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#!/usr/bin/env python
# Copyright (c) 2012 The Chromium Authors. All rights reserved.
# Use of this source code is governed by a BSD-style license that can be
# found in the LICENSE file.
'''Unit tests for misc.GritNode'''
import os
import sys
if __name__ == '__main__':
sys.path.append(os.path.join(os.path.dirname... | JoKaWare/WTL-DUI | tools/grit/grit/node/misc_unittest.py | Python | bsd-3-clause | 13,740 | [
"xTB"
] | 35eee2f6d1b22d4a9e5a62f92dbf89a87e44a24d1c782b85563f818f03a1e7f9 |
"""
A context manager for managing things injected into :mod:`__builtin__`.
Authors:
* Brian Granger
* Fernando Perez
"""
#-----------------------------------------------------------------------------
# Copyright (C) 2010-2011 The IPython Development Team.
#
# Distributed under the terms of the BSD License.
#
# C... | noslenfa/tdjangorest | uw/lib/python2.7/site-packages/IPython/core/builtin_trap.py | Python | apache-2.0 | 3,953 | [
"Brian"
] | e81178ea89ee64025c4769522c8152bacc0b2a20a1762e3cdff59eed0b13dffa |
#!/usr/bin/env python
import vtk
from vtk.test import Testing
from vtk.util.misc import vtkGetDataRoot
VTK_DATA_ROOT = vtkGetDataRoot()
# Simple volume rendering example.
reader = vtk.vtkImageReader()
reader.SetDataByteOrderToLittleEndian()
reader.SetDataExtent(0, 63, 0, 63, 1, 93)
reader.SetFilePrefix(VTK_DATA_ROOT +... | HopeFOAM/HopeFOAM | ThirdParty-0.1/ParaView-5.0.1/VTK/Rendering/Volume/Testing/Python/volTM3DRotateClip.py | Python | gpl-3.0 | 4,408 | [
"VTK"
] | 243c5178a35781e1378f824789e411bf374ee5fe722bbd6de13f48baeaaf1ab3 |
# -*- coding: utf-8 -*-
#
# pulsepacket.py
#
# This file is part of NEST.
#
# Copyright (C) 2004 The NEST Initiative
#
# NEST is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 2 of the License, or... | lekshmideepu/nest-simulator | pynest/examples/pulsepacket.py | Python | gpl-2.0 | 11,262 | [
"Gaussian",
"NEURON"
] | 1d88ecd5d97d73c531034c544af29d9ca6e2dac2b3674d5a9edf582c3d5a2944 |
# (C) 2013, Markus Wildi, markus.wildi@bluewin.ch
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2, or (at your option)
# any later version.
#
# This program is distr... | jstrobl/rts2 | scripts/rts2saf/unittest/test_sextractor.py | Python | lgpl-3.0 | 2,762 | [
"VisIt"
] | cbf0e81e5dff77fb05da35fd63b73058fdae269e8ec8a13eeb1497741c32dd5f |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
This script helps to create a new branch for a new Odoo version from the
another existing branch, making the needed changes on contents.
Installation
============
For using this utility, you need to install these dependencies:
* github3.py library for handling Githu... | gurneyalex/maintainers-tools | tools/migrate_branch.py | Python | agpl-3.0 | 15,041 | [
"VisIt"
] | 4ab60ec091c4b2bc919cc69a727f2d7986a6cc7fc12bbe081ce9b7c552f207f4 |
"""
Handles testing of the script files
#
Written By: Matthew Stadelman
Date Written: 2017/04/09
Last Modifed: 2017/04/23
#
"""
from glob import glob
import os
import pytest
import re
from subprocess import Popen, PIPE, check_output
import sys
import yaml
import apmapflow as apm
def check_path(*args):
r"""
ru... | stadelmanma/netl-ap-map-flow | test/integration/TestScripts.py | Python | gpl-3.0 | 10,323 | [
"ParaView"
] | a199ce706da7335050b8aa237ba927121e8efff2c79ce0c12ec428ff24d7dc75 |
#!/usr/bin/python3
"""Script to check *.so for GCC or LLVM compilation.
Extracts .comment section and examines for proper vintage.
"""
from collections import defaultdict
import getopt
import os
import re
import sys
import script_utils as u
# Files to look at
flag_infiles = []
# Summarize version usage
flag_summ... | thanm/devel-scripts | solib-flavor.py | Python | apache-2.0 | 2,916 | [
"VisIt"
] | 00cb875f9e38728190679b8e9e8dd9f7cb365de9eefebcc8ab75c05fa1dbac44 |
import numpy as np
import cv2
#getting the video from webcam
cap = cv2.VideoCapture(0)
while True:
_, frame = cap.read()
hsv = cv2.cvtColor(frame, cv2.COLOR_BGR2HSV)
#threshold values
lower_red1 = np.array([150,120,60])
upper_red1 = np.array([180,255,255])
lower_red2 = np.array([0,140,60])
... | olafplacha/OpenCV-intro | Color_filtering_&_smoothing_kernels.py | Python | mit | 1,702 | [
"Gaussian"
] | d35bc39cccac4894e76fd922dc435fad79fa5029649e3e91f2cd14efeebc0708 |
def load_microbial_data( GALAXY_DATA_INDEX_DIR, sep='\t' ):
