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#!/usr/bin/env python
# @package vfnow
# \author Ed Bueler and Constantine Khroulev, University of Alaska Fairbanks, USA
# \brief A script for verification of numerical schemes in PISM.
# \details It specifies a refinement path for each of Tests ABCDEFGIJKL and runs
# pismv accordingly.
# Copyright (C) 2007--2013, 201... | talbrecht/pism_pik | test/vfnow.py | Python | gpl-3.0 | 13,390 | [
"NetCDF"
] | 25df9e293d36ef29c10d27dd553544de1ea3b2f872575f4a7b3c28b7216b8104 |
#!/usr/bin/python
# Copyright 2009 Google Inc. All rights reserved.
"""This script generates an rc file and header (setup_strings.{rc,h}) to be
included in setup.exe. The rc file includes translations for strings pulled
from generated_resource.grd and the localized .xtb files.
The header file includes IDs for each s... | amyvmiwei/chromium | chrome/installer/util/prebuild/create_string_rc.py | Python | bsd-3-clause | 7,361 | [
"xTB"
] | e58804f3b6e31fd159337d6dfc3cc6239bd5927efc7555d8ace7d738855fdd28 |
"""GC Larsen wake model applied to offshore wind farms (WindFarm object)
@moduleauthor:: Juan P. Murcia <jumu@dtu.dk>
References:
[1] Larsen GC. "A simple stationary semi-analytical wake model", 2009
"""
import numpy as np
import fusedwake.WindTurbine as wt
import fusedwake.WindFarm as wf
def Ua(r,te,zc,us,z0):
... | rethore/FUSED-Wake | fusedwake/gcl/python/gcl.py | Python | agpl-3.0 | 22,558 | [
"Gaussian"
] | 091d3474657bfe9bc6cd1c4cb025e2c89d32dae0aaafdaf635be57e19cb18fe8 |
'''
my.oledhat.testbed
Home of my_test_iface()
That subroutine is used by fonsa_bakebit_nanohat_oled_background_p3.py and testme.py when the user
wants to experiment with new (OLED) interface features.
Created on Jan 10, 2018
@author: johnrabsonjr
'''
import sys
from my.miscellany import sleep
from my.oledhat im... | HugoMMRabson/fonsa | src/my/oledhat/testbed.py | Python | gpl-3.0 | 4,377 | [
"exciting"
] | bcdcb405060bee7dd960e3371bc46035c04b7d7706de9b3d0b84e5fe95164afc |
########################################################################
# $HeadURL$
# File : TestWatchdogMac.py
# Author: Stuart Paterson
########################################################################
from DIRAC.Core.Base import Script
Script.parseCommandLine()
from DIRAC.WorkloadManagementSystem.JobWrappe... | sposs/DIRAC | WorkloadManagementSystem/JobWrapper/test/TestWatchdog.py | Python | gpl-3.0 | 4,431 | [
"DIRAC"
] | 177fee626b922c6fe97aa2f04a23a3a8f64c34a9636ccf13517c8d652d75077e |
# Copyright (c) 2013-2015 University Corporation for Atmospheric Research/Unidata.
# Distributed under the terms of the MIT License.
# SPDX-License-Identifier: MIT
"""
================
NCSS and CartoPy
================
Use Siphon to query the NetCDF Subset Service (NCSS) and plot on a map.
This example uses Siphon's ... | dopplershift/siphon | examples/ncss/NCSS_Cartopy_Example.py | Python | mit | 4,888 | [
"NetCDF"
] | 76f7d4c66a8c0fd33d99e1df42b16f36a1ccd59b0a342f0d149b2a0d446d30d6 |
import requests, resolveurl
import re
import xbmcaddon,time
from ..scraper import Scraper
from ..common import clean_title,clean_search,random_agent,send_log,error_log
dev_log = xbmcaddon.Addon('script.module.universalscrapers').getSetting("dev_log")
from universalscrapers.modules import cfscrape
class filmclub(Scrape... | repotvsupertuga/tvsupertuga.repository | script.module.universalscrapers/lib/universalscrapers/scraperplugins/unsure/filmclub.py | Python | gpl-2.0 | 4,068 | [
"ADF"
] | 3d15896a4e336fc8bce16103cd0cba98e1418a279eaba0a846f98b148f5779a5 |
# Lint as: python2, python3
# Copyright 2015 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
... | xzturn/tensorflow | tensorflow/tools/common/public_api.py | Python | apache-2.0 | 5,044 | [
"VisIt"
] | 83ce5b652672ca9d72897c7266e62298dca82a455c83fa4af2092e6ae868904b |
#!/usr/bin/env python
# Copyright 2014-2018 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | gkc1000/pyscf | pyscf/pbc/dft/test/test_uks.py | Python | apache-2.0 | 2,134 | [
"PySCF"
] | 0334fb9ec20eff246f87cd32d3fea6d506fd2a390f48d16b62685b0eae835677 |
# coding: utf-8
from __future__ import unicode_literals
import base64
import datetime
import hashlib
import json
import netrc
import os
import random
import re
import socket
import sys
import time
import math
from ..compat import (
compat_cookiejar,
compat_cookies,
compat_etree_fromstring,
compat_getp... | phihag/youtube-dl | youtube_dl/extractor/common.py | Python | unlicense | 122,941 | [
"VisIt"
] | 8da09d70c1e8eddfbd5a66932f35857500fcb3a40b5bd6b25414a21d41aba461 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
#
# --- BEGIN_HEADER ---
#
# worker - Background worker threads
# Copyright (C) 2003-2009 The MiG Project lead by Brian Vinter
#
# This file is part of MiG.
#
# MiG is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License a... | heromod/migrid | mig/shared/worker.py | Python | gpl-2.0 | 2,814 | [
"Brian"
] | f62f5c5f92e841e126d6a4749fff249a6d3f3fe0657a3986675abbf834b96232 |
geo_names={
(0, 0): u'US',
(1, 0): u'Alabama',
(1, 1): u'Autauga County, Alabama',
(1, 3): u'Baldwin County, Alabama',
(1, 5): u'Barbour County, Alabama',
(1, 7): u'Bibb County, Alabama',
(1, 9): u'Blount County, Alabama',
(1, 11): u'Bullock County, Alabama',
(1, 13): u'Butler County, Alabama',
(1, 15): u'Cal... | CivicKnowledge/geoid | geoid/censusnames.py | Python | bsd-2-clause | 132,257 | [
"COLUMBUS",
"Elk"
] | d9b582aa6bac93e88343ea8b2bace21c764998172d74e3f298a6280411d961d2 |
"""
Countries list for the countries app.
