text stringlengths 12 1.05M | repo_name stringlengths 5 86 | path stringlengths 4 191 | language stringclasses 1
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"""A notebook manager that uses the local file system for storage.
Authors:
* Brian Granger
"""
#-----------------------------------------------------------------------------
# Copyright (C) 2008-2011 The IPython Development Team
#
# Distributed under the terms of the BSD License. The full license is in
# the f... | cloud9ers/gurumate | environment/lib/python2.7/site-packages/IPython/frontend/html/notebook/notebookmanager.py | Python | lgpl-3.0 | 11,283 | [
"Brian"
] | f790999031e49264db5b409d8ee06f2b363f84cec256cdece979bfc4db5e4bb7 |
from lib.loaddata import *
from lib.tiles import *
def work(step, data_set):
bottom, top, left, right = data_set.min_max_lat_long()
tiles = build_tiles(data_set, step, top, bottom, left, right)
tiles = normalise_tiles(tiles)
draw_data = {'squigle_line': [], 'circles': []}
for x in range(len(tiles))... | mattyhall/North-South-Divide | lib/work.py | Python | bsd-3-clause | 3,001 | [
"Amber"
] | 03ae0fecba9edcca5747c126cbc2fa8e1edcdd3239b59648934a0f9e84970023 |
# pylint: disable=missing-docstring
import datetime
import os
import pytz
from django.conf import settings
from mock import patch
from pytz import UTC
from splinter.exceptions import ElementDoesNotExist
from selenium.common.exceptions import NoAlertPresentException
from nose.tools import assert_true, assert_equal, asse... | jazkarta/edx-platform-for-isc | lms/djangoapps/courseware/features/lti.py | Python | agpl-3.0 | 13,981 | [
"VisIt"
] | 535d0e478135255132a0f582ce834137f605b6aad527c8f95eb25c197756b64d |
# -*- coding: utf-8 -*-
# Copyright (c) 2015-2018, Exa Analytics Development Team
# Distributed under the terms of the Apache License 2.0
"""
Gaussian Output Editor
#########################
Editor classes for various types of Gaussian output files
"""
from __future__ import absolute_import
from __future__ import print... | avmarchenko/exatomic | exatomic/gaussian/output.py | Python | apache-2.0 | 30,472 | [
"Gaussian"
] | 4848dc51b8404c61df6f78c7cb4545297eee881aa2c8016a7e4e149e0a5b9bd0 |
#!/usr/bin/env python
"""
General tools for dealing with ATAC-Seq data using Python.
@author: Alicia Schep, Greenleaf Lab, Stanford University
"""
import subprocess
import numpy as np
from scipy import signal
import pysam
import warnings
from copy import copy
#Run shell command
def shell_command(cmd):
"""Conduct... | GreenleafLab/NucleoATAC | pyatac/utils.py | Python | mit | 4,323 | [
"Gaussian",
"pysam"
] | f23df28c032cd83857e6b0121bc63f7d056400be8cc65ae6dae5e101cf14bfc1 |
'''
Created on Jul 3, 2015
@author: oleg
'''
from let_me_app import models
from django.db.models import F
from django.utils import timezone
from functools import wraps
from django.conf import settings
def oject_statuses(request):
return {
'APPLICATION_STATUSES': models.ApplicationStatuses,
'PROPO... | oleg-chubin/let_me_play | let_me_app/context_processors.py | Python | apache-2.0 | 1,646 | [
"VisIt"
] | 7786611e6345fe30549ab315b19d098cfc9455d0a497864a7ce4a2716969c4f1 |
# Unofficial companion web-app for Elite: Dangerous (property of Frontier
# Developments). Collector-Drone lets you manage blueprints and material
# inventory for crafting engineer upgrades.
# Copyright (C) 2016 Frederik Schumacher
#
# This program is free software: you can redistribute it and/or modify
# it under the... | fre-sch/collector-drone | collectordrone/criteria.py | Python | gpl-3.0 | 5,130 | [
"CRYSTAL"
] | 4876c073c08dea7b128aa1fa0dbb5edc4ee05a0d7beb693ee124d4a4f6802ba6 |
from .base import SOLAR, EARTH, WATER, FIRE, AIR, LUNAR, Spell
from .. import effects
from .. import targetarea
from .. import enchantments
from .. import animobs
from .. import stats
from .. import invocations
from .. import context
# CIRCLE ONE
FREEZE_FOE = Spell( "Freeze Foe",
"A single target will be frozen i... | jwvhewitt/dmeternal | old_game/spells/waterspells.py | Python | gpl-2.0 | 5,234 | [
"BLAST"
] | c1b670a7d17da2e7580507a6612ff227f68509a521e2b585df01eff4ff1b8dc3 |
"""
Render the examples to images and adds them to the documentation.
"""
# Standard library imports
import glob
import os
import shutil
import token, tokenize
import textwrap
import itertools
# Enthought imports
from mayavi import mlab
# A global counter, for subsitutions.
global_counter = itertools.count()
EXAMPL... | dmsurti/mayavi | docs/source/render_examples.py | Python | bsd-3-clause | 17,492 | [
"Mayavi"
] | eac2ff06e8f13fc14e572126f8b1a987d74ce8862f0a37de0c688db5b768295f |
import Updater
print "default output"
upd = Updater.New("Ultrabenosaurus/EasyXdcc", "1.2")
print "SIMPLE:\n\t%s" % upd.Simple()
print "NEW-FULL:\n\t" + upd.Main()
print "NEW-SHORT:\n\t" + upd.Main("short")
upd = Updater.New("Ultrabenosaurus/EasyXdcc", "9.9")
print "NO-NEW:\n\t" + upd.Main()
print "\ncustom output"
u... | Ultrabenosaurus/pupdater | test.py | Python | bsd-3-clause | 793 | [
"VisIt"
] | 7f2cebe0063f6780fb9cef7de99b283e62fdddd26320efdd634a1c9a587e7e5e |
#!/usr/bin/env python2.7
# -*- coding: utf-8 -*-
"""
@package RefMasker
@brief Main file of the program
@copyright [GNU General Public License v2](http://www.gnu.org/licenses/gpl-2.0.html)
@author Adrien Leger - 2015
* <adrien.leger@gmail.com>
* <adrien.leger@inserm.fr>
* <adrien.leger@univ-nantes.fr>
* [... | a-slide/RefMasker | src/RefMasker.py | Python | gpl-2.0 | 10,838 | [
"BLAST"
] | ba5fb4b5d53b3c41c2345951e3cd732bbd2023976710497746bb6dc51263591a |
import os
from setuptools import setup
readme_path = os.path.join(os.path.abspath(os.path.dirname(__file__)),
'README.md')
with open(readme_path, 'r', encoding='utf-8') as fh:
long_description = fh.read()
def main():
install_list = ['pysb>=1.3.0,<=1.9.1', 'objectpath',
... | sorgerlab/belpy | setup.py | Python | mit | 6,061 | [
"Pybel"
] | 2ccd84019e47d680bb5288235b598a67d4bed4c834e437cd411d7e0b8642e4d3 |
"""
FROWNS LICENSE
Copyright (c) 2001-2003, Brian Kelley
All rights reserved.