# FIXME: this function is duplicated in the DynamicOptions class. It is used here only to
# set data.name in exec_after_process().
microbe_info= {}
orgs = {}
filename = "%s/microbial_data.loc" % GALAXY_DATA_INDEX_DIR
for... | dbcls/dbcls-galaxy | tools/data_source/microbial_import_code.py | Python | mit | 7,219 | [
"Galaxy"
] | 80b0b83c12697508429bc5a34b3983211ac06c9f9e2ad645f5d2006c41778288 |
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
import platform
class Bwa(Package):
"""Burrow-Wheeler Aligner for pairwise alignment between DNA... | iulian787/spack | var/spack/repos/builtin/packages/bwa/package.py | Python | lgpl-2.1 | 2,146 | [
"BWA"
] | 9afa16ed8f6bf59217d11066e35cd864dba61bf5651e6444386d9986f4cada3f |
# Copyright (c) 2012 OpenStack Foundation
# All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License"); you may
# not use this file except in compliance with the License. You may obtain
# a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless ... | silenceli/nova | nova/tests/unit/compute/test_resource_tracker.py | Python | apache-2.0 | 64,108 | [
"exciting"
] | 82c6680b14f30cd57a4b6abfc24f964318390c94aa8e3bc226bfbf130e796fa3 |
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not u... | jeffknupp/arrow | python/pyarrow/parquet.py | Python | apache-2.0 | 28,949 | [
"VisIt"
] | 1b921b566baecb2bceabc5e4f89c2fa6064734f53dfff67fb0554bd043995387 |
import bpy
from io_scene_cs.utilities import rnaType, rnaOperator, B2CS, BoolProperty
from io_scene_cs.utilities import RemovePanels, RestorePanels
def active_node_mat(mat):
if mat is not None:
mat_node = mat.active_node_material
if mat_node:
return mat_node
else:
return mat
... | baoboa/Crystal-Space | scripts/blender/io_scene_cs/ui/image.py | Python | lgpl-2.1 | 2,684 | [
"CRYSTAL"
] | 5a621f13c2eef531649debf4ea12272cfa3460a8034c7c9d34177cfde24cd8c9 |
import numpy as np
import pyworld as pw
# import soundfile as sf
import tensorflow as tf
import os, shutil
import glob
def get_speakers(trainset: str = './data/fourspeakers'):
'''return current selected speakers for training
eg. ['SF2', 'TM1', 'SF1', 'TM2']
'''
p = os.path.join(trainset, "*")
... | hujinsen/StarGAN-Voice-Conversion | utility.py | Python | mit | 5,941 | [
"Gaussian"
] | 3099764193fbc30c780e40a83382e2a9e3b3726cf2ce970e804d2771284b7462 |
"""
.. _sfm-track:
=======================================
Tracking with the Sparse Fascicle Model
=======================================
Tracking requires a per-voxel model. Here, the model is the Sparse Fascicle
Model (SFM), described in [Rokem2015]_. This model reconstructs the diffusion
signal as a combination o... | FrancoisRheaultUS/dipy | doc/examples/tracking_sfm.py | Python | bsd-3-clause | 5,688 | [
"Brian"
] | 88f9a1b7d94a73a88ab4763c032feb272e20060f4dad1d64eb088277df4eb9a1 |
import numpy as np
from ase.atoms import Atoms
from ase.calculators.singlepoint import SinglePointDFTCalculator
from ase.calculators.singlepoint import SinglePointKPoint
def read_gpaw_text(fileobj, index=-1):
if isinstance(fileobj, str):
fileobj = open(fileobj, 'rU')
notfound = []
def index_... | askhl/ase | ase/io/gpawtext.py | Python | gpl-2.0 | 6,137 | [
"ASE",
"GPAW"
] | ccfc98ebc5913ee1f30268b84719a964d0af61fa2cc1402761fe34cf82a1f18f |
"""
vtk surface runner
"""
import enaml
from enaml.qt.qt_application import QtApplication
def run():
with enaml.imports():
from vtk_surface_view import Main
app = QtApplication()
view = Main(custom_title='VTK Surface Example')
view.show()
# Start the application event loop
app.star... | viz4biz/PyDataNYC2015 | tutorial/vtk_surface_run.py | Python | apache-2.0 | 332 | [
"VTK"
] | 493e8fe79dc8133a2af58a5f8a70718e3070a495d247ba92022d69402c60c193 |
#!/usr/bin/env python
# -*- encoding: utf-8 -*-
# CREATED:2015-02-02 10:08:46 by Brian McFee <brian.mcfee@nyu.edu>
'''Implementations of augmentation classes'''
from .time import *
from .pitch import *
from .background import *
from .ir import *
from .effects import *
from .sox import *
from .util import *
| silky/muda | muda/deformers/__init__.py | Python | apache-2.0 | 309 | [
"Brian"
] | a0b63770899dec359243ffa41c69d1dc343b39b1a1d2e52c329a24f5319445db |
#
# LSST Data Management System
# Copyright 2012-2016 LSST Corporation.
#
# This product includes software developed by the
# LSST Project (http://www.lsst.org/).
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free So... | yalsayyad/obs_decam | python/lsst/obs/decam/decamMapper.py | Python | gpl-3.0 | 14,828 | [
"VisIt"
] | 7a65f8fe6967e99e22ef3f421fcfff6be58b75fe035e74142fc05946775993a1 |
# ----------------------------------------------------------------------------
# Copyright 2015 Nervana Systems Inc.
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.o... | DougFirErickson/neon | tests/test_mergebroadcast_layer.py | Python | apache-2.0 | 10,406 | [
"Gaussian"
] | 1f63d93b178d2690253af7816d1d1988fdff64ed83110b03cdd6ee19fa9fe6bc |
# -*- coding: utf-8 -*-
# Copyright 2022 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or... | googleapis/python-artifact-registry | tests/unit/gapic/artifactregistry_v1/test_artifact_registry.py | Python | apache-2.0 | 86,313 | [
"Octopus"
] | cffffc76e78cd75be066fb5b164cfc41f4ef0b7aa4fee154ca2f24ea7c78b008 |
#
# Copyright (c) 2015 nexB Inc. and others. All rights reserved.
# http://nexb.com and https://github.com/nexB/scancode-toolkit/
# The ScanCode software is licensed under the Apache License version 2.0.
# Data generated with ScanCode require an acknowledgment.
# ScanCode is a trademark of nexB Inc.
#
# You may not use... | retrography/scancode-toolkit | src/typecode/magic2.py | Python | apache-2.0 | 8,462 | [
"VisIt"
] | 118c8050b00cd2e505dc6aa6d22652d173a2b993c38735addec5f7f98ab532ef |
import matplotlib.pyplot as plt
import numpy as np
def gaussian(x,x0,xsig):
'''
function to calculate the gaussian probability
INPUT:
x = where is the data point or parameter value
x0 = mu
xsig = sigma
'''
factor = 1. / (np.sqrt(xsig * xsig * 2. * np.pi))
exponent = -np.divide((x - x0) * (x - x0)... | jan-rybizki/Chempy | Chempy/data_to_test.py | Python | mit | 64,446 | [
"ChemPy",
"Galaxy",
"Gaussian"
] | 6d15e32c293fdf8e6ac4692b9415eef54a4ea290670b60b0679687fd329e62f0 |
import unittest
import mock
from kalliope.core.NeuronModule import NeuronModule
from kalliope.neurons.systemdate import Systemdate
class TestSystemdate(unittest.TestCase):
def setUp(self):
pass
def test_date_is_returned(self):
"""
Check that the neuron return consistent values
... | kalliope-project/kalliope | kalliope/neurons/systemdate/tests/test_systemdate.py | Python | gpl-3.0 | 1,004 | [
"NEURON"
] | 0a80d6c4e47665b76bf34cd52f24ce995c42a90e8ac4f48c2e76c337d0f13ddf |
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
from DIRAC.AccountingSystem.Client.Types.BaseAccountingType import BaseAccountingType
import DIRAC
__RCSID__ = "$Id$"
class DataOperation(BaseAccountingType):
def __init__(self):
super(DataOperati... | ic-hep/DIRAC | src/DIRAC/AccountingSystem/Client/Types/DataOperation.py | Python | gpl-3.0 | 1,372 | [
"DIRAC"
] | 5628278544bb7f699bff32be54dc2e4e0d4d3a6f1af5d747ca4d68c333cb68df |
# Copyright 2009-2014 Ram Rachum.
# This program is distributed under the MIT license.
from __future__ import with_statement
import os.path, sys
sys.path += [
os.path.dirname(__file__),
os.path.join(os.path.dirname(__file__), 'third_party.zip'),
]
import sys
import inspect
import wingapi
import shared
... | cool-RR/cute-wing-stuff | scripts/reverse_selection.py | Python | mit | 855 | [
"VisIt"
] | d0ac45ae6de1429df155fad64c1b2468dd2ee588428120f05c31d688fd897815 |
# -*- coding: utf-8 -*-
# Authors: Yücel Kılıç, Murat Kaplan, Nurdan Karapınar, Tolga Atay.
# This is an open-source software licensed under GPLv3.
from os import path
try:
import numpy as np
except ImportError:
print('Python cannot import numpy. Make sure numpy is installed.')
