text stringlengths 12 1.05M | repo_name stringlengths 5 86 | path stringlengths 4 191 | language stringclasses 1
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values | size int32 12 1.05M | keyword listlengths 1 23 | text_hash stringlengths 64 64 |
|---|---|---|---|---|---|---|---|
"""
This script adds a foreign key to the form_values table in the galaxy_user table
"""
from sqlalchemy import *
from sqlalchemy.orm import *
from sqlalchemy.exceptions import *
from migrate import *
from migrate.changeset import *
import datetime
now = datetime.datetime.utcnow
import sys, logging
# Need our custom ty... | volpino/Yeps-EURAC | lib/galaxy/model/migrate/versions/0025_user_info.py | Python | mit | 2,491 | [
"Galaxy"
] | df904446a577d7ab26efbefeaab3105259d1fd5dd8e65eff69f9fc2d10d3eb6d |
# Copyright (c) 2012-2014, GPy authors (see AUTHORS.txt).
# Licensed under the BSD 3-clause license (see LICENSE.txt)
import numpy as np
import sys
from .. import kern
from .model import Model
from .parameterization import ObsAr
from .mapping import Mapping
from .. import likelihoods
from ..inference.latent_function_i... | ptonner/GPy | GPy/core/gp.py | Python | bsd-3-clause | 37,031 | [
"Gaussian"
] | 81f92719322678a74b0cfe8c9062fa0e57bf9cd1311d9c0f5420800c86716c47 |
from .. import Availability, Class, Constant, Define, Method, Parameter, Type
gx_class = Class('VVU',
doc="""
These methods are not a class. Utility methods perform
various operations on :class:`VV` objects, including pruning,
splining, clipping and f... | GeosoftInc/gxapi | spec/desk/VVU.py | Python | bsd-2-clause | 101,398 | [
"Gaussian"
] | b67af20113536fe95f2b2ee353d8a733c72ae053b4891c4336c1b146985ffae7 |
#!/usr/bin/python
#
# Created on Aug 25, 2016
# @author: Gaurav Rastogi (grastogi@avinetworks.com)
# Eric Anderson (eanderson@avinetworks.com)
# module_check: supported
#
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General... | fredericlepied/ansible | lib/ansible/modules/network/avi/avi_alertconfig.py | Python | gpl-3.0 | 11,715 | [
"VisIt"
] | ed376b7e77d986dd88cba6e20f2e14c1f9c86668b144ac4dfc976d5e9ed5857f |
# PYTHON 3
#
# Author: Kate Willett
# Created: 1 February 2013
# Last update: 15 January 2020
# Location: /data/local/hadkw/HADCRUH2/UPDATE2014/PROGS/HADISDH_BUILD/
# GitHub: https://github.com/Kate-Willett/HadISDH_Build
# -----------------------
# CODE PURPOSE AND OUTPUT
# -----------------------
# Reads in a g... | Kate-Willett/HadISDH_Build | MakeGridTrends.py | Python | cc0-1.0 | 24,675 | [
"NetCDF"
] | ae9d6fcab6171580b9271eb3ae02e3b5ba59e7ade5288e320547c3bf334dc751 |
"""
=============================================
Density Estimation for a mixture of Gaussians
=============================================
Plot the density estimation of a mixture of two Gaussians. Data is
generated from two Gaussians with different centers and covariance
matrices.
"""
import matplotlib.pyplot as ... | DailyActie/Surrogate-Model | 01-codes/scikit-learn-master/examples/mixture/plot_gmm_pdf.py | Python | mit | 1,528 | [
"Gaussian"
] | a40d25bd459d5ac174ed3c8e4949471fe5ef3d5c6e3b85a160daff57bff0b596 |
###########################################################################
# #
# physical_validation, #
# a python package to test the physical validity of MD results #
# ... | shirtsgroup/physical-validation | physical_validation/data/lammps_parser.py | Python | lgpl-2.1 | 20,326 | [
"LAMMPS"
] | 56994830abd150380ac1517e1f3167b736af04383152f6b7fe25d6054df43072 |
# DistTarBuilder: tool to generate tar files using SCons
# Copyright (C) 2005, 2006 Matthew A. Nicholson
# Copyright (C) 2006-2010 John Pye
#
# This file is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License version 2.1 as published by the Free Software... | wheeler-microfluidics/dmf-control-board-firmware | site_scons/site_tools/disttar/disttar.py | Python | bsd-3-clause | 5,183 | [
"VisIt"
] | aa88a215491208b0aa4357646225d8f4c519dfdd372497c334b2e34997ebbd92 |
# This file is part of cclib (http://cclib.github.io), a library for parsing
# and interpreting the results of computational chemistry packages.
#
# Copyright (C) 2006-2014, the cclib development team
#
# The library is free software, distributed under the terms of
# the GNU Lesser General Public version 2.1 or l... | Clyde-fare/cclib | src/cclib/method/cspa.py | Python | lgpl-2.1 | 3,974 | [
"cclib"
] | 96fbcfe9dcc9d27b21677bff69fc1f964568a6aad3fbb32bb1c4c12a989f0bd5 |
#!/usr/bin/env python
########################################################################
# $HeadURL$
# File : dirac-executor
# Author : Adria Casajus
########################################################################
__RCSID__ = "$Id$"
""" This is a script to launch DIRAC executors
"""
import sys
impor... | Sbalbp/DIRAC | Core/scripts/dirac-executor.py | Python | gpl-3.0 | 1,643 | [
"DIRAC"
] | 89b34fbd08042807ddd834c7fd70fb2918396ba9334ad955ce2eeae1000dff0d |
import numpy as np
import mdtraj as md
import scipy.spatial.distance
from msmbuilder3.base import BaseModeller, TransformerMixin, EstimatorMixin
