
] | f39b5fafaaf3f3ce18c715eb3d183d07e014e60d43e46af78c888ea8968215c0 |
import circulartextlayout
import ui
layout_text = '''
************
************
bbbbbbbbbbbb
************
i*i*i*i*i*i*
************
************
'''
image_list = [ ui.Image.named(i) for i in 'Rabbit_Face Mouse_Face Cat_Face Dog_Face Octopus Cow_Face'.split()]
_range_12 = (.3, .34, .38, .42, .46, .5, .55, .6, .63, .7... | balachandrana/textlayout | circular_test4.py | Python | mit | 1,277 | [
"Octopus"
] | cfb86190242b7a30d67abf3f32fb39f3b03084697c3d71924fd870a30cd78e45 |
import url_file_read as provided
import math
import random
import project4
import matplotlib.pyplot as plt
protein_human = provided.read_protein(provided.HUMAN_EYELESS_URL)
protein_fly = provided.read_protein(provided.FRUITFLY_EYELESS_URL)
scoring_matrix = provided.read_scoring_matrix(provided.PAM50_URL)
"""
caluclat... | wchen1994/Alignments-of-Sequences | alignSeq/app4.py | Python | mit | 5,765 | [
"Firefly"
] | d365766e0a43cccc675fb79807a065460ec9a89abe7be7306c8e482934e1ea5e |
from server.lib.bottle import Bottle, debug,request,route, run, redirect
import json
import random
# use the Jinja templating system
from view_helper import JINJA_ENV
import urllib
from google.appengine.api import urlfetch
from google.appengine.ext import ndb
def invoke_verify(solution,lan,tests=""):
url = "http://... | lamkeewei/battleships | server/controllers/Utility.py | Python | apache-2.0 | 2,726 | [
"Firefly"
] | 4fa4cd98f24bb8bb97caf6ae8e2ac9d7333ec6d4757842bf8b3cd0b221019f35 |
from collections import namedtuple
from bottle_utils.i18n import lazy_gettext as _
__all__ = ('LBAND', 'KUBAND', 'L_PRESETS', 'KU_PRESETS', 'PRESETS')
Preset = namedtuple('Preset', ('label', 'index', 'values'))
LBAND = 'l'
KUBAND = 'ku'
L_PRESETS = [
# Translators, name of the L-band tuner preset covering AF... | Outernet-Project/librarian | librarian/data/tuner_presets.py | Python | gpl-3.0 | 3,433 | [
"Galaxy"
] | d5bb2e87e2daa1c001a8f649d1fe2be6c13e28b3963dc302cdad194e517563ea |
#! /usr/bin/env python
# -*- coding: UTF-8 -*-
import os
import sys
import setuptools
from distutils.command.clean import clean as _clean
from distutils.command.build import build as _build
from setuptools.command.sdist import sdist as _sdist
from setuptools.command.build_ext import build_ext as _build_ext
try:
... | qisanstudio/qsapp-riitc | setup.py | Python | mit | 2,804 | [
"GULP"
] | c538f5ef8bf59c66955da7543f58a1fbf50e904314a27eb1a4daaa907fb321be |
import h5py
import sys
import os.path as op
from fos import *
import numpy as np
a=np.loadtxt(op.join(op.dirname(__file__), "..", "data", "rat-basal-forebrain.swc") )
pos = a[:,2:5].astype( np.float32 )
radius = a[:,5].astype( np.float32 ) * 4
# extract parent connectivity and create full connectivity
parents = a[1:... | fos/fos | examples/dynamic/neuron.py | Python | bsd-3-clause | 950 | [
"NEURON"
] | d71b0de75cef532b02ac814dc133bf8ef4e73fabd7dff75101d40af7617fc7a4 |
## @package SparseTransformer
# Module caffe2.experiments.python.SparseTransformer
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
from __future__ import unicode_literals
from caffe2.python import workspace
import scipy.sparse
class NetDefNode():
def _... | xzturn/caffe2 | caffe2/experiments/python/SparseTransformer.py | Python | apache-2.0 | 6,362 | [
"VisIt"
] | 288a4bf9f147a79d349d25a3f0baec2dc4dc550b7c6147212914ac08287612a9 |
""" Tests generating files for qm torsion scan """
import unittest
from torsionfit.tests.utils import get_fn, has_openeye
import torsionfit.qmscan.torsion_scan as qmscan
from torsionfit.qmscan import utils
from openmoltools import openeye
import tempfile
import os
from fnmatch import fnmatch
import shutil
class Test... | choderalab/Torsions | torsionfit/tests/test_qmscan.py | Python | gpl-2.0 | 5,916 | [
"Psi4"
] | 8fafa06ce76f9018b9217b110728509a4e03a109073be3e98617971637e31cd9 |
#
# Copyright 2015 LinkedIn Corp. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or ... | thomas-young-2013/wherehowsX | metadata-etl/src/main/resources/jython/CodeSearchExtract.py | Python | apache-2.0 | 8,557 | [
"ESPResSo"
] | e848ed7506bfa69911b3fac582260fa177a646a7477260443389a241eb069cf6 |
''' Significant lifting from https://jmetzen.github.io/2015-11-27/vae.html '''
import time
import numpy as np
import tensorflow as tf
from tensorflow.python.ops import rnn
import random
import matplotlib.pyplot as plt
import re, string
from sklearn.feature_extraction.text import CountVectorizer
from collections impo... | dricciardelli/vae2vec | def_def_alt_oh.py | Python | mit | 35,911 | [
"Gaussian"
] | 3c61807f5c1d905574f98931484df0fa2eb3c7ed14e28aba713a0c7ce9e4dbca |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
# Brian Cottingham
# spiffyech@gmail.com
#This file is part of Spiffybot.