raise SystemExit
try:
i... | akdeniz-uzay/A-Track | sources.py | Python | gpl-3.0 | 11,219 | [
"Galaxy"
] | 1de085ce6b6167ba27ef5541877198ed2bc1fabcd5059576fb07dbedf7303627 |
../../../../../../share/pyshared/orca/scripts/apps/__init__.py | Alberto-Beralix/Beralix | i386-squashfs-root/usr/lib/python2.7/dist-packages/orca/scripts/apps/__init__.py | Python | gpl-3.0 | 62 | [
"ORCA"
] | df7fc3d9ee3537c8b052c54a7766525bdbfe4a1f5462fef24a4e125115104126 |
#
# @file TestAssignmentRule.py
# @brief AssignmentRule unit tests
#
# @author Akiya Jouraku (Python conversion)
# @author Ben Bornstein
#
# $Id$
# $HeadURL$
#
# ====== WARNING ===== WARNING ===== WARNING ===== WARNING ===== WARNING ======
#
# DO NOT EDIT THIS FILE.
#
# This file was generated automatically by ... | alexholehouse/SBMLIntegrator | libsbml-5.0.0/src/bindings/python/test/sbml/TestAssignmentRule.py | Python | gpl-3.0 | 4,938 | [
"VisIt"
] | 6a2c92557a51fe36a1ed49363eea423b787ef77d94134e556551c59ab70e97c4 |
#!/share/apps/local/anacondaz/bin/python
import sys,os
sys.path.append(".")
import numpy as np
import multiprocessing
import sassie.interface.input_filter as input_filter
import bayesian_ensemble_estimator as ensemble_fit
from mpi4py import MPI
svariables = {}
#### MPI Environment ####
comm=MPI.COMM_WORLD
rank=comm.G... | madscatt/zazzie | src_2.7/sassie/analyze/bayesian_ensemble_estimator/gui_mimic_quick_with_aux.py | Python | gpl-3.0 | 2,970 | [
"Gaussian"
] | 23eeb5021e84a9b5175e1beb809fef4a6b9283696380b2a40a9f3c3da92cd98e |
from behave import *
import operator
from django.db.models import Q
use_step_matcher("parse")
@given('Exists artist at group "{group_name}" by "{username}"')
def step_impl(context, group_name, username):
from django.contrib.auth.models import User
user = User.objects.get(username=username)
from musicseaap... | julio77nz/MusicSea | musicsea/features/steps/register_artist.py | Python | gpl-3.0 | 2,467 | [
"VisIt"
] | 34380161676be46273bd984913b35c24df2551e782c6f2a9ea84d361a2760d16 |
#!/usr/bin/env python
import vtk
from vtk.test import Testing
from vtk.util.misc import vtkGetDataRoot
VTK_DATA_ROOT = vtkGetDataRoot()
# Image pipeline
reader = vtk.vtkImageReader()
reader.ReleaseDataFlagOff()
reader.SetDataByteOrderToLittleEndian()
reader.SetDataExtent(0, 63, 0, 63, 1, 93)
reader.SetFilePrefix(VTK_D... | HopeFOAM/HopeFOAM | ThirdParty-0.1/ParaView-5.0.1/VTK/Imaging/Core/Testing/Python/TestImageWeightedSum.py | Python | gpl-3.0 | 1,288 | [
"VTK"
] | 95065df558dc0e757b030c7f0a370b616d2db7e5a46d8abbe4b4f20c56ddccec |
import json
from django.apps import apps as django_apps
from django.core.exceptions import MultipleObjectsReturned
from edc_base.model_mixins import ListModelMixin
from unittest.case import TestCase
from ..models import OutgoingTransaction
from ..transaction import deserialize
class SyncTestHelperError(Exception):
... | botswana-harvard/edc-sync | edc_sync/tests/sync_test_helper.py | Python | gpl-2.0 | 5,148 | [
"VisIt"
] | 30b3fa8320f039e04e61e1d2bd97ee30eacc3681bb71693b7daf89653b7f1c63 |
from collections import defaultdict
'''
Created on Aug 29, 2011
@authors: Serena, Kyle
'''
def iter_fasta(fasta_lines):
"""Yield sequences as (name, value) pairs from a FASTA file."""
seq = ""
seq_name = None
for line in fasta_lines:
line = line.strip()
if line.startswith(">"):
... | kylebittinger/brocc | brocclib/parse.py | Python | gpl-3.0 | 1,992 | [
"BLAST"
] | 690fda110b4035c68930d5566b97ee46c41e58afe9d852a28369864eac4bb2ae |
# -*- coding: utf-8 -*-
#
# Copyright (c) 2020, the cclib development team
#
# This file is part of cclib (http://cclib.github.io) and is distributed under
# the terms of the BSD 3-Clause License.
"""Test the DDEC6 in cclib"""
import os
import unittest
import numpy
from cclib.method import DDEC6, volume
from cclib.... | cclib/cclib | test/method/testddec.py | Python | bsd-3-clause | 8,461 | [
"Psi4",
"cclib"
] | 8c2976e0b0ec743848fe8b1ccfbe830480f7542e4e753e72d872ae1efaee249e |
"""
Fit Gaussian scale mixture to van Hateren patches.