"""
# Country codes correct as of 23th June 2015
COUNTRIES_CHOICES = (
('AFG', "Afghanistan"),
('ALB', "Albania"),
('DZA', "Algeria"),
('ASM', "American Samoa"),
('AND', "Andorra"),
('AGO', "Angola"),
('AIA', "Anguilla"),
('ATA', "Antarctica"),... | TamiaLab/carnetdumaker | apps/countries/countries.py | Python | agpl-3.0 | 15,927 | [
"BWA"
] | 11cad7ba18f161edc6e9d7b684df5e16d3d95517439fa6a15760eed658a4f1f0 |
# -*- coding: utf-8 -*-
#
# MNE documentation build configuration file, created by
# sphinx-quickstart on Fri Jun 11 10:45:48 2010.
#
# This file is execfile()d with the current directory set to its containing
# dir.
#
# Note that not all possible configuration values are present in this
# autogenerated file.
#
# All c... | cjayb/mne-python | doc/conf.py | Python | bsd-3-clause | 27,783 | [
"Mayavi",
"VTK"
] | 8330a79f743bedbff43bd431b961d194ba044bb4ff440422d2f969a029698740 |
__version__ = '1.1a'
import kivy
from kivy.app import App
from kivy.core.window import Window
from kivy.uix.screenmanager import ScreenManager, Screen, SlideTransition
from kivy.properties import ObjectProperty
#from kivy.uix.boxlayout import BoxLayout
#install_twisted_rector must be called before importing the reac... | DeathPoison/roomControll | TwistedClient_KIVY/main.py | Python | mit | 4,808 | [
"TINKER"
] | c8427a613f0a713a870f80b3d020295989c2192a78ff414392391589d89c95a7 |
# -*- coding: utf-8 -*-
"""Functions to make 3D plots with M/EEG data."""
from __future__ import print_function
# Authors: Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Denis Engemann <denis.engemann@gmail.com>
# Martin Luessi <mluessi@nmr.mgh.harvard.edu>
# Eric Larson <lar... | nicproulx/mne-python | mne/viz/_3d.py | Python | bsd-3-clause | 78,615 | [
"Mayavi",
"VTK"
] | 4690d9ce8b9ce25a982c73df3f50977f1e7a6df911e781231eeb679e4880724f |
# This file has to be run in pure Python mode!
# Imports from the CO𝘕CEPT code
from commons import *
from snapshot import load
plt = get_matplotlib().pyplot
# Absolute path and name of this test
this_dir = os.path.dirname(os.path.realpath(__file__))
this_test = os.path.basename(os.path.dirname(this_dir))
# Read in... | jmd-dk/concept | test/powerspec/analyze.py | Python | gpl-3.0 | 6,692 | [
"Gaussian"
] | 703d102c4f0a17e4d9709b1ab13ff40e46f779776ae40820ea9a36e27865a568 |
import os
import os.path
import colorsys
from itertools import izip
try:
import json
except ImportError:
import simplejson as json
import whisper
import firefly.data_source
class GraphiteWSP(firefly.data_source.DataSource):
"""Stats from Graphite's Whisperdb files"""
DESC = "Graphite"
def __i... | Yelp/firefly | firefly/data_sources/graphite_wsp.py | Python | isc | 2,236 | [
"Firefly"
] | 1433b6589ce813df3c792244e6841955f6a0967c79e72b30d9492c467c264163 |
# OpenShot Video Editor is a program that creates, modifies, and edits video files.
# Copyright (C) 2009 Jonathan Thomas
#
# This file is part of OpenShot Video Editor (http://launchpad.net/openshot/).
#
# OpenShot Video Editor is free software: you can redistribute it and/or modify
# it under the terms of the GNU G... | XXLRay/libreshot | libreshot/blender/scripts/spacemovie_intro.py | Python | gpl-3.0 | 5,628 | [
"Galaxy"
] | 38eabe28b928209102ace3294379c3fd51c6e084c4f0ceecac22916af0be2224 |
from soap.common import base_dispatcher
from soap.semantics.functions import arith_eval, bool_eval
from soap.program.flow import CompositionalFlow, WhileFlow
class BaseState(base_dispatcher('visit')):
"""Base state for all program states."""
__slots__ = ()
@classmethod
def empty(cls):
return ... | admk/soap | soap/semantics/state/base.py | Python | mit | 2,662 | [
"VisIt"
] | 8e8a531639fcbb1597cb9ef0a6f518694c31c8ccb64eec2b0f5ea9525ea50e19 |
"""PiecewiseFunction for piecewise functions."""
from __future__ import print_function
import bisect
import numbers
import operator
from functools import partial
from .integration import *
from .interpolation import *
from .utils import epsunique, estimateDegreeOfPole, testPole, findinv, findinv_minf, findinv_pinf, ... | jszymon/pacal | pacal/segments.py | Python | gpl-3.0 | 90,885 | [
"DIRAC"
] | 888100a1f80f86455d2957ea54e9e8bafb69a3fd9ed9e5d54135e536066ef945 |
#!/usr/bin/env python
"""
openmoltools: Tools for Small Molecules, Antechamber, OpenMM, and More.
COPYRIGHT AND LICENSE
@author John D. Chodera <jchodera@gmail.com>
@author Kyle A. Beauchamp <kyleabeauchamp@gmail.com>
@author David L. Mobley <dmobley@mobleylab.org>
All code in this repository is released under the ... | choderalab/openmoltools | openmoltools/__init__.py | Python | mit | 906 | [
"Amber",
"Gromacs",
"OpenMM"
] | f4c3ae23c67369054ed33018819262bf15c97dcbd4d845bc6f4ec91f993637e6 |
"""Qsignature: detection of sample mixups.
https://sourceforge.net/p/adamajava/wiki/qSignature/
"""
import os
import shutil
import subprocess
import lxml
import pysam
import toolz as tz
from bcbio import bam, utils
from bcbio.distributed.transaction import file_transaction
from bcbio.log import logger
from bcbio.pro... | brainstorm/bcbio-nextgen | bcbio/qc/qsignature.py | Python | mit | 8,491 | [
"pysam"
] | e89a531ba5da409ade0376ff00c2711aa5cb98f51ff13b7a3820de02da2d93a0 |
# -*- coding: utf-8 -*-
from __future__ import unicode_literals
import datetime
from lxml import etree, objectify
from django.utils.six import StringIO
from ..models import *
from ..utils import get_content_type_id
from .data import REVERSE_OPERATOR_TABLE
from .exceptions import BlocklyXmlParserException
class Blo... | dgk/django-business-logic | business_logic/blockly/parse.py | Python | mit | 7,881 | [
"VisIt"
] | 9bf4c39d52806625113ba64ff903aeb74890354d13c6a6f4f2c1314c03b21bad |
from __future__ import absolute_import
import os
import numpy as np
from scipy.ndimage import center_of_mass
from scipy.signal import fftconvolve
#
# INTERNAL DEPENDENCIES
#
from . import image_basics
from .image_basics import load_image_to_numpy
import scanomatic.io.logger as logger
#
# CLASSES
#
class FixtureI... | Scan-o-Matic/scanomatic | scanomatic/image_analysis/image_fixture.py | Python | gpl-3.0 | 8,369 | [
"Gaussian"
] | 3ffa32eb98671b1ec6f7022c46f98834abe21fd8a5a3211c56b7a01bee33246c |
# -*- coding: utf-8 -*-
# isort:skip_file
"""
Dimensional analysis and unit systems.
