text stringlengths 12 1.05M | repo_name stringlengths 5 86 | path stringlengths 4 191 | language stringclasses 1
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import argparse
import datetime
import json
import logging
import os
import random
import subprocess
import time
import hashlib
import zipfile
from sys import stderr
import requests
import requests.exceptions
from selenium import webdriver
from selenium.webdriver.common.by import By
from selenium.webdriver.support.ui ... | Crunchy005/ADP-Autologin | autologin.py | Python | bsd-2-clause | 8,722 | [
"ESPResSo"
] | 695f92410e2f5c5847b445ffd765bf9650f17aadae5fe06bb0b2390377634505 |
##############################################################################
# MDTraj: A Python Library for Loading, Saving, and Manipulating
# Molecular Dynamics Trajectories.
# Copyright 2012-2013 Stanford University and the Authors
#
# Authors: Robert McGibbon
# Contributors: Kyle A Beauchamp
#
# MDTraj is... | marscher/mdtraj | MDTraj/geometry/angle.py | Python | lgpl-2.1 | 3,449 | [
"MDTraj"
] | b920dec5ff0edc4202fed81d933b79d80433283e956017a24afdc44eedcfcb66 |
import os
import os.path
import xbmcgui
xbmcgui.Dialog().ok("Gamestarter", "Installing UAE4ARM, please do not power off your Pi. A working internet connection is needed.")
script_file = os.path.realpath(__file__)
directory = os.path.dirname(script_file)
# xbmcgui.Dialog().ok("Gamestarter", "Done!")
# os.... | bite-your-idols/Gamestarter-Pi | repository.gamestarter/script.gamestarter/resources/bin/install_uae.py | Python | gpl-2.0 | 951 | [
"ADF"
] | d22549ec250f450268eb2496fe4d072d6e5336abdf469d9fc37f88404e599f15 |
# GWR Bandwidth selection class
#x_glob parameter does not yet do anything; it is for semiparametric
__author__ = "Taylor Oshan Tayoshan@gmail.com"
from pysal.model.spreg import user_output as USER
import numpy as np
from scipy.spatial.distance import pdist,squareform
from scipy.optimize import minimize_scalar
from... | lixun910/pysal | pysal/model/mgwr/sel_bw.py | Python | bsd-3-clause | 18,174 | [
"Gaussian"
] | 4a1978410a0ae1171a0178b9a6264a9063ce7668b92037863f6f7fbb067d582d |
""" codecs -- Python Codec Registry, API and helpers.
Written by Marc-Andre Lemburg (mal@lemburg.com).
(c) Copyright CNRI, All Rights Reserved. NO WARRANTY.
"""#"
import builtins, sys
### Registry and builtin stateless codec functions
try:
from _codecs import *
except ImportError as why:
raise SystemErr... | ArcherSys/ArcherSys | Lib/codecs.py | Python | mit | 35,923 | [
"FEFF"
] | 229f4c3479cc8936342784d21d8fe2e44e5cf0d5c50f4e8e8465a5c6279539e1 |
# $HeadURL: $
''' SMSAction
'''
from DIRAC import S_ERROR, S_OK
from DIRAC.ResourceStatusSystem.PolicySystem.Actions.BaseAction import BaseAction
#from DIRAC.ResourceStatusSystem.Utilities.InfoGetter import InfoGetter
__RCSID__ = '$Id: $'
class SMSAc... | vmendez/DIRAC | ResourceStatusSystem/PolicySystem/Actions/SMSAction.py | Python | gpl-3.0 | 3,014 | [
"DIRAC"
] | 0ce6c9c00706249c564e41013ad60d33f688cbb3f2eacab92d70441ebcfbaeec |
# coding=utf-8
# Copyright 2022 The Edward2 Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law o... | google/edward2 | experimental/rank1_bnns/resnet_cifar_model.py | Python | apache-2.0 | 7,810 | [
"Gaussian"
] | bbffabb3fa37fa109b7bf47ba1535800f5d09dc33705388c16756519b7972cd5 |
# -*- coding: utf-8 -*-
from acq4.util.debug import *
from acq4.devices.Device import *
import time, traceback, sys
from taskGUI import *
#from numpy import byte
import numpy
#from scipy.signal import resample, bessel, lfilter
import scipy.signal, scipy.ndimage
import acq4.util.advancedTypes as advancedTypes
from ... | tropp/acq4 | acq4/devices/NiDAQ/nidaq.py | Python | mit | 16,049 | [
"Gaussian"
] | ca6d6ef67268011050fc59ec19d5803121c46de2d829f9205bd5cb71bcfbfcf4 |
#!/usr/bin/env python2
# Solution to project euler problem 19
import time
from math import floor
"""
Gaussian algorithm to determine day of week
"""
def day_of_week(year, month, day):
"""
w = (d+floor(2.6*m-0.2)+y+floor(y/4)+floor(c/4)-2*c) mod 7
Y = year - 1 for January or February
Y = year for ot... | svb2357/projecteuler | 19/answer.py | Python | gpl-2.0 | 1,120 | [
"Gaussian"
] | ae0575ed0a59acf18af8233a40fd527a08d3129af631dd0431d60e48b4b79991 |
import unittest
import numpy
import numpy.testing
import numpy.random
import scipy
import math
import diffusion_analysis
import MDAnalysis
import os
import sys
class Test_anomalous_diffusion_non_linear_fit(unittest.TestCase):
def setUp(self):
self.linearly_increasing_time_array = numpy.arange(50)
... | tylerjereddy/diffusion_analysis_MD_simulations | test_diffusion_analysis.py | Python | mit | 8,380 | [
"MDAnalysis"
] | 5c212d9cffbd8ce44a5d16d728deeb1ecb1650237652e5db5987d97d2a0831cc |
"""PyMOL script generator.
The script syntax is the command language used by PyMOL (based on Python's cmd
module), not using the pymol API directly. You generate the script, then you
load the script in PyMOL and the pretty happens.