"""
import sys
sys.path.append('./code')
from tools import Experiment, preprocess
from models import GSM, StackedModel, ConcatModel, MoGaussian
from transforms import LinearTransform, WhiteningTransform
from numpy import load, mean, std, sqrt, log
parameters = ... | lucastheis/isa | code/experiments/vanhateren_gsm.py | Python | mit | 2,642 | [
"Gaussian"
] | 89e08312e70f78f9868712fc0b74e87b475ba8b94ada9c707421e80f931acefa |
"""
This module contains tests for tofu.geom in its structured version
"""
# External modules
import os
import itertools as itt
import numpy as np
import matplotlib.pyplot as plt
import warnings as warn
# Importing package tofu.gem
import tofu as tf
from tofu import __version__
import tofu.defaults as tfd
import tofu... | Didou09/tofu | tofu/tests/tests01_geom/test_04_core_optics.py | Python | mit | 12,965 | [
"CRYSTAL"
] | e3bea78236ef97ba71b5dcad31dc5ad0c9e0b11efa28a565ded512f1e72d29c6 |
##############################################################################
# MDTraj: A Python Library for Loading, Saving, and Manipulating
# Molecular Dynamics Trajectories.
# Copyright 2012-2013 Stanford University and the Authors
#
# Authors: Robert McGibbon
# Contributors:
#
# MDTraj is free software: y... | marscher/mdtraj | MDTraj/formats/pdb/tests/test_pdb.py | Python | lgpl-2.1 | 6,394 | [
"MDTraj"
] | d07316e12c1ef5811b8dd9e2748855a8e96d5f3dae86ae811a66e73976ad3f84 |
""" This is a test of the chain
FTS3Client -> FTS3ManagerHandler -> FTS3DB
It supposes that the DB is present, and that the service is running
"""
from DIRAC.Core.Base.Script import parseCommandLine
parseCommandLine()
import unittest
import time
from DIRAC import gLogger
from DIRAC.DataManagementSystem.Cl... | Andrew-McNab-UK/DIRAC | tests/Integration/DataManagementSystem/Test_Client_FTS3.py | Python | gpl-3.0 | 6,872 | [
"DIRAC"
] | e3345e6ca3929a092413556bfd089deead90b2333bc13a875e08ff8bb2377881 |
#
# Copyright 2016 The BigDL Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in ... | intel-analytics/BigDL | python/orca/test/bigdl/orca/data/test_write_parquet.py | Python | apache-2.0 | 9,142 | [
"ORCA"
] | 7a6c8ee41e1842ac11b5e98392aad41b3f3dce149f1dea9c27a07c6c35886dd5 |
#!/usr/bin/env python3
import datetime
import enum
from pycaching import errors
from pycaching.util import parse_date
# prefix _type() function to avoid colisions with log type
_type = type
class Log(object):
"""Represents a log record with its properties."""
def __init__(self, *, uuid=None, type=None, te... | tomasbedrich/pycaching | pycaching/log.py | Python | lgpl-3.0 | 3,757 | [
"VisIt"
] | c972ba9f55f1d37ed8bfc0b049f34cd0aa760cd7b98618d1be476393157bf82c |
#!/usr/bin/env python
## \file tools.py
# \brief file i/o functions
# \author T. Lukaczyk, F. Palacios
# \version 7.0.3 "Blackbird"
#
# SU2 Project Website: https://su2code.github.io
#
# The SU2 Project is maintained by the SU2 Foundation
# (http://su2foundation.org)
#
# Copyright 2012-2020, SU2 Contributors (cf.... | EduardoMolina/SU2 | SU2_PY/SU2/io/tools.py | Python | lgpl-2.1 | 40,661 | [
"ParaView"
] | 4a7ab235eca77d638844882c94b0481f8169de5101a64bdcb04e21e8bb839328 |
#pylint: disable=missing-docstring
####################################################################################################
# DO NOT MODIFY THIS HEADER #
# MOOSE - Multiphysics Object Oriented Simulation Environment ... | liuwenf/moose | python/MooseDocs/MooseMarkdown.py | Python | lgpl-2.1 | 7,204 | [
"MOOSE"
] | 1ac09c3a6930cf9c1394dfdffac79003cd23a4f2435a5c0394195a720b2e6e76 |
# -*- coding: utf-8 -*-
"""
Regression tests for the Test Client, especially the customized assertions.
"""
from __future__ import unicode_literals
import datetime
import itertools
import os
from django.contrib.auth.models import User
from django.contrib.auth.signals import user_logged_in, user_logged_out
from django... | mcrowson/django | tests/test_client_regress/tests.py | Python | bsd-3-clause | 68,309 | [
"VisIt"
] | 768b22d8c9e7e8dbd1e61d3f6e158de00b58913b4cdd529120adeb9869d3dab1 |
# Copyright (C) 2009, Thomas Leonard
# See the README file for details, or visit http://0install.net.
import gtk
from dialog import Template
from zeroinstall import _
from zeroinstall.gtkui import help_box
from zeroinstall.injector.model import network_levels
from zeroinstall.injector import trust, gpg
from freshness ... | timdiels/zeroinstall | zeroinstall/0launch-gui/preferences.py | Python | lgpl-2.1 | 7,143 | [
"VisIt"
] | 326ef7f3dcd5e455aa86ae8feb9c215646b2c5704afce10e01fce62e8ebf7026 |
# Copyright 2020, The TensorFlow Federated Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law o... | google-research/federated | shrink_unshrink/simple_fedavg_tf.py | Python | apache-2.0 | 38,102 | [
"Gaussian"
] | a19f5c48096d1e9fb8c7cfb1794535d66fbd8433552666d8709322d906d4354c |
################################################################################
# header_operations expanded v.1.0.0 #
################################################################################
# TABLE OF CONTENTS
#########################################################... | Ikaguia/LWBR-WarForge | headers/header_operations.py | Python | unlicense | 292,424 | [
"VisIt"
] | 06b1a0c866afb65614df2a87570b068064e400c593af256a93567779c40215eb |
#!/usr/bin/env python
# -*- coding:UTF-8 -*-
# Copyright (c) 2018 Nicolas Iooss
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
... | fishilico/shared | python/cpu_model.py | Python | mit | 116,099 | [
"Amber",
"CRYSTAL"
] | 7df2ec41c87b7fc86cf04a19b8648269bb42c0bd4fe847a3a6cee415e1336af2 |
# $Id: nodes.py 5033 2007-03-21 19:51:22Z wiemann $
# Author: David Goodger <goodger@python.org>
# Copyright: This module has been placed in the public domain.
"""
Docutils document tree element class library.
Classes in CamelCase are abstract base classes or auxiliary classes. The one
exception is `Text`, for a text... | PatrickKennedy/Sybil | docutils/nodes.py | Python | bsd-2-clause | 60,239 | [
"VisIt"
] | 588961082101fed0e11f8fcf35dada9b50bbf16ff5d858152ddf51a11d91f047 |
#!/usr/bin/env python
# Author: Andrew Jewett (jewett.aij at g mail)
# http://www.chem.ucsb.edu/~sheagroup
# License: 3-clause BSD License (See LICENSE.TXT)
# Copyright (c) 2011, Regents of the University of California
# All rights reserved.
"""
bonds_by_type.py reads a LAMMPS data file (or an excerpt of... | ganzenmg/lammps_current | tools/moltemplate/src/bonds_by_type.py | Python | gpl-2.0 | 16,093 | [
"LAMMPS"
] | 05e7f914df0bce449ffbb985a57d94efc4427eadd45ea2a507f7c3a0ee24e55d |
#!/usr/bin/env python
"""Fetch GenBank entries for given accessions.
