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#!/usr/bin/env python
'''
Fly ArduPlane in SITL
AP_FLAKE8_CLEAN
'''
from __future__ import print_function
import math
import os
import signal
import sys
import time
from pymavlink import quaternion
from pymavlink import mavextra
from pymavlink import mavutil
from common import AutoTest
from common import AutoTestT... | ArduPilot/ardupilot | Tools/autotest/arduplane.py | Python | gpl-3.0 | 143,785 | [
"Firefly"
] | ff588dd1ea08035863e3b4a201aabb95a69dcac321c6fca0ff1f0a374f5aa681 |
#!/usr/bin/env python
# Author: Andrew Jewett (jewett.aij at g mail)
# http://www.chem.ucsb.edu/~sheagroup
# License: 3-clause BSD License (See LICENSE.TXT)
# Copyright (c) 2011, Regents of the University of California
# All rights reserved.
"""
bonds_by_type.py reads a LAMMPS data file (or an excerpt of... | slitvinov/lammps-sph-multiphase | tools/moltemplate/src/bonds_by_type.py | Python | gpl-2.0 | 16,047 | [
"LAMMPS"
] | c3e225d1f43215dc7c67c29281cbc6a6edaf4de14bad0be304316dea79cf7454 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
from setuptools import setup, find_packages
with open('README.rst') as readme_file:
README = readme_file.read()
with open('HISTORY.rst') as history_file:
HISTORY = history_file.read()
REQUIREMENTS = [
'pyfaidx>=0.4.8.1', 'intervaltree>=2.1', 'tqdm>=4.7', 'to... | jrderuiter/pyim | setup.py | Python | mit | 1,962 | [
"pysam"
] | b1220e3ea770b0bd29ed52f46715f1d48488cd9c563cd9e98aaf044aef106d15 |
# Copyright (C) 2017,2018
# Max Planck Institute for Polymer Research
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the Licen... | espressopp/espressopp | src/integrator/PIAdressIntegrator.py | Python | gpl-3.0 | 28,817 | [
"ESPResSo",
"Gromacs"
] | 12e625c57e97ca1eb63a708a85a057a4bba9104f5fc20a4b8fdb29f76829d29c |
# (C) 2016, Markus Wildi, wildi.markus@bluewin.ch
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2, or (at your option)
# any later version.
#
# This program is distr... | jerryjiahaha/rts2 | scripts/u_point/u_point/script.py | Python | lgpl-3.0 | 16,314 | [
"VisIt"
] | 7eaec8ec3c4f1655841d541c22cf25ff2a788308df3dfc3985e9e52012d13bed |
import csv
def CommentStripper(iterator):
for line in iterator:
if line.startswith('# p'):
continue
if line.startswith('# GPAW'):
continue
if line.startswith(' 32'):
continue
if line.startswith(' 64'):
continue
yield li... | marcindulak/gpaw-on-aws | benchmark/plot.py | Python | bsd-2-clause | 4,378 | [
"GPAW"
] | bb8d9ed25db43bcb603be2814f9bdb3286bc552f7a45e1716b4ff7494472d5ce |
import sys
import glob
import pkgutil
import os
import fnmatch
from setuptools import setup
from pycmm.settings import DNASEQ_SLURM_MONITOR_PIPELINE_BIN
from pycmm.settings import DUMMY_TABLE_ANNOVAR_BIN
from pycmm.settings import MUTREP_SLURM_MONITOR_PIPELINE_BIN
from pycmm.settings import MUTREP_FAMILY_REPORT_BIN
fro... | jessada/pyCMM | setup.py | Python | gpl-2.0 | 4,017 | [
"pysam"
] | a4a7379daeb30fd06a642fb50d44153c97af00a21b5051671f37ccc62e7a18be |
"""
Caffe network visualization: draw the NetParameter protobuffer.
.. note::
This requires pydot>=1.0.2, which is not included in requirements.txt since
it requires graphviz and other prerequisites outside the scope of the
Caffe.
"""
from caffe.proto import caffe_pb2
import pydot
# Internal layer and ... | wangg12/caffe | python/caffe/draw.py | Python | bsd-2-clause | 7,389 | [
"NEURON"
] | 714173d8da44bf5bb48f4b1d242b4fb020141534a5254e21dfd591a89e159065 |
import re
import json
import copy
import datetime
from shutil import copyfile
from os import path
from collections import defaultdict
import click
from moebot import MwApi
import requests
from pyquery import PyQuery as pq
from .ship import ShipService
from lib.common.log import debug
from lib.common.config import CONF... | kcwikizh/kcwiki-scripts | lib/services/subtitle.py | Python | mit | 22,348 | [
"MOE"
] | 7b262e059bb17d34fa9b61651cb802727ce996d6eba28f76e20057d7daf25cb1 |
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not u... | jarifibrahim/climate | examples/knmi_to_cru31_full_bias.py | Python | apache-2.0 | 8,255 | [
"NetCDF"
] | a134c686d5edf762e5fb93419982997fb280b62bc44b991073bf7fe49a3dc7f5 |
#!/usr/bin/env python
#
# federico dot ferri at cern dot ch, 01.08.2013
#
import os
from optparse import OptionParser
import random
from string import lowercase, uppercase
import sys
import time
descr = """Fill up a fraction of the available disk space of a given mount
point with binary files of random content. The s... | ferriff/space-occupy | space_occu.py | Python | gpl-2.0 | 4,069 | [
"Gaussian"
] | 411a4b0e7907874848e578718d48e482dfe0833f9013490294b46f8afbf0fa37 |
# -*- coding: utf-8 -*-
# vim: autoindent shiftwidth=4 expandtab textwidth=120 tabstop=4 softtabstop=4
###############################################################################
# OpenLP - Open Source Lyrics Projection #
# ------------------------------------------------------... | marmyshev/item_title | openlp/core/ui/maindisplay.py | Python | gpl-2.0 | 26,303 | [
"Brian"
] | 84e072a566e27767b6c2ed2ba53a0796ddcb641cbd56f68c2bc98fa93d4d68ba |
# -*- coding: utf-8 -*-
from datetime import datetime, timedelta
from django.conf import settings
from django.core import mail
from django.core.files.storage import default_storage as storage
from django.utils import translation
import pytest
from mock import Mock, patch
from pyquery import PyQuery as pq
from olymp... | harry-7/addons-server | src/olympia/reviewers/tests/test_utils.py | Python | bsd-3-clause | 54,346 | [
"VisIt"
] | 34b878b301d63f9ef38c9052022e00feb4a24c7cf967ccb1f69da1009db1ec9b |
"""
Make the first figure. We show the following subfigures
1. Example of synthetic data
2. True transition matrix
3. True firing rates
"""
import os
import numpy as np
import matplotlib
from matplotlib.colorbar import Colorbar
matplotlib.rcParams.update({'font.sans-serif' : 'Helvetica',
'a... | slinderman/pyhsmm_spiketrains | experiments/make_figure1.py | Python | mit | 4,617 | [
"NEURON"
] | 2457e913dc0061410279e92070e0103f1094ac49c9ccbd0d34613d148770e610 |
"""This file contains code for use with "Think Bayes",
by Allen B. Downey, available from greenteapress.com
Copyright 2012 Allen B. Downey
License: GNU GPLv3 http://www.gnu.org/licenses/gpl.html
"""
"""This file contains class definitions for:
Hist: represents a histogram (map from values to integer frequencies).
