text stringlengths 12 1.05M | repo_name stringlengths 5 86 | path stringlengths 4 191 | language stringclasses 1
value | license stringclasses 15
values | size int32 12 1.05M | keyword listlengths 1 23 | text_hash stringlengths 64 64 |
|---|---|---|---|---|---|---|---|
# -*- coding: utf-8 -*-
from __future__ import absolute_import
import diaper
import fauxfactory
import hashlib
import iso8601
import random
import re
import command
import yaml
from contextlib import closing
from django.core.cache import cache
from django.core.exceptions import ObjectDoesNotExist
from django.core.mail... | psav/cfme_tests | sprout/appliances/tasks.py | Python | gpl-2.0 | 91,308 | [
"VisIt"
] | 26d41fbadceb20eadce5df64e63682ec862d97cf5d77c0bc126f5abc62330813 |
#!python
# encoding: utf-8
# ***** BEGIN LICENSE BLOCK *****
# Version: MPL 1.1/GPL 2.0/LGPL 2.1
#
# The contents of this file are subject to the Mozilla Public License
# Version 1.1 (the "License"); you may not use this file except in
# compliance with the License. You may obtain a copy of the License at
# http://www.... | herove/dotfiles | sublime/Packages/SublimeCodeIntel/libs/codeintel2/util.py | Python | mit | 28,763 | [
"VisIt"
] | a192ae3a3a018c7d5d853c49406f504cb070dbf009f29a8b1403e10acc505182 |
from __future__ import print_function
import numpy as np
import regreg.api as rr
from ...tests.instance import logistic_instance, gaussian_instance
from ..selection_map import M_estimator_map
from ..ci_approx_density import approximate_conditional_density
from ...randomized.query import naive_confidence_intervals
from... | selective-inference/selective-inference | selectinf/sandbox/approx_ci/tests/test_glm.py | Python | bsd-3-clause | 4,347 | [
"Gaussian"
] | 2f404b13aa2151103143b542b609c48d2695bd2b86878ba266c60483f4fc16fc |
# -*- coding: utf-8 -*-
"""
Module providing some test utilities.
"""
from __future__ import print_function, division, absolute_import
import os
import sys
import miniast
import specializers
import minitypes
import miniutils
import codegen
import treepath
from minitypes import *
from miniutils import *
from xmldumpe... | shiquanwang/numba | numba/minivect/tests/testutils.py | Python | bsd-2-clause | 1,785 | [
"VisIt"
] | 13aeb904bc61a697cc5977d22e12eb85aa764fd69ddee55a90a798e184f7bb4d |
import sys
import os
import numpy as np
import array
class ploadparticles(object):
def __init__(self, ns, wdir=None, datatype=None):
self.ns = ns
if wdir == None:
self.wdir = os.getcwd()+'/'
else:
self.wdir = wdir
if datatype == None:
dat... | aywander/pluto-outflows | Tools/pyPLUTO/pyPLUTO/part_read.py | Python | gpl-2.0 | 7,399 | [
"VTK"
] | aedad004ffd9cefc940ae0a271578ab02617b016d2c4707efefa4ce719e45191 |
"""
A simple testing framework for lldb using python's unit testing framework.
Tests for lldb are written as python scripts which take advantage of the script
bridging provided by LLDB.framework to interact with lldb core.
A specific naming pattern is followed by the .py script to be recognized as
a module which impl... | google/llvm-propeller | lldb/packages/Python/lldbsuite/test/dotest.py | Python | apache-2.0 | 39,707 | [
"VisIt"
] | 0fc88b15b6f969971c6d1aeaa2c3aeee26608110fbd3ca372a7d34b907f8a7a7 |
#!/usr/bin/env python
import datetime
import os
os.environ['DJANGO_SETTINGS_MODULE'] = 'homeworks.settings'
from django import setup
from django.db import transaction
setup()
import random
from faker import Factory
#from faker.providers import address
fake = Factory.create()
#fake.add_provider(address)
from visit i... | koebbe/homeworks | junk/dummy.py | Python | mit | 3,448 | [
"VisIt"
] | 464c64e3959843f6ca33a1579dfb5d8baa2187cff66bc72a31f43bc77e040552 |
#!/usr/bin/env python
# coding=utf-8
from biopredyn import resources, workflow, result as res
from matplotlib import pyplot as plt
import numpy as np
from COPASI import CCopasiMethod
# required inputs - first model
simulation_file = "generate_data.xml"
calibration_file = "calibration_data.txt"
validation_file = "vali... | TheCoSMoCompany/biopredyn | Prototype/scripts/model_discrimination.py | Python | bsd-3-clause | 3,601 | [
"COPASI"
