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import hashlib
import numpy
import os
import random
import scipy.stats
import shutil
import subprocess
from contextlib import closing
from django.test import TestCase, tag
from unittest.mock import MagicMock
from data_refinery_common.utils import get_env_variable
from data_refinery_common.models import (
Computat... | data-refinery/data_refinery | workers/data_refinery_workers/processors/test_salmon.py | Python | bsd-3-clause | 29,174 | [
"Bioconductor"
] | d4cba489dc4eccd6ca40c411a388882670991b1ac0b5738e56e55f1e22d8f1b4 |
# Copyright 2018 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, ... | lablup/sorna-repl | vendor/benchmark/minigo/mcts.py | Python | lgpl-3.0 | 12,327 | [
"VisIt"
] | 966b46ef0b4924cb3fd18d94b6c3a407d09d5c6460407f8476cc6513059c223d |
from setuptools import setup, find_packages
scripts = [
'annotations/gencode_annotate_utrs_5p_3p.pl',
'mirna/miR_splitter.py',
'clipseq/barcode_collapse.py',
'clipseq/barcode_collapse_pe.py',
'clipseq/fix_scores.py',
'clipseq/run_kasey.py',
'clipseq/kmer_extractor.py',
'clipseq/perform... | YeoLab/gscripts | setup.py | Python | mit | 3,208 | [
"HTSeq",
"pysam"
] | 3a06fa21536fa8a18092a2fc2abdfc63270beea68744ab6dff67d23d1f46486e |
""" Frontend to FTS3 MySQL DB. Written using sqlalchemy
"""
# We disable the no-member error because
# they are constructed by SQLAlchemy for all
# the objects mapped to a table.
# pylint: disable=no-member
import datetime
import errno
from sqlalchemy.orm.exc import NoResultFound
from sqlalchemy.exc import SQLAlchemy... | DIRACGrid/DIRAC | src/DIRAC/DataManagementSystem/DB/FTS3DB.py | Python | gpl-3.0 | 27,414 | [
"DIRAC"
] | c86032ddf602ce4a0f6fd506fcfa823c9c0ec61b7118e38c92ca3c737ec46418 |
# -*- coding: utf-8 -*-
"""Multivariate Normal and t distributions
Created on Sat May 28 15:38:23 2011
@author: Josef Perktold
TODO:
* renaming,
- after adding t distribution, cov does not make sense for Sigma DONE
- should mean also be renamed to mu, if there will be distributions
with mean != mu... | bashtage/statsmodels | statsmodels/sandbox/distributions/mv_normal.py | Python | bsd-3-clause | 38,674 | [
"Gaussian"
] | d3e3c0536807c0afa3b7c67a0d3508953d1f6d8d092dec4bbf717d570cd08478 |
"""
MultiVolumeVisualizationMIP
:Authors:
Berend Klein Haneveld
"""
from MultiVolumeVisualization import MultiVolumeVisualization
from MultiVolumeVisualization import CreateEmptyFunctions
from MultiVolumeVisualization import CreateRangeFunctions
from core.decorators import overrides
from PySide.QtGui import QLabel
fr... | berendkleinhaneveld/Registrationshop | ui/visualizations/MultiVolumeVisualizationMIP.py | Python | mit | 2,351 | [
"VTK"
] | a7f5fdde14902836e0df4464d0a2bbe7e3bcc485a9b094a971b2ef708427412d |
#
# QE.py
#
# Interface to Quantum ESPRESSO (http://www.quantum-espresso.org)
#
# Copyright (c) 2014 Terumasa Tadano
#
# This file is distributed under the terms of the MIT license.
# Please see the file 'LICENCE.txt' in the root directory
# or http://opensource.org/licenses/mit-license.php for information.
#
import n... | ttadano/ALM | tools/interface/QE.py | Python | mit | 30,917 | [
"CRYSTAL",
"ESPResSo",
"Quantum ESPRESSO"
] | d3f364d2fa1941db8168fcb9580a7d7e8d4f46f09680c75faacd6c25dda9ff4b |
#
# Copyright 2018 Analytics Zoo Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to... | intel-analytics/analytics-zoo | pyzoo/zoo/examples/orca/learn/tf/inception/inception.py | Python | apache-2.0 | 11,693 | [
"ORCA"
] | 09318827279b001dd978a0d06f677563da81fcb5a657eb2508d07985c41eaac2 |
# -*- coding: UTF-8 -*-
#This file is part of pyAlienFX.
#
# pyAlienFX is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
#... | AndroidMarv/pyalienfx | AlienFX/AlienFXComputers.py | Python | gpl-3.0 | 38,192 | [
"VisIt"
] | 061d7d91a0fb9577c284913329a217419194f81b6e2a63437af539277ba1abf9 |
'''
Created on Jul 19, 2011
@author: sean
'''
from __future__ import print_function
from . import Visitor
import sys
import _ast
from warnings import warn
if sys.version_info.major < 3:
from StringIO import StringIO
else:
from io import StringIO
class Indentor(object):
def __init__(self, printer, inden... | diana-hep/femtocode | lang/femtocode/thirdparty/meta/asttools/visitors/print_visitor.py | Python | apache-2.0 | 5,036 | [
"VisIt"
] | fa67187467ae6371058c4f288213b5314e19841933aae62e3aaa32b9224110d2 |
import sys, glob, os, subprocess
if sys.version_info < (2, 6):
raise SystemExit("""matplotlib and the basemap toolkit require Python 2.6 or later.""")
from distutils.dist import Distribution
from distutils.util import convert_path
from distutils import ccompiler, sysconfig
# Do not require numpy for just queryin... | jenshnielsen/basemap | setup.py | Python | gpl-2.0 | 5,944 | [
"NetCDF"
] | c6b7c0f6b08cfc8e796be67afad6ad4fa39ae8ad73bea2894a1ef69b995cedee |
# -*- coding: utf-8 -*-
# Copyright 2014 Matt Austin
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
# http://www.apache.org/licenses/LICENSE-2.0
# Unless required by applicable law or ... | mattaustin/gaussian | gaussian/feeds.py | Python | apache-2.0 | 2,495 | [
"Gaussian"
] | 396a4596f95c26b73c509c4e3da8144a52354a5a8d4b890ff9b8cc5a9b90f7b0 |
import os
import sqlite3
import om10
import pandas as pd
import numpy as np
import gzip
import shutil
import copy
import json
from lsst.utils import getPackageDir
import lsst.sims.utils.htmModule as htm
from lsst.sims.photUtils import Bandpass, BandpassDict, Sed, getImsimFluxNorm
from lsst.sims.photUtils import calcSNR... | LSSTDESC/Twinkles | python/desc/twinkles/validation/validate_ic.py | Python | mit | 57,531 | [
"Galaxy",
"VisIt"
] | 20e0a764e48317db62b493656bf2aec509f2d68824fdb16b8754a4154631a9ef |
#
# This source file is part of appleseed.
# Visit http://appleseedhq.net/ for additional information and resources.
#
# This software is released under the MIT license.
#
# Copyright (c) 2019 Jonathan Dent, The appleseedhq Organization
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# ... | dictoon/blenderseed | translators/objects/mesh.py | Python | mit | 17,167 | [
"VisIt"
] | d9b9ec170754e695fc2b91473237b98f8933dd0db4bd3a8c16ec3247c8877cd4 |
'''
Created on 2012-11-13
A script to average CESM monthly data to create a monthly climatology.