#
#Spiffybot is free software: you can redistribute it and/or modify
#it under the terms of the GNU General Public License as published by
#the Free Software Foundation, either version 3 of the Licens... | spiffytech/spiffybot | spiffybot.py | Python | gpl-3.0 | 10,756 | [
"Brian"
] | 1ce9b6dca9dedfbf840d6aaa83850463b5e2fa06c8dba4d840f8bd329a1ffdb0 |
# Copyright 2016 Brian Innes
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, ... | brianinnes/pycupi | python/vPiP/constrainDrawingRectangle.py | Python | apache-2.0 | 8,796 | [
"Brian"
] | 5e089765242bfbb1f9c2e8bfae829b6f561032b3b110a52b71d32cbc6567aa4f |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
JahnTeller distortion analysis.
"""
import os
import numpy as np
from pymatgen.core.structure import Structure
from pymatgen.analysis.local_env import (
LocalStructOrderParams,
get_neighbors_of_s... | gVallverdu/pymatgen | pymatgen/analysis/magnetism/jahnteller.py | Python | mit | 21,643 | [
"CRYSTAL",
"pymatgen"
] | 8747772dedd2617779f14ce52fadf9698c63c4add3095d491f7021f7f3fc2298 |
"""
Student Views
"""
import datetime
import json
import logging
import uuid
import warnings
from collections import defaultdict, namedtuple
from urlparse import parse_qs, urlsplit, urlunsplit
import django
import analytics
import edx_oauth2_provider
from django.conf import settings
from django.contrib import message... | lduarte1991/edx-platform | common/djangoapps/student/views.py | Python | agpl-3.0 | 126,253 | [
"VisIt"
] | fd6b1f8b65bd77fab797bb96dcf82d9947ac80a08f35e3ed11c78f3314529d68 |
"""
========================
Random Number Generation
========================
==================== =========================================================
Utility functions
==============================================================================
random_sample Uniformly distributed floats over ``[0, 1)`... | ryfeus/lambda-packs | pytorch/source/numpy/random/__init__.py | Python | mit | 6,053 | [
"Gaussian"
] | 46f2870ba1a93c211c65d18b6220c6dd11f9bc46c97ce90be1f3348a07c10000 |
###
### GPAW benchmark: Carbon Fullerenes on a Lead Surface
###
from __future__ import print_function
from gpaw.mpi import size, rank
from gpaw import GPAW, Mixer, ConvergenceError
from gpaw.occupations import FermiDirac
from ase.io import read
try:
from gpaw.eigensolvers.rmm_diis import RMM_DIIS
except ImportErro... | mlouhivu/gpaw-accelerator-benchmarks | fullerenes-on-surface/input.py | Python | mit | 1,958 | [
"ASE",
"GPAW"
] | a28c6ba0cd50ee5953602e2270f420c898f5ac6db86f24ce248ac3472be4db2f |
"""
Django module container for classes and operations related to the "Course Module" content type
"""
import logging
from cStringIO import StringIO
from math import exp
from lxml import etree
from path import path # NOTE (THK): Only used for detecting presence of syllabus
import requests
from datetime import datetime... | abhilashnta/edx-platform | common/lib/xmodule/xmodule/course_module.py | Python | agpl-3.0 | 61,461 | [
"VisIt"
] | 4a8d445b98380e29d6dce350b9e6eb72e686b39012bee08644fd0630571dcc81 |
# Copyright 2021 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | tensorflow/privacy | tensorflow_privacy/privacy/analysis/rdp_privacy_accountant_test.py | Python | apache-2.0 | 12,865 | [
"Gaussian"
] | d3716cacaa0c86b5945601f58144c3b81f7fdb0e9ef6653b9e1656ae61065f96 |
# Copyright (c) 2018,2019 MetPy Developers.
# Distributed under the terms of the BSD 3-Clause License.
# SPDX-License-Identifier: BSD-3-Clause
"""Tools and calculations for interpolating specifically to a grid."""