P... | jgibson5/SoftwareSystems | hw03/thinkstats2.py | Python | gpl-3.0 | 51,751 | [
"Gaussian"
] | e777e6fdac62f354db5387c18fb95f9369b8c5c94ce6500aabf8c5453a4107c1 |
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not u... | tlby/mxnet | python/mxnet/contrib/text/embedding.py | Python | apache-2.0 | 30,929 | [
"VisIt"
] | c8851cd1e7c5ca8f3c2c0f86221c447dcf7c5b5482897cbbd33563b873fbba3f |
"""Transform a string with Python-like source code into SymPy expression. """
from __future__ import print_function, division
from .sympy_tokenize import \
generate_tokens, untokenize, TokenError, \
NUMBER, STRING, NAME, OP, ENDMARKER
from keyword import iskeyword
import ast
import re
import unicodedata
im... | drufat/sympy | sympy/parsing/sympy_parser.py | Python | bsd-3-clause | 32,979 | [
"VisIt"
] | d69a429d8bea390a8a26e8076dee9fe5d79de386a70f3f90a88ac19d72320d9e |
#!/usr/bin/env python
import numpy as np
from pylab import *
from gpaw.test import equal
output = True
############################# H2O ############################
filename = 'H2O'
data = loadtxt(filename+'-td'+'.dat')
be_t = data[:,0]
f_t = data[:,1]
data = loadtxt(filename+'-dos'+'.dat')
be_d = data[:,0]
f_d ... | qsnake/gpaw | gpaw/test/big/pes/PES_plot.py | Python | gpl-3.0 | 3,188 | [
"GPAW"
] | c985cbb7fab54cd062a851a646ab596c545615a9ec4914c7367cc0c3ae769776 |
"""
Train mnist, see more explanation at http://mxnet.io/tutorials/python/mnist.html
"""
import os
import argparse
import logging
logging.basicConfig(level=logging.DEBUG)
import mxnet as mx
import numpy as np
import pandas as pd
import matplotlib.pyplot as plt
def get_symbol_mlp(num_classes=10, **kwargs):
data = m... | factzero/kaggle | DigitRecognizer/train_mxnet_dr.py | Python | apache-2.0 | 4,077 | [
"Gaussian"
] | 8b1d16ddc7e921a4a9ff9443a713f827b54c0513f9ba0ba563b3c63550cc3cbc |
from enthought.mayavi.scripts import mayavi2
from enthought.tvtk.tools import mlab
from enthought.tvtk.api import tvtk
import scipy
import numpy
import thread
from enthought.mayavi.sources.vtk_data_source import VTKDataSource
from enthought.mayavi.filters.warp_scalar import WarpScalar
from enthought.mayavi.filters.filt... | fabrice-lecuyer/QuantLib-SWIG | Python/examples/visualization/plotspace.py | Python | bsd-3-clause | 2,969 | [
"Mayavi"
] | 37ce66b12a7d964941242025132e857afc6523dcca758eb630399fd8f1e2292c |
import os
import argparse
import subprocess
import shlex
import pandas
import string
import progress.bar
# ENHANCEMENT: use functionality from MultiQC for parsing. MultiQC is not currently written to allow convenient access.
# FEATURE: add bwa mem aligner
DEFAULT_THREADS = max(1, subprocess.os.cpu_count() // 2)
cla... | BennerLab/atg | atg/util/align.py | Python | gpl-3.0 | 31,783 | [
"BWA"
] | b418fd7112133e394b7e5b499120eca09af297d4520dbb4a15467a055c4b59c4 |
import os
import sys
from time import time
try:
from samcnet.mixturepoisson import *
import samcnet.mh as mh
from samcnet.lori import *
except ImportError as e:
sys.exit("Make sure LD_LIBRARY_PATH is set correctly and that the build"+\
" directory is populated by waf.\n\n %s" % str(e))
if ... | binarybana/samcnet | tests/poisson_synth.py | Python | mit | 5,077 | [
"Gaussian"
] | 38c04dbe4794ec84cc9a85adf0e0d8e705b587a48e985650ed5bd950aa984814 |
"""
network/conn.py
Network class methods to create connections
Contributors: salvadordura@gmail.com
"""
from __future__ import print_function
from __future__ import division
from __future__ import unicode_literals
from __future__ import absolute_import
from builtins import dict
from builtins import range
from b... | thekerrlab/netpyne | netpyne/network/conn.py | Python | mit | 35,333 | [
"NEURON"
] | b4e5426975aeae70a50fd15298bc29a28755213d7228687ad28e208c698a81da |
#!/usr/bin/env python
###########################################################################
## ##
## Language Technologies Institute ##
## Carnegie Mellon University ... | leahrnh/ticktock_text_api | galbackend_cnn.py | Python | gpl-2.0 | 22,117 | [
"Galaxy"
] | a3930e5200b9a085b9e153450affacca565a58d2b25fb80a7ad1dfca2f264775 |
import numpy as np
from mot.lib.cl_function import CLFunction, SimpleCLFunction
__author__ = 'Robbert Harms'
__date__ = "2014-06-19"
__license__ = "LGPL v3"
__maintainer__ = "Robbert Harms"
__email__ = "robbert@xkls.nl"
class ParameterPrior(CLFunction):
"""The priors are used during model sample, indicating the... | cbclab/MDT | mdt/model_building/parameter_functions/priors.py | Python | lgpl-3.0 | 9,769 | [
"Gaussian"
] | c0791504b229f14ef758805077f0deeb18bf59145527b26cc78fc9ae099ad174 |
# -*- coding: utf-8 -*-
#-----------------------------------------------------------------------------
# OpenModes - An eigenmode solver for open electromagnetic resonantors
# Copyright (C) 2013 David Powell
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU Gen... | DavidPowell/OpenModes | openmodes/simulation.py | Python | gpl-3.0 | 23,247 | [
"Mayavi",
"VTK"