This script does not rely on PyGeode but instead uses netCDF4 and numpy directly.
@author: Andre R. Erler
'''
## imports
# numpy
from numpy import arange, array, zeros
import os, re, sys
# import netCDF4-python and adde... | aerler/WRF-Tools | Python/archive/avgCESM.py | Python | gpl-3.0 | 6,217 | [
"NetCDF"
] | a9e41273113b0cf408f72faf516ced281598717f60909b489b2b7a86705e1db5 |
# -*- coding: utf-8 -*-
# vim: autoindent shiftwidth=4 expandtab textwidth=120 tabstop=4 softtabstop=4
###############################################################################
# OpenLP - Open Source Lyrics Projection #
# ------------------------------------------------------... | marmyshev/item_title | openlp/core/ui/media/playertab.py | Python | gpl-2.0 | 13,172 | [
"Brian"
] | 1b0c1e177b2aa5360594377c18c7ebcfae49e0754250c380087cfab301adb562 |
import numpy
import pylab
import math
from math import degrees, atan2, radians, cos, sin
import random
import scipy.ndimage
num_type = numpy.float32
def normalize_volume(array):
''' Makes a new array with total density of 1 and the same shape as array '''
array /= numpy.sum(array)
def normalize_max(array):
... | cuauv/software | locator/density.py | Python | bsd-3-clause | 5,402 | [
"Gaussian"
] | 65317054e6f17712aa892e3d1acbc2411b274890277825c38c8a110286c1f68b |
import pdb
import gc
import numpy as np
from numpy import zeros
from numpy import shape
import cPickle as pickle
#from astropy.cosmology import FlatLambdaCDM
from astropy.cosmology import Planck15 as cosmo
import astropy.units as u
from scipy.ndimage.filters import gaussian_filter
from scipy.optimize import curve_fit
i... | marcoviero/Utils | utils.py | Python | mit | 36,940 | [
"Gaussian"
] | 7523af53b0a352139dd13ede0a4f578a6c1d64f54ef51806538338171e1877d9 |
#!/usr/bin/env python
from instagram.client import InstagramAPI
from ConfigParser import SafeConfigParser
import argparse
import datetime
import logging
config_parser = SafeConfigParser()
config_parser.read('config')
arg_parser = argparse.ArgumentParser(description='Auto-like my GF\'s Instagram')
arg_parser.add_argu... | janson123/Like-My-GF | like_my_gf.py | Python | mit | 3,030 | [
"VisIt"
] | 144061d1eebc10f721b6a031ddd09104fcf966ef207bb1efde7eadc38124ba1f |
# -*- coding: utf-8 -*-
# Author: Óscar Nájera
# License: 3-clause BSD
"""
==================
RST file generator
==================
Generate the rst files for the examples by iterating over the python
example files.
Files that generate images should start with 'plot'
"""
from __future__ import division, print_functi... | RPGOne/Skynet | scikit-learn-0.18.1/doc/sphinxext/sphinx_gallery/gen_rst.py | Python | bsd-3-clause | 20,630 | [
"Mayavi"
] | 998e63a532c0a2eae3b33bdb7f2d6b5d9cd962bb44b2c6ccb1a49a452a3dc72c |
"""Defines the App class."""
from typing import ( # pylint: disable=unused-import
Any, Callable, Generator, List, Optional, Set, Tuple, Union, Dict, Sequence
)
import os
import json
import itertools
import shutil
from collections import namedtuple, defaultdict
from subprocess import Popen, PIPE, STDOUT, check_out... | jwkvam/conex | bowtie/_app.py | Python | mit | 38,439 | [
"Bowtie"
] | 167bd30e896d6a9434c17a2bb4f5caa168d51258e97f341c685a4831f26ebd7c |
#!/usr/bin/env python -i
# preceding line should have path for Python on your machine
# demo.py
# Purpose: illustrate use of many library interface commands
# Syntax: demo.py
# uses in.demo as LAMMPS input script
from __future__ import print_function
import sys
# parse command line
argv = sys.argv
if len(... | akohlmey/lammps | python/examples/demo.py | Python | gpl-2.0 | 1,406 | [
"LAMMPS"
] | b3845e030ddc31fef381ede6765b14200dfb76fcab3fdce439b76a0747e1ba82 |
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2007-2008 Brian G. Matherly
# Copyright (C) 2008 Gary Burton
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either v... | Forage/Gramps | gramps/gen/plug/menu/_family.py | Python | gpl-2.0 | 1,791 | [
"Brian"
] | 214c1e6d430d32ce779e82b2fcfc729d448287021385b215857234370526e0e3 |
"""
Filename: eigen_markov.py
Author: Daisuke Oyama
This file contains some routines specialized for stochastic (Markov) matrices.
stoch_eig : returns the stochastic eigenvector (stationary distribution)
of an irreducible stochastic matrix P, i.e., the stochastic vector x
with x P = x
gth_solve : returns the... | oyamad/mpmath_eigen_markov | eigen_markov.py | Python | bsd-3-clause | 5,711 | [
"Gaussian"
] | b692fabb7b3c919c417c7d61a896e48ec581d7c24a8afa471852dd9c3b059ee7 |
# -*- coding:utf-8 -*-
from brian import Equations, NeuronGroup
from brian.units import *
from brian.stdunits import *
from model import PARAMETERS as ps
# If the model parameters have been initialized
if ps != None:
PSGR = ps['Granule']
C_m = PSGR['C_m']
g_L = PSGR['g_L']
E_L = PSGR['E_L']
g_... | neuro-lyon/multiglom-model | src/model/granule_cells.py | Python | mit | 2,334 | [
"Brian"
] | 4a0e49aadac6e09c83829730827f8033e55917f81f7835c0b8c9ed8df7a50496 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
| This file is part of the web2py Web Framework
| Copyrighted by Massimo Di Pierro <mdipierro@cs.depaul.edu>
| License: LGPLv3 (http://www.gnu.org/licenses/lgpl.html)
CONTENT_TYPE dictionary created against freedesktop.org's shared mime info
database version 1.1.