import numpy as np
from .points import (interpolate_to_points, inverse_distance_to_points,
... | Unidata/MetPy | src/metpy/interpolate/grid.py | Python | bsd-3-clause | 12,473 | [
"Gaussian"
] | 34e3d9a29f6795f328d19036363da8a55b45e33c179a5d5790bea5e25b56d337 |
import matplotlib
import pylab as plt
from scipy import interpolate
from Pyheana.load.load_data import *
def plot_slices(data):
[n_cols, n_slices, n_turns] = data.shape
A = data[2,:,:] * data[13,:,:]
# Color cycle
n_colors = n_turns
colmap = plt.get_cmap('jet')
c = [colmap(i) for i in plt.li... | like2000/Pyheana | display/plot_slices.py | Python | gpl-2.0 | 3,174 | [
"Mayavi"
] | e4b50134ce6b1191576fa93b0d3dcf89e3edf23ab44c392c8de18eef269646cc |
#!/usr/bin/env python
#
# Appcelerator Titanium Module Packager
#
#
import os, subprocess, sys, glob, string
import zipfile
from datetime import date
cwd = os.path.abspath(os.path.dirname(sys._getframe(0).f_code.co_filename))
os.chdir(cwd)
required_module_keys = ['name','version','moduleid','description','copyright','... | simonrand/TiIntercom | build.py | Python | mit | 6,787 | [
"VisIt"
] | a26192638d4b7488dd8c25885d5b0787697a7c58b1f26668f01ebd14c3ccb568 |
# -*- coding: utf-8 -*-
"""
Generators for random graphs.
"""
# Copyright (C) 2004-2015 by
# Aric Hagberg <hagberg@lanl.gov>
# Dan Schult <dschult@colgate.edu>
# Pieter Swart <swart@lanl.gov>
# All rights reserved.
# BSD license.
from collections import defaultdict
import itertools
import math
import... | michaelpacer/networkx | networkx/generators/random_graphs.py | Python | bsd-3-clause | 31,462 | [
"VisIt"
] | a915537ed5f64e7638b3da5012702e3c7c12eaabe877ad42a9dbaa77fa241dcc |
# coding: UTF-8
# 미국의 주의 수도를 찾는 함수를 만드세요.
STATES_CAPITALS = {
'Alabama': 'Montgomery',
'Alaska': 'Juneau',
'Arizona': 'Phoenix',
'Arkansas': 'Little Rock',
'California': 'Sacramento',
'Colorado': 'Denver',
'Connecticut': 'Hartford',
'Delaware': 'Dover',
'Florida': 'Tallahassee',
... | inhwane/kookmin | source/problem/function_state_capital.py | Python | mit | 1,565 | [
"COLUMBUS"
] | e89bb1509217f07e49987a510e7fb1d6146123f0409116f5adc24438d2c6934f |
# Copyright (C) 2008 NSC Jyvaskyla
# Please see the accompanying LICENSE file for further information.
from .atoms import Atoms
from .aseinterface import Hotbit, database_from_path
from .atoms import ExtendedTrajectory
from .electrostatics import Electrostatics
from .element import Element
from .elements import Elemen... | pekkosk/hotbit | hotbit/__init__.py | Python | gpl-2.0 | 1,867 | [
"Gaussian"
] | b5f6a93b927782f990045fa7ca33ec75631324d25c62ada503de2ef730f965d6 |
from django.db import IntegrityError
from django.utils.functional import cached_property
from redis.exceptions import ConnectionError, ResponseError
from experiments.models import Enrollment
from experiments.manager import experiment_manager
from experiments.dateutils import now, fix_awareness, datetime_from_timestam... | mixcloud/django-experiments | experiments/utils.py | Python | mit | 18,840 | [
"VisIt"
] | d17dff353e22df0607921e5a89b38d22e7d6950e45ba0ff27d38152ac077db54 |
#!python
import random
import math
import pyglet
import pyglet.gl as gl
import vector as vec
import timevars as tv
from gameassets import GameAssets
from config import Config
#gAssets = None
class Swarm(object):
''' All the non-player objects (not sure if ShotSprites are included)'''
def __init__(self, ... | sergio-py2/meteor | sprites.py | Python | mit | 20,802 | [
"Galaxy"
] | 04c18390b6dabd4cc2f4ca931728dc18242d5d1d29b0a9c044b71d79b134a57e |
from __future__ import print_function, division
import random
from sympy.core.basic import Basic
from sympy.core.compatibility import is_sequence, as_int, range
from sympy.core.function import count_ops
from sympy.core.decorators import call_highest_priority
from sympy.core.singleton import S
from sympy.core.symbol i... | vipulroxx/sympy | sympy/matrices/dense.py | Python | bsd-3-clause | 42,837 | [
"DIRAC"
] | d266a5a63800a51b706b1f725794846db715db8c9a1e406cde7d0abd6151670d |
#!/usr/bin/env python3
import logging
import os
import pathlib
import numpy as np
import pytest
from pysisyphus.calculators.ORCA import ORCA
from pysisyphus.constants import ANG2BOHR
from pysisyphus.Geometry import Geometry
from pysisyphus.irc.GonzalesSchlegel import GonzalesSchlegel
from pysisyphus.irc.DampedVelocit... | eljost/pysisyphus | tests_staging/irc_hfabstraction/test_hfabstraction_irc.py | Python | gpl-3.0 | 3,585 | [
"ORCA"
] | 0adaa99829bf234d6564ffde70865b6cf4990c2c077ecac337429e2873bcfe13 |
# coding=utf-8
# Copyright 2022 The Edward2 Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law o... | google/edward2 | experimental/marginalization_mixup/sngp.py | Python | apache-2.0 | 30,800 | [
"Gaussian"
] | 2c76a0b825a85532722c238eea32e1e9669b73d52efc3a9e38c16123fc7ed465 |
"""
This is a financial market model written in indra.