] | 2d61f2b081c086865786dc76cbc968a3d0093c32fe3b000244124acedfb63279 |
#!/usr/bin/env python
#
# $File: statAlleleFreq.py $
#
# This file is part of simuPOP, a forward-time population genetics
# simulation environment. Please visit http://simupop.sourceforge.net
# for details.
#
# Copyright (C) 2004 - 2010 Bo Peng (bpeng@mdanderson.org)
#
# This program is free software: you can redistri... | BoPeng/simuPOP | docs/statAlleleFreq.py | Python | gpl-2.0 | 1,762 | [
"VisIt"
] | 048c462e64213f8ab1e24de3c90e176052173a1a5ce87033d27531b72e1c56b0 |
# -*- coding: utf-8 -*-
"""
Unit tests for instructor.api methods.
"""
import datetime
import ddt
import functools
import random
import pytz
import io
import json
import shutil
import tempfile
from django.conf import settings
from django.contrib.auth.models import User
from django.core import mail
from django.core.fil... | itsjeyd/edx-platform | lms/djangoapps/instructor/tests/test_api.py | Python | agpl-3.0 | 224,188 | [
"VisIt"
] | 5a7294477f7b8a96aadd7455f1b5bdc812d0cb7ea43a04a0a19669b22f63ebd7 |
import mdtraj as md
import mdtraj.io
ass = md.io.loadh("./Data/Assignments.Fixed.h5")["arr_0"]
# Get assignment data for first trajectory:
a = ass[0]
n_states = a.max() + 1
traj = md.load("./Trajectories/trj0.h5")
traj_chunks = [traj[a == i] for i in range(n_states)]
for i, t in enumerate(traj_chunks):
t.save(... | kyleabeauchamp/Caliber | src/traj_by_state.py | Python | gpl-2.0 | 341 | [
"MDTraj"
] | 00cf3cb15fa372049b8a99d8d688b385e2d08c755b26d976cb7693a6d66ae11f |
import os
import shutil
import pychemia
import tempfile
import unittest
class MyTestCase(unittest.TestCase):
def test_incar(self):
"""
Test (pychemia.code.vasp) [INCAR parsing and writing] :
"""
print(os.getcwd())
iv = pychemia.code.vasp.read_incar('tests/data/vasp_0... | MaterialsDiscovery/PyChemia | tests/test_code_vasp.py | Python | mit | 5,254 | [
"CRYSTAL",
"VASP"
] | 1827ed09928a6c1d0795b2ece771aa7415f6c2265a407f205d520c6897a8cf58 |
# Copyright 2013, Michael H. Goldwasser
#
# Developed for use with the book:
#
# Data Structures and Algorithms in Python
# Michael T. Goodrich, Roberto Tamassia, and Michael H. Goldwasser
# John Wiley & Sons, 2013
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of... | consultit/Ely | ely/direct/data_structures_and_algorithms/ch08/euler_tour.py | Python | lgpl-3.0 | 6,011 | [
"VisIt"
] | 3c77198f37c5ac60210ccc041edbd40903663b6981915313a52ed27e81e73e39 |
#!/usr/bin/env python
# -*- encoding: utf-8 -*-
from __future__ import division
import sys
import pysam
import BioClasses
def main():
tabixfile = pysam.Tabixfile( "/home/paul/bioinf/Data/global_ribosome_profiles.1-based.bed.gz", "r" )
region = "chr1:1187065-1187832"
region = "chr1:1190849-1190868"
region = "chr1... | polarise/Code | test_TabixResult.py | Python | gpl-2.0 | 574 | [
"pysam"
] | 50683a46c8457aabfa76ab7bf974ef5679906054b32d02241e3c528e11f44b42 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
#
# --- BEGIN_HEADER ---
#
# securepyro - a secure version of the external pyro server and proxy
# Copyright (C) 2003-2011 The MiG Project lead by Brian Vinter
#
# This file is part of MiG.
#
# MiG is free software: you can redistribute it and/or modify
# it under the terms ... | heromod/migrid | mig/grsfs-fuse/fs/core/network/rpc/securepyro.py | Python | gpl-2.0 | 9,631 | [
"Brian"
] | 83a122b3bff1f851e35bddbf9c5b476da9cf329c8be26e9b875a93d4e415dae7 |
# -*- coding: utf-8 -*-
#
# Copyright (c) 2020, the cclib development team
#
# This file is part of cclib (http://cclib.github.io) and is distributed under
# the terms of the BSD 3-Clause License.
"""Parser for Q-Chem output files"""
import itertools
import math
import re
import datetime
import numpy
from packaging.... | cclib/cclib | cclib/parser/qchemparser.py | Python | bsd-3-clause | 82,332 | [
"Gaussian",
"Q-Chem",
"cclib"
] | 6436fa8e20205503cfc1c7b17f2bea92268527ecb234ea94aed6ff572aa8e19e |
"""Generate self-contained HTML reports from MNE objects."""
# Authors: Alex Gramfort <alexandre.gramfort@inria.fr>
# Mainak Jas <mainak@neuro.hut.fi>
# Teon Brooks <teon.brooks@gmail.com>
#
# License: BSD (3-clause)
import base64
from io import BytesIO
from mne.proj import read_proj
import os
impor... | kambysese/mne-python | mne/report.py | Python | bsd-3-clause | 87,555 | [
"Mayavi"
] | 94b174f27fbdbcbb29b31d05e8256a16513a2bc6602cc792da69975bb1873c6d |
'''
Created on Jul 1, 2009
This module contains tests for the face recognition algorithms.