This module defines dimension/unit systems and physical quantities. It is
based on a group-theoretical construction where dimensions are represented as
vectors (coefficients being the exponents), and units are defined as a dimension
t... | wxgeo/geophar | wxgeometrie/sympy/physics/units/__init__.py | Python | gpl-2.0 | 7,219 | [
"Avogadro"
] | ba59836fb931ec87f1ef6a9e96a5d11a765e09c9078bce8dd184dd2dec568912 |
from math import sin, cos, pi
from ase import Atoms
from ase.calculators.emt import EMT
from ase.constraints import FixAtoms
from ase.optimize.test import run_test
from ase.lattice.surface import fcc111, add_adsorbate
name = 'CO_Au111'
def get_atoms():
zpos = cos(134.3/2.0*pi/180.0)*1.197
xpos = sin(134.3/2.0... | grhawk/ASE | tools/ase/optimize/test/CO_Au111.py | Python | gpl-2.0 | 870 | [
"ASE"
] | 8004d0eec91665cf246dd2e4d294cbede98b53114dac43fadc42935a346871bf |
import functools
import os.path
import shutil
import signal
import splinter
import splinter.exceptions
import sys
import urlparse
import tests.appserver
from tests import *
from tests.web.conditions import WaitWhile, WaitUntil, BrowserHasURL
from nose.tools import make_decorator
def requires_login(fn):
def __requir... | happz/settlers | tests/web/__init__.py | Python | mit | 5,093 | [
"VisIt"
] | c58b6308d2d9e831d9f96aaa79654d2182adba804a57b366594701501f44e7d2 |
""" A fast implementation of the Voigt function.
"""
# p2.6+ compatibility
from __future__ import division, print_function, unicode_literals
import numpy as np
from math import sqrt, pi
sqrtpi = sqrt(pi)
# u values corresponding to H table values below
U = np.arange(0, 20, 0.01)
# Table of h1 and h3 for use in Voi... | nhmc/Barak | barak/absorb/voigt.py | Python | bsd-3-clause | 73,281 | [
"Gaussian"
] | 6f3d7c8600155005ecd2175f3914c23ea301faa3ec0e9a6daef482d30993a1ba |
# coding: utf-8
# Copyright 2017 CERN. This software is distributed under the
# terms of the GNU General Public Licence version 3 (GPL Version 3),
# copied verbatim in the file LICENCE.md.
# In applying this licence, CERN does not waive the privileges and immunities
# granted to it by virtue of its status as an In... | blond-admin/BLonD | blond/toolbox/filters_and_fitting.py | Python | gpl-3.0 | 7,393 | [
"Gaussian"
] | 84b0fbec68b93f294087fac602a92b3c5cfb72f2f3452f302658e75f542e7c0d |
#######################################################################
#######################################################################
# CoNIFER: Copy Number Inference From Exome Reads
# Developed by Niklas Krumm (C) 2012
# nkrumm@gmail.com
#
# homepage: http://conifer.sf.net
# This program is described in:
#... | nkrumm/CoNIFER | conifer.py | Python | gpl-3.0 | 27,411 | [
"pysam"
] | 0863fc30302a0b054c6dae5f2c85c0a3de070fd25e5a69ae42e69e69aa772a0f |
"""
Service handler for generating pre-signed URLs for S3 storages.
Permissions to request a URL for a given action are mapped against FC permissions
This service can serve presigned URL for any S3 storage it has the credentials for.
.. literalinclude:: ../ConfigTemplate.cfg
:start-after: ##BEGIN S3Gateway
:end-b... | ic-hep/DIRAC | src/DIRAC/DataManagementSystem/Service/S3GatewayHandler.py | Python | gpl-3.0 | 6,444 | [
"DIRAC"
] | e550a45f411110aa9d37c8854e79743be7daec6a20886d41606eb25a1d9a80ef |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
from __future__ import division, unicode_literals
import os
import random
import unittest
import json
import six
from monty.os.path import which
from pymatgen import Lattice, PeriodicSite, Element
from monty.j... | setten/pymatgen | pymatgen/transformations/tests/test_standard_transformations.py | Python | mit | 19,976 | [
"VASP",
"pymatgen"
] | 2cc7bcb14f7e154be00f49394ce6ff907adc211ac95f44076d38159e7059ac97 |
#
# Copyright Capita Translation and Interpreting 2013
#
# This file is part of Pipeline Creation Language (PCL).
#
# Pipeline Creation Language (PCL) is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either ve... | ianj-als/pcl | src/pclc/parser/conditional_expressions.py | Python | gpl-3.0 | 4,850 | [
"VisIt"
] | 00a67c5e897c06f65b92638a20ad7ab3e5988326fa0a93a15ee2d36d853ff807 |
from collections import defaultdict
from itertools import count
from operator import attrgetter
from os import path as op
import matplotlib.pyplot as plt
import pandas as pd
import numpy as np
from tqdm import tqdm
import pickle
from ..exceptions import PipelineException
try:
import cv2
except ImportError:
pr... | dimitri-yatsenko/pipeline | python/pipeline/utils/eye_tracking.py | Python | lgpl-3.0 | 45,937 | [
"Gaussian"
] | c57a329b6586363e5857819a17eb260abaa85f647a800e4df1a0206f9fceb8f4 |
# vim: ft=python fileencoding=utf-8 sts=4 sw=4 et:
# Copyright 2016-2018 Florian Bruhin (The Compiler) <mail@qutebrowser.org>
#
# This file is part of qutebrowser.
#
# qutebrowser is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free S... | toofar/qutebrowser | qutebrowser/browser/webengine/webenginetab.py | Python | gpl-3.0 | 44,050 | [
"VisIt"
] | 4c24f4045efbd0f5a31ece1fa445dadcf31599d8c3ff46b49db72e7a0a5b2573 |
#!/usr/bin/env python
""" Illustrates texturing on a glyph and also illustrates how easy it
is to change that texture when you treat it as a numpy array. You can
change the numpy array in-place and have TVTK re-render the scene.
TVTK sees a view of this array without doing any data transfers.