Adapted from https://www.biostars.org/p/66921/
USAGE:
cat <file> | python acc2gb.py <email> > <output>
where:
<file> is the name of a file containing accession numbers to download
<email> is the email address associated with your NCBI account
<out... | arlissc/phageParser | acc2gb.py | Python | mit | 1,018 | [
"Biopython"
] | afe51a7926eb670d216e0d7c020b88df40270450653dfda0897686824aa95285 |
# (c) 2015, Brian Coca <briancoca+dev@gmail.com>
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later v... | e-gob/plataforma-kioscos-autoatencion | scripts/ansible-play/.venv/lib/python2.7/site-packages/ansible/plugins/action/patch.py | Python | bsd-3-clause | 2,527 | [
"Brian"
] | 3d9212ed188f7e277fef7f0969f8f115c162d7d5d86e7e82acaf9401f602724f |
"""
network.py
~~~~~~~~~~
A module to implement the stochastic gradient descent learning
algorithm for a feedforward neural network. Gradients are calculated
using backpropagation.
"""
#### Libraries
# Standard library
import random
import json
import sys
# Third-party libraries
import numpy as np
class Network(ob... | nilabja10201992/NeuralNettoDetectHandWrittenDigits | src/network1.py | Python | gpl-3.0 | 7,573 | [
"Gaussian",
"NEURON"
] | 7ea986d871a1999aba0a1c45d9abda958d034799c464be2b49584f0303f37acf |
from datetime import timedelta
from django.test import TestCase
from django.utils import timezone
from model_mommy import mommy
from core.models import Visit
from registration.models import Member
from registration.utils import signin_member, AlreadySignedInError, member_signed_in, get_signed_in_members
class GetSi... | BridgeCityBicycleCoop/workstand | registration/tests/test_utils.py | Python | mit | 2,638 | [
"VisIt"
] | d7c409cd431c5cc745783662b772fcdcd964ff4d9b9f83cbd3634706aa83eb1c |
#!/usr/bin/env python
reader = vtk.vtkImageReader()
reader.ReleaseDataFlagOff()
reader.SetDataByteOrderToLittleEndian()
reader.SetDataExtent(0,63,0,63,1,93)
reader.SetFilePrefix("" + str(VTK_DATA_ROOT) + "/Data/headsq/quarter")
reader.SetDataMask(0x7fff)
rangeStart = 0.0
rangeEnd = 0.2
LUT = vtk.vtkLookupTab... | hlzz/dotfiles | graphics/VTK-7.0.0/Filters/Parallel/Testing/Python/TestImageStreamer.py | Python | bsd-3-clause | 1,595 | [
"VTK"
] | 183b9dff8b75632dd5bf61a71b6dea2f434ea7f3a20b393fa820221c3a5ee8ff |
#!/usr/bin/env python2
import os
import re
import natsort
import string
import netCDF4 as nc
import numpy as np
import pandas as pd
import cPickle as pickle
import matplotlib.pyplot as plt
import matplotlib.gridspec as gridspec
from matplotlib.cm import get_cmap
from matplotlib import style
from scipy import stats
fro... | rhyswhitley/savanna_iav | src/figures/trends/gpp_annual_trend_2alt.py | Python | cc0-1.0 | 9,771 | [
"NetCDF"
] | 3a8f1c7abd8d7e48f1bccaa2d5b1e77017cbc565ef1021c2518927533fcbafd9 |
import sys
import warnings
import numpy as np
from scipy import stats
from sklearn.covariance import EmpiricalCovariance
from sklearn.datasets.samples_generator import make_spd_matrix
from sklearn.externals.six.moves import cStringIO as StringIO
from sklearn.metrics.cluster import adjusted_rand_score
from sklearn.mi... | fabioticconi/scikit-learn | sklearn/mixture/tests/test_gaussian_mixture.py | Python | bsd-3-clause | 33,730 | [
"Gaussian"
] | a60e30c36bf4a169b837d6101148edc8c152ad6d256b91e4c425a58f4526accc |
tests=[
("python","Utils.py",{}),
("python","Torsions.py",{}),
("python","Pairs.py",{}),
("python","UnitTestDescriptors.py",{}),
]
longTests=[
]
if __name__=='__main__':
import sys
from rdkit import TestRunner
failed,tests = TestRunner.RunScript('test_list.py',0,1)
sys.exit(len(failed))
| strets123/rdkit | rdkit/Chem/AtomPairs/test_list.py | Python | bsd-3-clause | 313 | [
"RDKit"
] | 515e84f6fc253927eed2e84b14a137c571600071840a41e7e39b0e5dd97076cd |
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
This module defines the abstract base classes for battery-related classes.
Regardless of the kind of electrode, conversion or insertion, there are many
common definitions and properties, e.g., average voltage, capacity, e... | vorwerkc/pymatgen | pymatgen/apps/battery/battery_abc.py | Python | mit | 16,541 | [
"pymatgen"
] | 26af1b9523282d2ef915d0e5ee841b0e2adc7ae6e71d3eac90c6114bd81d4d5a |
import numpy as np
import ase
from pyemto.utilities import distort, rotation_matrix
from pyemto.examples.emto_input_generator import *
from pymatgen import Lattice
from ase.visualize import view
from ase.build import cut, make_supercell
import sys
find_primitive = False
make_supercell = None
coords_are_cart... | hpleva/pyemto | example_projects/hcp_equilibrium_volume/input.py | Python | mit | 3,359 | [
"ASE",
"pymatgen"
] | ef11a7c29fc13fd123043b6725d64b14d18d6f7e364c975c19d449ce61748e5e |
#
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may n... | pwcberry/climate | ocw/dataset_processor.py | Python | apache-2.0 | 44,758 | [
"NetCDF"
] | e6592ee5e38b66e4450fee81aad2bff0c0c850bfab1ca16662ec905414d6e9b4 |
# Copyright (C) 2009, Thomas Leonard
# See the README file for details, or visit http://0install.net.
from zeroinstall import _
from zeroinstall.support import tasks
from zeroinstall.injector import handler, download
gobject = tasks.get_loop().gobject
glib = tasks.get_loop().glib
version = '2.5-rc1-post'
class GUIH... | pombredanne/0install | zeroinstall/gui/gui.py | Python | lgpl-2.1 | 3,024 | [
"VisIt"
] | 4ae8e68f1507c90842e064750e6c64571d5c2fd2134ac258da1df476f7a1b8d1 |
import threading
import select
import time
import types
import socket
from DIRAC import gConfig, gMonitor, gLogger, S_OK, S_ERROR
from DIRAC.Core.DISET.private.TransportPool import getGlobalTransportPool
from DIRAC.Core.Utilities.ThreadPool import getGlobalThreadPool
from DIRAC.Core.Utilities.ReturnValues import isRe... | calancha/DIRAC | Core/DISET/private/MessageBroker.py | Python | gpl-3.0 | 15,381 | [
"DIRAC"
] | a892e18ac8a4668e7a32cc4a2b708c730db69074e3de008f22c95b7226da2af4 |
# -*- coding: utf-8 -*-
__author__ = 'Brian Rossa'
__email__ = 'br@f0cal.com'
__version__ = '0.0.1'
from .decorators import *
from .parserfactory import ParserFactory
def scan_and_run(package_name, base_parser=None):
parser = base_parser or __import__('argparse').ArgumentParser()
factory = ParserFactory(base... | brianthelion/plugnparse | plugnparse/__init__.py | Python | mit | 475 | [
"Brian"
] | 83a925487a67a461aa2ce35490dac207e756aeb73baa2600bd3537f700a65037 |
"""
Acceptance tests for the teams feature.