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are
met:
* Redistributions of source code must retain the above copyright
notice, this list of... | ubccr/pinky | pinky/canonicalization/tokens.py | Python | bsd-2-clause | 7,827 | [
"Brian"
] | d8d438e3fb19157941b3fc13a17a02c7c7bbc0cf0be6374429cd8640b9e0cf57 |
import os
import version
from setuptools import setup, find_packages
setup(name="zgres",
version=version.getVersion(),
packages=find_packages(),
author='Brian Sutherland',
author_email='brian@vanguardistas.net',
url='https://github.com/jinty/zgres',
description="Database Connection... | jinty/zgres | setup.py | Python | mit | 1,537 | [
"Brian"
] | 51448286b4b2120bc80734b68d8d3b87f28ed3f41fde6df3e504988ee80d1366 |
# coding=utf-8
# Copyright 2022 The Google Research Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicab... | google-research/google-research | homophonous_logography/neural/eval.py | Python | apache-2.0 | 12,313 | [
"Gaussian"
] | 362e980fb7b42d264545d7564f96587a4c0f1685fb1be72a779a339d8b0544fe |
#
# gPrime - A web-based genealogy program
#
# Copyright (C) 2008 Brian G. Matherly
# Copyright (C) 2008 Jerome Rapinat
# Copyright (C) 2008 Benny Malengier
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Softw... | sam-m888/gprime | gprime/filters/rules/source/_hasgallery.py | Python | gpl-2.0 | 1,814 | [
"Brian"
] | a3aa41247a0cc36195f5c9b0395995a498f1df2eaaefbdc52549e9248fed6829 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
Installation:
pip install git+https://github.com/Erotemic/rob.git
Developing:
git clone https://github.com/Erotemic/rob.git
pip install -e rob
"""
import sys
from os.path import exists
from setuptools import find_packages
from setuptools import setup
def... | Erotemic/local | rob/setup.py | Python | gpl-3.0 | 7,471 | [
"VisIt"
] | 4ae18bc32c3cef2f7afb4fcef210bd4e11707d68212c5e10840d9566c5fe4ea4 |
# coding: utf-8
import os
import unittest
import time
from pymatgen.core.structure import Molecule
from pymatgen.analysis.graphs import MoleculeGraph
from pymatgen.analysis.local_env import OpenBabelNN
from pymatgen.util.testing import PymatgenTest
from pymatgen.analysis.fragmenter import Fragmenter, metal_edge_exten... | gVallverdu/pymatgen | pymatgen/analysis/tests/test_fragmenter.py | Python | mit | 7,009 | [
"pymatgen"
] | 3c3abdf9c4b2414b99b0d4a2684299be20370a4bb96d52ff0b4f601be022a2f2 |
"""
Integration with native distribution package managers.
@since: 0.28
"""
# Copyright (C) 2009, Thomas Leonard
# See the README file for details, or visit http://0install.net.
from zeroinstall import _
import os, platform, re, subprocess, sys
from logging import warn, info
from zeroinstall.injector import namespace... | pombredanne/zero-install | zeroinstall/injector/distro.py | Python | lgpl-2.1 | 20,790 | [
"VisIt"
] | e9cc2355938547aee701b1d6584b42cf0c507d99c4054948f4e69820b483cdba |
"""
@author: rhallmen
@date: 19.06.2017
"""
from antlr4 import *
from sxlLexer import sxlLexer
from sxlParser import sxlParser
from sxlVisitor import sxlVisitor
class RegisterAddressVisitor(sxlVisitor):
"""
Parse a sxl file and return an array of all found register addresses
"""
def __init__(self):
... | nussbrot/AdvPT | python/RegisterAddressVisitor.py | Python | mit | 2,553 | [
"VisIt"
] | 59e8782e3de05d301dfb7818f1b5b6137d86d90f7e2ff5d21f7bacbb4174c183 |
from chainer.functions.connection import linear
from chainer import initializers
from chainer import link
from chainer import variable
class Linear(link.Link):
"""Linear layer (a.k.a.\\ fully-connected layer).
This is a link that wraps the :func:`~chainer.functions.linear` function,
and holds a weight ... | kashif/chainer | chainer/links/connection/linear.py | Python | mit | 4,356 | [
"Gaussian"
] | 404d1e18d8f00b3ecabd3d2e9cf3941816d30cb88e2b1f90b79875de0a7e6b63 |
# Create your views here.
from datetime import datetime, date, timedelta
import re
from django.core.cache import cache
from django.core.management import call_command
from django.utils import timezone
from django.http import HttpResponse
from django.shortcuts import redirect, get_object_or_404
from django.template imp... | tbpmig/mig-website | event_cal/views.py | Python | apache-2.0 | 136,680 | [
"VisIt"
] | a0645c0f84a793f21d722374a26e33b7ae42ac0266c9974506d034db48b9392d |
# Lint as: python3
# Copyright 2021 Google Inc. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by a... | google/glazier | glazier/lib/terminator_test.py | Python | apache-2.0 | 2,320 | [
"VisIt"
] | c00c0befc3ccf3d887e2c2a15e0b769b0ca65647c5450f664ee05fd7680c4bcc |
from pywps import Process, LiteralInput, ComplexInput, ComplexOutput
from pywps import Format
from plotter import simple_plot
import logging
LOGGER = logging.getLogger('PYWPS')
AIR_DS = 'https://www.esrl.noaa.gov/psd/thredds/fileServer/Datasets/ncep.reanalysis.derived/surface/air.mon.ltm.nc'
class SimplePlot(Proc... | bird-house/birdhouse-workshop | tutorials/11_pywps_testing/processes/wps_simple_plot.py | Python | apache-2.0 | 1,999 | [
"NetCDF"
] | 0accfa82fca9e65e5ffdef21d90b139f0f41f9ba11a2de2da2d8d365201e17fe |
#!/usr/bin/env python
""" MultiQC module to parse output from Bowtie 1 """
from __future__ import print_function
from collections import OrderedDict
import logging
import re
from multiqc import config
from multiqc.plots import bargraph
from multiqc.modules.base_module import BaseMultiqcModule
# Initialise the logge... | robinandeer/MultiQC | multiqc/modules/bowtie1/bowtie1.py | Python | gpl-3.0 | 6,826 | [
"Bowtie"
] | 9b94119e6d6edd6684af92118505c97e85003bfcb09cde68c95ab4b4473c45f3 |
__author__ = 'westonnovelli'
import requests
import json
import csv
"""
This script will grab some data from trello and save it as a csv file.