"""
# Authors: Prabhu R... | joferkington/scipy2015-3d_printing | texture_example.py | Python | mit | 4,375 | [
"VTK"
] | d2bded84d86f98436722cafe26cf63b5a39f147a05cdb71afc065f36306865f7 |
# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #
#
# Okinawa Institute of Science and Technology, Japan.
#
# This script runs on STEPS 2.x http://steps.sourceforge.net
#
# H Anwar, I Hepburn, H Nedelescu, W Chen and E De Schutter
# Stochastic calcium mechanisms cause dendritic calcium spike... | CNS-OIST/STEPS_Example | publication_models/API_2/Anwar_J_Neurosci_2013/HybridCaburst_stochBK.py | Python | gpl-2.0 | 19,926 | [
"Avogadro"
] | a239e0f5187076eef841c2813706e942f506110250f78eb3b8a44f38473ce4c6 |
# This code is so you can run the samples without installing the package
import sys
import os
sys.path.insert(0, os.path.join(os.path.dirname(__file__), '..'))
#
import pyglet
import cocos
from cocos.director import director
from cocos.actions import *
from cocos.layer import *
from cocos.particle_systems import *
cl... | adamwiggins/cocos2d | test/test_particle_fireworks.py | Python | bsd-3-clause | 784 | [
"Galaxy"
] | 3c929d85c6ea81faae03a4461b70a98770c66175081532a82f8762353b654de7 |
# Copyright (c) 2012-2014, GPy authors (see AUTHORS.txt).
# Licensed under the BSD 3-clause license (see LICENSE.txt)
import numpy as np
from ...util.linalg import pdinv,jitchol,DSYR,tdot,dtrtrs, dpotrs
from posterior import Posterior
from . import LatentFunctionInference
log_2_pi = np.log(2*np.pi)
class EP(LatentFunc... | TianpeiLuke/GPy | GPy/inference/latent_function_inference/expectation_propagation.py | Python | bsd-3-clause | 5,081 | [
"Gaussian"
] | 399288b15bc477732d3a39383f20e2183d16e5bd8d1b020fc5d6c7ab4bdb6663 |
# coding: utf-8
"""
Vericred API
Vericred's API allows you to search for Health Plans that a specific doctor
accepts.
## Getting Started
Visit our [Developer Portal](https://developers.vericred.com) to
create an account.
Once you have created an account, you can create one Application for
Production and an... | vericred/vericred-python | vericred_client/models/provider_network_event_notification.py | Python | apache-2.0 | 16,193 | [
"VisIt"
] | e22e3f36a151b3053bff6f448fb49effeef3bab93450103a5e595fb85245ff29 |
import networkx as nx
__all__ = ["cytoscape_data", "cytoscape_graph"]
_attrs = dict(name="name", ident="id")
def cytoscape_data(G, attrs=None):
"""Returns data in Cytoscape JSON format (cyjs).
Parameters
----------
G : NetworkX Graph
Returns
-------
data: dict
A dictionary wit... | SpaceGroupUCL/qgisSpaceSyntaxToolkit | esstoolkit/external/networkx/readwrite/json_graph/cytoscape.py | Python | gpl-3.0 | 3,068 | [
"Cytoscape"
] | 7fc4edd84ba5e95e9c3c54cf6f35931cf2ceeff052db79a9def7e8e4145b94e6 |
#
# Copyright 2016 The BigDL Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in ... | intel-analytics/BigDL | python/orca/example/tfpark/tf_optimizer/evaluate.py | Python | apache-2.0 | 3,743 | [
"ORCA"
] | 89c8ebe1a02d52d748e8b8d955b0401cbdbdff699f4ab00312c79f0a2625b63e |
# Copyright 2018-2020 The GPflow Contributors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by appli... | GPflow/GPflow | gpflow/optimizers/natgrad.py | Python | apache-2.0 | 16,686 | [
"Gaussian"
] | ec74ef19b82202625648aef41ea583b1c7f024a7d08fc05bc08d647f1f078526 |
#!/usr/bin/env python
'''
Script to read data from underway ctd files and write them to netCDF files.
Use the conventions for Trajectory feature type and write as much metadata as possible.
This script is meant to preserve the data identically as it is reported in the orignal files.
Mike McCann
MBARI 11 January 20... | duane-edgington/stoqs | stoqs/loaders/CANON/toNetCDF/uctdToNetcdf.py | Python | gpl-3.0 | 15,747 | [
"NetCDF"
] | 56c37e764c81245c3650e9c09920afacdcbb2d6acd9a18ab86f60e60de928ab1 |
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
This module defines classes for reading/manipulating/writing the main sections
of FEFF input file(feff.inp), namely HEADER, ATOMS, POTENTIAL and the program
control tags.
XANES and EXAFS input files, are available, for no... | materialsproject/pymatgen | pymatgen/io/feff/inputs.py | Python | mit | 32,599 | [
"FEFF",
"pymatgen"
] | e8de980143361256a55edc5fea40cf0f1ca450c5671f7b385b1d07ece5b908e8 |
##############################################################################
# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-64... | mfherbst/spack | var/spack/repos/builtin/packages/r-yapsa/package.py | Python | lgpl-2.1 | 2,743 | [
"Bioconductor"
] | 5632d6ece89bb070ca84b338387d49daa5dbd828f5523b412b85804d4c19e9ef |
'''
Copyright (C) 2013 Travis DeWolf
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
This program is distributed in the hope t... | sebastien-forestier/pydmps | pydmps/dmp_discrete.py | Python | gpl-3.0 | 5,924 | [
"Gaussian"
] | e870721f1ee99185afb8fd44a5af10777301bb6b371ed86aaed042ea89cfb96c |
"""
This module contains all the code necessary for the VAE.
The general use is to instantiate a VAE with the appropriate
hyper parameters, then to train it with a dataset. You can
then load the resulting weights into a VAE later.
Much of this code was taken from here: https://blog.keras.io/building-autoencoders-in-k... | MaxStrange/ArtieInfant | scratch/autoencoder/vae.py | Python | mit | 17,584 | [
"Gaussian"
] | ee96eaf81a3532cad375593fb0df840b112b1890df211e89716432e18c52f956 |
# pyshlex.py - PLY compatible lexer for pysh.
#
# Copyright 2007 Patrick Mezard
#
# This software may be used and distributed according to the terms
# of the GNU General Public License, incorporated herein by reference.
# TODO:
# - review all "char in 'abc'" snippets: the empty string can be matched
# - test line cont... | wwright2/dcim3-angstrom1 | sources/bitbake/lib/bb/pysh/pyshlex.py | Python | mit | 28,652 | [
"VisIt"
] | 37f9b7e1fc042e736ec3e76e8a7b5dd5cd2d6db381959ae5505153a1d748a88f |
"""
===========================================
===========================================
Author: Shujia Huang & Siyang Liu
Date : 2014-05-20 08:50:06
"""
import sys
import numpy as np
from sklearn import mixture
from sklearn.utils.extmath import logsumexp
# My own class
import VariantDatum as vd
import VariantRecal... | ShujiaHuang/AsmVar2 | asmvar/vqsr/VariantRecalibratorEngine.py | Python | mit | 6,457 | [
"Gaussian"
] | 5b5cb6d7bdc11d3166a9ba83d3c80f395438af91fd668e8eee3e934bd46cc801 |
# -*- coding: utf-8 -*-
"""
Handy things for interactive sessions.