"""
import json
import random
import time
from dateutil.parser import parse
import ddt
from flaky import flaky
from nose.plugins.attrib import attr
from selenium.common.exceptions import TimeoutException
from uuid import uuid4
from ..helpers import get_modal_alert, EventsTe... | jbzdak/edx-platform | common/test/acceptance/tests/lms/test_teams.py | Python | agpl-3.0 | 82,519 | [
"VisIt"
] | a0ccbdb4f38dfab5744611f4166393fa1bd3ccd81a9a1ca14ba8446e6744443c |
#!/usr/bin/env python
from setuptools import setup
readme = open('README.rst').read()
setup(name='RPLCD',
version='1.3.0',
description='A Raspberry Pi LCD library for the widely used Hitachi HD44780 controller.',
long_description=readme,
author='Danilo Bargen',
author_email='mail@dbrgn.... | dbrgn/RPLCD | setup.py | Python | mit | 1,367 | [
"CRYSTAL"
] | 401f887a2005c683bb88d5ee6b21b64a4bf883c1b9ca85f447956028f96bc555 |
#! /usr/bin/env python
#
# IM - Infrastructure Manager
# Copyright (C) 2011 - GRyCAP - Universitat Politecnica de Valencia
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of t... | indigo-dc/im | test/unit/test_ctxt_agent.py | Python | gpl-3.0 | 11,044 | [
"Galaxy"
] | bda31c0a10baec4c736e39874aa716cc070af7a9b0d523689e304c62a15c5034 |
"""Make sure all the describe features are putting the right features in the
right place
"""
import mdtraj as md
import numpy as np
import pandas as pd
from mdtraj.testing import eq
from scipy.stats import vonmises as vm
import itertools
from msmbuilder.example_datasets import MinimalFsPeptide
from msmbuilder.feature_... | mpharrigan/mixtape | msmbuilder/tests/test_feature_descriptor.py | Python | lgpl-2.1 | 7,632 | [
"MDTraj"
] | 73423cbf71183fb21f14870bb5a5fc9be76102c1db4f5fe72d1007b9d592fe44 |
#!/usr/bin/env python
########################################################################
# File : dirac-admin-get-site-mask
# Author : Stuart Paterson
########################################################################
"""
Get the list of sites enabled in the mask for job submission
Example:
$ dirac-a... | DIRACGrid/DIRAC | src/DIRAC/Interfaces/scripts/dirac_admin_get_site_mask.py | Python | gpl-3.0 | 930 | [
"DIRAC"
] | 9ccacabe2159f6277432cb9d3def1056e2db295f4fe576b60a9ac38c8ed43809 |
#!/usr/bin/env python3
"""Test the deast module on short snippets of code."""
# Copyright © 2017 Timothy Pederick
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.o... | perey/deast | tests/test_snippets.py | Python | apache-2.0 | 2,540 | [
"VisIt"
] | b15baa00239b07e5bef778dddf8c07ed14c636694a00036f05a9a180dda0e905 |
# -*- coding: utf-8 -*-
from __future__ import unicode_literals
from django.conf import settings
from django.conf.urls import include, url
from django.conf.urls.static import static
from django.contrib import admin
from django.views.generic import TemplateView
urlpatterns = [
url(r'^f4add8918802.html$', Temp... | flipjack/tecnoservicio | config/urls.py | Python | bsd-3-clause | 5,780 | [
"VisIt"
] | ec548c2bd75c33753920a70f627393a4a828b688298bb06ced02c23f0e9f2df9 |
# encoding: utf-8
#! /usr/bin/env python
import logging
import io
from datetime import datetime
import unittest
from collections import namedtuple
import uuid
from opcua import ua
from opcua.ua.ua_binary import extensionobject_from_binary
from opcua.ua.ua_binary import extensionobject_to_binary
from opcua.ua.ua_binary... | iirob/python-opcua | tests/tests_unit.py | Python | lgpl-3.0 | 25,183 | [
"ASE"
] | 214b5373324e9d5ea64f11077096a84fe1252a631318cb2a06da430e8800a4de |
# -*- coding: utf-8 -*-
import os
import types
from os.path import join
from sys import executable
from stat import ST_MTIME
from docutils import nodes, utils
from docutils.parsers.rst.roles import set_classes
def mol_role(role, rawtext, text, lineno, inliner, options={}, content=[]):
n = []
t = ''
while ... | slabanja/ase | doc/ext.py | Python | gpl-2.0 | 4,281 | [
"ASE"
] | 6a08a06943a6576b16bf201df4514639745617e3ae41d65acf433e9ceeab1bb4 |
# -*- coding: utf-8 -*-
#
# Author: Travis Oliphant 2002-2011 with contributions from
# SciPy Developers 2004-2011
#
from __future__ import division, print_function, absolute_import
import warnings
import numpy as np
from scipy._lib.doccer import (extend_notes_in_docstring,
... | gertingold/scipy | scipy/stats/_continuous_distns.py | Python | bsd-3-clause | 220,936 | [
"CRYSTAL",
"Gaussian"
] | caf685e6cf5ced60e2519079c316c0081509a2212b90a4012bff5df451fc36da |
# disable missing docstring
#pylint: disable=C0111
import json
from lettuce import world, step
from nose.tools import assert_equal, assert_true # pylint: disable=E0611
from common import type_in_codemirror, open_new_course
from advanced_settings import change_value
from course_import import import_file, go_to_import
... | pelikanchik/edx-platform | cms/djangoapps/contentstore/features/problem-editor.py | Python | agpl-3.0 | 9,986 | [
"VisIt"