@author: bolme
'''
import unittest
import pyvision as pv
import numpy as np
#from optic_flow import *
from distance import *
import cv
import os.path
class _TestNormalize(unittest.TestCase):
def setUp(self):
... | tigerking/pyvision | src/pyvision/other/testsuite.py | Python | bsd-3-clause | 9,261 | [
"Gaussian"
] | 5c3ccca1b76daf30c6d0466c126ccaab91ae03c1162f15044c7e9cf0a9b1752a |
try:
import scipy
from scipy import optimize,sqrt
from scipy.optimize import leastsq
#from scipy.stats.stats import nanmedian,nanmean,_nanmedian
except ImportError:
print "Scipy cold not be loaded. Collapse_gaussfit may fail"
import numpy
from numpy import vectorize,zeros,exp,median,where,asarray,a... | dinossimpson/pyspeckit | pyspeckit/spectrum/collapse_gaussfit.py | Python | mit | 20,185 | [
"Gaussian"
] | 5a3b63642b0abd44001684e25c82ce1d01f672e029f9623dd054be17638e9838 |
#!/usr/bin/env python3
# Copyright 2010-2021 Google LLC
# Copyright 2015 Tin Arm Engineering AB
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.... | google/or-tools | ortools/constraint_solver/samples/vrpgs.py | Python | apache-2.0 | 6,542 | [
"VisIt"
] | 5e9fefa3b31288c386013e754eea5f170e3cf1be69c29a6d9ad8d9cf1a08b1ee |
#coding=utf-8
import json
from flask import Response
from flask import Flask
from flask import jsonify
from flask_restful import Resource, Api
from serializers import PageSerializer, ParaSerializer
from lxml import etree
from models import Book, Page,Paragraph
# import xmltodict
#flask app setup,and restfull
... | jjp9624022/indesignTeamWorker | server/app/views.py | Python | mit | 2,418 | [
"ParaView"
] | 0024570c2f82eeb493b1e84ddd2b5854569f3e58f151562d7701f16bee5444d4 |
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not u... | Huyuwei/tvm | python/tvm/hybrid/module.py | Python | apache-2.0 | 3,802 | [
"VisIt"
] | b5d5327c1ef8024f44e106da25158639c56ad16afce5b5fafd204c375b672f9f |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2021 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute it and/or modify
#... | lothian/psi4 | psi4/driver/util/__init__.py | Python | lgpl-3.0 | 913 | [
"Psi4"
] | ca58b88f75666413e8a12fa3178e15097c2e4c1e9fb3c4b203df28afb7ad3468 |
## sPARTA: small RNA-PARE Target Analyzer public version
## Updated: version-1.26 08/19/2017
## Author: kakrana@udel.edu
## Author: rkweku@udel.edu
## Copyright (c): 2016, by University of Delaware
## Contributor : Atul Kakrana
## Affilation : Meyers Lab (Donald Danforth Plant Science Cente... | BleekerLab/Solanum_sRNAs | snakepipelines/degradome/sPARTA.py | Python | mit | 139,373 | [
"Bowtie"
] | 0e444278ed5bb18d356183941401481e4bfc0e744ec31a653cdb5943d7d86e6e |
# This file is part of the myhdl library, a Python package for using
# Python as a Hardware Description Language.
#
# Copyright (C) 2003-2013 Jan Decaluwe
#
# The myhdl library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public License as
# published by t... | j-marjanovic/myhdl | myhdl/conversion/_analyze.py | Python | lgpl-2.1 | 45,567 | [
"VisIt"
] | 70e1823bc473405b9286a8d20a0a412de5d151bfb0398e7f04fc1e5ff625233d |
import time as ttime
from ophyd import (PVPositioner, EpicsSignal, EpicsSignalRO, EpicsMotor,
Device, Signal, PseudoPositioner, PseudoSingle)
from ophyd.utils.epics_pvs import set_and_wait
from ophyd.ophydobj import StatusBase, MoveStatus
from ophyd import Component as Cpt
from scipy.interpolate imp... | NSLS-II-SRX/ipython_ophyd | profile_xf05id1-noX11/startup/10-machine.py | Python | bsd-2-clause | 13,262 | [
"CRYSTAL"
] | 9a4f135b4790ba10d52279f8feccc4569071e7fe05c28d9061779e612aae22a8 |
#!/usr/bin/env python
"""
Extract information from a SfePy multi-time-step results file (HDF5
format) and/or linearize results with stored higher order DOFs.
For the linearization, the original input (problem description) file must
be specified as the first argument. Use the option --linearization below
to override li... | sfepy/sfepy | extractor.py | Python | bsd-3-clause | 7,136 | [
"VTK"
] | 67cc54355f07919b7620a3393e1e0dd470ff97ce06b1529e533fbb7c36014123 |
# -*- coding: utf-8 -*-
"""
End-to-end tests for LibraryContent block in LMS
"""
import ddt
import textwrap
from nose.plugins.attrib import attr
from ..helpers import UniqueCourseTest, TestWithSearchIndexMixin
from ...pages.studio.auto_auth import AutoAuthPage
from ...pages.studio.overview import CourseOutlinePage
fro... | wwj718/edx-platform | common/test/acceptance/tests/lms/test_library.py | Python | agpl-3.0 | 13,611 | [
"VisIt"
] | 41b4da3e15ce36cb2b0f3e9065372b85b347fad55820bcfe44f8c4cbac080db4 |
#! /usr/bin/env python
import nest
import nest.voltage_trace
import pylab
from active_worker.task import task
@task
def neuron_noise_task():
'''
Task Manifest Version: 1
Full Name: neuron_noise_task
Caption: One neuron with noise
Author: nest-initiative.org
Description: |
... | jakobj/UP-Tasks | NEST/neuron_noise_task/neuron_noise_task.py | Python | gpl-2.0 | 2,406 | [
"NEURON"
] | e4bf2a489e68c4f0d6bd596e94dffc2be01f637f9e2076cf22bf697900dfc38b |
# Imports
import os
import numpy as np
from .mapped_class import MappedClass
from .. import utils as bvpu
from ..options import config
try:
import bpy
is_blender = True
except ImportError:
is_blender = False
pass
class Action(MappedClass):
"""Layer of abstraction for armature-based actions (impor... | marklescroart/bvp | bvp/Classes/action.py | Python | bsd-2-clause | 8,993 | [
"VisIt"
] | c6bd17497c6137fde8599ff0af46cf87ee7c22b936218e321b724ea5ed644cd7 |
from __future__ import absolute_import
from __future__ import print_function
from typing import Any
from django.conf import settings
from django.core.management.base import BaseCommand
from confirmation.models import generate_realm_creation_url
class Command(BaseCommand):
help = """Outputs a randomly generated, 1... | vikas-parashar/zulip | zerver/management/commands/generate_realm_creation_link.py | Python | apache-2.0 | 1,023 | [
"VisIt"
] | aceb92a554935cde04ef48230fc61cafa655f12d6a20e04f2e05e1a9d90b5b19 |
# -*- coding: utf-8 -*-
"""
Created on Thu May 30 18:39:58 2013
@author: jpeacock-pr
"""
#==============================================================================
import matplotlib.pyplot as plt
import numpy as np
import os
import matplotlib.colorbar as mcb
import matplotlib.colors as colors
import mtpy.imagin... | MTgeophysics/mtpy | mtpy/imaging/plotpseudosection.py | Python | gpl-3.0 | 47,677 | [
"Gaussian"
] | 5045d58cb9cc64f2fe62070b45d095c789278da66a68de791a86353c1d7344d0 |
from dateutil.relativedelta import (MO, TH, TU)
from pandas import (DateOffset, Timestamp, date_range)
from pandas.tseries.holiday import (Holiday, nearest_workday, sunday_to_monday)
from pandas.tseries.offsets import Day
from pandas_market_calendars.market_calendar import (FRIDAY, MONDAY, THURSDAY, TUESDAY, WEDNESDAY... | rsheftel/pandas_market_calendars | pandas_market_calendars/holidays_us.py | Python | mit | 12,148 | [
"COLUMBUS"
] | b668c4bcf6f18d8baa285d6c4637fa3af9ed6009962c4783baa8c377534d9afc |
#!/usr/bin/env python
#
# Xiao Yu - Montreal - 2010
# Based on googlemaps by John Kleint
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your o... | mateuszmidor/GumtreeOnMap | src/pygeocoder/pygeocoder.py | Python | gpl-2.0 | 9,085 | [
"VisIt"
] | 41be48c32e515106d24c926447a52f1759f8af62daed88cdd8af918c4f96d32d |
#!/usr/bin/env python
from Bio import AlignIO
import sys
from optparse import OptionParser
from pprint import pprint
# Arguments #
usage = """ %prog -i -o align_in align_out"""
description = """Description: Use Biopython to convert the format of an alignment."""