This script is set up to grab card data from a given board from only the open cards.
You can of course edit the request to get other information. For details visit
trello's ... | westonnovelli/trello_to_csv | trello_to_csv.py | Python | mit | 1,372 | [
"VisIt"
] | 1994e6adc7e23d1960efe94b94327f30ed05fd14df6961cb56b714071a0f32a1 |
import pygame
import random
pygame.display.set_caption("Multi Bingo")
screen = pygame.display.set_mode((0,0))
screen.fill([0,0,0])
pygame.mouse.set_visible(False)
meter = pygame.image.load('graphics/assets/black_register_cover.png').convert()
odds = pygame.image.load('galaxy/assets/odds.png').convert_alpha()
time = ... | bingopodcast/bingos | bingo_emulator/graphics/galaxy.py | Python | gpl-3.0 | 45,236 | [
"Galaxy"
] | def076da06349ea76dd190504acb8714f77f467da73dcd3273ed0cbcc3439c80 |
"""
========================================
Special functions (:mod:`scipy.special`)
========================================
.. module:: scipy.special
Nearly all of the functions below are universal functions and follow
broadcasting and automatic array-looping rules. Exceptions are noted.
Error handling
==========... | nvoron23/scipy | scipy/special/__init__.py | Python | bsd-3-clause | 21,535 | [
"Gaussian"
] | b18d788f9ff85296acbeb0f6e6040c5033a1a30719ef50bcd1374f8eafa4c5a6 |
import sys, os, re
import numpy as np
import scipy as sp
from numpy.matlib import *
#from numpy.matlib import sqrt
from scipy.linalg import *
#from scipy.linalg import
from numba import jit
__author__ = 'Sean M. Ryno'
__copyright__ = 'Copyright 2016, Sean M. Ryno'
__credits__ = ['Sean M. Ryno', 'J. J. Goings', 'Brad ... | sryno/rynosm | transfer_integral/transfer_integral_11082016.py | Python | gpl-3.0 | 54,025 | [
"ADF",
"Gaussian",
"ORCA",
"Q-Chem"
] | 23fddff8cc037e71afacb6095063a639b0a66a0c963467d45f276c597c6fcd30 |
import os
import sys
import numpy as np
import subprocess
from itertools import dropwhile
from collections import defaultdict
import emase
DATA_DIR = os.getenv('GBRS_DATA', '.')
def is_comment(s):
return s.startswith('#')
def get_names(idfile):
ids = dict()
master_id = 0
with open(idfile) as fh:
... | churchill-lab/gbrs | gbrs/emase_utils.py | Python | gpl-3.0 | 12,325 | [
"Bowtie"
] | b8a6eb8b0cb1ca8b3aeab83b5b1b3bbd72fc865d2b3019fe92ff526b34762997 |
#! /usr/bin/python
# -*- coding: utf-8 -*-
#
# Vladimír Slávik 2008
# Python 2.5
#
# for Simutrans
# http://www.simutrans.com
#
# code is public domain
#
# read all dat files in all subfolders
# sort out houses
# build spectrogram-like image charts for count=f(level,year)
import os, copy
import simutools
Data... | simutrans/pak128 | tools/house-spectrogram.py | Python | artistic-2.0 | 6,610 | [
"VisIt"
] | 4edf6f3f592d169259d423fae0792383fafab57cecbd14a42901f01a0a054409 |
# -*- coding: utf-8 -*-
''' Diagram display a property defined over linear elements. '''
__author__= "Luis C. Pérez Tato (LCPT) , Ana Ortega (AO_O) "
__copyright__= "Copyright 2016, LCPT, AO_O"
__license__= "GPL"
__version__= "3.0"
__email__= "l.pereztato@ciccp.es, ana.ortega@ciccp.es "
from miscUtils import LogMe... | lcpt/xc | python_modules/postprocess/xcVtk/element_property_diagram.py | Python | gpl-3.0 | 6,110 | [
"VTK"
] | 923cdf8e4d9c773922888c7cc6decd69a40760e62fb9e7f2eea8708651353c31 |
########################################################################
# File : DiracSiteAgent.py
# Author : Andrei Tsaregorodtsev
########################################################################
"""
Agent to manage a DIRAC site, it submits and monitors pilots to a local cluster
"""
__RCSID__ = "$Id$"
... | Andrew-McNab-UK/DIRAC | WorkloadManagementSystem/Agent/DiracSiteAgent.py | Python | gpl-3.0 | 10,034 | [
"DIRAC"
] | 2c93c1b22205c81680d97708f9dc99c61c3152afece579358b14eee7bd1b99e8 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
This module implements DefectCompatibility analysis for consideration of
defects
"""
import logging
from monty.json import MSONable
from pymatgen.core import Structure
from pymatgen.analysis.defects.corre... | mbkumar/pymatgen | pymatgen/analysis/defects/defect_compatibility.py | Python | mit | 29,617 | [
"pymatgen"
] | 9013fdf94b2a6ebca5455746e2693d0091e1dc7e1fda6e45c1b7f81de0a6d0bc |
#!/usr/bin/env python
"""
Estimate epidemic model parameters by comparing simulations to "observed" phylogeny.
"""
import sys
sys.setrecursionlimit(10000)
import os
import multiprocessing as mp
from phyloK2 import PhyloKernel
import random
import rcolgem
from Bio import Phylo
from copy import deepcopy
import time
fro... | ArtPoon/kamphir | kamphir.py | Python | bsd-3-clause | 31,742 | [
"Gaussian"
] | 846b6cc52e6e3ba3aca5795166cc227972ea00f981c11d3b922f1195555dd9b2 |
# Miscellaneous code for analysis of S4G bar fractions
import copy
import math
import random
import numpy as np
random.seed()
# lower and upper bounds of 68.3% confidence interval:
ONESIGMA_LOWER = 0.1585
ONESIGMA_UPPER = 0.8415
def Read2ColumnProfile( fname ):
"""Read in the (first) two columns from a simple t... | perwin/s4g_barfractions | s4gutils.py | Python | bsd-3-clause | 15,400 | [
"Galaxy",
"Gaussian"
] | 268b15703d8c863f20bfae2351da488bce35298a53cbdec818eb2ee3e2439a80 |
'''
Set up Visual Sudio 2010 to build a specified MPIR configuration
Copyright (C) 2011, Brian Gladman
32-bit:
x86w: x86, i386, i486, i586, pentium, pentiummmx, k6, k62, k63, k7, athlon, viac3, viac32, x86_64
p6: pentiumpro, i686
mmx: pentium2
sse2: pentium4, prescott, core, netburst, netburstlahf
p3mmx: penti... | libtetcoin/mpir | build.vc10/mpir_config.py | Python | gpl-3.0 | 28,850 | [
"Brian"
] | 3f3cfcb22f7d3380d927d61262f1c61a9c0353f9657665c05b62a26973ed0f31 |
"""
A general-purpose Simulation class for discrete events.