Dev... | manuelep/openshift_v3_test | wsgi/web2py/gluon/contenttype.py | Python | mit | 30,533 | [
"NetCDF"
] | 6f2bde91f4275eee1cc9c48d053652f634dbf52e34f7825e1ef944483ec50148 |
#!/usr/bin/env python
#
# Author: Oliver J. Backhouse <olbackhouse@gmail.com>
# George H. Booth <george.booth@kcl.ac.uk>
#
'''
An example of generating Dyson orbitals from an AGF2 calculation.
Default AGF2 corresponds to the AGF2(1,0) method outlined in the papers:
- O. J. Backhouse, M. Nusspickel and G. H.... | sunqm/pyscf | examples/agf2/10-dyson_orbitals.py | Python | apache-2.0 | 934 | [
"PySCF"
] | a4e1c560bb41b54bca5fb95fcf47509f2e445cdd0df27fea995c5c96ff2c81d4 |
from __future__ import print_function, division
from sympy.core.add import Add
from sympy.core.compatibility import as_int, is_sequence, range
from sympy.core.exprtools import factor_terms
from sympy.core.function import _mexpand
from sympy.core.mul import Mul
from sympy.core.numbers import Rational
from sympy.core.nu... | antepsis/anteplahmacun | sympy/solvers/diophantine.py | Python | bsd-3-clause | 92,743 | [
"Gaussian"
] | 8bd04aa7cf05f156288a2028f4bb665b13b03bd7fd01a65d3957b083b6a1a024 |
# Copyright 2017 Max Planck Society
# Distributed under the BSD-3 Software license,
# (See accompanying file ./LICENSE.txt or copy at
# https://opensource.org/licenses/BSD-3-Clause)
"""Class responsible for vizualizing and evaluating trained models.
"""
import os
import logging
import tensorflow as tf
import matplotli... | tolstikhin/adagan | metrics.py | Python | bsd-3-clause | 28,548 | [
"Gaussian"
] | c9d3dbbade8b49389b7bd11504772bb0066b667a109656db5ef2081e022e67de |
# Orca
#
# Copyright 2004-2008 Sun Microsystems Inc.
# Copyright 2001, 2002 BAUM Retec, A.G.
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version 2.1 of the License, or (at ... | Alberto-Beralix/Beralix | i386-squashfs-root/usr/share/pyshared/orca/rolenames.py | Python | gpl-3.0 | 39,324 | [
"ORCA"
] | 0a7ea3bd5874ceff5285ddba07c9b5bd0b1f5fee1fb6cc771c875f6b652b6057 |
# -*- coding: utf-8 -*-
class vlist(list):
def accept(self, visitor):
visitor.visit_list(self)
class vdict(dict):
def accept(self, visitor):
visitor.visit_dict(self)
class Printer(object):
def visit_list(self, ob):
print 'list content :'
print str(ob)
def visit_dict(s... | t10471/python | practice/src/design_pattern/expert/visitor.py | Python | mit | 1,310 | [
"VisIt"
] | 39136ebd599cfad6ca207340fa1e3e85a94dd09bf970303b0ac3e1a790af2236 |
# -*- coding: utf-8 -*-
"""
Created on Thu Jan 07 11:08:01 2016
@author: Radu
"""
from neuron import h
from matplotlib import pyplot
def set_recording_vectors(cell):
"""Set soma, dendrite, and time recording vectors on the cell.
:param cell: Cell to record from.
:return: the soma, dendrite, and time vec... | penguinscontrol/Spinal-Cord-Modeling | ClarkesNetwork/simrun_passive.py | Python | gpl-2.0 | 1,539 | [
"NEURON"
] | 23c6b6a5c940b076516f4c032cb92965137efd7a8880f6f6fc40091f12a434e6 |
# -*- coding: utf-8 -*-
# Copyright 2007-2020 The HyperSpy developers
#
# This file is part of HyperSpy.
#
# HyperSpy is free software: you can redistribute it and/or modify
# it under the terms of GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at yo... | dnjohnstone/hyperspy | hyperspy/_components/doniach.py | Python | gpl-3.0 | 5,281 | [
"Gaussian"
] | be9d99c7049b1e39d6bb6ec9a379498407e85cccc78de1d33c65c1150ba5d868 |
"""
Extensions to SQLAlchemy for altering existing tables.
At the moment, this isn't so much based off of ANSI as much as
things that just happen to work with multiple databases.
"""
import StringIO
import sqlalchemy as sa
from sqlalchemy.schema import SchemaVisitor
from sqlalchemy.engine.default import Defa... | zhumengyuan/kallithea | kallithea/lib/dbmigrate/migrate/changeset/ansisql.py | Python | gpl-3.0 | 10,723 | [
"VisIt"
] | f5783e2db3e7a9808b5e1aa2bfbc3a3e0c5072a7d5400a0eb9c2393aa6f797f2 |
# Copyright 2012 by Eric Talevich. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
import collections
import warnings
from Bio.Alphabet import generic_protein
from Bio.Seq impor... | updownlife/multipleK | dependencies/biopython-1.65/build/lib.linux-x86_64-2.7/Bio/SeqIO/PdbIO.py | Python | gpl-2.0 | 9,132 | [
"Biopython"
] | 77427944a90df8bdd45754c4a2c81330d2c1fdf8f5ae89134b3b1eac5da9221c |
from collections import OrderedDict
import logging
import os
import parmed.unit as units
from intermol.utils import which, run_subprocess
from intermol.gromacs.gromacs_parser import load, save
GMX_PATH = ''
logger = logging.getLogger('InterMolLog')
to_canonical = {
'Bond': 'bond',
'Angle': 'angle',
'... | shirtsgroup/InterMol | intermol/gromacs/__init__.py | Python | mit | 4,930 | [
"Gromacs"
] | c41ef7245e028d3fb83846e690d3de6cd721d777e3a4efd95252f1b6e0e0e8b2 |
from nbodykit import CurrentMPIComm
from nbodykit.binned_statistic import BinnedStatistic
from collections import OrderedDict
import numpy
import logging
import kdcount
class Base3PCF(object):
"""
Base class for implementing common 3PCF calculations.