"""
import os.path
# ---------------------------------------------------------
# Map... | etal/cladecompare | cladecomparelib/pmlscript.py | Python | bsd-2-clause | 10,058 | [
"PyMOL"
] | c1be595c7eec1f47457be7d98e2a5fd8cf6cf377430f5af2cb388b262eba355b |
import numpy as np
import matplotlib.pyplot as plt
import matplotlib
import sens_calc as sens
import sys, os
from astropy.io import fits
import aplpy
from astropy.wcs import WCS
plt.ion()
telescope = sys.argv[1]
rootdir = '.'
bands = np.array([250, 350, 500]) # microns
t_map = np.array([10., 5., 3., 1]) # hours
t_dust... | sbg2133/miscellaneous_projects | galaxies/plot_gals_time.py | Python | gpl-3.0 | 4,294 | [
"BLAST"
] | af955047b6525583a4484c8fb0a6526a8717b7ddb1a943e9ecb3f7b74c293eb7 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
from __future__ import unicode_literals, division, print_function
import os
from pymatgen.util.testing import PymatgenTest
from pymatgen.core.structure import Structure
from pymatgen.core.units import Ha_to_eV... | matk86/pymatgen | pymatgen/io/abinit/tests/test_abiobjects.py | Python | mit | 5,613 | [
"ABINIT",
"pymatgen"
] | 57767e61b68b9e25ab0c811fc676af05638cd8266b870e6d900bc6605e9a6967 |
#!/usr/bin/env python3
from astropy.table import Table
import numpy
import matplotlib.pyplot as plt
from pyTinker import tinker
def generate_Tinker(mass, z1, z2, dz):
h = 0.7
# Initialize and generate the dn/dm
t = tinker.counts(
Om=0.3,
OL=0.7,
Ob=0.0456,
H0=100.0,
... | boada/planckClusters | analysis_op/plots/plot_cluster_forecast.py | Python | mit | 4,471 | [
"TINKER"
] | 161ffd7f844313b0de62307ca7bb4a197ba1af4e20b374523fa2ffff22375477 |
#pylint: disable=missing-docstring
####################################################################################################
# DO NOT MODIFY THIS HEADER #
# MOOSE - Multiphysics Object Oriented Simulation Environment ... | Chuban/moose | python/MooseDocs/html2latex/BasicExtension.py | Python | lgpl-2.1 | 5,070 | [
"MOOSE"
] | 5023993997b8f4ece88878321f39fb6cb53684c2f678824b9a8f8cd21212759c |
# -*- coding: utf-8 -*-
from __future__ import unicode_literals
from django.conf import settings
from django.conf.urls import include, url
from django.conf.urls.static import static
from django.contrib import admin
from django.views.generic import TemplateView
from django.views import defaults as default_views
from di... | emelkrml/dictionary2 | config/urls.py | Python | mit | 1,785 | [
"VisIt"
] | 8d9c0fb897d8ad8d90dd24240a1adefde087568b764b4b24e8f0c7f3f9fa6d02 |
global astrom
global tmpdir
import traceback, tempfile
#print tmpdir
#tmpdir = '/tmp/pkelly/'
astrom='solve-field'
import astropy, astropy.io.fits as pyfits
def length_swarp(SUPA,FLAT_TYPE,CHIPS):
import os, re, utilities, bashreader, sys, string
from copy import copy
from glob import glob
dict = get_f... | deapplegate/wtgpipeline | non_essentials/calc_test/calc_tmpsave.py | Python | mit | 211,856 | [
"Galaxy"
] | aaba622eceac9a3f39988450d5241446a6b537737dc54913d2fdb0eb48e0c3cf |
# Copyright (C) 2012,2013
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of t... | fedepad/espressopp | src/standard_system/Default.py | Python | gpl-3.0 | 2,317 | [
"ESPResSo"
] | 666894750eed102bb49b235e3be2c0ac53f5f87b4dd3d3e982104a0da61c2e9f |
import os
import numpy as np
from scipy import misc, ndimage
from skimage import exposure
__author__ = 'Daniel'
class Scanifier(object):
def run(self, imgin_path, imgout_path=None, increase_exposure=False):
imgin_path = self.__expand_user(imgin_path)
img = misc.imread(imgin_path)
img_bl... | idf/scanify | core/__init__.py | Python | bsd-3-clause | 1,529 | [
"Gaussian"
] | 51c7fb5c103f7f4e9d52de25d65742c31c43a412ff865f4895ede75754408dd6 |
# Copyright (c) 2012 The Chromium Authors. All rights reserved.
# Use of this source code is governed by a BSD-style license that can be
# found in the LICENSE file.
"""Provides an interface to communicate with the device via the adb command.
Assumes adb binary is currently on system path.
"""
# pylint: disable-all
... | appknox/xysec_adb | xysec_adb/pylib/android_commands.py | Python | apache-2.0 | 73,378 | [
"Galaxy"
] | a7d288398c02ed27ecc7fe1bc21e5b67e6cc8b574403848814a39a3de8c2417c |
#!/usr/bin/python
import tweetproc
import os
import io
from datetime import *
from tweetproc.sitesdata import *
import pprint
# Global variable used for processing
siteiter=-1
# Custom process for this script
def process(inputdir,outfilename,brtime1,brtime2):
# Empty dictionary to store the tweet counts f... | HPCGISLab/TwitterMethods | workflow-sites-to-bresponse.py | Python | bsd-3-clause | 3,713 | [
"Amber"
] | 0dbeb9aa3814c62296b04ce886ba58e9e719999b4bbfac3fd7397d2f344e87a7 |
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not u... | Laurawly/tvm-1 | gallery/how_to/work_with_microtvm/micro_ethosu.py | Python | apache-2.0 | 20,382 | [
"VisIt"
] | a89821493505aecb8fe13672f9a75cfe032ba0d154e0983c1908abeeadafa195 |
from __future__ import absolute_import
import atexit
import logging
from pprint import pformat
from tornado.options import define, options, parse_command_line
from celery.bin.base import Command
from . import settings
from .app import Flower
define("port", default=5555, help="run on the given port", type=int)
de... | andresriancho/flower | flower/command.py | Python | bsd-3-clause | 2,753 | [
"VisIt"
] | 96685e118650e31dfc869182cee11f39e9993c0c7d629277710a3d73eae66552 |
# -*- coding: utf-8 -*-
import numpy as np
from .utility import calculate_weighting_factor
from .calc import calculate_fr
from .pattern import Pattern
def i_q_peak(q, n, position, sigma, composition, element_1, element_2):
"""
Calculates the contribution of one element 1 - element 2 peak in real space to i(... | Luindil/Glassure | glassure/core/fitting.py | Python | mit | 3,261 | [
"Gaussian"
] | 598ceb6efab77361cc5825aa86cdba2451d656a2eb1aaa2474d041bf28f1a19e |
#!/usr/bin/env python
#
# Copyright 2012 Viewfinder Inc. All Rights Reserved.
"""Runs the Viewfinder watchdog.