epilog = """"""
version = "0.1"
parser = OptionParser(... | nyoungb2/misc_perl | blib/script/alignIO.py | Python | mit | 1,041 | [
"Biopython"
] | efb2d4618b309fa0f9c18ef56d5efa6dce45a975d6959360e60bad864fe7abc0 |
from test import test_support
import unittest
import codecs
import locale
import sys, StringIO
def coding_checker(self, coder):
def check(input, expect):
self.assertEqual(coder(input), (expect, len(input)))
return check
class Queue(object):
"""
queue: write bytes at one end, read bytes from th... | gusai-francelabs/datafari | windows/python/Lib/test/test_codecs.py | Python | apache-2.0 | 76,808 | [
"FEFF"
] | 6063e4fdbe5a3c48187478c3f1c386724bcd6987ba3a373a1c341c514f716fd7 |
########################################################################
# $HeadURL$
# File: ReqProxyHandler.py
# Author: Krzysztof.Ciba@NOSPAMgmail.com
# Date: 2013/06/04 13:18:41
########################################################################
""" :mod: RequestProxyHandler
=========================
... | avedaee/DIRAC | RequestManagementSystem/Service/ReqProxyHandler.py | Python | gpl-3.0 | 7,246 | [
"DIRAC"
] | 852b186a0854cf098477eeaece5d6a8f37c8b32a3aecae0089264a57c671d29f |
r"""*Trivial fixture tests for* ``sphobjinv``.
``sphobjinv`` is a toolkit for manipulation and inspection of
Sphinx |objects.inv| files.
**Author**
Brian Skinn (bskinn@alum.mit.edu)
**File Created**
20 Mar 2019
**Copyright**
\(c) Brian Skinn 2016-2022
**Source Repository**
http://www.github.com/bsk... | bskinn/sphobjinv | tests/test_fixture.py | Python | mit | 1,607 | [
"Brian"
] | 571355c6d8adf9e056f1a79c396cbaa49358a845eb5c386b8a053a5abc94dae1 |
#!/usr/bin/python
# Comments and/or additions are welcome (send e-mail to:
# robert.paton@chem.ox.ac.uk
#####################################
# Hess_to_Freq.py #
#####################################
### Written by: Rob Paton #########
### Last modified: Mar 27, 2017 ###
########################... | bobbypaton/Kinisot | kinisot/Hess_to_Freq.py | Python | mit | 3,241 | [
"Gaussian"
] | 35146bb23b87c08934bb12f4ae01eec42a116ea53df68e0dcf6ca39c49249f8a |
# coding=utf-8
import os
import logging
import inspect
import webapp2
from webob import exc
from blinker import signal
from datetime import datetime, timedelta
from urlparse import urlparse
from google.appengine.api import namespace_manager
from webapp2_extras.routes import RedirectRoute, PathPrefixRoute, MultiRoute
fr... | LighthouseUK/jerboa | jerboa/app.py | Python | lgpl-3.0 | 66,222 | [
"VisIt"
] | 565bce9d498096b1e43f3918eeb7bfe043f7c9e040ec5d0e94cbd55de0b239be |
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
# Copyright (C) 2017-2018 CIRCL Computer Incident Response Center Luxembourg (smile gie)
# Copyright (C) 2017-2018 Christian Studer
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU Affero General Public Li... | Rafiot/MISP | app/files/scripts/stix2/stix2misp.py | Python | agpl-3.0 | 71,253 | [
"Galaxy"
] | 8caf2edbdc5cb43f82cf8227febed83c21ceae2ac288e210f944d8a9cc986ec8 |
from __future__ import division, print_function
import sys
sys.path.append("../lib")
import logging
import theano
import theano.tensor as T
from theano import tensor
from blocks.bricks.base import application, lazy
from blocks.bricks.recurrent import BaseRecurrent, recurrent
from blocks.bricks import Random, Initia... | drewlinsley/draw_classify | draw/draw_CL_WORKING.py | Python | mit | 17,280 | [
"Gaussian"
] | 79c1235eac3eec01573be48c1ad7d32370c54686fb3605a2b010534753bbfecb |
def makeRunBWAalnScript(fastqFileListFileName, numThreads, qualityLimit, outputFilePath, referenceGenomeFileName, outputFileNameSuffix, scriptFileName):
# Make a script that will run bwn aln for paired-end sequencing data
fastqFileListFile = open(fastqFileListFileName)
scriptFile = open(scriptFileName, 'w+')
fa... | imk1/IMKTFBindingCode | makeRunBWAalnScript.py | Python | mit | 1,545 | [
"BWA"
] | 7908b838e1f00b5eceb5290178b2104cbd4c0712dc9b3a57fc04325d0b7cf8b2 |
"""
pyLDAvis Prepare
===============
Main transformation functions for preparing LDAdata to the visualization's data structures
"""
from __future__ import absolute_import
from past.builtins import basestring
from collections import namedtuple
import json
import logging
from joblib import Parallel, delayed, cpu_count
i... | napsternxg/pyLDAvis | pyLDAvis/_prepare.py | Python | bsd-3-clause | 17,027 | [
"scikit-bio"
] | 551742854471d1e07c3b698b10396897b1c389368a9e9f0780d983f42ef6af41 |
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not u... | larroy/mxnet | python/mxnet/ndarray/numpy/random.py | Python | apache-2.0 | 37,530 | [
"Gaussian"
] | ceb0019427fc63f8e7f3ba7f1f69153ae19652d14fc0321a38cf8cde1505fdeb |
#!/usr/bin/env python
""" load SubjectAttribute into OSDF using info from data file """
import os
import re
from cutlass.SubjectAttribute import SubjectAttribute
import settings
from cutlass_utils import \
load_data, get_parent_node_id, list_tags, format_query, \
write_csv_headers, values_to_node_dict, write_out... | JAX-GM/osdf_submit | nodes/subjectattribute.py | Python | gpl-3.0 | 5,438 | [
"VisIt"