Users should use :class:`SimulationBox3PCF` or :class:`... | nickhand/nbodykit | nbodykit/algorithms/threeptcf.py | Python | gpl-3.0 | 19,956 | [
"Galaxy"
] | 05b36a6a514934ae0e29dfe9028e7057050330f7696aa650e92d6538b3a309c4 |
#
# Copyright 2018 Analytics Zoo Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to... | intel-analytics/analytics-zoo | pyzoo/test/zoo/orca/learn/spark/test_estimator_for_spark.py | Python | apache-2.0 | 25,922 | [
"ORCA"
] | fff5ca7e30f60cb4b01cf24d1bfbd382f96d87c713e4afa286a69a70cd6402c2 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
import unittest
from pymatgen.optimization.linear_assignment import LinearAssignment
import numpy as np
class LinearAssignmentTest(unittest.TestCase):
def test(self):
w0 = np.array([[19, 95, 9,... | dongsenfo/pymatgen | pymatgen/optimization/tests/test_linear_assignment.py | Python | mit | 7,626 | [
"pymatgen"
] | 68d12f4848adea15a3682d0e58f3a6c060eaa251604eb4e7cdfecd686ed07007 |
import unittest
from test import support
import sys
import random
import math
import array
# SHIFT should match the value in longintrepr.h for best testing.
SHIFT = sys.int_info.bits_per_digit
BASE = 2 ** SHIFT
MASK = BASE - 1
KARATSUBA_CUTOFF = 70 # from longobject.c
# Max number of base BASE digits to use in te... | batermj/algorithm-challenger | code-analysis/programming_anguage/python/source_codes/Python3.5.9/Python-3.5.9/Lib/test/test_long.py | Python | apache-2.0 | 49,541 | [
"Brian"
] | 260fa254e6453abdf0ceee48e5174f2f8908275e801733599c1f065af9573b3b |
# Author: Travis Oliphant, 2002
#
# Further updates and enhancements by many SciPy developers.
#
from __future__ import division, print_function, absolute_import
import math
import warnings
from collections import namedtuple
import numpy as np
from numpy import (isscalar, r_, log, around, unique, asarray,
... | argriffing/scipy | scipy/stats/morestats.py | Python | bsd-3-clause | 94,790 | [
"Gaussian"
] | 893af3ba3266c7ecf37f236558e1d9bd52db7f0ebb12a6daa880568a8bff28a8 |
"""
#;+
#; NAME:
#; cgm.core
#; Version 1.0
#;
#; PURPOSE:
#; Module for core routines of CGM analysis
#; 29-Nov-2014 by JXP
#;-
#;------------------------------------------------------------------------------
"""
from __future__ import print_function, absolute_import, division, unicode_literals
import numpy... | nhmc/xastropy | xastropy/cgm/field.py | Python | bsd-3-clause | 7,430 | [
"Galaxy"
] | 7c3b2af0a973a13d76934c934f1f217f10d018fb5ff094e8d92eee0b71b6c417 |
import unittest, time, sys
sys.path.extend(['.','..','../..','py'])
import h2o, h2o_cmd, h2o_glm, h2o_util, h2o_import as h2i
class Basic(unittest.TestCase):
def tearDown(self):
h2o.check_sandbox_for_errors()
@classmethod
def setUpClass(cls):
h2o.init(1)
global SYNDATASETS_DIR
... | rowhit/h2o-2 | py/testdir_single_jvm/test_GLM2_princeton.py | Python | apache-2.0 | 1,776 | [
"Gaussian"
] | dc4e9e7879ebd17d44fe513337349d5565eb5400080c6c0e574ec20e4e6c67f2 |
# -*- coding: utf8
"""Random Projection transformers
Random Projections are a simple and computationally efficient way to
reduce the dimensionality of the data by trading a controlled amount
of accuracy (as additional variance) for faster processing times and
smaller model sizes.
The dimensions and distribution of Ra... | kmike/scikit-learn | sklearn/random_projection.py | Python | bsd-3-clause | 21,717 | [
"Gaussian"
] | 061ea4fb3bfa2f64100e88f0adf090b0e05a9fd9ef761530f73bcfe28e8efff2 |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# This source code is licensed under the MIT license found in the
# LICENSE file in the root directory of this source tree.
import unittest
from parlai.core.opt import Opt
from parlai.tasks.empathetic_dialogues.agents import (
EmotionClass... | facebookresearch/ParlAI | tests/tasks/test_empathetic_dialogues.py | Python | mit | 30,262 | [
"VisIt",
"exciting"
] | 3900afda2eb3c582dda202c141eeeb7591a65c80b1f82435372f329b77d043b7 |
#!/usr/bin/env python
#
# Manage bundled python module files for use in PyPy.js.
#
# This script is used to manage an indexed bundle of python module files in
# a format that makes them easy to use for PyPy.js. In particular it lets
# us hack around the fact that we can't use an async XMLHttpRequest from
# inside... | perkinslr/pypyjs | website/js/pypy.js-0.2.0/tools/module_bundler.py | Python | mit | 23,227 | [
"VisIt"
] | b3c1c10576466d2091a17f76a21f3a1bb679e289618b46b5830731738bba8162 |
#######################################
# pyGPGO examples
# example1d: SHows how the Bayesian Optimization works on a one-dimensional
# sine-like function, step by step.
#######################################
import os
import matplotlib.pyplot as plt
import numpy as np
from pyGPGO.GPGO import GPGO
from pyGPGO.surr... | hawk31/pyGPGO | examples/example1d.py | Python | mit | 1,883 | [
"Gaussian"
] | 3c087cb4ac0ec71c081436eb613d9a6ed1c10e89a54113738d084cc729815cc4 |
__author__ = 'Jason Piper'
import imp
current_version = imp.load_source('lol', 'pyDNase/_version.py').__version__
try:
from setuptools import setup, Extension
except ImportError:
from distutils.core import setup
from distutils.extension import Extension
setup(
name='pyDNase',
version=current_vers... | jpiper/pyDNase | setup.py | Python | mit | 1,690 | [
"pysam"
] | e0e7d5be38c8ffd701185bed9ad271b06013516d041129759394f484f4353a72 |
# Copyright (c) Materials Virtual Lab.
# Distributed under the terms of the BSD License.
"""
This package contains various command line interfaces for common
pymatgen functionality such as file conversion, etc. Entry points to these
interfaces are defined in setup.py.
"""
| vorwerkc/pymatgen | pymatgen/cli/__init__.py | Python | mit | 274 | [
"pymatgen"
] | 91ec1a41939000912ebf0a12b1081f06137ee2ae06814744e8155118ab32205d |
## ENVISIoN
##
## Copyright (c) 2021 Gabriel Anderberg, Didrik Axén, Adam Engman,
## Kristoffer Gubberud Maras, Joakim Stenborg
## All rights reserved.
##
## Redistribution and use in source and binary forms, with or without
## modification, are permitted provided that the following conditions are met:
##
## 1.... | rartino/ENVISIoN | demo/molecular_dynamics.py | Python | bsd-2-clause | 2,653 | [
"VASP"
] | 6270b8edebdc7ab9a10d665f8aac529017edd73a2f9ca96db99d2c4aeebc3911 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
from __future__ import unicode_literals
import re
import six
import errno
import os
import tempfile
import codecs
from monty.io import zopen
"""
This module provides utility classes for io operations.
"""
__a... | Bismarrck/pymatgen | pymatgen/util/io_utils.py | Python | mit | 6,087 | [
"pymatgen"
] | 121306622611bc5d5c217d405501ff34c69179e0887ce64f2703b4fa13f455a2 |
"""
Module to that correct the Discret Fourier Transform
in order to get the analytical value.