"""
from __future__ import print_function, division
try:
import sip
sip.setapi('QString', 2)
sip.setapi('QVariant', 2)
except:
pass
"""matplotlib niceness:
import mpltools.style
mpltools.style.use('ggplot')
and
plt.tight_layout()
"""
... | martindurant/misc | startup.py | Python | mit | 8,893 | [
"Gaussian"
] | 0f3617734f4f0f5621f3e1371f1afb5980d74bbee5b16124cf661a2fca6f0ca8 |
# LICENSE: GPL2
# (c) 2013 Tom Schouten <tom@getbeep.com>
# (c) 2014, Kamil Wartanowicz <k.wartanowicz@gmail.com>
import logging
from util import hextools
import sim_reader
from util import types
from util import types_g
class SimCard(object):
def __init__(self, index=0, mode=sim_reader.MODE_PYSCARD, type=types.TY... | kamwar/simLAB | sim/sim_card.py | Python | gpl-2.0 | 7,524 | [
"ADF"
] | be592213734596099d63aea10082aa7beb3884b9b185f82e53bdccf1eacfe8a5 |
""" pytest for WorkflowTasks
"""
# pylint: disable=protected-access,missing-docstring,invalid-name
from mock import MagicMock
import pytest
from DIRAC import gLogger
from DIRAC.Interfaces.API.Job import Job
# sut
from DIRAC.TransformationSystem.Client.TaskManager import WorkflowTasks
gLogger.setLevel('DEBUG')
moc... | andresailer/DIRAC | TransformationSystem/Client/test/Test_Client_WorkflowTasks.py | Python | gpl-3.0 | 5,329 | [
"DIRAC"
] | 8c321512cb73a771145fd4bc37a890a0736d431d22501828293f6e16ebd7a3e2 |
# -*- coding: utf-8 -*-
#
# Instant Press. Instant sites. CMS developed in Web2py Framework
# Site: http://www.instant2press.com
#
# Copyright (c) 2010 Mulone, Pablo Martín
#
# License Code: GPL, General Public License v. 2.0
# License Content: Creative Commons Attribution 3.0
#
# Also visit: www.web2py.com
# ... | danisuke0781/instant-press | modules/filldb.py | Python | gpl-2.0 | 28,204 | [
"VisIt"
] | 605dd77d0bb966f1c58500e7832732a5c7b955cda45d40ee1fe54e2fd236dd17 |
import os
from __main__ import vtk, qt, ctk, slicer
from slicer.ScriptedLoadableModule import *
import logging
import sys
if sys.version_info[0] == 3:
basestring = str
#
# DeveloperToolsForExtensions
#
class DeveloperToolsForExtensions(ScriptedLoadableModule):
"""Uses ScriptedLoadableModule base class, availa... | fbudin69500/SlicerDeveloperToolsForExtensions | DeveloperToolsForExtensions/DeveloperToolsForExtensions.py | Python | apache-2.0 | 20,680 | [
"VTK"
] | 70bddcba72ce70900b1c927e31488a06e30f79b9f4e585e382ac1a34872d3945 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
The phasediagram package implements the analysis tools to perform phase
stability analyses, including the constructing of phase diagrams, determination
of decomposition products, etc. The package is designe... | setten/pymatgen | pymatgen/phasediagram/__init__.py | Python | mit | 610 | [
"pymatgen"
] | 996556afe162f4118b4c3e8b7872089512b1dc951b08d6e5f98077a1d885436a |
# -*- coding: utf-8 -*-
#
# Copyright (C) 2019 Chris Caron <lead2gold@gmail.com>
# All rights reserved.
#
# This code is licensed under the MIT License.
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files(the "Software"), to deal
# in th... | SickGear/SickGear | lib/apprise/plugins/NotifyNotica.py | Python | gpl-3.0 | 12,144 | [
"VisIt"
] | af06a5067045fc84e292f60aec475f9dce0326cefcffb61a210cc58317b886ea |
# Copyright (C) 2010 by Kevin Saff
# This file is part of the CA scanner.
# The CA scanner is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any la... | kcsaff/CA | src/views.py | Python | gpl-3.0 | 11,857 | [
"MCell"
] | da27e6263528ceb6dbf68e203ce51bb5cf94c4b6a48df6047071779e4ac7fcba |
#!/usr/bin/env python
"""\
reorder a revlog (the manifest by default) to save space
Specifically, this topologically sorts the revisions in the revlog so that
revisions on the same branch are adjacent as much as possible. This is a
workaround for the fact that Mercurial computes deltas relative to the
previous revisi... | iluxa-com/mercurial-crew-tonfa | contrib/shrink-revlog.py | Python | gpl-2.0 | 7,948 | [
"VisIt"
] | 1ea536f447eb93b8ea731c5ee5ff614b0dd1efa80d981d5f69e6837b64035e5e |
# Copyright 2020 Google LLC All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or ag... | googleapis/python-firestore | tests/unit/v1/test_async_transaction.py | Python | apache-2.0 | 35,994 | [
"Galaxy"
] | 60ec507b6a58f580e1d2548a72a385be9989eaac45f457bf6588ea74ad721b57 |
def highlightBlock(block, vtkwindow):
"""
Input:
block[BlockInfo]: This block will be a child of /BCs
vtkwindow[VTKWindowPlugin]: The vtk window to set the highlights on
"""
if not vtkwindow.isVisible() or not vtkwindow.isEnabled():
return
if not block.path.startswith("/BCs... | Chuban/moose | python/peacock/Input/BCHighlighter.py | Python | lgpl-2.1 | 1,030 | [
"VTK"
] | 29e676e8fc8ae834704098efc29a43608e8814e8ae022dbd59460d9b5eb42321 |
from __future__ import division, print_function, absolute_import
import numpy as np
from scipy.ndimage import map_coordinates
from dipy.viz.colormap import line_colors
# Conditional import machinery for vtk
from dipy.utils.optpkg import optional_package
# import vtk
# Allow import, but disable doctests if we don't ... | StongeEtienne/dipy | dipy/viz/utils.py | Python | bsd-3-clause | 7,548 | [
"VTK"
] | 8ac25e6bde2e63f47009788ea799098fc0c0c26cd15f47cac04877562114f516 |
"""
========================================
Special functions (:mod:`scipy.special`)
========================================
.. module:: scipy.special
Nearly all of the functions below are universal functions and follow
broadcasting and automatic array-looping rules. Exceptions are noted.