"""
__author__ = 'matt@emailscrubbed.com (Matt Tracy)'
import logging
import os
import signal
import sys
import time
from functools import partial
from tornado import ioloop, httpclient, options
from scena... | 0359xiaodong/viewfinder | backend/watchdog/watchdog.py | Python | apache-2.0 | 10,339 | [
"VisIt"
] | 1e301af990cd31120f800a2fe6e006679ac82d65be60b296c3c3d94dd236e975 |
# -*- coding: utf-8 -*-
from __future__ import absolute_import
import datetime
from django.conf import settings
from django.http import HttpResponse
from django.test import TestCase
from django.utils import timezone
from mock import patch, MagicMock
from zerver.lib.test_helpers import MockLDAP
from confirmation.model... | jainayush975/zulip | zerver/tests/test_signup.py | Python | apache-2.0 | 69,459 | [
"VisIt"
] | 36f4a973c8a4dfb6b085c4b689de777438f09a5b21e600ecd6709fa69215f8f3 |
"""
Acceptance tests for Studio's Setting pages
"""
import re
from common.test.acceptance.pages.lms.create_mode import ModeCreationPage
from common.test.acceptance.pages.studio.settings_advanced import AdvancedSettingsPage
from common.test.acceptance.pages.studio.settings_certificates import CertificatesPage
from co... | cpennington/edx-platform | common/test/acceptance/tests/studio/test_studio_settings_certificates.py | Python | agpl-3.0 | 13,196 | [
"VisIt"
] | 4bde9100bdeb868cb10ed23044ef49219694ce137a016ea8e332856bb76f178a |
from gpiozero import TrafficLights, Button
from time import sleep
tl1 = TrafficLights(13, 19, 26)
tl2 = TrafficLights(21, 20, 16)
tl3 = TrafficLights(10, 9, 11)
tl4 = TrafficLights(7, 8, 25)
cross1 = TrafficLights(2, 3, 4)
cross2 = TrafficLights(18, 15, 14)
btn = Button(5)
def pressed():
print("Don't push the but... | waveform80/presentations | traffic_lights/example.py | Python | cc0-1.0 | 742 | [
"Amber"
] | 45b9b6ede82bf92fd9b2cf678dcacc5c31b7cbd9b56a71482b7d30f4e479773c |
from .. import factories as f
from wye.base.constants import WorkshopStatus
from .. utils import create_user_verify_login
def test_report_home_page(base_url, browser, outbox):
f.create_usertype(slug='tutor', display_name='tutor')
user = create_user_verify_login(base_url, browser, outbox)
location1 = f.cre... | pythonindia/wye | tests/functional/test_reports.py | Python | mit | 3,359 | [
"VisIt"
] | 52977d66d54b13f62969d1e6f3b93c69ae0dbb5ac0156fb99ad223c88f718b84 |
"""Tracker for zero-copy messages with 0MQ."""
#-----------------------------------------------------------------------------
# Copyright (C) 2013 Brian Granger, Min Ragan-Kelley
#
# This file is part of pyzmq
#
# Distributed under the terms of the New BSD License. The full license is in
# the file COPYING.BSD, d... | ellisonbg/pyzmq | zmq/sugar/tracker.py | Python | lgpl-3.0 | 4,015 | [
"Brian"
] | 7d98d902a5a93eb9f9346ec8837e68b26edc41b8f0c1920e93eaa54e2d710d90 |
import numpy as np
import sys
import os
import time
from ase.units import Bohr
from ase.structure import bulk
from gpaw import GPAW
from gpaw.atom.basis import BasisMaker
from gpaw.response.df import DF
from gpaw.mpi import serial_comm, rank, size
from gpaw.utilities import devnull
if rank != 0:
sys.stdout = devnul... | ajylee/gpaw-rtxs | gpaw/test/aluminum_EELS.py | Python | gpl-3.0 | 1,456 | [
"ASE",
"GPAW"
] | e06506a2c3bb0a070fd939ad18bdfc188d7e311eee97e05e2808279bd1960ba4 |
import json
from hs_build_tools.nose import eq_,ok_
from hashkernel.bakery import Cake, CakeRole, CakeType, CakePath
from hashstore.tests import (sqlite_q, TestSetup, file_set1, file_set2,
prep_mount, update_mount, fileset1_cake, fileset2_cake)
import os
from time import sleep
import urllib.request
import logging... | walnutgeek/hashstore | hashstore/bakery/tests/server_tests.py | Python | apache-2.0 | 8,661 | [
"NEURON"
] | 0ab17914a1a87326d98ea6740eea5fb6a9a76f5683ca97d5caf8cd6820e7447c |
# -*- Mode:Python; indent-tabs-mode:nil; tab-width:4 -*-
#
# Copyright (C) 2019-2020 Canonical Ltd
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License version 3 as
# published by the Free Software Foundation.
#
# This program is distributed in ... | ubuntu-core/snapcraft | tests/unit/plugins/v1/test_crystal.py | Python | gpl-3.0 | 8,050 | [
"CRYSTAL"
] | c6a0d62d63ad1f1ecbd88be06b470d2c1f6c9a90df31e0926e43ab7c2439c8fe |
# PyTransit: fast and easy exoplanet transit modelling in Python.
# Copyright (C) 2010-2020 Hannu Parviainen
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the Licen... | hpparvi/PyTransit | pytransit/models/numba/gdmodel.py | Python | gpl-2.0 | 16,667 | [
"FEFF"
] | 9300debfc3c5b58836300eda2de98cc03ed506ee51267a34d5a4d6afaa209de3 |
"""
SECTION 1 : Load and setup data for training
the datasets separated in two files from originai datasets:
iris_train.csv = datasets for training purpose, 80% from the original data
iris_test.csv = datasets for testing purpose, 20% from the original data
"""
import pandas as pd
#load
datatrain = pd.read_csv('iris_... | rianrajagede/simplesamplecode | Tensorflow/iris_tf_v2.py | Python | mit | 3,066 | [
"NEURON"
] | 4f24db4a30826a9d54397fb7b1ad0592e4bba223a8e059372740209290fb4565 |
"""
Acceptance tests for Studio related to the split_test module.
"""
import json
import math
from unittest import skip
from nose.plugins.attrib import attr
from selenium.webdriver.support.ui import Select
from xmodule.partitions.partitions import Group, UserPartition
from bok_choy.promise import Promise, EmptyPromis... | c0710204/edx-platform | common/test/acceptance/tests/studio/test_studio_split_test.py | Python | agpl-3.0 | 45,159 | [
"VisIt"
] | fbe68f8208f913271967bb866fddefca79a9480185f2892ff76580a04a9c7a99 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
# freeseer - vga/presentation capture software
#
# Copyright (C) 2011, 2013, 2014 Free and Open Source Software Learning Centre
# http://fosslc.org
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public L... | Freeseer/freeseer | src/freeseer/framework/config/options.py | Python | gpl-3.0 | 4,157 | [
"VisIt"
] | 2454b70fae863263bc7995fb7005c4c91664e2588325f5b66ffeabe64a80ec8d |
#!/usr/bin/env python
# vim: set fileencoding=utf-8 :
# Elie Khoury <Elie.Khoury@idiap.ch>
# Fri Aug 30 11:53:40 CEST 2013
#
# Copyright (C) 2012-2013 Idiap Research Institute, Martigny, Switzerland
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public ... | antoniorohit/xbob.spkrec | xbob/spkrec/tools/UBMGMMRegular.py | Python | gpl-3.0 | 2,668 | [
"Gaussian"
] | 521d54875d6fd2fb7e29ccc6cfeb71c11f5c359e415df5dc5225f5c1b4553490 |
# ______________________________________________________________________
from .bytecode_visitor import BytecodeFlowVisitor, BenignBytecodeVisitorMixin
# ______________________________________________________________________
synthetic_opname = []
synthetic_opmap = {}
def def_synth_op (opname):
global synthetic_o... | llvmpy/llvmpy | llpython/phi_injector.py | Python | bsd-3-clause | 5,661 | [
"VisIt"
] | c18b09b7603a4e3a4004c54d8f02b03b68a95fc856a16f247a6ba8696db9f55f |
#!/usr/bin/env python
"""
Probabilistic matrix factorization.