It is intended to demonstrate how the interaction of value
investors and trend followers can produce cyclical price
changes.
"""
from math import isclose
from indra.agent import Agent
from indra.composite import Composite
from indra.display_method... | gcallah/Indra | models/fmarket.py | Python | gpl-3.0 | 6,817 | [
"Gaussian"
] | f7b16c71bb7afc035f9db7e6361759d694284d9b4e0d1c45bb97dc9bfeb9117e |
# Copyright (C) 2012,2013
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of t... | junghans/espressopp | src/PLogger.py | Python | gpl-3.0 | 1,899 | [
"ESPResSo"
] | 944b3c255128510ecf1cf8bbca86f6e9b44e24b76d9508a95502bdcafc52fd37 |
from __future__ import division
import numpy as np
from scipy.ndimage import gaussian_filter, gaussian_laplace
import math
from math import sqrt, log
from scipy import spatial
from ..util import img_as_float
from .peak import peak_local_max
from ._hessian_det_appx import _hessian_matrix_det
from ..transform import inte... | kenshay/ImageScript | ProgramData/SystemFiles/Python/Lib/site-packages/skimage/feature/blob.py | Python | gpl-3.0 | 19,138 | [
"Gaussian"
] | 6ae17cbf9e56d985ba239101f40084cb65823215733dd1c0bf91536948a92b99 |
#! /usr/bin/env python
import re
import math
import collections
import numpy as np
import time
import operator
from scipy.io import mmread, mmwrite
from random import randint
from sklearn import cross_validation
from sklearn import linear_model
from sklearn.grid_search import GridSearchCV
from sklearn import preproces... | Goodideax/CS249 | predict_combine_1000.py | Python | bsd-3-clause | 14,591 | [
"Gaussian"
] | 140da85ae98fe09c5f7c5af892b6864db26ffd00a3adb67d8e81923e869b6d46 |
"""
Noise covariance function
-------------------------
NoiseCFISO
NoiseCFReplicates
"""
import sys
sys.path.append("../")
# import python / numpy:
import scipy as SP
from pygp.covar import CovarianceFunction
class NoiseCFISO(CovarianceFunction):
"""
Covariance function for Gaussian observation noise fo... | PMBio/pygp | pygp/covar/noise.py | Python | gpl-2.0 | 3,746 | [
"Gaussian"
] | e3c192e6c50ba81cc6adf5987ffd67b185a964565979ed74092965397bd2a0e3 |
"""
Perform Levenberg-Marquardt least-squares minimization, based on MINPACK-1.
AUTHORS
The original version of this software, called LMFIT, was written in FORTRAN
as part of the MINPACK-1 package by XXX.
Craig Markwardt converted the FORTRAN code to IDL. The information for ... | Kruehlio/XSspec | utils/mpfit.py | Python | mit | 93,147 | [
"Gaussian"
] | 3970dd996a0fd8ee9bc9f098c129776640d3219cbfb5f212c95243da8c248af7 |
# Copyright 2012, Nachi Ueno, NTT MCL, Inc.
# All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License"); you may
# not use this file except in compliance with the License. You may obtain
# a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unles... | eayunstack/neutron | neutron/tests/unit/agent/linux/test_iptables_firewall.py | Python | apache-2.0 | 97,081 | [
"FEFF"
] | 2ddbcaa7d3a3c00e5122258039c919aa4dad9b9c43192fd2a40a6e5d372ab977 |
import os
import unittest
import pytest
import deepchem as dc
import numpy as np
from deepchem.models.losses import L2Loss
from deepchem.feat.mol_graphs import ConvMol
try:
import tensorflow as tf
from tensorflow.keras.layers import Input, Dense
class MLP(dc.models.KerasModel):
def __init__(self,
... | deepchem/deepchem | deepchem/models/tests/test_pretrained_keras.py | Python | mit | 5,350 | [
"RDKit"
] | 21771535979108881c229bbb91e9c36a4f59f1ec185ad2b9703f119104a93132 |
from warnings import warn
import numpy as np
import pandas as pd
from pandas import DataFrame, Series
from shapely.geometry import box
from shapely.geometry.base import BaseGeometry
from .array import GeometryArray, GeometryDtype
def is_geometry_type(data):
"""
Check if the data is of geometry dtype.