Error handling
==========... | Shaswat27/scipy | scipy/special/__init__.py | Python | bsd-3-clause | 22,403 | [
"Gaussian"
] | f20a42691cfdb5d5f15a2468113949e61b24afdd94950d40ee53ec662445f12d |
"""
Contains BACE data loading utilities.
"""
from __future__ import print_function
from __future__ import division
from __future__ import unicode_literals
import sys
import os
import deepchem
import tempfile
import deepchem as dc
def load_bace(mode="regression", transform=True, split="20-80"):
"""Load BACE-1 datas... | joegomes/deepchem | examples/bace/bace_datasets.py | Python | mit | 2,390 | [
"CRYSTAL"
] | d647e9277bbe5ccb6c2253d28f2bfcc78ee6fae29214541dec3c45c051c12881 |
from __future__ import division
import numpy as np
np.seterr(divide='ignore') # these warnings are usually harmless for this code
from matplotlib import pyplot as plt
import matplotlib
import os
matplotlib.rcParams['font.size'] = 8
import pyhsmm
from pyhsmm.util.text import progprint_xrange
print \
'''
This demo show... | bikash/pyhsmm | examples/hmm.py | Python | mit | 2,178 | [
"Gaussian"
] | 21eb246a5b24ba96c1a7848eb12894a585e078d2e5f16926dae06339eaebc6a9 |
import csv
import datetime
from django.contrib.auth.models import User
from django.db import transaction
from django.core.exceptions import ObjectDoesNotExist
from django.db.models import Sum
from django.http import HttpResponse
import glob
import logging
from numpy import *
import numpy as np
import openpyxl
import si... | manterd/myPhyloDB | functions/utils/parsers.py | Python | gpl-3.0 | 80,777 | [
"Bioconductor"
] | 402760befd474226618357b0e2f8fc99a41b03e10bec8c80bc3f9edeff2ff2e8 |
"""
This sample demonstrates a simple skill built with the Amazon Alexa Skills Kit.
The Intent Schema, Custom Slots, and Sample Utterances for this skill, as well
as testing instructions are located at http://amzn.to/1LzFrj6
For additional samples, visit the Alexa Skills Kit Getting Started guide at
http://amzn.to/1LG... | jefftapper/SchoolDays | src/AlexaSchoolDays.py | Python | apache-2.0 | 9,493 | [
"VisIt"
] | c1b23c4130aab0ba203985e57aabdaaa4087d166ec2887576d32c9d2d8840f14 |
#!/usr/bin/env python
"""
Determine number of processors and memory for the worker node
"""
__RCSID__ = "$Id$"
import multiprocessing
from DIRAC.Core.Base import Script
from DIRAC import gLogger, gConfig
from DIRAC.WorkloadManagementSystem.Utilities import JobParameters
Script.setUsageMessage('\n'.join(['Get the ... | petricm/DIRAC | WorkloadManagementSystem/scripts/dirac-wms-get-wn-parameters.py | Python | gpl-3.0 | 2,577 | [
"DIRAC"
] | d626a62698b7df51b725ece441408737e1390d35db3079bc350e1e497bc6dc9c |
#!/usr/bin/env python
import os
import re
import sys
blas_routines = [
"caxpy",
"ccopy",
"cdotc",
"cdotu",
"cgbmv",
"cgemm",
"cgemv",
"cgerc",
"cgeru",
"chbmv",
"chemm",
"chemv",
"cher",
"cher2",
"cher2k",
"cherk",
"chpmv",
"chpr",
"chpr2",
"crotg",
"cscal",
"csrot",
"css... | qsnake/abinit | util/source/check-linalg-calls.py | Python | gpl-3.0 | 34,736 | [
"ABINIT"
] | 733047622f07e400d23df859e99bd264e1d29fb020afcea135d07c9c0dd50dba |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""Example demonstrating how to SOFTify an Atoms object from ASE
(https://wiki.fysik.dtu.dk/ase/).
In this example we do the needed modifications to a subclass, but they
could equally well be applied to the original class.
"""
from __future__ import print_function
import ... | NanoSim/Porto | foreign/python/examples/softpy/atoms.py | Python | gpl-3.0 | 5,816 | [
"ASE",
"CRYSTAL"
] | 86fb90b530297864b6d4320613b25b521415bb504f8ad34f4a1a9714297e83cf |
#!/usr/bin/env python
"""
put files in the FileCatalog (and Storage Element)
When destination SE is not specified, dput will use COMDIRAC configuration option "default_se".
"""
import os
import DIRAC
from DIRAC import S_OK, S_ERROR
from COMDIRAC.Interfaces import critical
from COMDIRAC.Interfaces import DSession
f... | pigay/COMDIRAC | Interfaces/scripts/dput.py | Python | gpl-3.0 | 3,137 | [
"DIRAC"
] | 0c3250726a318dd09073a48fd3e7a547cf49f9a1ebbe880e8d2320bf5abe9975 |
# -*- coding: utf-8 -*-
"""
Created on Sun Sep 10 22:06:46 2017
Converting from GSFLOW_print_controlfile4_gcng_melt30yr.m
Creates inputs files to run GSFLOW, based on the "Sagehen" example but
modified for Chimborazo's Gavilan Machay watershed. Crystal's AGU2016
poster.
GSFLOW Input files:
- control file (gen... | UMN-Hydro/GSFLOW_pre-processor | python_scripts/GSFLOW_print_controlfile4_gcng_melt5yr_restart.py | Python | gpl-3.0 | 24,055 | [
"CRYSTAL"
] | 22d0d331ca2cba0894d9f8bf78f1e9b504dcad9a9670e49fd9f9a73195ac52eb |
"""
Contains all functions used for printing.
Uses colorama for formatting.
"""
import subprocess
import sys
import textwrap
import urllib
import json
import colorama
import requests
from socli import search, tui
DEBUG = False
# Bold and underline are not supported by colorama.
_BOLD = '\033[1m'
_UNDERLINE = '\033... | gautamkrishnar/socli | socli/printer.py | Python | bsd-3-clause | 8,741 | [
"VisIt"
] | 268be08975eb07d8b49a163931bfade562938534513e43bb65f5c97e553df56e |
from __future__ import division
import numpy as np
from filterbank import Steerable, SteerableNoSub
import cv2
from scipy import signal
import itertools
def MSE(img1, img2):
return ((img2 - img1)**2).mean()
def fspecial(win = 11, sigma = 1.5):
"""
2D gaussian mask - should give the same result as MATLAB's
fspecia... | long0612/randProbs | IQA/metric.py | Python | mit | 7,455 | [
"Gaussian"