] | d7cd5e3f72ead19625d399f778729d4e614b0f0a2b279965f933e5f1de8ddf9a |
# -*- coding: utf-8 -*-
from __future__ import unicode_literals
import time
# !! This is the configuration of Nikola. !! #
# !! You should edit it to your liking. !! #
# ! Some settings can be different in different languages.
# ! A comment stating (translatable) is used to denote those.
# ! There are two ways to... | wcmckee/hamiltoncomputerclub.org.nz | static/conf.py | Python | mit | 28,871 | [
"VisIt"
] | a6e6975e53bc466f801ecc688bb398255f475e6d019b55c0267f5187e863a952 |
#A* -------------------------------------------------------------------
#B* This file contains source code for the PyMOL computer program
#C* copyright 1998-2000 by Warren Lyford Delano of DeLano Scientific.
#D* -------------------------------------------------------------------
#E* It is unlawful to modify or remove ... | gratefulfrog/lib | python/chempy/tinker/realtime.py | Python | gpl-2.0 | 5,925 | [
"Amber",
"ChemPy",
"PyMOL",
"TINKER"
] | ff2375ed23e90a1bd64e153f73c0f3d8ae90d64729baacc9dbebd0f80c301f63 |
#
# Copyright (C) 2004-2008 Greg Landrum and Rational Discovery LLC
#
# @@ All Rights Reserved @@
# This file is part of the RDKit.
# The contents are covered by the terms of the BSD license
# which is included in the file license.txt, found at the root
# of the RDKit source tree.
#
import math
import sys
impor... | bp-kelley/rdkit | rdkit/Chem/Pharm3D/EmbedLib.py | Python | bsd-3-clause | 40,989 | [
"RDKit"
] | 908d874689dd9916d62a738843953185291ea780aaa34705dc2acc62ce07d66d |
# This file is part of the Minecraft Overviewer.
#
# Minecraft Overviewer is free software: you can redistribute it and/or
# modify it under the terms of the GNU General Public License as published
# by the Free Software Foundation, either version 3 of the License, or (at
# your option) any later version... | kevinwchang/Minecraft-Overviewer | overviewer_core/textures.py | Python | gpl-3.0 | 202,267 | [
"CRYSTAL"
] | 51e8caf516d13d806a404ed23ee24ea63d86dda7994e3678cd388b96159b6591 |
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not use ... | kun--hust/libcloud_with_cn | libcloud/common/google.py | Python | apache-2.0 | 26,980 | [
"VisIt"
] | d47365dcdbc49dcfeb4ab72efdacc862cce843727cee1522770f2f2a9f2c7c48 |
'''
The MIT License (MIT)
(c) Juergen Simon 2014 (juergen.simon@uni-bonn.de)
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Software without restriction, including without limitation the rights
to use, c... | meteo-ubonn/meanie3D | python/meanie3D/app/external.py | Python | mit | 6,347 | [
"VisIt"
] | e24eee7ec44f915c522768be5ca7ea5f28a8e07f5e01589d3d7536b7eac4b5ab |
# Copyright 2011 Rackspace
# Copyright (c) 2011 X.commerce, a business unit of eBay Inc.
# Copyright 2013 IBM Corp.
# All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License"); you may
# not use this file except in compliance with the License. You may obtain
# a copy of the License at
#
# ... | afrolov1/nova | nova/tests/network/test_manager.py | Python | apache-2.0 | 139,452 | [
"FEFF"
] | c181832b7002d75e96564d2ed2089ee69b64d373a99d3a9553cd9d5cb478b492 |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2021 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute it and/or modify
#... | jturney/psi4 | psi4/driver/procrouting/dft/dft_builder.py | Python | lgpl-3.0 | 19,692 | [
"Psi4"
] | 45e7ec02aa77f6c821edd74629ea6d35f180e0e70f2c39fca72d128e2aee29d2 |
"""
Artificial Intelligence for Humans
Volume 1: Fundamental Algorithms
Python Version
http://www.aifh.org
http://www.jeffheaton.com
Code repository:
https://github.com/jeffheaton/aifh
Copyright 2013 by Jeff Heaton
Licensed under the Apache License, Version 2.0 (the "License");
... | PeterLauris/aifh | vol1/python-examples/lib/aifh/error.py | Python | apache-2.0 | 1,418 | [
"VisIt"
] | 747d18213cd0d7bc5753d4ba1f0d50d657c9f8ccfd67574f547cf4726914e534 |
#!/usr/bin/python
from setuptools import setup
import sys, site, os
setup(name='fasticlip',
version='0.9.3',
description='Fully Automated and Standardized iCLIP (FAST-iCLIP) is a fully automated tool to process iCLIP data.',
#install_requires = ['numpy>=1.7', 'pandas>=0.14', 'matplotlib_venn>=0.... | ChangLab/FAST-iCLIP | setup.py | Python | gpl-2.0 | 744 | [
"Brian"
] | 5d0e3dbe966639c99146f65f3d39477edf3bb011b6612822b8cb27d2c2be3a44 |
#!/usr/bin/env python
# Copyright (c) 2001, Stanford University
# All rights reserved.
#
# See the file LICENSE.txt for information on redistributing this software.
#
# Authors:
# Brian Paul
""" graph.py
This module defines the GraphFrame class which is the top-level window
for creating/editing Chromium graphs.