... | jdmcbr/geopandas | geopandas/base.py | Python | bsd-3-clause | 112,668 | [
"Bowtie"
] | fb41086cf21d980691f471aa3d00838a311044720bdb01a7521e7c2ded590dd1 |
# -*- coding: utf-8 -*-
###############################################################################
#
# This source file is part of the tomviz project.
#
# Copyright Kitware, Inc.
#
# This source code is released under the New BSD License, (the "License").
#
# Unless required by applicable law or agreed to in ... | cjh1/tomviz | tomviz/python/tomviz/utils.py | Python | bsd-3-clause | 15,400 | [
"VTK"
] | 134c0ed8dcfc6aeaef34c4aafee44a00b0e31fc12ae7c71be2aadb19eac63a38 |
from itertools import chain
from optparse import make_option
from django.core import serializers
from django.core.management.base import BaseCommand, CommandError
from catmaid.control.tracing import check_tracing_setup
from catmaid.models import Class, ClassInstance, ClassInstanceClassInstance, \
Relation, Con... | catsop/CATMAID | django/applications/catmaid/management/commands/catmaid_export_data.py | Python | gpl-3.0 | 12,506 | [
"NEURON"
] | 2baf2713ee42b6db639c3c2bf2db292ab153b74e2ab025e50ff978e46ff0fde5 |
# #!/usr/bin/env python
# -*- coding: utf-8 -*-
# <HTTPretty - HTTP client mock for Python>
# Copyright (C) <2011> Gabriel Falcao <gabriel@nacaolivre.org>
#
# Permission is hereby granted, free of charge, to any person
# obtaining a copy of this software and associated documentation
# files (the "Software"), to deal ... | letolab/HTTPretty | setup.py | Python | mit | 3,428 | [
"VisIt"
] | 39d1ee85669d8f1d9314031599767fc430ab38fae99e24c07b61b133c6984592 |
# Copyright (C) 2012,2013,2015,2016
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the ... | kkreis/espressopp | src/VerletList.py | Python | gpl-3.0 | 3,541 | [
"ESPResSo"
] | 85c28637d774883358c09a0befffca2b4d7079aede72a0161a56deffe8ec45cd |
"""Algorithms for spectral clustering"""
# Author: Gael Varoquaux gael.varoquaux@normalesup.org
# Brian Cheung
# Wei LI <kuantkid@gmail.com>
# License: BSD
import warnings
import numpy as np
from ..base import BaseEstimator, ClusterMixin
from ..utils import check_random_state, as_float_array, depreca... | florian-f/sklearn | sklearn/cluster/spectral.py | Python | bsd-3-clause | 17,870 | [
"Brian",
"Gaussian"
] | 04f2ddb724b046e4c06d9fe5feeb42983c38ea41063fd45a942f1012d9f7753a |
#!/usr/local/bin/python
# Script: dumpsort.py
# Purpose: sort the snapshots in a LAMMPS dump file by atom ID
# Syntax: dumpsort.py oldfile N newfile
# oldfile = old LAMMPS dump file in native LAMMPS format
# N = column # for atom ID (usually 1)
# newfile = new sorted LAMMPS dump file
# Aut... | val-github/lammps-dev | tools/python/dumpsort.py | Python | gpl-2.0 | 697 | [
"LAMMPS"
] | 64a7ed67d0db2ad3ee32ece32888950a2eeab52c883b27224d84f4da7692d87b |
# Copyright 2015 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | sarvex/tensorflow | tensorflow/python/ops/nn_impl.py | Python | apache-2.0 | 100,241 | [
"Gaussian"
] | 316a1b3d655b70082d296c8bfbcf80b6bd3b592e4a1a59a2ab1e6f8020701f54 |
#-----------------------------------------------------------------------------
# Copyright (c) 2010-2012 Brian Granger, Min Ragan-Kelley
#
# This file is part of pyzmq
#
# Distributed under the terms of the New BSD License. The full license is in
# the file COPYING.BSD, distributed as part of this software.
#-----... | IsCoolEntertainment/debpkg_python-pyzmq | zmq/tests/test_ioloop.py | Python | lgpl-3.0 | 3,188 | [
"Brian"
] | deb83e74812f2e56fe159f31e28533f2669290b65de24c56120c4df2c7678470 |
import sys
from setuptools import setup
long_description = '''\
Raven Sentry client for Bash.
Logs error if one of your commands exits with non-zero return code and produces simple traceback for
easier debugging. It also tries to extract last values of the variables visible in the traceback.
Environment variables and... | hareevs/raven-bash | setup.py | Python | apache-2.0 | 1,462 | [
"VisIt"
] | 6c25b1d225e9f2265f4134f4ab1c82e2c38be843eb9aa766a141ad5316ba87f5 |
import datetime
import time
from decimal import Decimal
from django.db import models
from django.utils import timezone
from django.contrib.auth.models import User
from django.core.exceptions import ObjectDoesNotExist
from statisticscore import countries, session_types
# The following imports are used to process imag... | eyp-developers/statistics | statisticscore/models.py | Python | gpl-3.0 | 22,641 | [
"Amber"