] | 10ed1c4571282191373b64fa0d983d5091c3781f7a91cb9608ec0ed4920dda11 |
#!/usr/bin/env python
# Copyright 2010, 2014-2015 VPAC
# Copyright 2010, 2014 The University of Melbourne
#
# This file is part of Karaage.
#
# Karaage is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either v... | monash-merc/karaage | setup.py | Python | gpl-3.0 | 3,866 | [
"Brian"
] | 04761aa12388eb1fac970940cd0f4ab5274b621534466a3e04de2c2290d6b397 |
#!/usr/bin/env python
import vtk
from vtk.test import Testing
from vtk.util.misc import vtkGetDataRoot
VTK_DATA_ROOT = vtkGetDataRoot()
# Create the RenderWindow and Renderer
ren1 = vtk.vtkRenderer()
renWin = vtk.vtkRenderWindow()
renWin.AddRenderer(ren1)
renWin.SetAlphaBitPlanes(1)
iren = vtk.vtkRenderWind... | timkrentz/SunTracker | IMU/VTK-6.2.0/Rendering/Core/Testing/Python/TestWindowToImageTransparency.py | Python | mit | 1,971 | [
"VTK"
] | eb4e50ef9650273b730d430733e79ae3a8f187aa5c048e6cdc26b865a37d9a91 |
from pype.fgir import *
from pype.error import *
class Optimization(object):
'''
Optimization pass interfaces.
'''
def visit(self, obj): pass
class FlowgraphOptimization(Optimization):
'''
Called on each flowgraph in a FGIR.
May modify the flowgraph by adding or removing nodes (return a... | Mynti207/cs207project | pype/optimize.py | Python | mit | 8,237 | [
"VisIt"
] | 51be4fffb295955278b8a45eb5ed33704c71e4159db1b0990711adc84947512b |
# -*- coding: utf-8 -*-
import platform
import os
import subprocess
import multiprocessing
from multiprocessing.pool import ThreadPool
import collections
import shutil
from invoke import task
MAX_WORKER_NUM = 4
@task
def check_flatc(cxt):
path = shutil.which("flatc")
if path is None:
print("Not foun... | yichiuan/Moedict-Android | moe-converter/tasks.py | Python | apache-2.0 | 2,907 | [
"MOE"
] | 4a7490b039dfcb334d53e3d63a0091c45176afb845797af911fbdd261365c033 |
# -*- coding: utf-8 -*-
import unittest
import warnings
import mock
from brew.exceptions import DataLoaderException
from brew.exceptions import GrainException
from brew.exceptions import HopException
from brew.exceptions import YeastException
from brew.parsers import DataLoader
from brew.parsers import JSONDataLoader
... | chrisgilmerproj/brewday | tests/test_parsers.py | Python | mit | 10,095 | [
"CRYSTAL"
] | 7e253207abd85eb0f2fa65162fb97e492fb538665fca8d98a23c1966d04a21f3 |
# Copyright 2022 The Magenta Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in ... | magenta/magenta | magenta/models/latent_transfer/common_joint.py | Python | apache-2.0 | 26,953 | [
"Gaussian"
] | 7900e5e0d985a35a1d293d5354b4661d099708f7bf6f305c29776106120c3462 |
"""
Copyright 2015 Brian Quach
Licensed under MIT (https://github.com/brianquach/udacity-nano-fullstack-movie-trailer/blob/master/LICENSE) # noqa
"""
import webbrowser
class Movie():
"""Represents a movie.
Attributes:
title: A string representing the movie title.
storyline: A string represen... | brianquach/Full-Stack-Web-Developer-Nanodegree---P1 | media.py | Python | mit | 1,472 | [
"Brian"
] | ce3e2909cbcee2316e9501378f1d8c859d4a8066d0736d0b47720242aa1ec113 |
#! /usr/bin/env python
#This script renumbers all pdb files that are in PDB path
# residue_renumber_all_pdbs.py <PDB path> <GROMACS programs path>
# Example: python residue_renumber_all_pdbs.py /home/faccioli/Execute/1VII/ /home/faccioli/Programs/gmx-4.6.5/no_mpi/bin/
import sys
import os
from subprocess import Popen... | rodrigofaccioli/2pg_cartesian | scripts/checking/residue_renumber_all_pdbs.py | Python | apache-2.0 | 1,065 | [
"Gromacs"
] | cf23fd5cd727e4d25de92a0f3ee85f292bb8275ef018747b096d647257b2506d |
"""ropemacs, an emacs mode for using rope refactoring library"""
import sys
import ropemode.decorators
import ropemode.environment
import ropemode.interface
from Pymacs import lisp
from rope.base import utils
# This global dictionary is used by Pymacs to determine whether or not
# a function in `(interactive)` in th... | atilaneves/ropemacs_py3k | ropemacs/__init__.py | Python | gpl-2.0 | 22,874 | [
"VisIt"
] | a946a11a4c3f2f02999a2a4f284ab1d26920411227af41919bf841dfa7be5ba6 |
#!/usr/bin/env python
"""
Demos of time encoding and decoding algorithms that use
coupled ON-OFF IAF neurons.
"""
# Copyright (c) 2009-2015, Lev Givon
# All rights reserved.
# Distributed under the terms of the BSD license:
# http://www.opensource.org/licenses/bsd-license
import numpy as np
# Set matplotlib backend... | bionet/ted.python | demos/iaf_coupled_demo.py | Python | bsd-3-clause | 2,562 | [
"NEURON"
] | e17927cdf860921fb4c8cacab1e56e8945a9157e7b17ec1dda4330a39386567f |
# -*- Mode: python; tab-width: 4; indent-tabs-mode:nil; coding:utf-8 -*-
# vim: tabstop=4 expandtab shiftwidth=4 softtabstop=4
#
# MDAnalysis --- https://www.mdanalysis.org
# Copyright (c) 2006-2017 The MDAnalysis Development Team and contributors
# (see the file AUTHORS for the full list of names)
#
# Released under t... | MDAnalysis/mdanalysis | package/MDAnalysis/auxiliary/core.py | Python | gpl-2.0 | 3,622 | [
"MDAnalysis"