The Simulation object is the central object of a simulation. It
handles the simulation clock time and maintains communication between
the components of the simulation.
A simulation is structured as a directed graph of event-processing
nodes called EventProc... | Tasignotas/topographica_mirror | topo/base/simulation.py | Python | bsd-3-clause | 64,086 | [
"NEURON"
] | 58ee8bd6a2123b03f76b296b195ad4702e2d04de54442c07eb764f88966c4bf9 |
"""
A command line interface to the qcfractal server.
"""
import argparse
import json
import logging
import os
import signal
from enum import Enum
from math import ceil
from typing import List, Optional, Union
import tornado.log
import yaml
from pydantic import Field, validator
import qcengine as qcng
import qcfract... | psi4/DatenQM | qcfractal/cli/qcfractal_manager.py | Python | bsd-3-clause | 47,982 | [
"NWChem"
] | 1b57b92e2e7431e777b77bc36cfc6c66433344a069ddbaa675adc74075b0e7ae |
# Copyright (c) 2017-2019 Uber Technologies, Inc.
# SPDX-License-Identifier: Apache-2.0
import logging
import os
import time
from unittest import TestCase
import numpy as np
import pytest
import torch
import pyro
import pyro.distributions as dist
import pyro.optim as optim
from pyro.distributions.testing import fake... | uber/pyro | tests/integration_tests/test_conjugate_gaussian_models.py | Python | apache-2.0 | 25,479 | [
"Gaussian"
] | d0b709e155fe0b2ad936c49b1596359cd77bc04c5e32badf381d9d9e50ef9b56 |
# smCounter: barcode-aware variant caller
# Chang Xu. 23May2016
import os
import datetime
import subprocess
import math
import operator
import argparse
import random
import multiprocessing
import traceback
from collections import defaultdict
# 3rd party modules
import pysam
import scipy.stats
# global contants (note... | xuchang116/smCounter | smCounter.bak.py | Python | mit | 42,670 | [
"pysam"
] | 24b2e40b44314c5e2a58b4448b44320072261d2c2c1ca59ec20be31708cb76dd |
#
# Brian C. Lane <bcl@redhat.com>
#
# Copyright 2012 Red Hat, Inc.
#
# This copyrighted material is made available to anyone wishing to use, modify,
# copy, or redistribute it subject to the terms and conditions of the GNU
# General Public License v.2. This program is distributed in the hope that it
# will be useful,... | atodorov/pykickstart | tests/commands/reboot.py | Python | gpl-2.0 | 3,390 | [
"Brian"
] | 508ac961e58fe05686846d2acb88eb508420ffe942ba4db1e55d53baf410fd41 |
''' <h1> Library for specular magnetic x-ray and neutron reflectivity</h1>
The magnetic reflectivity is calculated according to: S.A. Stephanov and S.K Shina PRB 61 15304. for
the full anisotropic model. It also one simpler model where the media is considered to be isotropic but
with different refractive indices for ... | joshp123/genx | models/mag_refl.py | Python | gpl-3.0 | 51,509 | [
"Gaussian"
] | afa9c1f5c6d33a2906a06a88dfdb4758cb9c149549d912cab7f0e69876bb5160 |
#!/usr/bin/env python
# Copyright (c) 2009, South African Astronomical Observatory (SAAO) #
# All rights reserved. #
"""
MOSTOOLS is a package written that handles the edge detection,
Author Version Date
----------------------------------... | crawfordsm/pysalt | saltspec/mostools.py | Python | bsd-3-clause | 23,332 | [
"Gaussian"
] | 7acd7954b22cc5bc40536ef9e55229a977b0971479aa62f38aa98395d0ea301b |
#==============================================================================
#
# CodeGenerator.py
#
# This file is part of ANNarchy.
#
# Copyright (C) 2013-2019 Julien Vitay <julien.vitay@gmail.com>,
# Helge Uelo Dinkelbach <helge.dinkelbach@gmail.com>
#
# This program is free software: you can ... | vitay/ANNarchy | ANNarchy/generator/CodeGenerator.py | Python | gpl-2.0 | 42,349 | [
"NEURON"
] | 36d1b709030c828b615451be55056d9e7ab51783704c8e0efac5955c7262dc56 |
from __future__ import absolute_import
from unittest import TestCase, skip
from ccdproc import CCDData
from astropy.convolution import convolve, Gaussian1DKernel, Box1DKernel
from astropy.io import fits
from astropy.modeling import Model
from astropy.modeling import (models,
fitting)
impo... | simontorres/goodman | goodman_pipeline/core/tests/test_core.py | Python | bsd-3-clause | 93,142 | [
"Gaussian"
] | 1939d186a231a76396be193a4f7f4bd5bff45f376c0ba2a928e02682a19ba9b6 |
# -*- coding: utf-8 -*-
from __future__ import unicode_literals
import tensorflow as tf
import numpy as np
# load data
from tensorflow.examples.tutorials.mnist import input_data
mnist = input_data.read_data_sets('MNIST_data', one_hot=True)
# create a graph and then launch it in a session
sess = tf.InteractiveSession(... | KennyCandy/HAR | main.py | Python | mit | 5,139 | [
"NEURON"
] | 9b9f6df96dfb6289d9e69095bff916c2a844a30a9087911d9a4b58a0f7085ff9 |
#!/usr/bin/env python
# vim:fileencoding=utf-8
from __future__ import (unicode_literals, division, absolute_import,
print_function)
__license__ = 'GPL v3'
__copyright__ = '2013, Kovid Goyal <kovid at kovidgoyal.net>'
import sys
from functools import partial
from PyQt4.Qt import (
QMainWin... | nozuono/calibre-webserver | src/calibre/gui2/tweak_book/editor/image.py | Python | gpl-3.0 | 10,151 | [
"Gaussian"
] | 865a9f839566631085832a4da5597dddc29171383ee53b9cf7e14824957d0a17 |
# -*- coding: utf-8 -*-
from __future__ import unicode_literals
from django.db import models, migrations
import jsonfield.fields
import django.utils.timezone
from django.conf import settings
import swapper
class Migration(migrations.Migration):
dependencies = [
migrations.swappable_dependency(settings.A... | I-TECH-UW/mwachx | contacts/migrations/0001_initial.py | Python | apache-2.0 | 15,623 | [
"VisIt"
] | 305d463904596dedc4e4fa0250bb8c67a65c99fa2d74bc94b4038ada414cb314 |
# Copyright 2011 by Peter Cock. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
"""Simple 'print-and-compare' unit test for fasta-m10 parser.