class KCenters(BaseModeller, EstimatorMixin):
"""
K-Centers clustering of multivariate vector datasets
Parameters
----------
n_clusters : int
Th... | rmcgibbo/msmbuilder3 | msmbuilder3/cluster/kcenters.py | Python | gpl-3.0 | 4,225 | [
"MDTraj"
] | 88cfbe1c5eb40ce1f499fd69ace1e759479515e51f8c52a8c03dd35fd64545d7 |
# -*- coding: utf-8 -*-
"""
ORCA Open Remote Control Application
Copyright (C) 2013-2020 Carsten Thielepape
Please contact me by : http://www.orca-remote.org/
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as publish... | thica/ORCA-Remote | src/ORCA/vars/Globals.py | Python | gpl-3.0 | 1,417 | [
"ORCA"
] | 362f5cc62552f25693c1ba165a1e52c253a36a2de15909d49e5cb2d370f1c0ea |
"""
Acceptance tests for Studio's Setting pages
"""
from base_studio_test import StudioCourseTest
from bok_choy.promise import EmptyPromise
from ...fixtures.course import XBlockFixtureDesc
from ..helpers import create_user_partition_json
from ...pages.studio.overview import CourseOutlinePage
from ...pages.studio.setti... | unicri/edx-platform | common/test/acceptance/tests/studio/test_studio_settings.py | Python | agpl-3.0 | 16,655 | [
"VisIt"
] | 4722222bff2631a5c1262e4c25f834379831127929a0242607c6efe7e0abc496 |
#!/usr/bin/env python
"""
Compliance Checker
"""
from __future__ import unicode_literals
from functools import wraps
import pprint
from netCDF4 import Dataset
from owslib.swe.observation.sos100 import SensorObservationService_1_0_0
from owslib.swe.sensor.sml import SensorML
from owslib.namespaces import Namespaces
f... | DanielJMaher/compliance-checker | compliance_checker/base.py | Python | apache-2.0 | 10,691 | [
"NetCDF"
] | 9795cb5116a5f394d438a3273782b28e8890b96b2153579a269bfd17811543e5 |
class Bond(object):
"""Docstring for Bond"""
bond_type = ""
bond_equib_len = ""
bond_force_const = ""
bond_master = ""
bond_slave = ""
opls_bond_num = 0
print_type = 0
#constructor
def __init__(self, bond_type, bond_master, bond_slave):
self.bond_type = bond_type
self.bond_mas... | sipjca/cmlparser_py | bond.py | Python | apache-2.0 | 4,563 | [
"LAMMPS"
] | ae1ae50e49cd1b6da392fc0a7ca11d8fa160ba360a5958a1d58b100a4362efc1 |
# ----------------------------------------------------------------------------
# pyglet
# Copyright (c) 2006-2008 Alex Holkner
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions
# are met:
#
# * Redistribu... | regular/pyglet-avbin-optimizations | pyglet/graphics/__init__.py | Python | bsd-3-clause | 25,424 | [
"VisIt"
] | 0ea61314f8a44d6a584dc81e826b8efc72b66779c384dc38a13d9eacc2089c7b |
#!/usr/bin/env python
"""If given core seqs and a
set of genomes, extract the core
and build an alignment ready
for phylogenetics"""
from __future__ import division
from __future__ import print_function
import optparse
import subprocess
import os
import sys
try:
from Bio import SeqIO
from Bio.Blast import NCB... | jasonsahl/LS-BSR | tools/extract_core_genome.py | Python | gpl-3.0 | 11,556 | [
"BLAST",
"Biopython"
] | 57a9952b1d6fc701f6a7cfdbadaa1049212da064c040d7805fca98bd40b53d38 |
from django.contrib.auth.tokens import PasswordResetTokenGenerator
from django.conf import settings
from django.core.mail import send_mail
from django.core.urlresolvers import reverse
from django.utils.http import urlsafe_base64_encode
def send_activation_email(request, user):
b64uid = urlsafe_base64_encode(str(us... | editorsnotes/editorsnotes | editorsnotes/auth/utils.py | Python | agpl-3.0 | 1,133 | [
"VisIt"
] | 0d7a94231e20aba91c3050097ede133ce762a9e02b806415c2a50facd6ceac06 |
#!/usr/bin/env python3
#pylint: disable=missing-docstring
#* This file is part of the MOOSE framework
#* https://www.mooseframework.org
#*
#* All rights reserved, see COPYRIGHT for full restrictions
#* https://github.com/idaholab/moose/blob/master/COPYRIGHT
#*
#* Licensed under LGPL 2.1, please see LICENSE for details
... | nuclear-wizard/moose | python/chigger/tests/simple/simple_camera.py | Python | lgpl-2.1 | 958 | [
"MOOSE",
"VTK"
] | 6c9669a9aa92e171c8de71fd98f692ed5e6e487ec13214ec1a7dba5578d519f4 |
"""
The B{0install download} command-line interface.
"""
# Copyright (C) 2011, Thomas Leonard
# See the README file for details, or visit http://0install.net.
import sys
from zeroinstall import _
from zeroinstall.cmd import UsageError, select
from zeroinstall.injector import model
syntax = "URI"
def add_options(pa... | pombredanne/zero-install | zeroinstall/cmd/download.py | Python | lgpl-2.1 | 856 | [
"VisIt"
] | 7487f52b1b29203e0047ddb61c66f859a966a49a65f5ca4c59944cc78aa8282c |
########################################################################
# $HeadURL$
########################################################################
""" DIRAC FileCatalog plugin class to manage file metadata. This contains only
non-indexed metadata for the moment.
"""
__RCSID__ = "$Id$"
from types impor... | arrabito/DIRAC | DataManagementSystem/DB/FileCatalogComponents/FileMetadata.py | Python | gpl-3.0 | 21,554 | [
"DIRAC"
] | ad71793fd8736c71c016637ff2fccbe4c3a0ffc9d2a8629da8688a3687acb7f2 |
"""
Plot and save key steps in pulses.py for visualizing the alorithm.