"""
from __future__ import division
import numpy as np
import scipy
try:
import numba as nb
use_numba = True
except:
use_numba = False
def get_fft_freq(t):
"""
return the frequency range of the... | gkc1000/pyscf | pyscf/nao/m_fft.py | Python | apache-2.0 | 12,731 | [
"PySCF"
] | d2ba4215c7f7db6f01c561af8941d7209822ce5b4f6e3468aaf8b83517fbd6ae |
# encoding: utf-8
'''
PYROMS is a toolkit for working with ROMS ocean models
pyroms is based on the python/numpy/matplotlib scientific python suite.
NetCDF I/O is based on the NetCDF4-python package. The toolkit contains
general modeling tools for dealing with arrays, diagnosing standard
properties, curvilinear gr... | dcherian/pyroms | pyroms/pyroms/__init__.py | Python | bsd-3-clause | 583 | [
"NetCDF"
] | 8ab5c2a74fd21149f633d261a35096538d5f4c166cf4f6816ee2efc15da894e5 |
#!/usr/bin/env python
import os
import sys
import numpy as np
import matplotlib.pyplot as plt
def expected(x):
p0 = 0.0
bulk = 1.2
dens0 = 1.0
grav = 1.0
return -bulk * np.log(np.exp(-p0 / bulk) + grav * dens0 * x / bulk)
def equal_to_tol(a, b):
return (np.abs(a) < 1.0E-10 and np.abs(b) < 1.0... | katyhuff/moose | modules/porous_flow/doc/tests/gravity.py | Python | lgpl-2.1 | 2,634 | [
"MOOSE"
] | e2469694ab3ba688d2e29e10838bc05aec318fd1d26b36a561d5dc677ec402c1 |
#!/usr/bin/env python
import vtk
from vtk.test import Testing
from vtk.util.misc import vtkGetDataRoot
VTK_DATA_ROOT = vtkGetDataRoot()
# create a rendering window and renderer
ren1 = vtk.vtkRenderer()
renWin = vtk.vtkRenderWindow()
renWin.AddRenderer(ren1)
renWin.StereoCapableWindowOn()
iren = vtk.vtkRende... | hlzz/dotfiles | graphics/VTK-7.0.0/IO/EnSight/Testing/Python/EnSightSelectArrays.py | Python | bsd-3-clause | 1,590 | [
"VTK"
] | 60c0caf103eb13b978f844f23144730d48a6445c0cc0e090ead27bd7ad31c92c |
#!/usr/bin/env python
import numpy as np
from gpaw.mpi import world
from gpaw.utilities.dscftools import mpi_debug
W = world.size
N = 32
assert N%W == 0
M = N//W
# Create my share of data
data = np.arange(world.rank*M, (world.rank+1)*M)
# Let's calculate the global sum
slocal = data.sum()
s = world.sum(slocal)
mp... | qsnake/gpaw | doc/devel/parallelization.py | Python | gpl-3.0 | 3,593 | [
"GPAW"
] | 2f4a350c0a11e1f163ac3f5949632c4c59d17399e0d68b0ac4cf9d409d14f6ad |
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not u... | dmlc/tvm | python/tvm/relay/frontend/change_datatype.py | Python | apache-2.0 | 3,473 | [
"VisIt"
] | e44b43f1d518687e2cb6b138aa5090a8a252ec4766ee860a2e6324f0e2dc8856 |
# -*- coding: utf-8 -*-
#
"""
This models contains the Kernels for Kernel smoothing.
Hopefully in the future they may be reused/extended for other kernel based
method
References:
----------
Pointwise Kernel Confidence Bounds
(smoothconf)
http://fedc.wiwi.hu-berlin.de/xplore/ebooks/html/anr/anrhtmlframe62.html
"""
#... | pprett/statsmodels | statsmodels/sandbox/nonparametric/kernels.py | Python | bsd-3-clause | 13,269 | [
"Gaussian"
] | 934820c9aed98fb0f44c4c9cb858a3fbb5bea62786f16ab446df5166a3b7da74 |
#
# Copyright 2016 The BigDL Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in ... | intel-analytics/BigDL | python/orca/src/bigdl/orca/common.py | Python | apache-2.0 | 16,827 | [
"ORCA"
] | cfefe809936688009a10dc48e6710c1461420610f67f71979665f1572c6d5401 |
'''
Created on Jul 14, 2011
@author: sean
'''
from __future__ import print_function
from graphlab.meta.decompiler.simple_instructions import SimpleInstructions
from graphlab.meta.decompiler.control_flow_instructions import CtrlFlowInstructions
import _ast
from graphlab.meta.asttools import print_ast
from graphlab.met... | chen0031/Dato-Core | src/unity/python/graphlab/meta/decompiler/instructions.py | Python | agpl-3.0 | 14,782 | [
"VisIt"
] | 5f2835e18c31d20865e60b244adfc53a126fcb27ab30680a8f1b026b072067f7 |
import collections
import contextlib
import heapq
import inspect
import traceback
import weakref
import numpy
import six
import chainer
from chainer import _backprop_utils
from chainer.backends import cuda
from chainer import backend
from chainer import configuration
from chainer import function_hook
from chainer.gra... | jnishi/chainer | chainer/function_node.py | Python | mit | 49,905 | [
"VisIt"
] | 8a244247636174da632bec7d7714e26fdaa1cc87bd06ece69962d3fdf3ada4ad |
#!/usr/bin/env python
# Copyright 2018-2020 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.... | gkc1000/pyscf | pyscf/ao2mo/semi_incore.py | Python | apache-2.0 | 13,121 | [
"PySCF"
] | 23559860e4402b63e9cdeb50c8631465c846f5d6d663d27ace5426386d1abec7 |
import logging
import os
import easygui
import math
import sys
import numpy as np
import pyqtgraph as pg
import pyqtgraph.opengl as gl
from pyqtgraph.Qt import QtCore, QtGui
from scipy.misc import imread
import matplotlib as mpl
import matplotlib.pyplot as plt
if __name__ == '__main__':
from cogrecon.core.data_... | kevroy314/msl-iposition-pipeline | cogrecon/core/visualization/vis_time_travel_task.py | Python | gpl-3.0 | 35,430 | [
"Mayavi"
] | 612518c0688886d0e885146f6fd4a085c73a94820a286365c2d961932a79a595 |
#!/usr/bin/env python
# Copyright 2014-2018 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | sunqm/pyscf | pyscf/pbc/dft/test/test_rks.py | Python | apache-2.0 | 6,300 | [
"PySCF"
] | 999ef22b81b17750d00888a2b3d6c570c2bdfd964942fd599d4763a4cecf229b |
# -*- coding: utf-8 -*-
import os
import re
import zipfile
from shutil import copyfileobj
from django import forms
from django.conf import settings
from django.core.cache import cache
from django.core.files.storage import default_storage as storage
from django.core.urlresolvers import reverse
from mock import Mock, p... | jamesthechamp/zamboni | mkt/files/tests/test_helpers.py | Python | bsd-3-clause | 11,149 | [
"exciting"
] | be352bac5f059709f18b32fc6ed340505a9fa7dad7b68815335e34321e0ac825 |
"""Convert the Unidata GOES product netcdf files to IEM PNG.