Created to check for any regression... | updownlife/multipleK | dependencies/biopython-1.65/Tests/test_AlignIO_FastaIO.py | Python | gpl-2.0 | 2,788 | [
"Biopython"
] | b8d968f20e4c1f89ee1b81c2bab1388141a6c647ead4ec39a0dd628ce7199f0d |
#------------------------------------------------------------------------------
#
# This file is part of the SternheimerGW code.
#
# Copyright (C) 2010 - 2018
# Henry Lambert, Martin Schlipf, and Feliciano Giustino
#
# SternheimerGW is free software: you can redistribute it and/or modify
# it under the terms of the GNU... | mmdg-oxford/SternheimerGW | install/generate_module.py | Python | gpl-3.0 | 1,688 | [
"ESPResSo"
] | f165960907189e032a926240614e6ed18632a391e759bca29581a14f59dea65b |
from .. import Provider as PersonProvider
class Provider(PersonProvider):
formats_male = (
'{{first_name_male}} {{last_name}}',
'{{first_name_male}} {{last_name}}',
'{{first_name_male}} {{last_name}}',
'{{first_name_male}} {{last_name}}',
'{{first_name_male}} {{last_name}}... | danhuss/faker | faker/providers/person/it_IT/__init__.py | Python | mit | 21,851 | [
"Avogadro"
] | be2a3fcd5b7b670809137952493818c75ae6a604fb6258f3cc486b07f7442a40 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
# parse_qsl moved to urlparse module in v2.6
import sys
import os.path
sys.path.append(os.path.abspath(os.path.join(os.path.dirname(__file__), os.path.pardir)))
import webbrowser
import oauth2 as oauth
from urlparse import parse_qsl
REQUEST_TOKEN_URL = 'https://api.twit... | biancini/TwitterAnalyzer | TwitterDownloader/utilities/getaccesstoken.py | Python | apache-2.0 | 2,793 | [
"VisIt"
] | 2301c904125464c3edeb0f9a2f9f54fb575c51c966a11eaad5856f7a3646ca50 |
from Bio import Phylo
from collections import OrderedDict
from xenoGI import trees
## Globals
ROOT_PARENT_NAME = "" # name for the parent of the root node in rooted trees
## Classes
class Tree:
def __init__(self, nodeConnectD=None):
'''Base class to be inherited by Rtree and Utree. Key internal data
str... | ecbush/xenoGI | xenoGI/Tree.py | Python | gpl-3.0 | 46,830 | [
"Biopython"
] | 3196c579f666c07380b0ba37f802c6c60ee962ca6e60abf39fc13db065a0d5e6 |
#!/usr/bin/env python
#
# Copyright (c) 2016 Matt Davis, <mdavis@ansible.com>
# Chris Houseknecht, <house@redhat.com>
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free ... | ravibhure/ansible | contrib/inventory/azure_rm.py | Python | gpl-3.0 | 35,229 | [
"Galaxy"
] | 07fb0508130298c5f5162cd68450a427a2735aa694c6eb8cd58d33bbc0fef4dd |
from ..codes import CodeRun
from .input import OctopusInput
import os
class OctopusRun(CodeRun):
def __init__(self, workdir='.'):
CodeRun.__init__(self, executable='octopus', workdir=workdir, use_mpi=True)
self.stdout_filename = 'octopus.out'
self.stderr_filename = 'octopus.err'
def ... | MaterialsDiscovery/PyChemia | pychemia/code/octopus/run.py | Python | mit | 735 | [
"Octopus"
] | f728776cf875320ad395e8871adc49ade94e30f9919e73e3984ebf2a6fc9908c |
########################################################################
# Author: Krzysztof.Ciba@NOSPAMgmail.com
# Date: 2012/12/11 18:04:25
########################################################################
""" :mod: SubprocessTests
=======================
.. module: SubprocessTests
:synopsis: u... | andresailer/DIRAC | Core/Utilities/test/Test_Subprocess.py | Python | gpl-3.0 | 2,216 | [
"DIRAC"
] | 279e77eec732c76a68a80fc498a82dabd99e809a1534395c811770f6a3aafe85 |
# -*- coding: utf-8 -*-
#
# Copyright (C) 2007-2008 Red Hat, Inc.
# This file is part of python-fedora
#
# python-fedora is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version 2.1 of the Lice... | vivekanand1101/python-fedora | fedora/tg/visit/jsonfasvisit2.py | Python | gpl-2.0 | 5,807 | [
"VisIt"
] | 3c24341e254cbeb3d3333e05490c0b5722ca7f78236d83d740097b61b45333b0 |
# Copyright (c) 2012 The Chromium Authors. All rights reserved.
# Use of this source code is governed by a BSD-style license that can be
# found in the LICENSE file.
"""Top-level presubmit script for Chromium.
See http://dev.chromium.org/developers/how-tos/depottools/presubmit-scripts
for more details about the presu... | CapOM/ChromiumGStreamerBackend | PRESUBMIT.py | Python | bsd-3-clause | 70,978 | [
"VisIt"
] | ac8b8c60d33be7b32c4dda12cb4d050604841e6028d19b446c49a1dde0f006d7 |
'''TB Animation Tools is a toolset for animators
*******************************************************************************
License and Copyright
Copyright 2015-Tom Bailey
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public Licen... | tb-animator/tbtools | apps/tb_keyCommands.py | Python | mit | 32,815 | [
"VisIt"
] | 2fc9d4c215d5f188a0571fe7f5b8a6d22aaba0bcde0e936018e35c7d1f2ae407 |
import json
import orca
import numpy as np
import pandas as pd
import pandas.testing as pdt
import pytest
from .. import server
@pytest.fixture
def tapp():
server.app.config['TESTING'] = True
return server.app.test_client()
@pytest.fixture(scope='module')
def dfa():
return pd.DataFrame(
{'a': ... | UDST/orca | orca/server/tests/test_server.py | Python | bsd-3-clause | 10,740 | [
"ORCA"
] | 3c00b050dd64968fc3b201ba300c4b494b0a8b9c85c37ab8f219be2ea25ed425 |
#!/usr/bin/env python3
#
# Copyright 2015 by Raytheon BBN Technologies Corp. All Rights Reserved.
import ast
import os
import sys
from copy import deepcopy
# Find the directory that this executable lives in;
# munge the path to look within the parent module
#
if __name__ == '__main__':
DIRNAME = os.path.normpat... | BBN-Q/pyqgl2 | src/python/attic/substitute.py | Python | apache-2.0 | 17,733 | [
"VisIt"
] | 945f3bcf92d0cdfa80709a50be8293e6dc0e5672f2627d965a4e10be6feefeb4 |
# -*- coding: utf-8 -*-
# Copyright 2022 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or... | googleapis/python-dialogflow | tests/unit/gapic/dialogflow_v2beta1/test_session_entity_types.py | Python | apache-2.0 | 103,177 | [
"Octopus"