"""
import glob
import numpy as np
from scipy import stats
from matplotlib import gridspec, ticker
import matplotlib.pyplot as plt
try:
from matplotlib.colors import colorConverter as cc
except ImportError:
import matplotlib.col... | bendalab/thunderfish | thunderfish/pulseplots.py | Python | gpl-3.0 | 38,088 | [
"Gaussian"
] | 86e6c83326e207bf59f939ebc1b3b7c6263584da79920339354b1864964c23e2 |
#!/usr/bin/python3
#
#File : weather_data.py
#Author : Marcus Zurhorst
#Email : marcuszurhorst@gmail.com
#License : MIT License
#Copyright : (c) 2017 Marcus Zurhorst
#
#Description : This module provides functions to fetch weather data from
# OpenWeatherM... | mzurhorst/wassersteuerung | weather_data.py | Python | mit | 11,196 | [
"VisIt"
] | 463d164d90025768872fae9f282329e547d8c53918cd3537e650a539334c5974 |
""" :mod: DMSRequestOperationsBase
====================
Just a collector of common functions
"""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
__RCSID__ = "$Id $"
from DIRAC import S_OK, S_ERROR
from DIRAC.RequestManagementSystem.Client.Operati... | ic-hep/DIRAC | src/DIRAC/DataManagementSystem/Agent/RequestOperations/DMSRequestOperationsBase.py | Python | gpl-3.0 | 4,321 | [
"DIRAC"
] | 98748353900578d76df556fb5be6acaabeffef22ae7ba97b42b810f100cf0eaa |
tests = [
("python", "UnitTestStorageUtils.py", {}),
("python", "UnitTestDbConnect.py", {}),
("python", "UnitTestDbInfo.py", {}),
("python", "UnitTestDbUtils.py", {}),
("python", "UnitTestDbResultSet.py", {}),
]
longTests = []
if __name__ == '__main__':
import sys
from rdkit import TestRunner
failed, ... | ptosco/rdkit | rdkit/Dbase/test_list.py | Python | bsd-3-clause | 395 | [
"RDKit"
] | 219ee29632ca1c5833d22847ef2cb7388f650c64f7ffd08920b3e161afb1f679 |
import commands
import shutil
import os
import sys
import time
class configure:
"""A class that collects the data for the configuration"""
compiler_dic = {"Mac" : "$(MPICH__DIR)/build/bin/mpicxx", #"../../../mpich2-1.2.1p1_clang33/bin/mpic++",
"Linux" : " mpic++",
... | staar/empty_project | build/tem/python_files/configure.py | Python | gpl-2.0 | 14,694 | [
"Jaguar"
] | 6ea942b3868597ca9ddd493c9bd59770dde64a37bce988aa3ccea50cc24dd3fc |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
import os
from setuptools import setup
# Version number
version = '0.0.1'
def read(fname):
return open(os.path.join(os.path.dirname(__file__), fname)).read()
setup(name = 'GPyNotebook',
version = version,
author = 'Max Zwiessele',
author_email = "i... | mzwiessele/GPyNotebook | setup.py | Python | bsd-2-clause | 1,536 | [
"Gaussian"
] | 1097c5379c855828936880ff362efaf00fac945f4fdbe0215cdcc138149186f5 |
## \file
## \ingroup tutorial_roofit
## \notebook -nodraw
##
## \brief Organization and simultaneous fits: illustration use of ROOT.RooCustomizer and
## ROOT.RooSimWSTool interface in factory workspace tool in a complex standalone B physics example
##
## \macro_code
##
## \date February 2018
## \authors Clemens Lange, ... | karies/root | tutorials/roofit/rf513_wsfactory_tools.py | Python | lgpl-2.1 | 3,122 | [
"Gaussian"
] | cc631ccb503252555ad58549c1f3080c44171c866e6281501950b319c990907b |
# -*- coding: utf-8 -*-
#
# Configuration file for the Sphinx documentation builder.
#
# This file does only contain a selection of the most common options. For a
# full list see the documentation:
# http://www.sphinx-doc.org/en/stable/config
# -- Path setup ------------------------------------------------------------... | choderalab/FAHMunge | docs/conf.py | Python | lgpl-2.1 | 5,079 | [
"MDTraj"
] | 34ea4c59dfd38c5401fe28faf460c4dc873e177da97b19d460b922d202ed4cc9 |
#!/usr/bin/env python
###############################################################################
#
# fundec.py <tree> <database_file> <%id cutoff>
# I should probably include some regular expression recognition to make the
# counts of each annotation more robust. I imagine that as is this
# code will only cluster ... | geronimp/fundec | bin/tree_clust.py | Python | gpl-3.0 | 15,715 | [
"scikit-bio"
] | 1a9523cc5578810a6bbbccf0972b95baeecc707116bf8d8bc665475c37f98a70 |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2018 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute it and/or modify
#... | amjames/psi4 | psi4/driver/qmmm.py | Python | lgpl-3.0 | 5,512 | [
"Psi4"
] | 7d6f13be2fca290384fe464effe188d14cca446cc110b4986284aaab500ba5a8 |
# Copyright (c) 2009-2021 The Regents of the University of Michigan
# This file is part of the HOOMD-blue project, released under the BSD 3-Clause
# License.
"""Test Image list generation for small box / large move size simulations."""
import hoomd
import pytest
import numpy
@pytest.fixture(scope="function")
def on... | joaander/hoomd-blue | hoomd/hpmc/pytest/test_small_box_2d.py | Python | bsd-3-clause | 4,251 | [
"HOOMD-blue"
] | 2a45146e5945a781e923f0e8a0b50b2f7ef208fae00acd0a793f22b51d053cf6 |
from glob import glob
import os
from paramiko import SSHClient, AutoAddPolicy
from metamds.io import cmd_line, rsync_from
EXTENSIONS = {'trajectories': {'.xtc', '.trr', '.dcd', '.lammpstrj'},
'topologies': {'.gro', '.pdb'}}
PBS_HEADER = """#!/bin/sh -l
#PBS -j oe
#PBS -l nodes=1:ppn=16
#PBS -l walltim... | iModels/metamds | metamds/task.py | Python | mit | 7,156 | [
"Gromacs"
] | 798180a1f0ea0ef7e38d1b493e3cddb38eda8bac5e945896a5ad1391678c8b54 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
from __future__ import unicode_literals
import logging
import traceback
from collections import OrderedDict
import requests
from buildings.models import BuildingFloorSpace
from django.conf import settings
from django.db import connection
from django.http import HttpRespon... | indrz/indrz | indrz/routing/views.py | Python | gpl-3.0 | 62,671 | [
"VisIt"
] | d1c5ab4e7db37a1a8f23bfaa294be7dd9ec233f0c677904f29d186fadef2f9be |
#
# Copyright (C) 2013-2018 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later... | hmenke/espresso | testsuite/python/interactions_bonded.py | Python | gpl-3.0 | 6,402 | [
"ESPResSo"
] | 8bd2895d1f535b6f11f46e388322a40c654118ed62ce8038314384b0310cf55b |
# Copyright 2016 Brian Innes
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, ... | brianinnes/pycupi | python/vPiP/renderers/conCircleArcRenderer.py | Python | apache-2.0 | 5,643 | [
"Brian"
] | 82723000e2be5cb0f29e06fbe14bba469f4953b7b2c3c52ddb7be28a8981fc75 |
#!/usr/bin/env python
''' Create rst documentaiton of the examples directory.