"""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
import edward as ed
import tensorflow as tf
import numpy as np
from edward.models import Variational, Normal
from edward.stats import norm, poi... | ruohoruotsi/Wavelet-Tree-Synth | edward-examples/matrix_factorization.py | Python | gpl-2.0 | 2,573 | [
"Gaussian"
] | 6dc987cbe98b04a26ddbbe462293e603086c121ca945565d1b715c961b42c357 |
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
import unittest
from pymatgen.core import Structure
from pymatgen.util.string import (
Stringify,
charge_string,
disordered_formula,
formula_double_format,
htmlify,
latexify,
latexify_spacegroup,
... | materialsproject/pymatgen | pymatgen/util/tests/test_string.py | Python | mit | 4,743 | [
"pymatgen"
] | c712ea8749040b79b96e60b7b3538650ebf33e24be71c0fbfd873b45a062b659 |
#!/usr/bin/env python
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 3 of the License, or
# (at your option) any later version.
#
# Written (W) 2013 Evangelos Anagnostopo... | MikeLing/shogun | applications/classification/random_fourier_classification.py | Python | gpl-3.0 | 3,540 | [
"Gaussian"
] | fcedc8e20a4b4797c955b2cfe5f269d34725bf587c0c0112109a0f663214ce4a |
"""
This module integrates the Multi-Fidelity Co-Kriging method described in
[LeGratiet2013].
(Author: Remi Vauclin <vauclin.remi@gmail.com>)
This code was implemented using the package scikit-learn as basis.
(Author: Vincent Dubourg <vincent.dubourg@gmail.com>)
OpenMDAO adaptation. Regression and correlation functi... | HyperloopTeam/FullOpenMDAO | lib/python2.7/site-packages/openmdao.lib-0.13.0-py2.7.egg/openmdao/lib/surrogatemodels/multifi_cokriging_surrogate.py | Python | gpl-2.0 | 31,252 | [
"Gaussian"
] | 1403f09fdbe5b7be94a10563239d6490311d46457acb2d4c359fb034c5ec28e4 |
# (c) 2017, Brian Coca
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# Ansible is dist... | grimmjow8/ansible | lib/ansible/plugins/cache/yaml.py | Python | gpl-3.0 | 1,427 | [
"Brian"
] | 7da41428dd835258b7c10380da6bd49bfc7df02f382ea1cb68fd439dedf591f1 |
#!/usr/bin/env python3
#* This file is part of the MOOSE framework
#* https://www.mooseframework.org
#*
#* All rights reserved, see COPYRIGHT for full restrictions
#* https://github.com/idaholab/moose/blob/master/COPYRIGHT
#*
#* Licensed under LGPL 2.1, please see LICENSE for details
#* https://www.gnu.org/licenses/lgp... | nuclear-wizard/moose | modules/geochemistry/python/dbutils.py | Python | lgpl-2.1 | 3,575 | [
"MOOSE"
] | 92ecdae0fe7e4b5122d7e2ed8b9a2370b7546f9f358ece6c6c2ab744bbf3cf12 |
from __future__ import print_function
from builtins import range
"""
SECTION 1 : Load and setup data for training
the datasets separated in two files from originai datasets:
iris_train.csv = datasets for training purpose, 80% from the original data
iris_test.csv = datasets for testing purpose, 20% from the original ... | rianrajagede/simplesamplecode | Pytorch/iris_pytorch.py | Python | mit | 3,000 | [
"NEURON"
] | 72f482e84b6570959911a2aa060e857317d6c86928dc9e3cd585bf989fdaac40 |
from __future__ import print_function
import json
import os
import numpy as np
from ..utils import Util2d, Util3d, Transient2d, MfList, \
HeadFile, CellBudgetFile, UcnFile, FormattedHeadFile
from ..mbase import BaseModel
from ..pakbase import Package
from . import NetCdf, netcdf
from . import shapefile_uti... | brclark-usgs/flopy | flopy/export/utils.py | Python | bsd-3-clause | 37,058 | [
"NetCDF"
] | 15359fee0c06e16755bf72c66f9f857dd4035f97cb6d8b126ce23f67c09599bc |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2021 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute it and/or modify
#... | jturney/psi4 | psi4/share/psi4/databases/A24.py | Python | lgpl-3.0 | 29,690 | [
"Psi4"
] | c9f3171e8712d0b7c1f12716318ea8084398b3c3c15eb35607f4a1b0bfc409d4 |
"""
Tests i18n in courseware
"""
import json
import re
import six
from django.conf import settings
from django.contrib.auth.models import User # lint-amnesty, pylint: disable=imported-auth-user
from django.test.client import Client
from django.urls import reverse, reverse_lazy
from django.utils import translation
... | stvstnfrd/edx-platform | lms/djangoapps/courseware/tests/test_i18n.py | Python | agpl-3.0 | 9,425 | [
"VisIt"
] | 4ffe058a97a55525b31c8e274c1266139be3b7d9b11ccc0dd8a033a1c30b8b2b |
# -*- coding: utf-8 -*-
"""
Created on Thu Jan 09 11:51:10 2014
@author: Lam H. Dao <lam(dot)dao(at)nih(dot)gov>
<daohailam(at)yahoo(dot)com>
"""
import numpy as np
from StdFunctions import StdFx
#------------------------------------------------------------------------------
class WinFx(object):... | lamdao/vipy | WinFunctions.py | Python | gpl-3.0 | 1,659 | [
"Gaussian"
] | 6693e65ee2a1b40fdcd4bc8d7ddadbb27388e7469482d8b8765113ff2b473b93 |
"""
The B{0install slave} command-line interface.