] | 01026105c4c4871dffccb3f3caf6d9c05e52b33e520f8e4070d3468de6b9f09f |
# Copyright 2018 The Chromium Authors. All rights reserved.
# Use of this source code is governed by a BSD-style license that can be
# found in the LICENSE file.
import json
from page_sets import press_story
from telemetry import story
DESCRIPTIONS = {
'ai-astar':
'This benchmark uses the [A* search algo... | scheib/chromium | tools/perf/page_sets/kraken_pages.py | Python | bsd-3-clause | 4,046 | [
"Brian",
"Gaussian"
] | 0dd01bc55985b35386fd6fd660489d467410e90d27a545ddec0d708578b28a0d |
# coding=utf-8
# Copyright 2022 The Tensor2Tensor Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable... | tensorflow/tensor2tensor | tensor2tensor/models/research/attention_lm_moe.py | Python | apache-2.0 | 27,374 | [
"MOE"
] | 85d9480bdbb3eec447b6aef331f87f4bc505080ae8061868a95f513ea9344293 |
# ***** BEGIN LICENSE BLOCK *****
# Version: MPL 1.1/GPL 2.0/LGPL 2.1
#
# The contents of this file are subject to the Mozilla Public License Version
# 1.1 (the "License"); you may not use this file except in compliance with
# the License. You may obtain a copy of the License at
# http://www.mozilla.org/MPL/
#
# Softwa... | centrumholdings/buildbot | buildbot/buildrequest.py | Python | gpl-2.0 | 5,048 | [
"Brian"
] | a4ae6d0212c7c0eb38a6a4a2a57a99bdf8bb7c3dfba64da27656e2be04a8e993 |
#
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not us... | lhfei/spark-in-action | spark-3.x/src/main/python/mllib/kernel_density_estimation_example.py | Python | apache-2.0 | 1,486 | [
"Gaussian"
] | 37c2eeeb1eddf9b987869e9338b0a05b12a9794c6139bdaf64a0a32335d5501c |
"""
Copyright (C) 2015, Jaguar Land Rover
This program is licensed under the terms and conditions of the
Mozilla Public License, version 2.0. The full text of the
Mozilla Public License is at https://www.mozilla.org/MPL/2.0/
Rudolf Streif (rstreif@jaguarlandrover.com)
"""
from __future__ import absolute_import
im... | dvthiriez/rvi_backend | web/can_fw/tasks.py | Python | mpl-2.0 | 7,202 | [
"Jaguar"
] | 02fe444de954d33feaa24edbfa0c5f11b87c902b961efb1d7bc9c12129d68778 |
"""
Matomo template tags and filters.
"""
import re
from collections import namedtuple
from itertools import chain
from django.conf import settings
from django.template import Library, Node, TemplateSyntaxError
from analytical.utils import (
disable_html,
get_identity,
get_required_setting,
is_intern... | jcassee/django-analytical | analytical/templatetags/matomo.py | Python | mit | 4,010 | [
"VisIt"
] | 827dd16bca5a90887c25da57573a18cf1e601cd0941bbe1b016ba60afd4039d6 |
#
# A simple file for converting any XML file via an XSL stylesheet
# Has also features for compiling teh generated file, if it's a
# NEURON mod file
#
# Author: Padraig Gleeson
#
# This file has been developed as part of the neuroConstruct project
# This work has been funded by the Medical Research Counci... | BhallaLab/benchmarks | neuro_morpho/ConvertCML.py | Python | gpl-2.0 | 5,094 | [
"NEURON"
] | e814d4596e29044e4bd65ee32c089baed090e3848d8b7a0d1f630669d8623e83 |
########################################################################
# $Id$
########################################################################
""" Definitions of a standard set of pilot commands
Each commands is represented by a class inheriting CommandBase class.
The command class constructor takes... | Sbalbp/DIRAC | WorkloadManagementSystem/PilotAgent/pilotCommands.py | Python | gpl-3.0 | 29,366 | [
"DIRAC"
] | 35268a5e79584bb6ca288570c420fa46ce3d47818193476478cf009242f2fd82 |
#import unittest
#
#from DIRAC.Core.Base import Script
#Script.parseCommandLine()
#
#from DIRAC.ResourceStatusSystem.Utilities.mock import Mock
#import DIRAC.ResourceStatusSystem.test.fake_RequestHandler
#import DIRAC.ResourceStatusSystem.test.fake_rsDB
#import DIRAC.ResourceStatusSystem.test.fake_rmDB
#import DIRAC.Re... | Sbalbp/DIRAC | ResourceStatusSystem/Service/test/Test_ResourceManagementHandler.py | Python | gpl-3.0 | 3,545 | [
"DIRAC"
] | c5711e0014c7bb70c34985192bc28cd32d64d947543ff163c6f81aedb193afcc |
#! /usr/bin/env python3
#
# Copyright (c) 2017, Forschungszentrum Juelich GmbH
# Author: Yann Leprince <y.leprince@fz-juelich.de>
#
# This software is made available under the MIT licence, see LICENCE.txt.
import sys
import nibabel
import numpy as np
import neuroglancer_scripts.mesh
def mesh_file_to_vtk(input_file... | HumanBrainProject/neuroglancer-scripts | experimental/mesh_to_vtk.py | Python | mit | 3,841 | [
"VTK"
] | 4721776d8ac5281c3ad337ebb4d8a2b3527ce73a56f0292330f05e418a4e9806 |
"""Sub-classes for vtk.vtkRectilinearGrid and vtk.vtkImageData."""
import pathlib
import logging
import numpy as np
import pyvista
from pyvista import _vtk
from pyvista.utilities import abstract_class
from .dataset import DataSet
from .filters import _get_output, UniformGridFilters
log = logging.getLogger(__name__)... | akaszynski/vtkInterface | pyvista/core/grid.py | Python | mit | 14,658 | [
"VTK"
] | c51b6f58e6b1f66633e4738cb4ff495df2795573978713e2fbe597d00fe788af |
'''Side note to self- ALIGNGUI WILL BE MUCH HARDER THAN BLASTGUI.
EACH ALIGNMENT PROGRAM REQUIRES DIFFERENT INPUTS.
NEEDS A LOT OF IF STATEMENTS AND A VAGUE SUPROCESS(CLINE) STATEMENT.
OPTIONS MENU BAR POP_UP NEEDS TO GIVE A FAIR DEAL OF FREEDOM.
COMMON INPUT TYPES INCLUDE:
ALPHABET
SEQUENCE LENGTH LIMIT
MA... | fxb22/BioGUI | plugins/Tools/ALIGNgui.py | Python | gpl-2.0 | 15,919 | [
"BLAST"
] | 76c3b8a777a31a128b0de93cc10f912d4934ff5bff90ade5466922bc4ad76a56 |
"""
chatbot.py
Ask Cleverbot something via CloudBot! This one is way shorter!
Created By:
- Foxlet <http://furcode.tk/>
License:
GNU General Public License (Version 3)
"""
from cloudbot import hook
import requests
import urllib.parse
import hashlib
import collections
import html
SESSION = collections.Order... | CrushAndRun/Cloudbot-Tarball | plugins/chatbot.py | Python | gpl-3.0 | 1,716 | [
"Galaxy"
] | 9d12ddba8e95e9a65de8d1071aeecff9e2e3cff998c9f47e3f9a641349987aac |
# GromacsWrapper: collections.py
# Copyright (c) 2009 Oliver Beckstein <orbeckst@gmail.com>
# Released under GPL3+
"""
:mod:`analysis.collections` -- Handling of groups of simulation instances
=========================================================================
This module contains classes and functions that com... | pslacerda/GromacsWrapper | gromacs/analysis/collections.py | Python | gpl-3.0 | 4,164 | [
"Gromacs"
] | 46762b7fcce47ffcf531ae03cb38f63f93d3d2ad043b33eb66c15a9b88215f08 |
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