This uses screenshots in the screenshots_dir
(currently doc/sources/images/examples) along with source code and files
in the examples/ directory to create rst files in the generation_dir
(doc/sources/examples) gallery.rst, index.rst, and gen... | youprofit/kivy | doc/gallery.py | Python | mit | 11,166 | [
"exciting"
] | a72ce866fd80dfb07711465de2f918917684c3c65ea445fc123ec390bc79b6bd |
from mss import mss
from PIL import ImageFilter, ImageDraw, ImageFont, Image
from argparse import ArgumentParser
def main(title, subtitle, outfile, radius):
font = ImageFont.truetype("/usr/share/fonts/TTF/DejaVuSansCondensed-Bold.ttf", 72)
font2 = ImageFont.truetype("/usr/share/fonts/TTF/DejaVuSansCondensed-Bo... | TheGhostlyCake/i3-Blurrer | main.py | Python | gpl-3.0 | 1,493 | [
"Gaussian"
] | ec9a3eb07e838e6b62a39dc80055e4ffbbd3784318e907827bcc354a722b4b21 |
# ERPNext - web based ERP (http://erpnext.com)
# Copyright (C) 2012 Web Notes Technologies Pvt Ltd
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at you... | gangadharkadam/sterp | erpnext/home/__init__.py | Python | agpl-3.0 | 3,598 | [
"VisIt"
] | 741e7287347bc9062e14150361b1bf3d8120c91d9be1f0f9badef31558854834 |
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
import json
import os
import tempfile
import unittest
import warnings
import numpy as np
from pymatgen.core.structure import Structure
from pymatgen.electronic_structure.core import Orbital, Spin
from pymatgen.io.lobster imp... | materialsproject/pymatgen | pymatgen/io/lobster/tests/test_lobster.py | Python | mit | 126,637 | [
"Gaussian",
"VASP",
"pymatgen"
] | cd7a7d9a2adc09b6eff3f94ac1b1fffc875085f95fa105e0cbf2224cd3108614 |
import numpy as np
from numpy.testing import assert_array_almost_equal
from sklearn.neighbors.kd_tree import (KDTree, NeighborsHeap,
simultaneous_sort, kernel_norm,
nodeheap_sort, DTYPE, ITYPE)
from sklearn.neighbors.dist_metrics import Dista... | davidgbe/scikit-learn | sklearn/neighbors/tests/test_kd_tree.py | Python | bsd-3-clause | 7,852 | [
"Gaussian"
] | 65cc194f32d0c946a3e1e462292a417a4d316a1887d4f9b04b300e329431af5a |
import numpy as np
import matplotlib.pyplot as plt
import matplotlib.ticker as mticker
import matplotlib.patheffects as mpatheffects
from mpl_toolkits.axes_grid1 import make_axes_locatable
import netCDF4
import time
import datetime
import pyutils.dates as pud
import pycpt.modify
import pycpt.load
pycpt.load.register_c... | j08lue/poppy | poppy/animators.py | Python | gpl-2.0 | 11,088 | [
"NetCDF"
] | 4130176cbf1eca64e5a29eba3ce82c277326018afb6b29b4c28d811ef9cb0387 |
##
# Copyright 2012-2015 Ghent University
#
# This file is part of EasyBuild,
# originally created by the HPC team of Ghent University (http://ugent.be/hpc/en),
# with support of Ghent University (http://ugent.be/hpc),
# the Flemish Supercomputer Centre (VSC) (https://vscentrum.be/nl/en),
# the Hercules foundation (htt... | ULHPC/modules | easybuild/easybuild-framework/test/framework/modules.py | Python | mit | 17,674 | [
"NetCDF"
] | d8df54c2fb6490d3c831544a7448f2db6aaa471da4f4505796817999d74f6de1 |
# coding: utf-8
from __future__ import unicode_literals
import re
import time
import xml.etree.ElementTree as etree
from .common import InfoExtractor
from ..compat import compat_urlparse
from ..utils import (
unescapeHTML,
urlencode_postdata,
unified_timestamp,
ExtractorError,
)
MSO_INFO = {
'DT... | gnowxilef/youtube-dl | youtube_dl/extractor/adobepass.py | Python | unlicense | 39,231 | [
"COLUMBUS",
"Elk"
] | 39b6b55419636aca232136d7e02400559a44b12a8bc9b00cdccf78bac075b9f6 |
#------------------------------------------------------------------------------
# Copyright (c) 2005, Enthought, Inc.
# All rights reserved.
#
# This software is provided without warranty under the terms of the BSD
# license included in enthought/LICENSE.txt and may be redistributed only
# under the conditions describe... | dmsurti/mayavi | tvtk/pyface/ui/wx/scene.py | Python | bsd-3-clause | 28,321 | [
"VTK"
] | 3675848e1ec4caab7437ffd01da821c1c0768facd599dc0a4d5d9cd83288734b |
#!/usr/bin/env python3
import os
import argparse
import sys
from time import sleep
import platform
import subprocess
mypath = os.environ["PATH"]
os.environ["PATH"] = "/home/wl45/python/bin:/home/wl45/opt:" + mypath
my_env = os.environ.copy()
parser = argparse.ArgumentParser(
description="This is a python3 script ... | luwei0917/awsemmd_script | continue_run.py | Python | mit | 1,538 | [
"LAMMPS"
] | 50507f3862a21904313b5d4d6b31a2addc9e205bae5d21d48d8f808e77ae9d6e |
# -*- encoding:ascii -*-
from mako import runtime, filters, cache
UNDEFINED = runtime.UNDEFINED
__M_dict_builtin = dict
__M_locals_builtin = locals
_magic_number = 6
_modified_time = 1417089926.309341
_template_filename='templates/webapps/galaxy/dataset/tabular_chunked.mako'
_template_uri='/dataset/tabular_chunked.mako... | mikel-egana-aranguren/SADI-Galaxy-Docker | galaxy-dist/database/compiled_templates/dataset/tabular_chunked.mako.py | Python | gpl-3.0 | 4,935 | [
"Galaxy"
] | 0665d77917186b9e5fc6c43c090bebbf94b6d697a49084137de756db0ab7047a |
# Copyright Iris contributors
#
# This file is part of Iris and is released under the LGPL license.
# See COPYING and COPYING.LESSER in the root of the repository for full
# licensing details.
"""
Unit tests for the engine.activate() call within the
`iris.fileformats.netcdf._load_cube` function.
Here, *specifically* t... | SciTools/iris | lib/iris/tests/unit/fileformats/nc_load_rules/actions/test__grid_mappings.py | Python | lgpl-3.0 | 37,796 | [
"NetCDF"
] | 8a2bc15767ddccedaae6a18b64e0c0c97f40d10b3e01050238488b925c27e9ad |
"""
NOTE: this is only used for testing the cython / c implementation.
"""
# Third-party
import astropy.units as u
import numpy as np
from twobody.wrap import cy_rv_from_elements
from astroML.utils import log_multivariate_gaussian
# from scipy.stats import multivariate_normal
# Project
from ...samples import JokerSam... | adrn/thejoker | thejoker/src/tests/py_likelihood.py | Python | mit | 8,432 | [
"Gaussian"
] | df035efc0c6b1387153243d412950bfad33032110e320c2879d87d17f8a619b7 |
from __future__ import (absolute_import, division, #
print_function, unicode_literals)
exec(open("ground.py").read())
"""
hamiltonian.py
--------------
Define Green's function and Hamiltonian for image registration, providing gradients and Hessians.