"""
# Copyright (C) 2013, Thomas Leonard
# See the README file for details, or visit http://0install.net.
from __future__ import print_function
import sys, os, collections
from zeroinstall import _, logger, SafeException
from zeroinstall.cmd import UsageError
from z... | pombredanne/0install | zeroinstall/cmd/slave.py | Python | lgpl-2.1 | 21,919 | [
"VisIt"
] | 3c0ce115c8b814566b54dcd8a0d5b82621f681f50de3dee897bf78a48900ebc5 |
# (c) 2012-2018, Ansible by Red Hat
#
# This file is part of Ansible Galaxy
#
# Ansible Galaxy is free software: you can redistribute it and/or modify
# it under the terms of the Apache License as published by
# the Apache Software Foundation, either version 2 of the License, or
# (at your option) any later version.
#
... | chouseknecht/galaxy | galaxy/settings/__init__.py | Python | apache-2.0 | 1,344 | [
"Galaxy"
] | de87e698921c35c087840caf94e2c7788395172f2f889cd520215dc03c9d87ea |
import copy
import hashlib
import json
import multiprocessing
import os.path
import random
import shutil
import string
import tempfile
from os import mkdir
from os.path import exists
from subprocess import CalledProcessError, check_call, check_output
import pkgpanda.build.constants
import pkgpanda.build.src_fetchers
f... | xinxian0458/dcos | pkgpanda/build/__init__.py | Python | apache-2.0 | 48,396 | [
"VisIt"
] | fd842b1343a5a5b0603400398642b21ef214fa648417d9d7d6a0587addc06513 |
#!/usr/bin/env python
#
# Data manager for reference data for the 'humann2' Galaxy tools
import datetime
import json
import optparse
import os
import shutil
import subprocess
import sys
HUMANN2_REFERENCE_DATA = {
"full": "Full",
"DEMO": "Demo",
"uniref50_diamond": "Full UniRef50",
"uniref50_ec_filtere... | pjbriggs/tools-iuc | deprecated/data_managers/data_manager_humann2_database_downloader/data_manager/data_manager_humann2_download.py | Python | mit | 5,214 | [
"Galaxy"
] | 6b7428314d71030a5a3c3ff711c55243fb9fee190f1ac19aab85b33ef1a55c7f |
import os
os.environ.setdefault('DJANGO_SETTINGS_MODULE',
'config.settings.local')
import sys
import django
django.setup()
from django.conf import settings
from django.contrib.auth.models import check_password
from django.contrib.auth import authenticate
from items.models import BaseItem
from it... | abirafdirp/inventory | inventory/populate_db.py | Python | bsd-3-clause | 4,473 | [
"Galaxy"
] | c743988658c5c775338abe819860f6e8a3771f5a0f2ff1458a059c502ab70178 |
#!/usr/bin/env python
"""
Restart DIRAC component using runsvctrl utility
"""
__RCSID__ = "$Id$"
#
from DIRAC.Core.Base import Script
Script.disableCS()
Script.setUsageMessage( '\n'.join( [ __doc__.split( '\n' )[1],
'Usage:',
' %s [option|cfgf... | Andrew-McNab-UK/DIRAC | FrameworkSystem/scripts/dirac-restart-component.py | Python | gpl-3.0 | 1,224 | [
"DIRAC"
] | 8c9f968386df432bd51123e6f64512775314215a343af4ca5f3aaf98a5dc4d2f |
##
# Copyright 2009-2021 Ghent University
#
# This file is part of EasyBuild,
# originally created by the HPC team of Ghent University (http://ugent.be/hpc/en),
# with support of Ghent University (http://ugent.be/hpc),
# the Flemish Supercomputer Centre (VSC) (https://www.vscentrum.be),
# Flemish Research Foundation (F... | boegel/easybuild-easyblocks | easybuild/easyblocks/w/wien2k.py | Python | gpl-2.0 | 26,730 | [
"WIEN2k"
] | be94f8c16256460d1062df4c9cf936e34c429d15f7ca4b2c5aef56e3fbc83023 |
""" Tools for using spherical harmonic models to fit diffusion data
References
----------
Aganj, I., et. al. 2009. ODF Reconstruction in Q-Ball Imaging With Solid
Angle Consideration.
Descoteaux, M., et. al. 2007. Regularized, fast, and robust analytical
Q-ball imaging.
Tristan-Vega, A., et. al. 2010. A new me... | beni55/dipy | dipy/reconst/shm.py | Python | bsd-3-clause | 30,473 | [
"DIRAC"
] | bbfcbc77234c6879e122a35ff3699b7ec9c0c18e1de1bc2b63b0f7626e4ec46d |
# Copyright Iris contributors
#
# This file is part of Iris and is released under the LGPL license.
# See COPYING and COPYING.LESSER in the root of the repository for full
# licensing details.
"""Unit tests for the `iris.fileformats.netcdf._load_cube` function."""
# Import iris.tests first so that some things can be i... | pp-mo/iris | lib/iris/tests/unit/fileformats/netcdf/test__load_cube.py | Python | lgpl-3.0 | 6,671 | [
"NetCDF"
] | 19385dc83a1f98403cf3ae4654d03b9626c5c9f3cb897045033debc484e60b02 |
# Copyright 2020 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, ... | google-research/world_models | planners/planners.py | Python | apache-2.0 | 23,775 | [
"Gaussian"
] | 6314affafb3915f10474cf17780e3260787eeff10beda7c76d0efcaeef790244 |
from module_kits.misc_kit.mixins import SubjectMixin
import geometry
from module_base import ModuleBase
from module_mixins import IntrospectModuleMixin
import module_utils
import Measure2DFrame
reload(Measure2DFrame)
import vtk
import vtktudoss
import wx
class M2DMeasurementInfo:
pass
class M2DWidget:
"""Cla... | nagyistoce/devide | modules/viewers/Measure2D.py | Python | bsd-3-clause | 15,370 | [
"VTK"
] | 861405975da143ced932f9499a16e158a759c7030b9ecb87de0e16628546a69e |
from django.test import TransactionTestCase
from django.contrib.auth.models import Group
from django.conf import settings
from hs_core import hydroshare
from hs_core.hydroshare import utils
from hs_core.models import CoreMetaData
from hs_core.testing import TestCaseCommonUtilities
class TestNetcdfMetaData(TestCaseCo... | FescueFungiShare/hydroshare | hs_app_netCDF/tests/test_netcdf_metadata_user_zone.py | Python | bsd-3-clause | 6,489 | [
"NetCDF"
] | f89f8c76e6e39e1344c51c0d8e9a6666b60f77c4f19914734d4207dde175b8fc |
# -*- coding: utf-8 -*-
""" Tests for student account views. """
import logging
import re
from unittest import skipUnless
from urllib import urlencode
import ddt
import mock
import pytest
from django.conf import settings
from django.contrib import messages
from django.contrib.auth import get_user_model
from django.co... | Stanford-Online/edx-platform | lms/djangoapps/student_account/test/test_views.py | Python | agpl-3.0 | 48,142 | [
"VisIt"
] | c381115cc928fe31887b588dcb1769e167861b93d99a7cbb52d72d18b91ac6fa |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2016 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of ... | kannon92/psi4 | psi4/driver/qcdb/cov_radii.py | Python | gpl-2.0 | 5,363 | [
"Psi4"