The devil is in the details here :)
"""
import datetime
import subprocess
import traceback
import tempfile
import json
import os
import sys
import inotify.adapters
from PIL import Image
import numpy as np
from netCDF4 import Dataset
from pyiem.util import ... | akrherz/pyWWA | goes/netcdf2png.py | Python | mit | 6,591 | [
"NetCDF"
] | ada660e23f4c615d2b79121a6b284408a2507a4602b5b1538ab4fd8b1db6bdf1 |
from test import test_support
import unittest
import codecs
import sys, StringIO, _testcapi
class Queue(object):
"""
queue: write bytes at one end, read bytes from the other end
"""
def __init__(self):
self._buffer = ""
def write(self, chars):
self._buffer += chars
def read(se... | mancoast/CPythonPyc_test | cpython/266_test_codecs.py | Python | gpl-3.0 | 56,881 | [
"FEFF"
] | 8aed45685ef0f8c8f30ecf11d362bfe1981a8b1793e3291619c56eb2fc453b59 |
# -*- coding: utf-8 -*-
# <nbformat>3.0</nbformat>
# <headingcell level=1>
# Reading H-SAF images
# <rawcell>
# In this Example we will read and plot images of the H-SAF products H07, H08 and H14.
# <codecell>
import pytesmo.io.sat.h_saf as h_saf
import os
import datetime
import matplotlib.pyplot as plt
from mpl_... | christophreimer/pytesmo | examples/Read_H_SAF_images.py | Python | bsd-3-clause | 10,071 | [
"Gaussian"
] | 8d8382d097be6507f0ce71fac864412e2053deb3433dd38c07aae865b5e53f1d |
"""
This file is part of gempy.
gempy is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
gempy is distributed in the h... | cgre-aachen/gempy | gempy/plot/_plot.py | Python | lgpl-3.0 | 14,507 | [
"Gaussian",
"VTK"
] | 12a7817c35ace44861cbcc3504382bdf555e369c69c0f4bcd2d1dab24d036756 |
# -*- coding: utf-8 -*-
import ast
import base64
import csv
import glob
import itertools
import logging
import operator
import datetime
import hashlib
import os
import re
import simplejson
import time
import urllib2
import xmlrpclib
import zlib
from xml.etree import ElementTree
from cStringIO import StringIO
import b... | dhp-denero/LibrERP | web_client/ea_web-github/addons/web/controllers/main.py | Python | agpl-3.0 | 81,348 | [
"VisIt"
] | f488595a3d97a211815c96b8e4ba998c659b6bd2cb5a962d8c75487aa94a4b3f |
#!/usr/bin/env python
#
# $File: absIndex.py $
#
# This file is part of simuPOP, a forward-time population genetics
# simulation environment. Please visit http://simupop.sourceforge.net
# for details.
#
# Copyright (C) 2004 - 2010 Bo Peng (bpeng@mdanderson.org)
#
# This program is free software: you can redistribute i... | BoPeng/simuPOP | docs/absIndex.py | Python | gpl-2.0 | 1,272 | [
"VisIt"
] | 0594616d8f831201f9b7cc99c2a21f8fea270bac189da6a5cf443f3e4bf9b720 |
# -*- coding: utf-8 -*-
"""
urls
~~~~
URL definitions.
:copyright: 2009 by tipfy.org.
:license: BSD, see LICENSE.txt for more details.
"""
from tipfy import Rule, Submount, get_config, import_string
def get_rules():
"""Returns a list of URL rules for the application. The list can be
defi... | ac001/moe | project/app/urls.py | Python | bsd-3-clause | 1,517 | [
"MOE"
] | 132716ff3818351be67f5e54608a2b8e549c557064512abd8130f817007a1711 |
###########################################################################
#
# This program is part of Zenoss Core, an open source monitoring platform.
# Copyright (C) 2012, Zenoss Inc.
#
# This program is free software; you can redistribute it and/or modify it
# under the terms of the GNU General Public License versi... | zenoss/ZenPacks.zenoss.Notifications | ZenPacks/zenoss/Notifications/actions/altemailhost.py | Python | gpl-2.0 | 3,955 | [
"VisIt"
] | 205dacaae03ea94f6e3a777fbb61e2dfa08ecb3a5a697e5d56516360e01a6980 |
from java import lang
from com.im.lac.types import MoleculeObject, MoleculeObjectIterable
lang.System.loadLibrary('GraphMolWrap')
from org.RDKit import *
from find_props import funct_dict
from java.util import ArrayList
def filter_prop(request, function, max_ans, min_ans):
"""Function to filter a list of mols giv... | InformaticsMatters/squonk | components/rdkit-camel/src/main/python/find_props/filter_props.py | Python | apache-2.0 | 1,170 | [
"RDKit"
] | 51c1e46f9cc178f86bd01ed6139138a2851b86557ab2a80d46928c90d5910b6a |
#
# The Template-Python distribution is Copyright (C) Sean McAfee 2007-2008,
# derived from the Perl Template Toolkit Copyright (C) 1996-2007 Andy
# Wardley. All Rights Reserved.
#
# The file "LICENSE" at the top level of this source distribution describes
# the terms under which this file may be distributed.
#
... | gsnedders/Template-Python | template/context.py | Python | artistic-2.0 | 36,136 | [
"VisIt"
] | 8ed375bf71e9d71c13f143fe41c7dc6f427a35a2c1162e736e7d1ead63482957 |
"""
Alchemical softening illustration for imatinib binding to Abl kinase.