Classes:
GaussGreen: exp(-r^2/ell^2)... | tonyshardlow/reg_sde | hamiltonian.py | Python | mit | 24,276 | [
"Gaussian"
] | 3a35fed165324671e9872d1f80a0b4c206899c5c54bccb4d3f9685475c936128 |
#!/usr/bin/python
# TODO - python path - assuming condo here
## HEALTH WARNING - BETA CODE IN DEVELOPMENT ##
'''
This standalone application will build a mesh from a nifti classification file.
To keep the procedure as similar as possible to the way mrMesh used to do this,
we will keep this as a standalon applicatio... | andregouws/mrMeshPy | matlabRoutines/pyMeshBuild.py | Python | mit | 9,152 | [
"VTK"
] | b57bcdf09ac0936ecdd96b5976263e3f6f57df48f5da76b7b15b5a1c8ce1d798 |
"""Forest of trees-based ensemble methods
Those methods include random forests and extremely randomized trees.
The module structure is the following:
- The ``BaseForest`` base class implements a common ``fit`` method for all
the estimators in the module. The ``fit`` method of the base ``Forest``
class calls the ... | JT5D/scikit-learn | sklearn/ensemble/forest.py | Python | bsd-3-clause | 50,932 | [
"Brian"
] | 79efc2b7f30cd7cf1f04b5b92e76550931b87d607457585f1e27202706b7cb6b |
import pytest
import re
from capybara.exceptions import ElementNotFound
from capybara.tests.app import AppError
class TestClickLink:
@pytest.fixture(autouse=True)
def setup_session(self, session):
session.visit("/with_html")
@pytest.mark.requires("server")
def test_raises_any_errors_caught_i... | elliterate/capybara.py | capybara/tests/session/test_click_link.py | Python | mit | 5,251 | [
"VisIt"
] | 552a7ac544ea185eb24a0f03d148a41f1d685646dbf05e10120a1a35e8eb5d89 |
#!/usr/bin/env python
import sys
for i in range(0, len(sys.argv)):
if sys.argv[i] == '-A' and i < len(sys.argv)-1:
sys.path = sys.path + [sys.argv[i+1]]
import vtk
from vtk.util.misc import vtkRegressionTestImage, vtkGetDataRoot
# create planes
# Create the RenderWindow, Renderer
#
ren = vtk.vtkRenderer... | sgh/vtk | Graphics/Testing/Python/streamSurface.py | Python | bsd-3-clause | 2,273 | [
"VTK"
] | 24e87789a61e701d6a80206db212dc2ab9947d65866a5110a4fe5e8427847bf8 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
#
# --- BEGIN_HEADER ---
#
# editfile - [insert a few words of module description on this line]
# Copyright (C) 2003-2009 The MiG Project lead by Brian Vinter
#
# This file is part of MiG.
#
# MiG is free software: you can redistribute it and/or modify
# it under the terms of ... | heromod/migrid | mig/cgi-bin/editfile.py | Python | gpl-2.0 | 1,104 | [
"Brian"
] | 3c2dc03e35777e8e50278482b669dde09344b97636c5ad707b34ba95dbc32fd8 |
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
"""blast.py
Module that interacts with BLAST+ for diagnostic primer prediction.
The module provides functions that generate BLASTN command lines,
tuned for screening primer sequences. This module does NOT run the
commands - that is handled by one of the schedulers (multi... | widdowquinn/find_differential_primers | diagnostic_primers/blast.py | Python | mit | 7,969 | [
"BLAST",
"Biopython"
] | 1c10c6efbd71e54f93e73af37e1ee60faac6fbaafc5cd21dae399c72bb3d9855 |
"""
==========================================
Statistical functions (:mod:`scipy.stats`)
==========================================
.. module:: scipy.stats
This module contains a large number of probability distributions as
well as a growing library of statistical functions.
Each univariate distribution is an insta... | larsmans/scipy | scipy/stats/__init__.py | Python | bsd-3-clause | 8,976 | [
"Gaussian"
] | 3a0c65b95d6e764649d29bbe3a3e798441c19b2ad6c9a5993072765d9b0b8525 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
#
# Copyright 2014 Google Inc. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICEN... | googleapis/google-api-python-client | samples/translate/main.py | Python | apache-2.0 | 1,337 | [
"VisIt"
] | 9342cfcd0b60a0fbe2794e12833ffb71685a0d076816728d62242fca0561838d |
# Author: Travis Oliphant
# 1999 -- 2002
import operator
import math
import timeit
from scipy.spatial import cKDTree
from . import sigtools, dlti
from ._upfirdn import upfirdn, _output_len, _upfirdn_modes
from scipy import linalg, fft as sp_fft
from scipy.fft._helper import _init_nd_shape_and_axes
from scipy._lib._uti... | nmayorov/scipy | scipy/signal/signaltools.py | Python | bsd-3-clause | 151,207 | [
"Gaussian"
] | c5550193edf8cad81f3ecc0222c96cb6c783312ce48fc45cdb9a584e365f5d90 |
'''
Author: Alexander Ballisat
PLEASE READ THROUGH THIS SECTION AS IT EXPLAINS WHAT IS REQURIED TO RUN THIS
SCRIPT. The 'path' variable in Step 0 must be set, otherwise everything
should run if you have it set up correctly.
All units are SI for consistency.
This is an example script to show how a 3D Pogo model can... | ab9621/PogoLibrary | example3DPogoJob.py | Python | gpl-3.0 | 10,791 | [
"Gaussian"
] | 1f719007a514d29c6027b7c2f91f5e6b0bd8776703ea634c51055415a020377f |
# -*- coding: utf-8 -*-
"""
End-to-end tests for the gating feature.
"""
from textwrap import dedent
from common.test.acceptance.tests.helpers import UniqueCourseTest
from common.test.acceptance.pages.studio.auto_auth import AutoAuthPage
from common.test.acceptance.pages.studio.overview import CourseOutlinePage
from c... | caesar2164/edx-platform | common/test/acceptance/tests/lms/test_lms_gating.py | Python | agpl-3.0 | 8,667 | [
"VisIt"
] | c34c1af8075cd1cdce80d476122a4ccad9cfd571039d6fdc3ebdc81398b9eb65 |
#! /usr/bin/env python
########################################################################
# $HeadURL$
# File : dirac-admin-set-site-protocols
# Author : Stuart Paterson
########################################################################
"""
Defined protocols for each SE for a given site.