] | 344ab9ff4aab6af5db022017882c7ef770c376b26dbafeda2a9aa6b3356d57ad |
###########################################################################
#
# This program is part of Zenoss Core, an open source monitoring platform.
# Copyright (C) 2007, Zenoss Inc.
#
# This program is free software; you can redistribute it and/or modify it
# under the terms of the GNU General Public License versi... | anksp21/Community-Zenpacks | ZenPacks.AndreaConsadori.MRV/ZenPacks/AndreaConsadori/MRV/modeler/plugins/MrvL2L4DeviceMap.py | Python | gpl-2.0 | 1,378 | [
"VisIt"
] | 6939a638f8a593fbb6a7d5ef84ba534cfdc71f83242be239ea19f2545da9cbd2 |
#!/usr/bin/env python
from __future__ import print_function
import numpy as N
import libRun as LR
import os
def build_cmd(patches, config, filt, input, output):
cmd = "jointcalCoadd.py %s --output %s " % (input, output) + patches + " @" + \
filt + ".list" + " --configfile " + config + " --clobber-conf... | LSSTDESC/ReprocessingTaskForce | scripts/run_jointcalCoadd.py | Python | gpl-2.0 | 2,317 | [
"VisIt"
] | 6d861b5df5b1a8d13e82f6fa6a222c4f9c8f0d96c6c9b89d9bcdb92001776fdf |
# FreeCAD TemplatePyMod module
# (c) 2010 Werner Mayer LGPL
"""
The module can be executed with:
FreeCAD -P <path_to_file> Automation.py
FreeCADCmd -P <path_to_file> Automation.py
"""
import FreeCAD, Part
import os
import tempfile
def makeSnapshotWithGui():
from PySide import QtGui
import FreeCADG... | sanguinariojoe/FreeCAD | src/Mod/TemplatePyMod/Automation.py | Python | lgpl-2.1 | 2,533 | [
"CRYSTAL"
] | 8d1e5228dc8934e36d855c2ec11b8e5c594a37e639d3bbe5806aca52cd274636 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
This module implements plotter for DOS and band structure.
"""
import logging
import math
import itertools
import warnings
from collections import OrderedDict
import numpy as np
from monty.json import jsa... | gVallverdu/pymatgen | pymatgen/electronic_structure/plotter.py | Python | mit | 183,086 | [
"BoltzTrap",
"CRYSTAL",
"Gaussian",
"Mayavi",
"VASP",
"pymatgen"
] | d9d7ea4680516e596e28bb31f1190c784044869c056ce869f66c6bce768e2702 |
#
# The Python Imaging Library.
# $Id$
#
# the Image class wrapper
#
# partial release history:
# 1995-09-09 fl Created
# 1996-03-11 fl PIL release 0.0 (proof of concept)
# 1996-04-30 fl PIL release 0.1b1
# 1999-07-28 fl PIL release 1.0 final
# 2000-06-07 fl PIL release 1.1
# 2000-10-20 fl PIL release 1.1.1... | whitehorse-io/encarnia | pyenv/lib/python2.7/site-packages/PIL/Image.py | Python | mit | 82,194 | [
"Gaussian"
] | 8e09aa8390ec76d9ec390fa91a4ddf9845017d3af1b2a4453a2b961cbfb311d1 |
# This Source Code Form is subject to the terms of the Mozilla Public
# License, v. 2.0. If a copy of the MPL was not distributed with this
# file, You can obtain one at https://mozilla.org/MPL/2.0/.
"""
Define a common VASP Sile
"""
from ..sile import Sile, SileCDF, SileBin
from sisl._internal import set_module
import... | zerothi/sisl | sisl/io/vasp/sile.py | Python | mpl-2.0 | 1,772 | [
"VASP"
] | 03a7f14c38ee5325958e68acbcf873c57d19360247579dea214ca938074fa6a0 |
import os
from lutris.runners.runner import Runner
class virtualjaguar(Runner):
description = "Atari Jaguar emulator"
human_name = "Virtual Jaguar"
platforms = ['Atari Jaguar']
runnable_alone = True
runner_executable = 'virtualjaguar/virtualjaguar'
game_options = [
{
"optio... | RobLoach/lutris | lutris/runners/virtualjaguar.py | Python | gpl-3.0 | 984 | [
"Jaguar"
] | 75c0a2ba07e34ea4a51316382054073a415f478724046109fda42d12f86dff1c |
"""
Maximum likelihood covariance estimator.
"""
# Author: Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Gael Varoquaux <gael.varoquaux@normalesup.org>
# Virgile Fritsch <virgile.fritsch@inria.fr>
#
# License: BSD 3 clause
# avoid division truncation
import warnings
import numpy as np
from scipy... | kevin-intel/scikit-learn | sklearn/covariance/_empirical_covariance.py | Python | bsd-3-clause | 10,751 | [
"Gaussian"
] | 5e13f3c32260a6fdfd0f6bfd53013238d4a385096caa5594d60bf595239ac89d |
"""
Views related to the Custom Courses feature.
"""
import csv
import datetime
import functools
import json
import logging
from copy import deepcopy
from cStringIO import StringIO
import pytz
from ccx_keys.locator import CCXLocator
from django.conf import settings
from django.contrib import messages
from django.contr... | philanthropy-u/edx-platform | lms/djangoapps/ccx/views.py | Python | agpl-3.0 | 21,546 | [
"VisIt"
] | 6f5d8fb9662e9cc7f5f3f96aa9081ec390f248b1d1fc753f09da7a5add650b1a |
# DistTarBuilder: tool to generate tar files using SCons
# Copyright (C) 2005, 2006 Matthew A. Nicholson
# Copyright (C) 2006-2010 John Pye
#
# This file is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License version 2.1 as published by the Free Software... | sly2j/analyzer | site_scons/disttar.py | Python | gpl-2.0 | 4,719 | [
"VisIt"
] | b928962245ebb2bcaff6b8afe90b617c687e5fb09b1ee014ed890f525e064ac0 |
# Copyright 2016 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | sandeepdsouza93/TensorFlow-15712 | tensorflow/contrib/learn/python/learn/learn_io/graph_io.py | Python | apache-2.0 | 32,061 | [
"VisIt"
] | 6190e94a2c7cc0e6f130b704e1aa1c6a30ae054e102381446a7b6fe3dad1ccd6 |
from setuptools import setup
from codecs import open
from os import path
here = path.abspath(path.dirname(__file__))
with open(path.join(here, 'README.rst'), encoding='utf-8') as f:
long_description = f.read()
setup(
name='Binsanity', # This is the name of your PyPI-package.