] | 196f7b2602c7b3383915b3bc84c593f33825c71aa669cad393562296373f81a0 |
# This Source Code Form is subject to the terms of the Mozilla Public
# License, v. 2.0. If a copy of the MPL was not distributed with this file,
# You can obtain one at http://mozilla.org/MPL/2.0/.
import sys
import traceback
from StringIO import StringIO
import re
import datetime
from urllib import urlencode
from co... | mozilla/pto | pto/apps/dates/views.py | Python | mpl-2.0 | 37,380 | [
"VisIt"
] | ad87e37f89d3fc11d485bb76593e1e26f97c1e5d9a11d58b7eb63d325785d2bc |
import matplotlib.pyplot as plt
import numpy as np
from scipy.optimize import curve_fit as cf
time_type = "$T_1$"
data_dir = "../Data/"
prefix = "2017-11-28-"
suffix = "-pulse-NMR-data"
T1_files = ["190345", "194315", "193909", "191139", "191848", "192518", "193141"]
sample_names = ["0.1M $CuSO_4$", "0.09M $CuSO_4$... | nathawkins/PHY451_FS_2017 | Pulsed_NMR/Analysis/20171128_plotting_tool_T1.py | Python | gpl-3.0 | 2,692 | [
"Gaussian"
] | 986c99ffd449cd63ff994b46808417b6d0cb939980cfca6f24adf0eb2076813f |
import pandas as pd
from sklearn.ensemble import RandomForestClassifier
from sklearn.ensemble import GradientBoostingClassifier
from sklearn.ensemble import BaggingClassifier
from sklearn.ensemble import AdaBoostClassifier
from sklearn.ensemble import ExtraTreesClassifier
from sklearn.neural_network import MLPClassifie... | rupakc/Kaggle-Compendium | Amazon Employee Access Challenge/access-baseline.py | Python | mit | 2,630 | [
"Gaussian"
] | a495f2be1957b1f1d3eecf1fe94fca0ea26f27f8ec194a6d3d7e113bd4cf1d1d |
""" This module contains various functions that are special cases
of incomplete gamma functions. It should probably be renamed. """
from __future__ import print_function, division
from sympy.core import Add, S, sympify, cacheit, pi, I
from sympy.core.function import Function, ArgumentIndexError
from sympy.core.sy... | Arafatk/sympy | sympy/functions/special/error_functions.py | Python | bsd-3-clause | 68,534 | [
"Gaussian"
] | e2ba20b09806fa72e1fe28e277748643ab759fe7422b043cf6612322b12c30ad |
from itertools import product
import numpy as np
from numpy.testing import assert_array_almost_equal
import pytest
from nPDyn.models import Model, Parameters, Component
from nPDyn.models.presets import lorentzian, gaussian, linear, delta
from nPDyn.models.builtins import (
modelPVoigt,
modelLorentzianSum,
... | kpounot/nPDyn | nPDyn/tests/models/test_convolutions.py | Python | gpl-3.0 | 1,413 | [
"Gaussian"
] | e9033bb102fbaaa7ae015d2664cdde2c9de7d5192fc3fb875b15155bd10db75d |
# force floating point division. Can still use integer with //
from __future__ import division
# other good compatibility recquirements for python3
from __future__ import absolute_import
from __future__ import print_function
from __future__ import unicode_literals
# This file is used for importing the common utilities ... | prheenan/BioModel | EnergyLandscapes/Inverse_Boltzmann/Python/Code/InverseBoltzmann.py | Python | gpl-2.0 | 6,876 | [
"Gaussian"
] | a3a3d6b83c40eac82b617479ec1a188debcd89d2a5e40f178a3591e02c0d6b15 |
###############################
# This file is part of PyLaDa.
#
# Copyright (C) 2013 National Renewable Energy Lab
#
# PyLaDa is a high throughput computational platform for Physics. It aims to make it easier to submit
# large numbers of jobs on supercomputers. It provides a python interface to physical input, suc... | pylada/pylada-light | src/pylada/physics/__init__.py | Python | gpl-3.0 | 3,041 | [
"CRYSTAL",
"VASP"
] | d266a17d18863bc7205072a52c7fef19b4acc2b36ca67ab3ccf51558cfbb2cec |
#!/usr/bin/env python
__author__ = 'Duane Edgington'
__copyright__ = '2013'
__license__ = 'GPL v3'
__contact__ = 'duane at mbari.org'
__doc__ = '''
Master loader for all CANON activities in September 2011 and beyound
Mike McCann and Duane Edgington and Reiko
MBARI 15 August 2013
@var __date__: Date of last s... | google-code-export/stoqs | loaders/CANON/loadCANON_september2011.py | Python | gpl-3.0 | 4,775 | [
"NetCDF"
] | 14c2583b242ec1c3d795e5e07357acd4cc968f0514a16e866c169ec84b98d029 |
import logging
import warnings
from Bio.pairwise2 import align, format_alignment
from Bio.Seq import Seq
from seqseek import Chromosome
from .exceptions import (MissingReferenceFlank,
InconsistentAlignment,
Unstrandable,
FlanksTooShort)
LOG... | 23andMe/stranding | stranding/stranding.py | Python | mit | 8,519 | [
"BLAST",
"Biopython"
] | 973b7f82fa6076a5b794f77ba4cf2971d229e85c3a63dcf70a55ed3c3ab307b9 |
#!/usr/bin/env python
import os
from twython import Twython
CONSUMER_KEY = os.environ.get('CONSUMER_KEY')
CONSUMER_SECRET = os.environ.get('CONSUMER_SECRET')
if CONSUMER_KEY is None or CONSUMER_SECRET is None:
raise ValueError(
"You must pass CONSUMER_KEY and CONSUMER_SECRET in the env")
twitter = Twyth... | rshk/ardomino-api | utils/twitter_auth.py | Python | bsd-3-clause | 1,329 | [
"VisIt"
] | 89779cc41b8cc39c27b80abc5c69a58517bd0bb4a015090ba7d3aa9b126fdf29 |
# $Id$
#
# Copyright (C) 2005-2006 greg landrum and Rational Discovery LLC
#
# @@ All Rights Reserved @@
# This file is part of the RDKit.
# The contents are covered by the terms of the BSD license
# which is included in the file license.txt, found at the root
# of the RDKit source tree.
#
from rdkit import Data... | rdkit/rdkit-orig | rdkit/DataStructs/VectCollection.py | Python | bsd-3-clause | 6,099 | [
"RDKit"
] | 7ed0ecea003c675d33a588830172ca1e16ecf0001a2bf4be9bbaa123fe202150 |
import time
import numpy as np
import scipy as scipy
# try:
# import qutip as qt
# except ImportError as e:
# import logging
# logging.warning('Could not import qutip, tomo code will not work')
import qutip as qtp
from pycqed.analysis_v2 import pytomo as csdp_tomo
comp_projectors = [qtp.ket2dm(qtp.tensor(... | DiCarloLab-Delft/PycQED_py3 | pycqed/analysis_v2/tomography_V2.py | Python | mit | 25,084 | [
"Gaussian"
] | eecc5275a7b9f06877cc09c6441749a79e5257a46406cee6316573576129a75b |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
This module provides some useful functions for dealing with magnetic Structures
(e.g. Structures with associated magmom tags).