"""
__RCSID__ ... | avedaee/DIRAC | Interfaces/scripts/dirac-admin-set-site-protocols.py | Python | gpl-3.0 | 1,350 | [
"DIRAC"
] | d960d42842197d6a90a0a1f1e1ed53dc692b71d36b45d333b5dd56ab79cb3815 |
# -*- coding: utf-8 -*-
# Generated by Django 1.10.2 on 2016-10-08 14:24
import django.db.models.deletion
from django.db import migrations, models
class Migration(migrations.Migration):
dependencies = [
('stein', '0007_auto_20160615_2017'),
]
operations = [
migrations.CreateModel(
... | GeoMatDigital/django-geomat | geomat/stein/migrations/0008_crystalsystem.py | Python | bsd-3-clause | 1,428 | [
"CRYSTAL"
] | bdc992ffedc423265d3ee2514d9f1db55e8333840e847fc3a6d797ff082f15ce |
# -*- coding: utf-8 -*-
# Copyright (C) 2017 by Pedro Mendes, Virginia Tech Intellectual
# Properties, Inc., University of Heidelberg, and University of
# of Connecticut School of Medicine.
# All rights reserved.
# Copyright (C) 2010 - 2016 by Pedro Mendes, Virginia Tech Intellectual
# Properties, Inc., Universit... | jonasfoe/COPASI | copasi/bindings/python/unittests/Test_CModel.py | Python | artistic-2.0 | 14,040 | [
"COPASI"
] | abf5234b63edf3957c5c8df9305de81be03928a58b1aeb475fb5d51d7b3fb860 |
from __future__ import absolute_import
from .Visitor import VisitorTransform
from .Nodes import StatListNode
class ExtractPxdCode(VisitorTransform):
"""
Finds nodes in a pxd file that should generate code, and
returns them in a StatListNode.
The result is a tuple (StatListNode, ModuleScope), i.e.
... | GbalsaC/bitnamiP | venv/lib/python2.7/site-packages/Cython/Compiler/CodeGeneration.py | Python | agpl-3.0 | 1,108 | [
"VisIt"
] | 8177139f3283b2434e7b2573ab044e2c4c55dc1bbd34ee134e149a029211e2e6 |
import sys
import os
#import os.path
#import random
from string import *
import numpy as np
import scipy as sc
import scipy.interpolate as scit
import matplotlib
import pylab as pl
from matplotlib import rc
import vtk
try:
sys.path.append('/manning/home/xavier/Python/WRL/PySrc')
import PyReadData as PRD
print '... | xabart/Gerris-WRL-Flume | PostProcess.py | Python | gpl-3.0 | 589 | [
"VTK"
] | c1bde2f69b47e9e4ce6cfcce84f1c1afc279b4e6f20d41e32861d50f9496f764 |
#!/usr/bin/env python
#
# Copyright 2016 The BigDL Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicab... | intel-analytics/BigDL | python/friesian/src/setup.py | Python | apache-2.0 | 3,927 | [
"ORCA"
] | 4f7c0ca476bc3eae3163f5969074605a0d5c61d3d1da77fb6eb5a49a0b9fb377 |
"""
Container page in Studio
"""
from bok_choy.page_object import PageObject
from bok_choy.promise import Promise, EmptyPromise
from . import BASE_URL
from selenium.webdriver.common.action_chains import ActionChains
from utils import click_css, wait_for_notification, confirm_prompt
class ContainerPage(PageObject):... | bdero/edx-platform | common/test/acceptance/pages/studio/container.py | Python | agpl-3.0 | 13,533 | [
"VisIt"
] | df76fe6d30c85124b322dddbc75b65623cbeeee50c2f49c4db8c11b14dc1e29c |
# Copyright 2018 Google Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in wri... | google/tangent | tangent/desugar.py | Python | apache-2.0 | 2,988 | [
"VisIt"
] | 7fda43588af14e7b3834135c4291df9b7a403a64ee21dc0b4fa5047dd8bdcea7 |
''' Preprocess a set of micrographs for screening
This script (`ara-screenmics`) prepares micrograph image files for screening.
It performs the following preprocessing on the micrograph:
- High pass filter with cutoff = sigma / window_size (Default sigma = 1, if sigma = 0, then high pass filtering is disabled)
... | ezralanglois/arachnid | arachnid/util/screenmics.py | Python | gpl-2.0 | 9,399 | [
"Gaussian"
] | 9425e9bb14b017055be82c3a33cc26d4f45b1b2e2a28e60ee786f2deddc82659 |
# Copyright 2014-2015 Novartis Institutes for Biomedical Research
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
# http://www.apache.org/licenses/LICENSE-2.0
# Unless required by applic... | Novartis/railroadtracks | src/model/quantify.py | Python | apache-2.0 | 18,433 | [
"HTSeq"
] | b9e572c99cc7462e3d021e3fa9c802b9efd944fc3cafb49ffa7e1eb2ccba67c6 |
from __future__ import unicode_literals, division, absolute_import
import logging
import re
from datetime import datetime, timedelta
from dateutil.parser import parse as dateutil_parse
from sqlalchemy import Table, Column, Integer, String, Unicode, Boolean, Date, DateTime, Time, or_, func
from sqlalchemy.orm import re... | tsnoam/Flexget | flexget/plugins/api_trakt.py | Python | mit | 35,928 | [
"VisIt"
] | a2dab4881761a2a97a2d183d244676d4467da9c8f4d0559e1437031bc2631691 |
# coding: utf-8
# Copyright 2017 CERN. This software is distributed under the
# terms of the GNU General Public Licence version 3 (GPL Version 3),
# copied verbatim in the file LICENCE.md.
# In applying this licence, CERN does not waive the privileges and immunities
# granted to it by virtue of its status as an Intergo... | dquartul/BLonD | blond/beam/beam.py | Python | gpl-3.0 | 18,616 | [
"Gaussian"
] | efb6dd335316e0fef684bad7b278e443520c695a92712ed01023823ddb223dc0 |
# Copyright 2014-2018 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by appl... | gkc1000/pyscf | pyscf/lo/__init__.py | Python | apache-2.0 | 983 | [
"PySCF"
] | 210c91900585556e100c1345247ad6f0a62831d37531bbf415f98ea1da0e0738 |
'''
Created on Jan 18, 2013
@author: brian
'''
import openid
from openid.fetchers import HTTPFetcher, HTTPResponse
from urlparse import parse_qs
from django.conf import settings
from django.test import TestCase, LiveServerTestCase
# from django.contrib.auth.models import User
from django.core.urlresolvers import reve... | elimence/edx-platform | common/djangoapps/external_auth/tests/test_openid_provider.py | Python | agpl-3.0 | 11,386 | [
"Brian"
] | 9b5e345c04963dcd41dccae93275b0e07dba990ddba098b5f036cc6d768e703c |
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not u... | laurentgo/arrow | python/pyarrow/parquet.py | Python | apache-2.0 | 85,082 | [
"VisIt"
] | 19486f6c743c9b4f345ab30de8c463a9733ba53a3487cb31627f6c410e761fa6 |
#!/usr/bin/env python
import math
from implementation import *
import collections
class SimpleGraph:
def __init__(self):
self.edges = {}
def neighbors(self, id):
return self.edges[id]
class FrontierQueue:
def __init__(self, start=None):
self.elements = []
self.came_from = ... | akulakov/sicp | code/pathfinding/greedy.py | Python | gpl-2.0 | 2,812 | [
"VisIt"
] | 7aef60cf21adc404cfc906582a8b0bb5767ee2c3fc926e800f79e3177795db37 |
import numpy as np
from astropy.table import Table
from astropy.io import fits
import matplotlib.pyplot as plt
import matplotlib
import pickle
from TheCannon_2 import dataset,apogee
from TheCannon_2 import model
import numpy as np
import matplotlib.pyplot as plt
from matplotlib.colors import Normalize
class Midpoi... | peraktong/Cannon-Experiment | 0307_plot_all_new_ivar_bigger_0.py | Python | mit | 52,091 | [
"VisIt"
] | d43917e39497a68d68827d75bc44565ed6708f06a00a4750ac93f9cf1917d5e7 |
""" Contains the base class for flippers."""