] | 6b3a2c688fc2b56253e4a0a72c32aaa9dadb021f9c85af1b2bb57a1762e57b11 |
# vim: tabstop=4 shiftwidth=4 softtabstop=4
# Copyright 2011 Rackspace
# Copyright (c) 2011 X.commerce, a business unit of eBay Inc.
# All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License"); you may
# not use this file except in compliance with the License. You may obtain
# a copy of t... | rcbops/nova-buildpackage | nova/tests/test_network.py | Python | apache-2.0 | 66,384 | [
"FEFF"
] | a312e5e85e805ec296ed47516abff416cb93326c1f71281dc862769a8feb412f |
# -*- coding: utf-8 -*-
# Copyright 2022 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or... | googleapis/python-filestore | tests/unit/gapic/filestore_v1/test_cloud_filestore_manager.py | Python | apache-2.0 | 157,841 | [
"Octopus"
] | efc3f97f5c31130b8fc1c8c124e5cb7a1d9777821aad4ae381fa65ad2df56914 |
#!/usr/bin/env python
###############################################################################
# #
# This program is free software: you can redistribute it and/or modify #
# it under the terms of the GNU General Public License... | dparks1134/CommunityM | classifyBWA_16S.py | Python | gpl-3.0 | 17,166 | [
"BWA",
"pysam"
] | 7d04091f5d60d760c29b1ed9f8d0f94b2b7d2896fa70b7c3f6284e203663f042 |
import sys, collections, itertools, os.path, optparse
optParser = optparse.OptionParser(
usage = "python %prog [options] <in.gtf> <out.gff>",
description=
"Script to prepare annotation for DEXSeq." +
"This script takes an annotation file in Ensembl GTF format" +
"and outputs a 'flatten... | fchen365/RBP_models | python/dexseq_prepare_annotation.py | Python | mit | 6,125 | [
"HTSeq"
] | 74c498ebac5b29f42e56f99f17bd08bd0f4b5f9a09508ba58eaa0b6518609ba5 |
#A* -------------------------------------------------------------------
#B* This file contains source code for the PyMOL computer program
#C* copyright 1998-2000 by Warren Lyford Delano of DeLano Scientific.
#D* -------------------------------------------------------------------
#E* It is unlawful to modify or remove ... | gratefulfrog/lib | python/chempy/protein.py | Python | gpl-2.0 | 19,224 | [
"ChemPy",
"PyMOL"
] | 1d25836613348a60d810d54908b0d28e192fe495f7522b4fe9dee937b43d9a54 |
from rdkit import DataStructs
from rdkit import RDConfig
import unittest,os
def feq(a,b,tol=1e-4):
return abs(a-b)<tol
class TestCase(unittest.TestCase):
def setUp(self) :
self.dirname = os.path.join(RDConfig.RDBaseDir,'Code','DataStructs','testData')
self.filename = os.path.join(self.dirname,'zim.he... | adalke/rdkit | Code/DataStructs/Wrap/testFPB.py | Python | bsd-3-clause | 12,163 | [
"RDKit"
] | 6b5ff0f82e38f363792f3e6d50d155338d063cc7151abb51177f390eff896d46 |
from django.apps import apps as django_apps
from django.db.models.signals import post_save, post_delete
from django.dispatch import receiver
@receiver(post_save, weak=False, dispatch_uid="metadata_create_on_post_save")
def metadata_create_on_post_save(sender, instance, raw, created, using,
... | botswana-harvard/edc-meta-data | edc_metadata/signals.py | Python | gpl-2.0 | 2,695 | [
"VisIt"
] | 67d58ffa616effadac9496841de247dba534edb1886e38852353afc0a060be0d |
from __future__ import print_function
from miasm.expression.expression import *
from pdb import pm
print("""
Expression simplification demo.
(and regression test)
""")
a = ExprId('a', 32)
b = ExprId('b', 32)
c = ExprId('c', 32)
d = ExprId('d', 32)
e = ExprId('e', 32)
m = ExprMem(a, 32)
s = a[:8]
i1 = ExprInt(0x1, ... | mrphrazer/miasm | example/expression/simplification_tools.py | Python | gpl-2.0 | 1,140 | [
"VisIt"
] | 7938aed94618325d5864aa05427937af5897cd8fefcb9981a7ae19e09d9bbac8 |
"""
.. module:: VisVTK
:platform: Unix, Windows
:synopsis: VTK visualization component for NURBS-Python
.. moduleauthor:: Onur Rauf Bingol <orbingol@gmail.com>
"""
from random import random
from . import vis
from . import vtk_helpers as vtkh
import numpy as np
from vtk.util.numpy_support import numpy_to_vtk
... | orbingol/NURBS-Python | geomdl/visualization/VisVTK.py | Python | mit | 14,148 | [
"VTK"
] | ac7289b92e12dd125e079bfe9de809bd740168b999aecf4c97bdfbc827300f71 |
# coding=utf-8
# Copyright 2022 The Uncertainty Baselines Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by ap... | google/uncertainty-baselines | baselines/imagenet/hetsngp.py | Python | apache-2.0 | 22,003 | [
"Gaussian"
] | 727017073b26a4442baa986e803a71d061ff1a7248da12043d84b93350ebbaa4 |
#!/usr/bin/python2.5
################################################################################
# A script for getting the inchi file from KEGG and translating it to a giant
# SDF (a multi-molfile) so that it can be used with WebGCM to get the
# free energy of formation for each compound in KEGG
################... | eladnoor/carbofix | src/gibbs.py | Python | mit | 934 | [
"Pybel"