version='0.5.4',
descript... | edgraham/BinSanity | setup.py | Python | gpl-3.0 | 967 | [
"Biopython"
] | 0db53717dd3b3b1d8632cfda6f376db93a74648bdbf453175d910e96b6f1aa15 |
__author__ = 'Robbie'
search_placeholders = [
"why was the guy who created the libyan flag so lazy....",
"people getting attacked by squirrels....",
"dream with squirrels attacking....",
"why are red and grey squirrels feuding....",
"anger management for midget wrestlers....",
"how can kenny di... | robbielynch/RoblySearch | robly_data/random_search_placeholder.py | Python | gpl-2.0 | 1,728 | [
"Octopus"
] | 48b43ff30e4f4fc100d6e684396e2d510f00d4faf3323df1ba39ac73cd3605d7 |
from numpy.testing import TestCase, run_module_suite, assert_,\
assert_raises
from numpy import random
from numpy.compat import asbytes
import numpy as np
class TestMultinomial(TestCase):
def test_basic(self):
random.multinomial(100, [0.2, 0.8])
def test_zero_probability(self):
random... | pelson/numpy | numpy/random/tests/test_random.py | Python | bsd-3-clause | 22,199 | [
"Gaussian"
] | 9d17b978edfb4adb1a6e7de80c911fd02bcd024a658ebb24e2ef5d55e2f22ab2 |
#!/usr/bin/env python
########################################
#Globale Karte fuer tests
########################################
from mpl_toolkits.axes_grid1 import ImageGrid
import numpy as np
import math
import pylab as pl
import Scientific.IO.NetCDF as sion
import matplotlib as mpl
import matplotlib.pyplot as plt... | CopyChat/Plotting | Python/colorbar.py | Python | gpl-3.0 | 2,022 | [
"NetCDF"
] | 75d1830495e4a18a71506d32b0a06e7356a828c9cfdf35c683ce749b3ec6227f |
# coding: utf-8
"""Test mdn.specifications"""
from __future__ import unicode_literals
from webplatformcompat.models import Section
from mdn.html import HTMLText
from mdn.kumascript import KumaVisitor, SpecName, kumascript_grammar
from mdn.specifications import (
SpecSectionExtractor, Spec2Visitor, SpecDescVisitor... | renoirb/browsercompat | mdn/tests/test_specifications.py | Python | mpl-2.0 | 19,675 | [
"VisIt"
] | 7a7f212ef88619abca49461f48c2625e91acc0bcad2325c5023bf6244917aee9 |
"""
Created on 07.08.2010
@author: RevEn
This module provides functionality to train and test
Cascade Correlation Neural Networks (Fahlman and Libiere, 1990)
"""
import pyopencl
import numpy
class CascadeCorrelationNeuralNetwork( object ):
"""
Cascaded Correlation Neural Network.
This class manages... | reven86/gpgpu-neuralnet | nn/cascade.py | Python | gpl-3.0 | 2,554 | [
"NEURON"
] | f7af187933f11acf7ed9942be0c54f4dbbc81a4daf50effb8feef129074e660c |
########################################################################
# $HeadURL$
# File : VirtualMachineContextualization.py
# Author : Victor Mendez
########################################################################
"""
The VirtualMachineContextualization agent is used for the asyncronous vm contextualiz... | vmendez/VMDIRAC | WorkloadManagementSystem/Agent/VirtualMachineContextualization.py | Python | gpl-3.0 | 4,706 | [
"DIRAC"
] | a3d7589d9d9c159b200ee590aacff1a07f888cab78d9113c56a757205d92b5e0 |
"""
Module to call mcsqs, distributed with AT-AT
https://www.brown.edu/Departments/Engineering/Labs/avdw/atat/
"""
import os
import warnings
from subprocess import Popen, TimeoutExpired
from typing import Dict, Union, List, NamedTuple, Optional
from pathlib import Path
from monty.dev import requires
from monty.os.pat... | mbkumar/pymatgen | pymatgen/command_line/mcsqs_caller.py | Python | mit | 8,263 | [
"pymatgen"
] | c492088d45ffb4b104f9929ec9a70ae6fcd0e9c99545606725285bec08e46f27 |
"""Molecular Dynamics."""
import numpy as np
from ase.optimize import Dynamics
from ase.data import atomic_masses
class MolecularDynamics(Dynamics):
"""Base-class for all MD classes."""
def __init__(self, atoms, timestep, trajectory):
Dynamics.__init__(self, atoms, logfile=None, trajectory=trajector... | freephys/python_ase | ase/md/__init__.py | Python | gpl-3.0 | 766 | [
"ASE"
] | 542909794a2e58be70ee49ab7e9a4994099688299a4e4d771b1a80381c98bc1d |
"""Process provided GeoJSON files into the database.
Brian Gelder provides me some archive of processed HUC12s, this archive is
dumped to disk and then glob'd by this script. It then creates a `myhucs.txt`
file, which provides the downstream scripts the data domain to limit processing
to.
python flowpath_importe... | akrherz/idep | scripts/import/flowpath_importer.py | Python | mit | 8,396 | [
"Brian"
] | f1f898e0b68a88bd106de8f0d1c7b3e176043554a6b02721da94e5259cb7c36b |
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2000-2007 Donald N. Allingham
# Copyright (C) 2008 Brian G. Matherly
# Copyright (C) 2008-2009 Gary Burton
# Copyright (C) 2008 Robert Cheramy <robert@cheramy.net>
# Copyright (C) 2010 Jakim Friant
# Copyright (C) 2010 Nick Ha... | Nick-Hall/gramps | gramps/plugins/export/exportgedcom.py | Python | gpl-2.0 | 61,348 | [
"Brian"
] | 6118c3ed35529aa88c4e38d12d7622f5826b89131c579370e6026aa8256e385e |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
from django import forms
from django.contrib.auth.models import Group
from django.urls import reverse
from django.utils import timezone
from django.core.exceptions import ValidationError
from django.conf import settings
from crispy_forms.helper import FormHelper
from cris... | gwu-libraries/sfm-ui | sfm/ui/forms.py | Python | mit | 45,051 | [
"Firefly"
] | cd4df4870a1c0a494c59de7d1f9bf99e004ac2ff920e14257c305666cc3c31d4 |
""" Convenient lineshape definitions.
Several different lineshapes which are frequently found in spectroscopy.
These can be used to build more complex models.