# flipper.py
# Mission Pinball Framework
# Written by Brian Madden & Gabe Knuth
# Released under the MIT License. (See license info at the end of this file.)
# Documentation and more info at http://missionpinball.com/mpf
import logging
from mpf.system.devices import Device... | jabdoa2/mpf | mpf/devices/flipper.py | Python | mit | 15,299 | [
"Brian"
] | 2c254717a45ac5fc45e4ea69af8c8f712c658eac187a939c8165d8e0717a0136 |
#
# File : building.py
# This file is part of RT-Thread RTOS
# COPYRIGHT (C) 2006 - 2015, RT-Thread Development Team
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of... | weety/rt-thread | tools/building.py | Python | apache-2.0 | 35,640 | [
"CDK"
] | b5b4660f01a54cd9f77fc0e5b7606cd60a07c6c25ee7289ec6bc7b84e0efb84c |
#!/usr/bin/env python
import vtk
from vtk.test import Testing
from vtk.util.misc import vtkGetDataRoot
VTK_DATA_ROOT = vtkGetDataRoot()
# this demonstrates appending data to generate an implicit model
# contrast this with appendImplicitModel.tcl which set the bounds
# explicitly. this scrip should produce the ... | hlzz/dotfiles | graphics/VTK-7.0.0/Filters/Hybrid/Testing/Python/appendImplicitModelNoBounds.py | Python | bsd-3-clause | 2,584 | [
"VTK"
] | ef27025819a021635fbb7f9c88b5199278bfe402f19a9ec4775610aa04bac60d |
#!/usr/bin/env python
"""
dirac-rss-set-token
Script that helps setting the token of the elements in RSS. It can acquire or
release the token. If the releaseToken switch is used, no matter what was the
previous token, it will be set to rs_svc ( RSS owns it ). If not set, the token
will be set to w... | sposs/DIRAC | ResourceStatusSystem/scripts/dirac-rss-set-token.py | Python | gpl-3.0 | 7,082 | [
"DIRAC"
] | dd649e7d21bebb2ed4accae25f209ecb42350b17af86373a807ad4bbaeb08fdc |
# pbrange.py TEST PROGRAM for Pyboard MQTT link
# Intended for checking behaviour at the limit of WiFi range and to demonstrate
# the technique of intercepting status messages.
# Author: Peter Hinch.
# Copyright Peter Hinch 2017 Released under the MIT license.
# From PC issue (for example)
# mosquitto_pub -h 192.168.... | peterhinch/micropython-mqtt | pb_link/pbrange.py | Python | mit | 2,680 | [
"Amber"
] | 085b8ed8b4d7598f28c50e1eada8b040ed2724d7bba4b3b313f894bfb10c0ed8 |
import random
from itertools import chain
from .genes import NeuronGene, ConnectionGene, GeneticEncoding
from .specs import NumericParamSpec, NominalParamSpec
from .utils import zip_with_probabilities, weighted_random
class all_types_in_spec: pass
class Mutator:
def __init__(self,
net_spec,
in... | egdman/neat-lite | neat/operators.py | Python | mit | 12,806 | [
"NEURON"
] | 207fdf8a6e5d08dee10e82eb3ed4c2352672223a793748df8deda76871aca348 |
# Copyright 2022 Pants project contributors (see CONTRIBUTORS.md).
# Licensed under the Apache License, Version 2.0 (see LICENSE).
# -*- coding: utf-8 -*-
# NB: This must be compatible with Python 2.7 and 3.5+.
# NB: If you're needing to debug this, an easy way is to just invoke it on a file.
# E.g. `MIN_DOTS=1 STRI... | pantsbuild/pants | src/python/pants/backend/python/dependency_inference/scripts/import_parser.py | Python | apache-2.0 | 7,285 | [
"VisIt"
] | 959a7de448a8d9cfe1e8772b630be49c98323f2128ad5479b4000025c4c4d8df |
# Copyright 2005-2008 by Frank Kauff & Cymon J. Cox. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
#
# Bug reports welcome: fkauff@biologie.uni-kl.de or on Biopython's bugzilla.
... | updownlife/multipleK | dependencies/biopython-1.65/build/lib.linux-x86_64-2.7/Bio/Nexus/Nexus.py | Python | gpl-2.0 | 75,559 | [
"Biopython"
] | 192628ade38d8fbe90fe76c5bd8103035ca9903905a43649d943e303623dc98a |
"""
# LiveUtils, a collection of simple utility functions for controlling Ableton Live
# Copyright (C) 2007 Rob King (rob@e-mu.org)
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation;... | avroshk/VRDAW | VRDAW_working/LiveUtils.py | Python | gpl-3.0 | 7,775 | [
"VisIt"
] | 33622babde5b3f030a4623ca250363ec35b3a780ef2b52675183112ae1ae124c |
#
# Copyright (c) 2016 nexB Inc. and others. All rights reserved.
# http://nexb.com and https://github.com/nexB/scancode-toolkit/
# The ScanCode software is licensed under the Apache License version 2.0.
# Data generated with ScanCode require an acknowledgment.
# ScanCode is a trademark of nexB Inc.
#
# You may not use... | yasharmaster/scancode-toolkit | src/packagedcode/__init__.py | Python | apache-2.0 | 2,414 | [
"VisIt"
] | 60a539fe9f69c75d568095a45d5cf0c4fdb263a89ce194da3362eae8ea4d2ff7 |
from __future__ import unicode_literals
'''
@author
ama@esss.com.br
fabioz@esss.com.br
'''