] | ff771db5c32bacbea9f9fa77ffc82bc9f04698cc17ce26614ac38853d2fc5769 |
# ##### BEGIN GPL LICENSE BLOCK #####
#
# This program is free software; you can redistribute it and/or
# modify it under the terms of the GNU General Public License
# as published by the Free Software Foundation; either version 2
# of the License, or (at your option) any later version.
#
# This program is distrib... | floaltvater/molblend | mb_utils.py | Python | gpl-2.0 | 57,132 | [
"ABINIT",
"Quantum ESPRESSO",
"phonopy"
] | 15a9760aee70794b22c1e3c418086cd6ceaf7f6f9787b3209308b2d0fa592588 |
import os
import subprocess
import sys
import threading
import functools
import contextlib
import logging
import re
import time
from StringIO import StringIO
from test import test_support
from concurrent import futures
from concurrent.futures._base import (
PENDING, RUNNING, CANCELLED, CANCELLED_AND_NOTIFIED, FINI... | cstipkovic/spidermonkey-research | python/futures/test_futures.py | Python | mpl-2.0 | 24,730 | [
"Brian"
] | 3b63404fbc48ac1b9756192b8d4d5494e0151f9896be2616caedbe2425e3d345 |
#!/usr/bin/env python
# Script to build windows installer packages for LAMMPS
# (c) 2017,2018,2019,2020 Axel Kohlmeyer <akohlmey@gmail.com>
from __future__ import print_function
import sys,os,shutil,glob,re,subprocess,tarfile,gzip,time,inspect
try: from urllib.request import urlretrieve as geturl
except: from urllib ... | lammps/lammps-packages | mingw-cross/cmake-win-on-linux.py | Python | mit | 15,175 | [
"LAMMPS",
"VTK"
] | 4662e83cb7c8b6fa2c4189c0fe7c99f9e91f0810933e3610f175b7447de4a0fa |
""" manage PyTables query interface via Expressions """
from __future__ import annotations
import ast
from functools import partial
from typing import Any
import numpy as np
from pandas._libs.tslibs import (
Timedelta,
Timestamp,
)
from pandas._typing import npt
from pandas.compat.chainmap import DeepChainMa... | rs2/pandas | pandas/core/computation/pytables.py | Python | bsd-3-clause | 19,641 | [
"VisIt"
] | ed5d9f8535b54043c49eedd48015d5bb74654984b8d68a5d0580aa400ce2b225 |
from rdkit import RDConfig
import sys, os
from time import sleep
from multiprocessing import Process, Value
import unittest
from rdkit import Chem
from rdkit.Chem import ChemicalForceFields
from rdkit.Chem import rdMolTransforms
class OptSafe:
def __init__(self):
self.minInfLoop = """minInfLoop
RDKit ... | ptosco/rdkit | Code/ForceField/Wrap/testConstraints.py | Python | bsd-3-clause | 12,188 | [
"RDKit"
] | a21c30278794e90a126550426a717714ebebdd52a979c084befd3ce11727a2dc |
# coding=utf-8
# Copyright 2020 The SimCLR Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or... | google-research/simclr | tf2/data_util.py | Python | apache-2.0 | 18,220 | [
"Gaussian"
] | 8c73c77f018b6f13267ee97c90fa24b978597bb11f97f7b3910b2490d44e59fc |
"""
This file is part of The Cannon analysis project.
Copyright 2014 Melissa Ness.
# urls
- http://iopscience.iop.org/1538-3881/146/5/133/suppdata/aj485195t4_mrt.txt for calibration stars
- http://data.sdss3.org/irSpectrumDetail?locid=4330&commiss=0&apogeeid=2M17411636-2903150&show_aspcap=True object explorer
- http... | mkness/TheCannon | code/fitspectra.py | Python | mit | 56,681 | [
"VisIt"
] | bd01448399dd67887e6ba01e55f3ba986e2bd9828df81b33578f33a1451263ad |
'''
Interpolation actors. Inserts additional events between each pair of events, using
a selected interpolation scheme.The interpolation schemes are:
* zero interpolation - insert zero values
* step interpolation - holds the last value
* linear interpolation - places values on a straight line between successive ev... | mm318/scipysim-nogui | scipysim/actors/signal/interpolator.py | Python | gpl-3.0 | 7,526 | [
"Brian"
] | 947d426b87f60c48d59a803ccd0ca4747934dbe16128c5c82a8038504ff72722 |
"""
Acceptance tests for studio related to the outline page.
"""
import json
from datetime import datetime, timedelta
import itertools
from pytz import UTC
from bok_choy.promise import EmptyPromise
from nose.plugins.attrib import attr
from ...pages.studio.settings_advanced import AdvancedSettingsPage
from ...pages.stu... | hamzehd/edx-platform | common/test/acceptance/tests/studio/test_studio_outline.py | Python | agpl-3.0 | 81,400 | [
"VisIt"
] | 7061765e3a52e6ac16f12c54fffa32257b09c2f9691c956d68aacea98f97e685 |
"""
Brian T. Bailey
ITM 513 - MP4
MP4 Main Driver
"""
FTPHOST = 'glenellyn.rice.iit.edu'
FTPUSER = 'bbailey4'
FTPPSSWD = '@4clibri' | briantbailey/ITM-513 | mp4/src/mp4domain/ftpconfig.py | Python | mit | 132 | [
"Brian"
] | aa6c67d211db904db2138b6f53e86ec3ef176d190dd79064ea8bc6519c89a803 |
"""
Utilities for reading YAML configurations for SHyFT simulations.