"""
from math import sqrt, log
import numpy as np
from scipy.special import wofz
def lorentzian(x, gamma):
"""Evaluation of a lorentzian or cauchy distrib... | l3enny/lasana | lineshapes.py | Python | mit | 1,462 | [
"Gaussian"
] | f71893e3066358689b4400e814e5d7ce9506ee37cbe2b8b93908427c70d8ae44 |
"""
Module for testing indtest module.
"""
__author__ = 'wittawat'
import numpy as np
import matplotlib.pyplot as plt
import fsic.data as data
import fsic.feature as fea
import fsic.util as util
import fsic.kernel as kernel
import fsic.indtest as it
import fsic.glo as glo
import scipy.stats as stats
import unittest
... | Diviyan-Kalainathan/dependency_criteria | lib/fsic/test/test_indtest.py | Python | mit | 8,139 | [
"Gaussian"
] | 212b6c60b7463eed6aa4685478a2a933a78f8e2d7b1a21b2b14b3f90b216da0b |
import sys
from xml.dom.minidom import parseString
from dicttoxml import dicttoxml
import string
import random
import shelve
import numpy as np
import scipy.sparse as sparse
import cPickle as pickle
from collections import defaultdict, namedtuple
def randomString(length=16):
return "".join([random.choice(string.lett... | clinicalml/anchorExplorer | generate_patients.py | Python | bsd-2-clause | 1,528 | [
"VisIt"
] | 201ff25edcad60871dbbd9857f6eb946b3962162d7425ebb96d5592ac4f674c8 |
# Author: Suyog Dutt Jain <suyog.jain@aero.iitb.ac.in>
# Prabhu Ramachandran <prabhu_r@users.sf.net>
# Copyright (c) 2008-2015, Enthought, Inc.
# License: BSD Style.
# Standard library imports.
from os.path import abspath
from io import BytesIO
import numpy
import unittest
# Enthought library imports.
from m... | dmsurti/mayavi | mayavi/tests/test_builtin_surface.py | Python | bsd-3-clause | 4,128 | [
"Mayavi"
] | 1b5de47f7de1194fc0e5bb5f33ff2bf62a1212aec8aec6c6b4d15e9291e73eab |
### Here all kinds of fitting
from __future__ import print_function
try:
from ..Priithon.all import N, U
except ValueError:
from Priithon.all import N, U
try:
from . import imgFilters, imgGeo
except ValueError:
from PriCommon import imgFilters, imgGeo
except ImportError: # python 2
import imgFilters... | macronucleus/chromagnon | Chromagnon/PriCommon/imgFit.py | Python | mit | 20,082 | [
"Gaussian"
] | 91db9e71282a6190330863c5becdb9597dda6e839373845803e37f17a18fe5ff |
import pickle
import datetime
import nltk
import pandas as pd
import numpy as np
import matplotlib.pyplot as plt
import gensim
import sys
from itertools import chain
from functools import reduce
from collections import Counter
from multiprocessing import Pool
class WTVTimeline():
def __init__(self, *args, **... | devincornell/semanticanlysis | timelines.py | Python | mit | 6,401 | [
"Gaussian"
] | c66eea8a9e4f8ffd36e12dd31be71c0ad304b4b8246684856d73eff9e2f2f1ce |
import ocl as cam
import camvtk
import time
import vtk
import math
import datetime
# 2018.08: Epos not wrapped
def drawellipse(myscreen, ellcenter, a_axis, b_axis):
resolution=50
for n in range(0,resolution):
angle1= (float(n)/float(resolution))*2*math.pi
angle2= (float(n+1)/float(resolution))... | aewallin/opencamlib | examples/python/offset-ellipse/oellipse5_tst.py | Python | lgpl-2.1 | 9,492 | [
"VTK"
] | 2d79d617f4f5650cf5657988b86176d58d2219002a8a8285c3bed873b880ee17 |
"""
Acceptance tests for the teams feature.
"""
import json
import random
import time
from dateutil.parser import parse
import ddt
from flaky import flaky
from nose.plugins.attrib import attr
from selenium.common.exceptions import TimeoutException
from uuid import uuid4
from ..helpers import get_modal_alert, EventsTe... | ovnicraft/edx-platform | common/test/acceptance/tests/lms/test_teams.py | Python | agpl-3.0 | 82,549 | [
"VisIt"
] | 2847440b539a35aa126269c31c8808f621c767123e44ad14eaefb3ccdc0f305c |
# -*- coding: ISO-8859-1 -*-
# Copyright 2010 Dirk Holtwick, holtwick.it
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unl... | altalang/pisa | sx/pisa3/pisa_parser.py | Python | apache-2.0 | 24,402 | [
"VisIt"
] | feab277d98460235f14f542e334a96d1de55a7e4a42fbcae6ddff67727bb5ba5 |
# -*- coding: utf-8 -*-
r"""Symmetry operations
"""
import numpy as np
from ..constants import symmetry
space_groups = symmetry()['space_groups']
class SpaceGroup(object):
r"""Class defining a space group of a crystal
Attributes
----------
full_name
generators
group_number
hm_symbol
... | granrothge/neutronpy | neutronpy/crystal/symmetry.py | Python | mit | 7,258 | [
"CRYSTAL"
] | 7b1b56af128b4a460acf1c4e98b7aa8f1917c47d62e6f512fa74fca19fdae0b8 |
"""Decorator for Biopython parsers."""
from __future__ import (absolute_import, division,
print_function, unicode_literals)
from builtins import ( # pylint: disable=redefined-builtin, unused-import
bytes, dict, int, list, object, range, str,
ascii, chr, hex, input, next, oct, open,
... | simomarsili/scikit-msa | skmsa/parser.py | Python | bsd-3-clause | 3,497 | [
"Biopython"
] | fb975d705341d17f60ead9ee1a4f8cfe9dc99c6b83c26b0267e688d9df15bc65 |
'''
synbiochem (c) University of Manchester 2016
synbiochem is licensed under the MIT License.
To view a copy of this license, visit <http://opensource.org/licenses/MIT/>.
@author: neilswainston
'''
# pylint: disable=invalid-name
# pylint: disable=unused-argument
import matplotlib.pyplot as plt
import numpy as np
i... | neilswainston/development-py | synbiochemdev/learning/ch2/__init__.py | Python | mit | 1,538 | [
"VisIt"
] | 1616fe91864210de31ce7109e5f7743477c3fae23705e0bf556c73b0b7fbc17c |
import os
from django.contrib.auth.management import create_permissions
from project import settings
from django.apps import apps
def post_migrate_create_organization(sender, **kwargs):
for app_config in apps.get_app_configs():
create_permissions(app_config, apps=apps, verbosity=0)
Organization = ... | pattisdr/lookit-api | accounts/signals.py | Python | mit | 81,170 | [
"VisIt"
] | f59f236dd04601a1e1a451ad7e25c5d4a16bb9e6488050761d11123d594eae12 |
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