"""
__author__ = 'John D. Chodera'
################################################################################
# IMPORTS
################################################################################
import os, os.path
import sys, math... | steven-albanese/sams | examples/abl-imatinib-explicit/soften-ligand.py | Python | mit | 6,729 | [
"Amber",
"MDTraj",
"OpenMM"
] | e471ac338732a704117d261bc2007c28896d9d59f555022b602aa4a2a262af7e |
# Default Django settings. Override these with settings in the module
# pointed-to by the DJANGO_SETTINGS_MODULE environment variable.
# This is defined here as a do-nothing function because we can't import
# django.utils.translation -- that module depends on the settings.
gettext_noop = lambda s: s
#################... | rawwell/django | django/conf/global_settings.py | Python | bsd-3-clause | 13,209 | [
"VisIt"
] | a6104b073602cddcb4c26264d0b942ca200b9400295831799b051cd3b1aa7e2e |
import difflib
import glob
import itertools as it
import os
from typing import List
import parmed as pmd
import pytest
from lxml import etree as ET
from parmed.gromacs.gromacstop import _Defaults
from pkg_resources import resource_filename
from foyer import Forcefield, forcefields
from foyer.exceptions import (
F... | mosdef-hub/foyer | foyer/tests/test_forcefield.py | Python | mit | 29,080 | [
"Gromacs",
"OpenMM"
] | 88b202ab043fee94157af5fa366be17a510cfadf31edbfd98917917738d71135 |
#!/usr/bin/python
#
# @author: Gaurav Rastogi (grastogi@avinetworks.com)
# Eric Anderson (eanderson@avinetworks.com)
# module_check: supported
# Avi Version: 17.1.1
#
# Copyright: (c) 2017 Gaurav Rastogi, <grastogi@avinetworks.com>
# GNU General Public License v3.0+ (see COPYING or https://www.gnu.org/licenses... | andmos/ansible | lib/ansible/modules/network/avi/avi_sslprofile.py | Python | gpl-3.0 | 8,511 | [
"VisIt"
] | a01189d80f1deb40b614df395d090e1a8e24f09b3de3436374ccf1f781b98a17 |
#!/usr/bin/env python
# Example to illustrate the benefit of using EDHMM over HMM, to fit temporally structured event patterns.
#
# Written by Dan Stowell 2016.
#
# To the extent possible under law, the author(s) have dedicated all copyright and related and neighboring rights to this software to the public domain worl... | cassebook/cassebook.github.io | code/ch08/fig8_4_edhmm_example.py | Python | mit | 8,320 | [
"Gaussian"
] | af694e4505157a40471fc158eb8ab1a2aa7632e74e31ead953c1ccc8e8d6750a |
# Copyright (c) 2015, Frappe Technologies Pvt. Ltd. and Contributors
# License: GNU General Public License v3. See license.txt
from __future__ import unicode_literals
import frappe
from frappe.model.utils.rename_field import rename_field
from frappe.modules import scrub, get_doctype_module
rename_map = {
"Opportunit... | ovresko/erpnext | erpnext/patches/v5_0/rename_table_fieldnames.py | Python | gpl-3.0 | 6,648 | [
"VisIt"
] | fe64eca4246eec6a7286f2aafbe2c3242ef2697e47a45fa8e4236b6a117255c3 |
#!/usr/bin/env python
# -*- coding: UTF-8 -*-
"""Death by Captcha HTTP and socket API clients.
There are two types of Death by Captcha (DBC hereinafter) API: HTTP and
socket ones. Both offer the same functionalily, with the socket API
sporting faster responses and using way less connections.
To access the socket AP... | dantebarba/docker-media-server | plex/Sub-Zero.bundle/Contents/Libraries/Shared/deathbycaptcha.py | Python | gpl-3.0 | 17,470 | [
"VisIt"
] | f46acb84b523f3f594ef5f6381d36b4e234d5f37e1c166dcac5da5d9ea6d32fc |
from __future__ import print_function
import fitsio
from legacypipe.runbrick import *
from legacypipe.runbrick import _depth_histogram
from legacypipe.coadds import write_coadd_images, _resample_one
from collections import OrderedDict
olddir = '/global/projecta/projectdirs/cosmo/work/dr4c'
def stage_galdepths(survey... | legacysurvey/legacypipe | py/scripts/dr4/remake-galdepths.py | Python | bsd-3-clause | 5,658 | [
"Galaxy"
] | c3712c89b727e12e619c446286956e4c55f4d76d320c546a05bba3dac3845bdd |
# Copyright (c), Michael DeHaan <michael.dehaan@gmail.com>, 2012-2013
# Copyright (c), Toshio Kuratomi <tkuratomi@ansible.com> 2016
# Simplified BSD License (see licenses/simplified_bsd.txt or https://opensource.org/licenses/BSD-2-Clause)
from __future__ import absolute_import, division, print_function
SIZE_RANGES = ... | jimi-c/ansible | lib/ansible/module_utils/basic.py | Python | gpl-3.0 | 116,552 | [
"VisIt"
] | 2341d47d7d821999ffc048bde50cd83399505510ac7f06e950aa8c57343825f2 |
from __future__ import absolute_import
import unittest
import math
import os
import numpy as np
from monty.serialization import loadfn
from pymatgen.analysis.elasticity.tensors import *
from pymatgen.core.operations import SymmOp
from pymatgen.symmetry.analyzer import SpacegroupAnalyzer
from pymatgen.util.testing imp... | matk86/pymatgen | pymatgen/analysis/elasticity/tests/test_tensors.py | Python | mit | 24,453 | [
"pymatgen"
] | 026ef2db663e598de4d4540dc7b9591bf7a88a0637e05ab6771cc7d21109b5a9 |
"""
This is the VAR class refactored from pymaclab.
"""
from __future__ import division
import copy as COP
import scipy as S
import numpy as np
from numpy import matlib as MAT
from scipy import linalg as LIN #TODO: get rid of this once cleaned up
from scipy import linalg, sparse
from scipy.stats import norm, ss as sumo... | matthew-brett/draft-statsmodels | scikits/statsmodels/sandbox/tsa/var.py | Python | bsd-3-clause | 48,879 | [
"ADF"
] | a1230921dc5b4598e9338530be8705c4dcc7d78014701dd774a61f7b4f8b6ebe |
# -*- coding: utf-8 -*-
#
# precise_spiking.py
#
# This file is part of NEST.
#
# Copyright (C) 2004 The NEST Initiative
#
# NEST is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 2 of the License... | lekshmideepu/nest-simulator | pynest/examples/precise_spiking.py | Python | gpl-2.0 | 5,090 | [
"NEURON"
] | 234ffb7fcc94a33625c5ae668524ab929f34cf7e6ebc87969f7422c05dbc4792 |
'''
Game Boy ROM Object
A part of the libPirate (Python) library
Version: 0.2
Author: Derrick Sobodash <derrick@sobodash.com>
Copyright: (c) 2008, 2012 Derrick Sobodash
Web site: https://github.com/sobodash/libpirate/
License: BSD License <http://opensource.org/licenses/bsd-license.php>
'''
try:
import re
... | sobodash/libpirate | lib/pirromgboy.py | Python | bsd-2-clause | 9,575 | [
"VisIt"
] | 8d955e59b9ade6553795440bf8cd67051a9b9c6a40351c1a7f9539c301a17061 |
"""Unit test for soundex.py
This program is part of "Dive Into Python", a free Python book for
experienced programmers. Visit http://diveintopython.org/ for the
latest version.