# Custom cache for optimization purposes.
__bases_cache = {}
__hierarchy_cache = {}
#===================================================================================================
# AllBasesNames
#=====... | Kaniabi/ben10 | source/python/ben10/foundation/klass.py | Python | lgpl-2.1 | 5,644 | [
"VTK"
] | 442760b0cb9dbe858bc91ef86722dc9d461ffdc78a5398626c643ffacc1fc761 |
# Copyright (c) Charl P. Botha, TU Delft
# All rights reserved.
# See COPYRIGHT for details.
from typeModules.transformStackClass import transformStackClass
import cPickle
import fixitk as itk
import md5
from module_base import ModuleBase
from module_mixins import FilenameViewModuleMixin
import module_utils
import wx
... | chrisidefix/devide | modules/insight/transformStackRDR.py | Python | bsd-3-clause | 3,909 | [
"VTK"
] | 42dfd56c9f02c0d83996e1fdfd635fee0edb8e1610c222d3dc8c98cdb9e0279e |
"""
Turbulence
==========
Turbulence in the atmosphere affects wave propagation.
This module contains implementations of models that can be used to create random turbulence fields.
References are made to the book 'Computational Atmospheric Acoustics' by 'Erik M. Salomons', published in 2001.
================
Abs... | FRidh/turbulence | turbulence/turbulence.py | Python | bsd-2-clause | 32,642 | [
"Gaussian"
] | d69a1e9f362bee7eb4282da1268ce53bffc206fd6d9a9529d452de725e8f659d |
# This file is part of the myhdl library, a Python package for using
# Python as a Hardware Description Language.
#
# Copyright (C) 2003-2015 Jan Decaluwe
#
# The myhdl library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public License as
# published by t... | hgomersall/myhdl | myhdl/conversion/_toVHDL.py | Python | lgpl-2.1 | 81,164 | [
"VisIt"
] | ab53dff3a600fbe077cc0736e84a08d0dc92f31a416e2a3f99b828d603246fc6 |
#!/usr/bin/env python
"""
convert output of gamess/GAU$$IAN to ezfio
Usage:
qp_convert_output_to_ezfio.py <file.out> [--ezfio=<folder.ezfio>]
Option:
file.out is the file to check (like gamess.out)
folder.ezfio is the name you whant for the ezfio
(by default is file.out.ezfio)
"""
import sys
im... | eginer/qp_old | quantum_package-master/scripts/ezfio_interface/qp_convert_output_to_ezfio.py | Python | gpl-2.0 | 7,122 | [
"GAMESS"
] | e720ece14e7dddb39579f8441fe428f68c1431a9cdc9c739e86fb1dd99665e63 |
import os,sys
import numpy as np
import pandas as pd
from tqdm import tqdm
from rdkit import Chem
from utils import (ohe_label,
PAD_ID,
remove_salts)
max_char_len = 100
min_char_len = 20
data_dir = 'data/compounds'
out_file = 'data/features_fp2048.npz'
sdf_list = [os.path.join(data_dir,f) for f in os.... | kdmarshall/FingerprintDecoder | scripts/featurize_fp.py | Python | mit | 1,385 | [
"RDKit"
] | 01536eea8f2a7a248b41b468a787ea442cdd7d709e934ab68352d233abb73739 |
import sys
import os
import numpy
import platform
from PyQt5.QtWidgets import QApplication
from orangewidget import gui
from orangewidget.settings import Setting
from oasys.widgets import gui as oasysgui, congruence
from orangecontrib.xoppy.util.xoppy_util import locations, XoppyPhysics
from orangecontrib.xoppy.util.... | srio/Orange-XOPPY | orangecontrib/xoppy/widgets/optics/xcrystal.py | Python | bsd-2-clause | 25,209 | [
"CRYSTAL"
] | 652974f3d4675a9fbdcaf183de311f489b53a011f0adf632ae5b36df5651de52 |
#!/usr/bin/env python
from setuptools import setup, find_packages
readme = open('README.rst').read()
setup(name='RPLCD',
version='0.9.0',
description='A Raspberry Pi LCD library for the widely used Hitachi HD44780 controller.',
long_description=readme,
author='Danilo Bargen',
author_ema... | GoranLundberg/RPLCD | setup.py | Python | mit | 1,343 | [
"CRYSTAL"
] | 8b6b0b32a8bc7558999ea186aa3436a227c74d12418ba7d2f8c502a1efb4ee9b |
r"""
The transient advection-diffusion equation with a given divergence-free
advection velocity.
Find :math:`u` such that:
.. math::
\int_{\Omega} s \pdiff{u}{t}
+ \int_{\Omega} s \nabla \cdot \left(\ul{v} u \right)
+ \int_{\Omega} D \nabla s \cdot \nabla u
= 0
\;, \quad \forall s \;.
View the re... | BubuLK/sfepy | examples/diffusion/time_advection_diffusion.py | Python | bsd-3-clause | 1,746 | [
"VTK"
] | 15d390a507635c4d9408d33b03002722d96f0acbdbe20fe9a4c62c29c713afd2 |
import datetime
from django.db import models, transaction
from django.urls import reverse
from django_countries.fields import CountryField
from workshops.consts import FEE_DETAILS_URL
from workshops.mixins import (
AssignmentMixin,
COCAgreementMixin,
CreatedUpdatedMixin,
DataPrivacyAgreementMixin,
... | pbanaszkiewicz/amy | amy/extrequests/models.py | Python | mit | 18,981 | [
"VisIt"
] | cce356c31c9da4982c0d02a15d0886afb0b662498bd92f2d5636a3a8c943b76e |
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
from __future__ import unicode_literals
__doc__ = """Code by Benjamin S. Murphy
bscott.murphy@gmail.com
Dependencies:
numpy
scipy (scipy.optimize.minimize())
Functions:
_adjust_for_anisotropy(X, y... | basaks/PyKrige | pykrige/core.py | Python | bsd-3-clause | 20,431 | [
"Gaussian"
] | e21abb6eb12f2d32946527ecb2685f3f1c5e66bb7b5faf40f0ea5dace119d6fe |
"""
Instructor Dashboard Views
"""
import datetime
import logging
import uuid
from functools import reduce
import pytz
import six
from django.conf import settings
from django.contrib.auth.decorators import login_required
from django.http import Http404, HttpResponseServerError
from django.urls import reverse
from dj... | msegado/edx-platform | lms/djangoapps/instructor/views/instructor_dashboard.py | Python | agpl-3.0 | 33,670 | [
"VisIt"
] | 7be137ba756b392bbecab0d65c5c54e4f25f5d98b62689ffe0764de4b94d4571 |
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