] | 298170408b8cdfb571bab9f6b31d06e3bb6edaab040d75efd0c9e5fed442a608 |
# This code is part of Ansible, but is an independent component.
# This particular file snippet, and this file snippet only, is BSD licensed.
# Modules you write using this snippet, which is embedded dynamically by Ansible
# still belong to the author of the module, and may assign their own license
# to the complete wo... | jasonzzz/ansible | lib/ansible/module_utils/basic.py | Python | gpl-3.0 | 89,998 | [
"VisIt"
] | d68a1bdbb36d6dca67d7778492cec3d1bff084c170f1e2a08b5d7aa6d2ceb1f0 |
from math import log, exp
import numpy as np
class SimulatedData:
def __init__(self, hr_ratio,
average_death = 5,
censor_mode = 'end_time', end_time = 15, observed_p = None,
num_features = 10, num_var = 2,
treatment_group = False):
"""
Factory class for producing sim... | jaredleekatzman/DeepSurv | deepsurv/datasets.py | Python | mit | 6,486 | [
"Gaussian"
] | 19c0cdffd019a4563c2a8bf71b357b71034d437869fdd4e8bf034f6d564d8cab |
import ctypes
import math
import numpy
from six import moves
from chainer import cuda
from chainer import function
from chainer.utils import conv
from chainer.utils import type_check
if cuda.cudnn_enabled:
cudnn = cuda.cudnn
libcudnn = cuda.cudnn.cudnn
_fwd_pref = libcudnn.CUDNN_CONVOLUTION_FWD_SPECIFY_W... | sou81821/chainer | chainer/functions/connection/convolution_2d.py | Python | mit | 14,484 | [
"Gaussian"
] | 47a1cd541c79e1faee292405959422b4d61a5137ebde3db7af438b834e8c5c30 |
import numpy as np
import nose.tools as nt
import hyperspy.api as hs
from hyperspy.models.model1D import Model1D
from hyperspy.misc.test_utils import ignore_warning
class TestPowerLaw:
def setUp(self):
s = hs.signals.Spectrum(np.zeros(1024))
s.axes_manager[0].offset = 100
s.axes_manager[... | to266/hyperspy | hyperspy/tests/model/test_components.py | Python | gpl-3.0 | 11,408 | [
"Gaussian"
] | 91eafb4f238965882b18e2da638e9136656f4f0130cf17edd89d3fdcfb74ada4 |
"""
Module simplifying manipulation of XML described at
http://libvirt.org/formatdomain.html
"""
import logging
from autotest.client.shared import error
from virttest import xml_utils
from virttest.libvirt_xml import base, accessors, xcepts
from virttest.libvirt_xml.devices import librarian
class VMXMLDevices(list):... | autotest/virt-test | virttest/libvirt_xml/vm_xml.py | Python | gpl-2.0 | 84,182 | [
"VisIt"
] | f6adf0f4783e13015525335c4d672dba3ed0350cae06031ece0b7029879e57fd |
# Copyright (C) 2013 Jeremy S. Sanders
# Email: Jeremy Sanders <jeremy@jeremysanders.net>
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# ... | KDB2/veusz | veusz/utils/safe_eval.py | Python | gpl-2.0 | 5,602 | [
"VisIt"
] | 97347c886f440e4bde6ae216343473f3a0baf144971af6e239604e3f8cabebe0 |
# Copyright 2007-2020 The HyperSpy developers
#
# This file is part of HyperSpy.
#
# HyperSpy is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later ... | dnjohnstone/hyperspy | hyperspy/tests/signal/test_eds_sem.py | Python | gpl-3.0 | 13,866 | [
"Gaussian"
] | 3559b828cf47b981f961a82dfde0ca70827ddb4b81e3e6ae74dfa32eedad95a5 |
"""
Takes care of reading from BAM files and scattering (parallelizing) pipelines
See docs/bamtoolz.md for algorithm details"""
from collections import OrderedDict
import time
from multiprocessing import Process, Queue
import queue
import pysam
import cytoolz.curried as cyt
import logging
logger = logging.getLogger(... | sbg/Mitty | mitty/analysis/bamtoolz.py | Python | apache-2.0 | 12,331 | [
"pysam"
] | 40bb191f8712ca2fbc0d3f7eeea6b9d3dd1fb047eb9c3b6b0f1b02bb016d5c63 |
# coding: utf-8
# pylint: disable = invalid-name, W0105, C0111, C0301
"""Scikit-Learn Wrapper interface for LightGBM."""