"""
__author__ = "Mark Pilgrim (mark@diveintopython.org)"
__version__ = "$Revision: 1.1 $"
__date__ = "$Date: 2004/05/06 17:18:17 $"
__copyr... | tapomayukh/projects_in_python | sandbox_tapo/src/refs/diveintopython-pdf-5.4/diveintopython-5.4/py/soundextest.py | Python | mit | 1,122 | [
"VisIt"
] | 3db0ccdc257d0e6d163c7e705b41b260345049c55691430f0e3c185c1a55ed7a |
import pycuda.autoinit
from pycuda.compiler import SourceModule
cu_matrix_kernel = SourceModule("""
#include <math.h>
#include <stdio.h>
#include "texture_fetch_functions.h"
#include "texture_types.h"
#define THREADS_PER_BLOCK 256
#define FIT_RADIUS 6
texture<float, cudaTextureType2DLayered, cudaReadModeElementTy... | MichaelDAlbrow/pyDIA | Code/cuda_functions_sp.py | Python | mit | 42,630 | [
"Gaussian"
] | 8ed2d3d635ec40b0dd97b7869efbc8dbf26d11a66068ef06b2989d80b822c2d1 |
'''collect all functions that deal directly with event lists for e.g.::
- Timing
'''
import numpy as np
import scipy
import scipy.stats
import matplotlib as mpl
import matplotlib.mlab as mlab
import matplotlib.pyplot as plt
from PyAstronomy.pyTiming import pyPeriod
from astropy.table import Table
import glob
import... | hamogu/COStools | eventlists.py | Python | gpl-2.0 | 19,517 | [
"Gaussian"
] | 45aa86473dac40cd4a062fd1fc3e166f6d7329bf51d76d2bf6f847963c20c88d |
#!/usr/bin/env python2
# Copyright (C) 2016-2017(H)
# Max Planck Institute for Polymer Research
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, eit... | govarguz/espressopp | examples/tabulated_potential/table_interpolation.py | Python | gpl-3.0 | 6,396 | [
"ESPResSo"
] | 09e8115212c6d453472659886eeeb0d77b7e3a79c27d9c9f81ff7f68d5a1aecd |
# make plot of ozone concentration data on
# lambert conformal conic map projection, drawing coastlines, state and
# country boundaries, and parallels/meridians.
# the data is interpolated to the native projection grid.
from mpl_toolkits.basemap import Basemap, shiftgrid
import numpy as np
import matplotlib.pyplot as ... | raincoatrun/basemap | examples/plotozone.py | Python | gpl-2.0 | 4,020 | [
"NetCDF"
] | 08415bc449fe109fc9e32475c27e1c94b650af003e7a1382ab17b0ffd0a11e0d |
#----------------------------------------------------------------------
# This file was generated by img2py.py
#
from wx.lib.embeddedimage import PyEmbeddedImage
_3d_graph = PyEmbeddedImage(
"iVBORw0KGgoAAAANSUhEUgAAACAAAAAgCAYAAABzenr0AAAGw0lEQVR42sXXe1BU1xkA8O8+"
"dveyPHZl7/JYApEQBDEaJQ9nSBEEY1JHbR5a09Exace... | ODM2/ODMToolsPython | odmtools/common/icons/icons.py | Python | bsd-3-clause | 139,001 | [
"ASE"
] | 5a24a1a0740a4eedfd167de8a22a56ecb1da04a587818451b46717fdeb428b56 |
#!/usr/bin/env python
"""
desispec.io.emlinefit
====================
IO routines for desi_emlinefit_afterburner.
"""
import os
from astropy.table import Table
import fitsio
import numpy as np
from desitarget.geomask import match_to
from desitarget.targets import main_cmx_or_sv
from desiutil.dust import ext_odonnell
f... | desihub/desispec | py/desispec/io/emlinefit.py | Python | bsd-3-clause | 18,073 | [
"Galaxy"
] | 3369df334b523436d12ed0c4df9f29ec6384097968fbeb2ead960448532968c8 |
"""Functions to plot epochs data
"""
# Authors: Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Denis Engemann <denis.engemann@gmail.com>
# Martin Luessi <mluessi@nmr.mgh.harvard.edu>
# Eric Larson <larson.eric.d@gmail.com>
# Jaakko Leppakangas <jaeilepp@student.jyu.f... | andyh616/mne-python | mne/viz/epochs.py | Python | bsd-3-clause | 60,131 | [
"Gaussian"
] | ac86673b835b0228e958185641ace179b90e4cdadc89a20a8bc963e924c6295a |
# -*- coding: utf-8 -*-
# vi:si:et:sw=4:sts=4:ts=4
##
## Copyright (C) 2012-2015 Async Open Source <http://www.async.com.br>
## All rights reserved
##
## This program is free software; you can redistribute it and/or modify
## it under the terms of the GNU General Public License as published by
## the Free Software Fou... | andrebellafronte/stoq | stoqlib/gui/test/test_producteditor.py | Python | gpl-2.0 | 7,862 | [
"VisIt"
] | 00e94295529c199473c2b0acbb9e04a73f4190a87695b11d2c1766e08b6688e7 |
# -*- coding: utf-8 -*-
"""
End-to-end tests related to the divided discussion management on the LMS Instructor Dashboard
"""
from __future__ import absolute_import
import uuid
from common.test.acceptance.fixtures.course import CourseFixture, XBlockFixtureDesc
from common.test.acceptance.pages.common.auto_auth impor... | ESOedX/edx-platform | common/test/acceptance/tests/discussion/test_discussion_management.py | Python | agpl-3.0 | 22,127 | [
"VisIt"
] | 3ebbef90c3cf38a4ffb321d0a4f51450ccb093af2d66b464b1160d1265490738 |
"""
Course Outline page in Studio.
"""
import datetime
from bok_choy.page_object import PageObject
from bok_choy.promise import EmptyPromise
from selenium.webdriver import ActionChains
from selenium.webdriver.support.ui import Select
from selenium.webdriver.common.keys import Keys
from common.test.acceptance.pages.c... | synergeticsedx/deployment-wipro | common/test/acceptance/pages/studio/overview.py | Python | agpl-3.0 | 38,396 | [
"VisIt"
] | 632ffc8ee42db3444e7c545bb8d750bde4ea4b88382ba71313c1c6d3d6688ea1 |
"""
SkCode figures tag definitions code.
"""
from gettext import gettext as _
from ..etree import TreeNode
from ..tools import slugify
from ..render import render_inner_text
class FigureCaptionTreeNode(TreeNode):
""" Figure caption tree node class. """
canonical_tag_name = 'figcaption'
alias_tag_names ... | TamiaLab/PySkCode | skcode/tags/figures.py | Python | agpl-3.0 | 6,227 | [
"VisIt"
] | 54d3c77e2efa0147d7f802e9e6027428bc1db9fececdf1b46d92aa978bb1c5c3 |
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