"""
import warnings
import numpy as np
import os
import logging
from enum imp... | mbkumar/pymatgen | pymatgen/analysis/magnetism/analyzer.py | Python | mit | 48,744 | [
"VASP",
"pymatgen"
] | 3908ac757b62b3784544dcad5a9cf33992b626350a11a908dbe74846b223cafd |
"""VTK output functions.
Use the XML VTK format for unstructured meshes (.vtu)
See here for a guide: http://www.vtk.org/pdf/file-formats.pdf
Luke Olson 20090309
http://www.cs.uiuc.edu/homes/lukeo
"""
__docformat__ = "restructuredtext en"
__all__ = ['write_vtu','write_basic_mesh']
import xml.dom.minidom
import nu... | lukeolson/lukeo.cs.illinois.edu | files/vtk_writer.py | Python | mit | 16,276 | [
"ParaView",
"VTK"
] | 12ac0308e2e4298ca53d07099d10b79d24478038e6bc999c32edf3b45aa0129d |
from __future__ import print_function
import numpy as np
#1) Run dev-tools/mem_counter inside EPW/src
#2) compile UtilXlib/mem_counter.f90 with -D__DEBUG flag
#3) Run EPW
#4) grep ' allocating' epw1.out > alloc.txt
#5) grep 'deallocating' epw1.out > dealloc.txt
#6) Run this script after having changed the correct all... | QEF/q-e_schrodinger | dev-tools/mem_analyse.py | Python | gpl-2.0 | 1,780 | [
"EPW"
] | 8ccb93aca6fab241f83a154fdbef3571ab452a9e93eca77b4eb6fefe0eb4a39d |
"""Fabric deployment file to install genomic data on remote instances.
Designed to automatically download and manage biologically associated
data on cloud instances like Amazon EC2.
Fabric (http://docs.fabfile.org) manages automation of remote servers.
Usage:
fab -i key_file -H servername -f data_fabfile.py inst... | lpantano/cloudbiolinux | data_fabfile.py | Python | mit | 2,539 | [
"Galaxy"
] | 401105f9cfdafad08bcc03af023a5ae32804b0c52ffeb3769eef2a6a73d3618d |
# -*- coding: utf-8 -*-
"""
End-to-end tests for the LMS.
"""
from datetime import datetime
from flaky import flaky
from textwrap import dedent
from unittest import skip
from nose.plugins.attrib import attr
from bok_choy.promise import EmptyPromise
from ..helpers import (
UniqueCourseTest,
EventsTestMixin,
... | MakeHer/edx-platform | common/test/acceptance/tests/lms/test_lms.py | Python | agpl-3.0 | 44,711 | [
"VisIt"
] | ab05e8d53d71421c4d9512e4023c89e5fd7421692dc8cb5b7be802a96e665289 |
# This file is part of cclib (http://cclib.github.io), a library for parsing
# and interpreting the results of computational chemistry packages.
#
# Copyright (C) 2006-2014, the cclib development team
#
# The library is free software, distributed under the terms of
# the GNU Lesser General Public version 2.1 or l... | Clyde-fare/cclib | src/cclib/method/calculationmethod.py | Python | lgpl-2.1 | 1,708 | [
"cclib"
] | e8149cd858cc1d8830f0a351bb5337858f43b627c5ad20b5e309a747b9f60379 |
# -*- coding: utf-8 -*-
# vim: autoindent shiftwidth=4 expandtab textwidth=120 tabstop=4 softtabstop=4
###############################################################################
# OpenLP - Open Source Lyrics Projection #
# ------------------------------------------------------... | marmyshev/transitions | openlp/plugins/media/lib/mediatab.py | Python | gpl-2.0 | 4,916 | [
"Brian"
] | 98efe9d462936c3aaf4022fe5b2b7bf16b3815ee626633b4658e986019c77edc |
#!/usr/bin/python
# -*- coding: utf-8 -*-
"""
H. Déjean
copyright Naver Labs Europe 2018
READ project
mine a document (itemset generation)
"""
from __future__ import absolute_import
from __future__ import print_function
from __future__ import unicode_literals
import sys, os.path
sys.path.append(o... | Transkribus/TranskribusDU | TranskribusDU/spm/spmPageVerticalZones.py | Python | bsd-3-clause | 81,199 | [
"Gaussian"
] | 651e1b6cac8972aab8cc85da50fb894c7212bfc63114f265ad9ed7a3dba0c243 |
#!/usr/bin/env python
# -* coding: utf-8 -*
"""
This python script use Blue Obelisk's elements.xml file to create the
corresponding C++ header with atomic information.
The elements.xml file can be found at the official SVN repo:
http://svn.code.sf.net/p/bodr/code/trunk/bodr
"""
import sys
from xml.etree import E... | Luthaf/Chemharp | scripts/generate/periodic_table.py | Python | mpl-2.0 | 2,674 | [
"Chemfiles"
] | 0f08a927a26492f32736f5b3bfe1535ed36b647ebbe3fd13f4606cda9011d663 |
# -*- coding: utf-8 -*-
import scrapy
import urlparse
import re
from refly_scraper.items import ReferenceItem
class JsSpider(scrapy.Spider):
name = 'JavaScript'
excluded_path = ['MDN', 'Web technology for developers']
allowed_domains = ['mozilla.org']
visited = []
start_urls = (
'https://d... | Xuaps/refly_scraper | refly_scraper/spiders/js.py | Python | gpl-2.0 | 2,442 | [
"VisIt"
] | 31fda3f7be6f5501dce20cb93bb073fb1d546e776f2af484096e866d7d0064bc |
# -*- coding: utf-8 -*-
# vim: autoindent shiftwidth=4 expandtab textwidth=120 tabstop=4 softtabstop=4
###############################################################################
# OpenLP - Open Source Lyrics Projection #
# ------------------------------------------------------... | marmyshev/transitions | openlp/plugins/bibles/lib/__init__.py | Python | gpl-2.0 | 18,849 | [
"Brian"
] | eaf4c9ee230b85277e5b00c748f664394f9876aee12fb8feb6c30ff88e85c3c1 |
import os
import sys
import tempfile
import yaml
import zlib
import numpy as np
import pandas as pa
import simplejson as js
import subprocess as sb
from time import time,sleep
from os import path
from scipy.stats.mstats import mquantiles
from sklearn.feature_selection import SelectKBest, f_classif
from sklearn.lda imp... | binarybana/samcnet | exps/karen.py | Python | mit | 9,872 | [
"Gaussian"
] | 7e6d3c3e6a7a3074b95364a6963f9d66a9f5bb0452964a356b66a1c5e541a0f5 |
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