from __future__ import absolute_import
import numpy as np
from .basic import Dataset, LightGBMError
from .compat import (SKLEARN_INSTALLED, LGBMClassifierBase, LGBMDeprecated,
... | fstonezst/LightGBM | python-package/lightgbm/sklearn.py | Python | mit | 33,894 | [
"Gaussian"
] | ec331f08bcdc56d1804f0025e47477039df4ba59555578dbaa089f65d27ccb8f |
# -*- coding: utf-8 -*-
# vi:si:et:sw=4:sts=4:ts=4
##
## Copyright (C) 2012 Async Open Source <http://www.async.com.br>
## All rights reserved
##
## This program is free software; you can redistribute it and/or modify
## it under the terms of the GNU General Public License as published by
## the Free Software Foundati... | andrebellafronte/stoq | stoq/gui/test/test_stock.py | Python | gpl-2.0 | 7,042 | [
"VisIt"
] | 0148a8ae9288ab747a043bd19b7a1b40c8165ce5d72ec919cf82fe97ba17cd9f |
from __future__ import absolute_import
from .meta import *
from .regression import *
from .gaussian import *
from .uniform import *
from .binomial import *
from .multinomial import *
from .negativebinomial import *
from .geometric import *
from .poisson import *
| mattjj/pybasicbayes | pybasicbayes/distributions/__init__.py | Python | mit | 265 | [
"Gaussian"
] | 0b3ea2afedcccb40fc7c97efc2db045d159e89679eba90778cff6a668d64d1b1 |
from __future__ import absolute_import, print_function
from datetime import datetime
import sys
import re
import urllib
from django import forms
from django.conf import settings
from django.contrib.auth.models import User, Group
from django.contrib.gis.db import models as spatial_models
from django.core.validators im... | dwitvliet/CATMAID | django/applications/catmaid/models.py | Python | gpl-3.0 | 45,066 | [
"NEURON"
] | 28955dca7c6140457a5a6be88ed6b4cc515fd0c2badbbc14192f99abcc42fbb1 |
# Copyright (c) 2021, TU Wien, Department of Geodesy and Geoinformation
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice,... | TUW-GEO/ascat | src/ascat/cgls.py | Python | mit | 7,019 | [
"NetCDF"
] | 60485066224ad668588a88258a9ac6cee99f52ddee66ec8a15db1178235c67de |
import scrapelib
import datetime
import os
import re
from collections import defaultdict
from billy.scrape import ScrapeError
from billy.scrape.bills import BillScraper, Bill
from billy.scrape.votes import Vote
from billy.scrape.utils import convert_pdf
import lxml.html
def action_type(action):
# http://www.scs... | showerst/openstates | openstates/sc/bills.py | Python | gpl-3.0 | 12,108 | [
"VisIt"
] | b594af84e406e8038e88e3faf07310b81a0058c0453aa661d418a9067a48da3a |
# pylint: disable=invalid-name
from __future__ import absolute_import, division, print_function
import numpy
import os
import re
from mantid.kernel import V3D
from mantid.api import (MatrixWorkspace, ITableWorkspace)
from mantid.simpleapi import (mtd, CreateEmptyTableWorkspace, DeleteWorkspace,
... | ScreamingUdder/mantid | scripts/Calibration/tube.py | Python | gpl-3.0 | 38,360 | [
"Gaussian"
] | 2daa3bba934be48c3f1f6dfbe38939e3a2ef7ed5bced04898ac9ce91e2725466 |
import datetime
import git
import github
import os
import shutil
import sys
import tempfile
import tenacity
import time
from collections import OrderedDict
from distutils.util import strtobool
from six.moves import configparser
from pip._internal.main import main as pip_main
import urllib3
import yaml
from infrared... | rhos-infra/InfraRed | infrared/core/services/plugins.py | Python | gpl-3.0 | 29,299 | [
"Galaxy"
] | cb1263d4c588d0bcb937ec87cc8a5183f878dffd9496b5848be61188cc01dcbd |
# MIT License
#
# Copyright (C) IBM Corporation 2019
#
# Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated
# documentation files (the "Software"), to deal in the Software without restriction, including without limitation the
# rights to use, copy, modify, merge... | IBM/differential-privacy-library | diffprivlib/mechanisms/base.py | Python | mit | 7,783 | [
"Gaussian"
] | de317e4a4e3ff2996a10422fbadd5f8896543131e43dac382c2ff7471ed0af1e |
# -*- coding: utf-8 -*-
#
# test_stdp_dopa.py
#
# This file is part of NEST.
#
# Copyright (C) 2004 The NEST Initiative
#
# NEST is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 2 of the License,... | magnastrazh/NEUCOGAR | nest/dopamine/test_files/test_stdp_dopa.py | Python | gpl-2.0 | 7,964 | [
"NEURON"
] | 67eb9f16cf105fcd3d8edaa5a5a90ed154e747acdb96be11fb102862b9a8f1f8 |
"""Code to translate DNA or RNA into proteins (DEPRECATED).
Instead of Bio.Translate, for translation you are now encouraged to use the
Seq object's translate method, or the translate function in the Bio.Seq
module. Translate-to-stop functionality is via an optional argument.
Bio.Seq does not offer any back-translat... | BlogomaticProject/Blogomatic | opt/blog-o-matic/usr/lib/python/Bio/Translate.py | Python | gpl-2.0 | 5,689 | [
"Biopython"
] | c9b55060be4c384b8fd75b53971d65c7721ace79f1f7eff0eb588e4b82ae5f8a |
from __future__ import unicode_literals, print_function
from sys import argv
from fnmatch import fnmatchcase
from functools import partial
import attr
from attr.validators import instance_of
from twisted.python.url import URL
from twisted.python.usage import Options
from twisted.internet.task import react
from twist... | exarkun/txflashair | src/txflashair/sync.py | Python | mit | 3,749 | [
"VisIt"
] | b3ea041556129fd5e1a9af1f3934c349a4db5140a29c509708834bafe784840e |
##############################################################################
# MDTraj: A Python Library for Loading, Saving, and Manipulating
# Molecular Dynamics Trajectories.
# Copyright 2012-2013 Stanford University and the Authors
#
# Authors: Peter Eastman, Robert McGibbon
# Contributors: Carlos Hernande... | mattwthompson/mdtraj | mdtraj/formats/pdb/pdbfile.py | Python | lgpl-2.1 | 29,740 | [
"MDTraj",
"OpenMM"
] | 1981962fc2929eb560fbd2d0aa1ce87a3dd2da22ae0eb44989bc17d902fbed3f |
#
# Copyright (C) 2013-2019 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later... | pkreissl/espresso | testsuite/python/virtual_sites_relative.py | Python | gpl-3.0 | 14,897 | [
"ESPResSo"
] | 60f355a0f2f45e78a1727be481378c90de250fb7002a66df84c32ae1bd30e794 |
## INFO ########################################################################
## ##
## cutils ##
## ====== ... | petervaro/cutils | internal/capi.py | Python | gpl-3.0 | 2,982 | [
"VisIt"
] | d84a690b0f0d188dd892dc866bdf50f52bc8c5b0fbe71195c0d3e67c37dfab52 |
# -*- coding: utf-8 -*-
"""Supports the Michelson Interferometer for Global High-resolution
Thermospheric Imaging (MIGHTI) instrument onboard the Ionospheric
CONnection Explorer (ICON) satellite. Accesses local data in
netCDF format.
Parameters
----------
platform : string
'icon'
name : string
'mighti'
tag : ... | jklenzing/pysat | pysat/instruments/icon_mighti.py | Python | bsd-3-clause | 8,681 | [
"NetCDF"
] | ab41b9ec6f9a550a4081c428409496a70c5fa4ba95be4c918265989150bb4838 |
#!/usr/bin/env python
# ----------------------------------------------------------------------------
# Copyright (c) 2013--, scikit-bio development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file COPYING.txt, distributed with this software.