"""... | excid3/chromium | mothership/tools/graph.py | Python | bsd-3-clause | 51,080 | [
"Brian"
] | 2bc1438304e8390db6c325392d609da881af2720a8d13344dd4aa10d20d7ce12 |
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
#
# Copyright 2012-2017 Romain Boman
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.... | rboman/progs | apps/octree/octree.py | Python | apache-2.0 | 12,207 | [
"VTK"
] | 5f04dbea9e8795fdef159452823d32c5e0a47844cf8b5164ec1f9b5a5043ea6b |
from django.core.urlresolvers import reverse
from django.utils.translation import ugettext_lazy as _
from horizon import exceptions
from horizon import forms
from horizon import messages
from crystal_dashboard.api import controllers as api
from crystal_dashboard.dashboards.crystal import exceptions as sdsexception
cl... | Crystal-SDS/dashboard | crystal_dashboard/dashboards/crystal/controllers/controllers/forms.py | Python | gpl-3.0 | 6,104 | [
"CRYSTAL"
] | 463de808c198d94c7a2788eb749253f22f91c02643d15b3d9a3aadc8d7e26626 |
from __future__ import print_function, division
import collections
from sympy.core.add import Add
from sympy.core.basic import Basic, Atom
from sympy.core.expr import Expr
from sympy.core.function import count_ops
from sympy.core.logic import fuzzy_and
from sympy.core.power import Pow
from sympy.core.symbol import Sym... | madan96/sympy | sympy/matrices/matrices.py | Python | bsd-3-clause | 160,652 | [
"DIRAC",
"Gaussian"
] | b20f3c70eb368549a8a1c88abefe7b110f073668dc2284210165da7e68e7db0e |
"""
# LiveUtils, a collection of simple utility functions for controlling Ableton Live
# Copyright (C) 2007 Rob King (rob@e-mu.org)
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; eithe... | jim-cooley/abletonremotescripts | remote-scripts/samples/Twister Ableton Script v1.2.2/_Mono_Framework/LiveUtils.py | Python | apache-2.0 | 7,425 | [
"VisIt"
] | c63e9e4546f133bb2764e0982538975a3a5987a45a8e8f323c79670b7651df61 |
# $Id$
#
# Copyright (C) 2006 greg Landrum
#
# @@ All Rights Reserved @@
# This file is part of the RDKit.
# The contents are covered by the terms of the BSD license
# which is included in the file license.txt, found at the root
# of the RDKit source tree.
#
from rdkit import RDConfig
import unittest,sys,os,ma... | soerendip42/rdkit | rdkit/Chem/FeatMaps/UnitTestFeatMap.py | Python | bsd-3-clause | 10,817 | [
"RDKit"
] | 9835dc99fd27b7b359bca99fb5ae00859277ae7a4a4fa762cd48cb2987fd1344 |
import cryspy.const
import cryspy.blockprint
import cryspy.hash
import cryspy.numbers
import cryspy.geo
import cryspy.crystal
import cryspy.fromstr
import cryspy.niceprint
import cryspy.tables
import cryspy.blender
import cryspy.povray
import cryspy.lab
import cryspy.utils
| tobias-froehlich/cryspy | cryspy/__init__.py | Python | gpl-3.0 | 274 | [
"CRYSTAL"
] | c7eafdaa38d7a794d4d5c8f282fc42b23577bba687f8ae109ce5c90c6daeb441 |
"""Provide the Reddit class."""
import os
try:
from update_checker import update_check
UPDATE_CHECKER_MISSING = False
except ImportError: # pragma: no cover
UPDATE_CHECKER_MISSING = True
from prawcore import (Authorizer, DeviceIDAuthorizer, ReadOnlyAuthorizer,
Redirect, Requestor, ... | voussoir/praw | praw/reddit.py | Python | gpl-3.0 | 18,566 | [
"VisIt"
] | d70dd1ed802f53a6643eb19fb7907925c4810f3d6cdccb0f29cd991ee77904e1 |
import numpy as np
import os.path
import DataMorphing as dm
import DataAnalysis as da
def load_target_and_cg_rdf(target_filename, cg_filename, averaging='yes'):
""" Loads two preprocessed rdf files (named rdf_* for the CG ones, and rdf.* for the target ones) and
provides difference and squared difference values. ... | djgroen/FabSim | python/lib/LammpsIO.py | Python | lgpl-3.0 | 11,904 | [
"LAMMPS"
] | 4a0108046e4138e981d6d1dc01df3ff9e5dc599e842bd16440d8e334e7090505 |
# Copyright 2015 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | meteorcloudy/tensorflow | tensorflow/python/ops/gradients_impl.py | Python | apache-2.0 | 44,676 | [
"VisIt"