"""
import os
from datetime import datetime
import yaml
import numpy as np
from shyft import api
from shyft.api import pt_gs_k, pt_ss_k, pt_hs_k, hbv_stack
from shyft.repository.netcdf import (
RegionModelRepository, GeoTsRepository, get_geo_ts... | felixmatt/shyft | shyft/orchestration/config.py | Python | lgpl-3.0 | 5,145 | [
"NetCDF"
] | a0bb28064d8d0e9637756e587d44f43b8d158095ad0881a39e95c6314e52fcc1 |
from __future__ import division
import numpy as np
import numpy.random as npr
import matplotlib.pyplot as plt
import matplotlib.gridspec as gridspec
from pybasicbayes.distributions import Regression, Gaussian
from pybasicbayes.util.text import progprint_xrange
from pypolyagamma.distributions import BernoulliRegressio... | mattjj/pyhsmm-slds | examples/bernoulli_slds.py | Python | mit | 5,425 | [
"Gaussian"
] | 170e8871bf0c4e031b2217f9b286cea9352942af113ad8bee37b5fc7ed95ce94 |
# (c) Nelen & Schuurmans. GPL licensed, see LICENSE.txt.
import datetime
import hashlib
import logging
import time
from django.core.cache import cache
from django.core.cache import get_cache
from django.core.urlresolvers import reverse
from django.db import models
from django.db.models.signals import post_delete
from... | lizardsystem/lizard-fewsjdbc | lizard_fewsjdbc/models.py | Python | gpl-3.0 | 28,909 | [
"VisIt"
] | ff58408149e22b25005c8f50692aea3e54e4292674c8a969d99da7a597f5edec |
import unittest
from paste.deploy import appconfig
from ecomaps.config.environment import load_environment
from ecomaps.services.netcdf import EcoMapsNetCdfFile, NetCdfService
__author__ = 'Phil Jenkins (Tessella)'
class EcoMapsNetCdfFileTest(unittest.TestCase):
def test_coverage_file_can_be_read(self):
... | NERC-CEH/ecomaps | ecomaps/services/tests/netcdf_test.py | Python | gpl-2.0 | 1,902 | [
"NetCDF"
] | fed79b7f4913fe1e5155323713ebf36e21981ba5b5686216978b9640c2810a8e |
# Map from VTK to enable key names
KEY_MAP = {
"Esc": "Esc",
"Tab": "Tab",
"Backtab": "Backtab",
"Backspace": "Backspace",
"Return": "Enter",
"Enter": "Enter",
"Insert": "Insert",
"Delete": "Delete",
"Pause": "Pause",
"Print": "Print",
"Sysreq": "Sysreq",
"Clear": "Clear"... | tommy-u/enable | enable/vtk_backend/constants.py | Python | bsd-3-clause | 799 | [
"VTK"
] | af7ec748cb033a1ef02655791e752d5778a79f1a66724eb6d4173089d301779c |
#! /usr/bin/env python
# findlinksto
#
# find symbolic links to a path matching a regular expression
import os
import sys
import regex
import getopt
def main():
try:
opts, args = getopt.getopt(sys.argv[1:], '')
if len(args) < 2:
raise getopt.error, 'not enough arguments'
except getopt.error, msg:
sys.stdo... | sensysnetworks/uClinux | user/python/Tools/scripts/findlinksto.py | Python | gpl-2.0 | 870 | [
"VisIt"
] | f32d4450d23b62b93d0efeb4c44402eb6b746f2ee8bf8296a426d7679c6fedde |
########################################################################
# $HeadURL$
########################################################################
""" SandboxMetadataDB class is a front-end to the metadata for sandboxes
"""
__RCSID__ = "$Id$"
import types
from DIRAC import gLogger, S_OK, S_ERROR
from DIRA... | avedaee/DIRAC | WorkloadManagementSystem/DB/SandboxMetadataDB.py | Python | gpl-3.0 | 17,132 | [
"DIRAC"
] | f9cce57d000ea75067e4ec2aa9b33b91ff796bf4fc4f63d42d8348e15cbf63f6 |
''' <h1> Library for specular magnetic x-ray reflectivity</h1>
The magnetic reflectivity is calculated according to: S.A. Stephanov and S.K Shina PRB 61 15304.
Note: The documentation is not updated from the interdiff model!
<h2>Classes</h2>
<h3>Layer</h3>
<code> Layer(b = 0.0, d = 0.0, f = 0.0+0.0J, dens = 1.0, magn_a... | jackey-qiu/genx_pc_qiu | models/xmag.py | Python | gpl-3.0 | 13,739 | [
"Gaussian"
] | acc67360f66eaa313cdb5174d46abf7a2d677e5669857fda52dd7676f4a512a1 |
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