# ---------------------... | kdmurray91/scikit-bio | setup.py | Python | bsd-3-clause | 4,380 | [
"scikit-bio"
] | ab66c3873b814767b4655aff056c1a90e187fd23e5f13590b2f1686d9f99ebfd |
# class generated by DeVIDE::createDeVIDEModuleFromVTKObject
from module_kits.vtk_kit.mixins import SimpleVTKClassModuleBase
import vtk
class vtkAppendSelection(SimpleVTKClassModuleBase):
def __init__(self, module_manager):
SimpleVTKClassModuleBase.__init__(
self, module_manager,
vt... | nagyistoce/devide | modules/vtk_basic/vtkAppendSelection.py | Python | bsd-3-clause | 493 | [
"VTK"
] | 0ba797d88e36baf64a6a8c53b26bb82bfd6019a3b294b573c459935f2c327f2e |
# 05.10.2007, c
# last revision: 25.02.2008
from sfepy import data_dir
filename_mesh = data_dir + '/meshes/3d/special/cube_sphere.mesh'
# Whole domain $Y$.
region_1000 = {
'name' : 'Y',
'select' : 'all',
}
# Domain $Y_1$.
region_1 = {
'name' : 'Y1',
'select' : 'cells of group 1',
}
# Domain $Y_2$.
r... | RexFuzzle/sfepy | tests/test_lcbc_3d.py | Python | bsd-3-clause | 1,853 | [
"VTK"
] | 7489a32e6ada0dc0f4583fd7e7971cc97820946b63d8eab6ced81d0841a8b738 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
import os
import unittest
import numpy as np
from pymatgen.core.structure import Structure
from pymatgen.io.abinit import ETSF_Reader
from pymatgen.util.testing import PymatgenTest
try:
import netCDF4
ex... | gmatteo/pymatgen | pymatgen/io/abinit/tests/test_netcdf.py | Python | mit | 2,903 | [
"ABINIT",
"pymatgen"
] | f380e75cd29051197956763205bf148d6ae9556319d13139df95af82e3ff98fa |
# -*- coding: utf-8 -*-
# Copyright (C) 2017 by Pedro Mendes, Virginia Tech Intellectual
# Properties, Inc., University of Heidelberg, and University of
# of Connecticut School of Medicine.
# All rights reserved.
# Copyright (C) 2010 - 2016 by Pedro Mendes, Virginia Tech Intellectual
# Properties, Inc., Universit... | jonasfoe/COPASI | copasi/bindings/python/unittests/Test_COutputAssistant.py | Python | artistic-2.0 | 3,119 | [
"COPASI"
] | de12e7a02819c43a43faf2299ca7d9dc07eb93b6817e3d39863aa6657831d24f |
# Copyright 2021 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# https://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, soft... | google-research/DP-FTRL | privacy.py | Python | apache-2.0 | 9,396 | [
"Gaussian"
] | 59e62763a1cf32f02dba63993bb44f2bfe53da27b15fed3a082efb98d3dac788 |
"""
Generates a logical specification from natural language.
"""
# Copyright (C) 2011-2013 Kenton Lee, Constantine Lignos, and Ian Perera
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, eith... | PennNLP/SLURP | ltlbroom/specgeneration.py | Python | gpl-3.0 | 38,251 | [
"VisIt"
] | 2185ea0fb2a42c1c6ab0b2a21c4e3ec9ffda5eda604b2fb960c0d3f1756832d0 |
"""!
@brief Cluster analysis algorithm: SOM-SC (Self-Organized Feature Map for Simple Clustering)
@details There is no paper on which implementation is based. Algorithm SOM-SC is adaptation of SOM for cluster analysis in simple way.
Basic idea: amount of cluster that should be allocated is defines amount... | annoviko/pyclustering | pyclustering/cluster/somsc.py | Python | gpl-3.0 | 5,780 | [
"Gaussian"
] | a52f45f26880e18963d479dec32df633be4ad08a7624f56be12318e4f6787430 |
_base_ = [
'../_base_/default_runtime.py', '../_base_/datasets/coco_detection.py'
]
# model settings
model = dict(
type='CornerNet',
backbone=dict(
type='HourglassNet',
downsample_times=5,
num_stacks=2,
stage_channels=[256, 256, 384, 384, 384, 512],
stage_blocks=[2, ... | open-mmlab/mmdetection | configs/cornernet/cornernet_hourglass104_mstest_8x6_210e_coco.py | Python | apache-2.0 | 3,404 | [
"Gaussian"
] | 5b534c8631a39c047f97ee2d9d3ed7a9e1b5d8c0d77bdce44903eea7734d77b7 |
from sqlalchemy import exceptions, schema, topological, util, sql
from sqlalchemy.sql import expression, operators, visitors
from itertools import chain
"""Utility functions that build upon SQL and Schema constructs."""
def sort_tables(tables, reverse=False):
"""sort a collection of Table objects in order of thei... | santisiri/popego | envs/ALPHA-POPEGO/lib/python2.5/site-packages/SQLAlchemy-0.4.5-py2.5.egg/sqlalchemy/sql/util.py | Python | bsd-3-clause | 9,494 | [
"VisIt"
] | 13dfc5bddab25d80406c41646df407c31b3d4bc36ddcb5e2a705146fb849addf |
# -*- coding: utf-8 -*-
#########################################################################
#
# Copyright (C) 2016 OSGeo
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 ... | MapStory/geonode | geonode/geoserver/tests.py | Python | gpl-3.0 | 44,671 | [
"VisIt"
] | 01ee58b451c9f3c029ab7f42e57e0443e829d3b339fb93624a85293efc1e3b61 |
#!/usr/bin/env python
# -*- coding:utf-8 mode:python; tab-width:4; indent-tabs-mode:nil; py-indent-offset:4 -*-
##
"""
test_conversion
~~~~~~~~~~~~~~
Test NWChem-to-others conversion routines
"""
from collections import OrderedDict
import sys
import unittest
from src.EMSL_local import EMSL_local
from src... | mattbernst/ebsel | tests/test_conversion.py | Python | mit | 9,216 | [
"GAMESS",
"Gaussian",
"NWChem"
] | 6106974eb6ea7a8fb0ac09b9df8b754b8222fc9a96e92a8242af8d0ceff3cdb3 |
# Copyright (c) 2011-2018, Ulf Magnusson
# SPDX-License-Identifier: ISC
"""
Overview
========
Kconfiglib is a Python 2/3 library for scripting and extracting information
from Kconfig (https://www.kernel.org/doc/Documentation/kbuild/kconfig-language.txt)
configuration systems.
See the homepage at https://github.com/u... | hezlog/rt-thread | tools/kconfiglib.py | Python | apache-2.0 | 224,638 | [
"VisIt"
] | 2da2877f95ea22a5190450b279e638d46aa163374d3b9dff2614a42f6cbe76b9 |
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