] | 72ddcc4e9dbaeaa3b878e9733b57edc56bd953006fd1dcbacf4314d41f2385fd |
#!/usr/bin/python
# -*- coding: utf-8 -*-
# ---------------------------------------------------------------------
# Copyright (c) 2012 Michael Hull.
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions
# are m... | mikehulluk/morphforge | src/morphforge/core/mfrandom.py | Python | bsd-2-clause | 2,492 | [
"NEURON"
] | f49f151a6aa69c3beada9588eeafc1fef15fc094f905637932d1b1a66ae8e01b |
# Copyright (c) 2012-2014, James Hensman
# Licensed under the BSD 3-clause license (see LICENSE.txt)
from .posterior import Posterior
from ...util.linalg import jitchol, tdot, dtrtrs, dpotri, pdinv
import numpy as np
from . import LatentFunctionInference
log_2_pi = np.log(2*np.pi)
class DTC(LatentFunctionInference):
... | ptonner/GPy | GPy/inference/latent_function_inference/dtc.py | Python | bsd-3-clause | 5,661 | [
"Gaussian"
] | 554d0ce2b0dbabe89bba8ff6089cb7c782ed1b9b7583746989baacffc50b8cbb |
# -*- coding: utf-8 -*-
# Copyright 2022 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or... | googleapis/python-service-control | tests/unit/gapic/servicecontrol_v1/test_service_controller.py | Python | apache-2.0 | 55,629 | [
"Octopus"
] | 3d663d6714448a6fc43207fb04b9cf45c332ddd949fad27bcbb1ffd8f8f9490d |
#!/usr/bin/env python3
# Copyright 2021 Stanford University
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicab... | StanfordLegion/legion | language/test.py | Python | apache-2.0 | 26,571 | [
"VisIt"
] | 09f00c128e445b25692dda9bc0c8aaac38493ee743b62124b8e191843268732f |
# Copyright (c) 2012-2014, Max Zwiessele, James Hensman
# Licensed under the BSD 3-clause license (see LICENSE.txt)
__doc__ = """
Inference over Gaussian process latent functions
In all our GP models, the consistency propery means that we have a Gaussian
prior over a finite set of points f. This prior is
math:: N(... | befelix/GPy | GPy/inference/latent_function_inference/__init__.py | Python | bsd-3-clause | 4,148 | [
"Gaussian"
] | e2693d6c6393f123135790999b1aa97270f7e9b6ff5f44688f5795907922650b |
# Copyright 2015 Google Inc. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or a... | panmari/tensorflow | tensorflow/contrib/distributions/python/kernel_tests/gaussian_test.py | Python | apache-2.0 | 2,627 | [
"Gaussian"
] | d484411f708425b6e794bf19ab77ae64e0dcfaf9411b7c53a835da993428b81b |
# -*- coding: utf-8 -*-
import glob as glob
import os
from natsort import natsorted
import bibtexparser as bt
def parse_bib(f):
bib_database = bt.bparser.BibTexParser(common_strings=True).parse_file(open(f))
bd = bib_database.entries[0]
s = "<span style=\"font-size:1.0em;\">**"+bd['title']+"**</span><br>... | delton137/delton137.github.io | build_bibliography.py | Python | mit | 7,322 | [
"Brian",
"CRYSTAL"
] | 720a0ef69e4bafa164a9297e9f2f1060d40ed4fa21e3d3cb683272d0a7428983 |
"""
Project
FPGA-Imaging-Library
Design
Threshold
Function
Convert gray-scales image to binary images.
Module
Software simulation.
Version
1.0
Modified
2015-05-15
Copyright (C) 2015 Tianyu Dai (dtysky) <dtysky@outlook.com>
This library is free software; you can redistribute it and/or
modify it under the terms of... | jaechoon2/FPGA-Imaging-Library | Point/Threshold/SoftwareSim/sim.py | Python | lgpl-2.1 | 3,137 | [
"MOE"
] | 23ae5113a12aadb4e6e44b254767e1b26604208f4ac8df12dfe613246c2df279 |
def removeLFNs_subjobs(job,sublist):
ds = LHCbDataset()
if type(job.backend)==Dirac:
for sjid in sublist:
sj = job.subjobs(sjid)
if sj.status == 'completed':
for of in sj.outputfiles:
try:
the_lfn = of.lfn
... | pseyfert/gangascripts | removeremote.py | Python | gpl-2.0 | 2,951 | [
"DIRAC"
] | 02641d845c1fd4d70a652262db04f859aeeb881f8616ec91c024b3be37ab218e |
"""Populate the database with fake data."""
import random
from django.core.management import call_command
from django.core.management.base import BaseCommand
from django.db import transaction
import profiles.models
import users.models
import visits.models
from profiles.factory import StudentFactory, TutorFactory, Tu... | oser-cs/oser-website | core/management/commands/populatedb.py | Python | gpl-3.0 | 4,619 | [
"VisIt"
] | 53ad2f5d8c060e7e0063b908867908b24362343d0886befb7f26f6cf78b162ea |
# Copyright 2008 Michiel de Hoon.
# Revisions copyright 2009 Leighton Pritchard.
# Revisions copyright 2010 Peter Cock.
# All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
"""Code t... | zjuchenyuan/BioWeb | Lib/Bio/Emboss/Primer3.py | Python | mit | 5,455 | [
"Biopython"
] | c9f5ddb00aac9785e062534351be2b2d685491ce019d4cbcea8428c23fc9f682 |
"""Need type, Plot() and ModelUpdate()."""
import wx
import vtk
import numpy
import os
# from vtk.wx.wxVTKRenderWindowInteractor import wxVTKRenderWindowInteractor
# use Enthought version copied from svn/enthought/src/lib/enthought/pyface/tvtk/wxVTKRenderWindowInteractor.py
# which fixes bug crashing wxVTKRenderWindow... | cliburn/flow | src/plugins/visual/ThreeDFrame/Main.py | Python | gpl-3.0 | 17,406 | [
"VTK"
] | 0e96814912ddf04956b83726c55fe2ca70ffb9c2562fe392e2763c075b880414 |
# =============================================================================
# Federal University of Rio Grande do Sul (UFRGS)
# Connectionist Artificial Intelligence Laboratory (LIAC)
# Renato de Pontes Pereira - rppereira@inf.ufrgs.br
# =============================================================================
... | renatopp/liac | samples/models/samples_gmm.py | Python | mit | 2,654 | [
"Gaussian"
] | 58813e46ca3a7e4bf39e2a6a033e9c9021c4ecf8f7a1009fdab648dfed1435ef |
"""
Unit page in Studio
"""
from bok_choy.page_object import PageObject
from bok_choy.promise import EmptyPromise, Promise
from . import BASE_URL
from .container import ContainerPage
class UnitPage(PageObject):
"""
Unit page in Studio
"""
def __init__(self, browser, unit_locator):
super(Uni... | hkawasaki/kawasaki-aio8-1 | common/test/acceptance/pages/studio/unit.py | Python | agpl-3.0 | 3,855 | [
"VisIt"
] | caea710fd4b63231fe0a70083a54319c24b4b6ee01274113404668fa45bd3d7b |
#
# gaussInterp_slow routine -- Gaussian weighted smoothing in lat, lon, and time
#
# Based on Ed Armstrong's routines. Pure python implementation.
#
#
# Gaussian weighting = exp( vfactor * (((x - x0)/sx)^2 + ((y - y0)/sy)^2 + ((t - t0)/st)^2 ))
#
# where deltas are distances in lat, lon and time and sx, sy, st are... | dataplumber/nexus | climatology/clim/gaussInterp_slow.py | Python | apache-2.0 | 6,365 | [
"Gaussian"
] | 5ab05a75254981af13339754d8657727f7b51069451e585aabe72ed77532a55c |
#!/usr/bin/env python
import sncosmo
import numpy as np
import scipy
import sources
import astropy.modeling
import astropy.cosmology
"""
Introduce Galaxy and Universe classes that may exist elsewhere
already but are included here for the demonstration of the
proposed usage. Note that the galaxy and universe are re... | rbiswas4/SNsims | snsims_previous/snsims/testUniverse.py | Python | mit | 14,004 | [
"Galaxy"
] | 430e5f85353f14c11f5f86357dee901b04f51542ec039a8fcac658df351cca42 |
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