] | fbe320d1c58aa46a947284f389afdd9d65e5cf6be85f5e0014aa3901eb717fe8 |
#!/usr/bin/env python
# -*- coding: iso-8859-1 -*-
# Documentation is intended to be processed by Epydoc.
"""
Introduction
============
The Munkres module provides an implementation of the Munkres algorithm
(also called the Hungarian algorithm or the Kuhn-Munkres algorithm),
useful for solving the Assignment Problem.... | jonodrew/matchex | munkres.py | Python | mit | 22,331 | [
"Brian"
] | 82374a3cc6d135aeb84f3dc2d71450cd510cf6432ddf46c46eb4f538135f46a2 |
from __future__ import print_function
import numpy as np
import matplotlib.pyplot as plt
import emcee
import glob
def simple_acf(x, y):
# fit and subtract straight line
AT = np.vstack((x, np.ones_like(x)))
ATA = np.dot(AT, AT.T)
m, b = np.linalg.solve(ATA, np.dot(AT, y))
y -= m*x + b
# perfor... | RuthAngus/kalesalad | code/simple_acf.py | Python | mit | 5,237 | [
"Gaussian"
] | c9dde128e4327c791551e51551b60227474a3482454f4e24f521a2aabeed5a5e |
from gpaw.transport.analysor import Transport_Plotter
import numpy as np
from pylab import *
import sys
plotter = Transport_Plotter()
plotter.plot_setup()
if len(sys.argv)<= 2:
if len(sys.argv[1]) <= 2:
vt = plotter.get_info('vtx', int(sys.argv[1]), 0)
else:
tmp = sys.argv[1].split('-')
... | qsnake/gpaw | doc/documentation/transport/transport_analysis_scripts/vtx.py | Python | gpl-3.0 | 619 | [
"GPAW"
] | 8d58562b7c33a88715a16ead1aad8c5d909befb141e123b0ee1165d35856e9ab |
#
# synctool.object.py WJ110
#
# synctool Copyright 2015 Walter de Jong <walter@heiho.net>
#
# synctool COMES WITH NO WARRANTY. synctool IS FREE SOFTWARE.
# synctool is distributed under terms described in the GNU General Public
# License.
#
'''a SyncObject is a source file + matching destination path and... | walterdejong/synctool | src/synctool/object.py | Python | gpl-2.0 | 34,800 | [
"VisIt"
] | b7c6211244482c4bd81c637c09111920b5c6fb022277c310fa85b07d7307e3eb |
# -*- coding: utf-8 -*-
# Unit tests for cache framework
# Uses whatever cache backend is set in the test settings file.
from __future__ import unicode_literals
import copy
import io
import os
import re
import shutil
import tempfile
import threading
import time
import unittest
import warnings
from django.conf import... | sgzsh269/django | tests/cache/tests.py | Python | bsd-3-clause | 87,677 | [
"Brian"
] | 011ff5c68bfc0e785e77ca29819400941a9bfb015f7098779407efa51f92f7da |
import asyncio
import logging
import re
from datetime import timedelta
from hashlib import blake2b
from inspect import cleandoc
from itertools import zip_longest
from math import floor
import discord
import pendulum
import yaml
import vaivora.db
default_tz = 'America/New_York'
regex_nonalnum = re.compile(
f'[^... | dark-nova/wings-of-vaivora | vaivora/common.py | Python | mit | 14,399 | [
"CRYSTAL"
] | 12a464af026b1951129e2e3cfe3e40fdd4fc76d85ace766a8593c63dfde2134b |
"""Module symbol-table generator"""
from compiler import ast
from compiler.consts import SC_LOCAL, SC_GLOBAL, SC_FREE, SC_CELL, SC_UNKNOWN
from compiler.misc import mangle
import types
import sys
MANGLE_LEN = 256
class Scope:
# XXX how much information do I need about each name?
def __init__(self, name, mo... | trivoldus28/pulsarch-verilog | tools/local/bas-release/bas,3.9/lib/python/lib/python2.3/compiler/symbols.py | Python | gpl-2.0 | 13,111 | [
"VisIt"
] | eb3e86c22b26531844157c01565825e6932c28f4222d2477c0551a3697be2408 |
import random
import struct
class Genome(object):
def __init__(self, inputs, outputs):
self.size = 0
self.hue = 0
self.predator = 0
self.hidden_neurons = 0
self.hidden0_weights = []
self.output_weights = []
# These are not part of the genome but used to spee... | flexo/evolutron | evolutron/genome.py | Python | mit | 5,358 | [
"NEURON"
] | e849ed42a6e09a44552ed2c256dd7725770a253a73cc2288b5f6b77447400ec6 |
#Copyright 2008 Erik Tollerud
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to i... | eteq/pymodelfit | pymodelfit/builtins.py | Python | apache-2.0 | 52,317 | [
"Gaussian",
"Mayavi"
] | eeac10574f9a9b446b738b19761999ccb7a8641e9d4a35b2ebebab94ba0f2e5c |
##############################################################################
# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-64... | tmerrick1/spack | var/spack/repos/builtin/packages/netcdf/package.py | Python | lgpl-2.1 | 10,541 | [
"NetCDF"
] | 12671ed985e62bca0c12c59eb10ab3768d6927ea6d645f32ec84ba5ff0389e7c |
"""
Common functions for tests
"""
__author__ = "Dan Gunter <dkgunter@lbl.gov>"
__date__ = "10/29/13"
# Stdlib
import json
import logging
import os
import subprocess
import sys
import tempfile
import traceback
import unittest
# Third-party
from mongomock import MongoClient
import pymongo
# Package
from pymatgen.db.q... | materialsproject/pymatgen-db | pymatgen/db/tests/common.py | Python | mit | 5,001 | [
"VASP",
"pymatgen"
] | 43e080467272c4f195f51d04a2300067518a56822a3e9743b57e17c9bf638f89 |
# -*- coding: ascii -*-
# $Id: CNCCanvas.py,v 1.7 2014/10/15 15:04:06 bnv Exp $
#
# Author: vvlachoudis@gmail.com
# Date: 24-Aug-2014
from __future__ import absolute_import
from __future__ import print_function
import math
import time
import bmath
try:
from Tkinter import *
import Tkinter
except ImportError:
... | samowitsch/bCNC | bCNC/CNCCanvas.py | Python | gpl-2.0 | 71,221 | [
"FLEUR"
] | df665b9297727a50e4491a626c22a445900bdd936ac87873fbe0abebef00416a |
#!/usr/bin/env python
import xml.dom.minidom
#import xml.dom.ext # python 2.5 and later
class VTK_XML_Serial_Unstructured:
def __init__( self ):
pass
def createDoc( self, ( posList, radii, colors, tensors ) ):
# Document and root element
doc = xml.dom.minidom.Document()
root_... | gfrd/gfrd | vtk_xml_serial_unstructured.py | Python | gpl-2.0 | 9,179 | [
"ParaView",
"VTK"
] | 103152c1dd426378c5d30058a4b59407c0c5a8501a73dc323a25a9eba496817f |
#
# build the charts used in the final report
# generally these assume the analysis has been done; the command to do this is included in the function
#
import collections
import datetime
import math
import os
import re
import numpy as np
import matplotlib as mpl
import matplotlib.pyplot as plt
import pylab
import sys
... | supernifty/mgsa | mgsa/generate_all_reports.py | Python | mit | 131,319 | [
"BWA",
"Bowtie"
] | 1160c5e20ab22a596e667b273b720f7a657fc396f31d86fe2fd367d9ccc4875b |
#!/usr/bin/env python
""" Drop DBs from the MySQL server
"""
from __future__ import print_function
from __future__ import absolute_import
from __future__ import division
from DIRAC.Core.Utilities.DIRACScript import DIRACScript as Script
Script.setUsageMessage(
"\n".join(
[
__doc__.split("\n")[... | ic-hep/DIRAC | tests/Jenkins/dirac-drop-db.py | Python | gpl-3.0 | 830 | [
"DIRAC"
] | 17570ce795a1eaf8e1b660714cb21de09d1d816bbe2d75a75404be9cb62f18de |
from __future__ import unicode_literals
from six import ensure_text
from .node import NodeVisitor, ValueNode, ListNode, BinaryExpressionNode
from .parser import atoms, precedence
atom_names = {v: "@%s" % k for (k,v) in atoms.items()}
named_escapes = {"\a", "\b", "\f", "\n", "\r", "\t", "\v"}
def escape(string, extr... | asajeffrey/servo | tests/wpt/web-platform-tests/tools/wptrunner/wptrunner/wptmanifest/serializer.py | Python | mpl-2.0 | 4,498 | [
"VisIt"
] | 2fb36e8f5d3eefaa7c353384c682168ff3715794827c8fa2c64e8caa5c6dbe4f |
# -*- coding: utf-8 -*-
"""
ORCA Open Remote Control Application
Copyright (C) 2013-2020 Carsten Thielepape
Please contact me by : http://www.orca-remote.org/
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as publi... | thica/ORCA-Remote | src/ORCA/utils/Platform/win/win_ToPath.py | Python | gpl-3.0 | 1,248 | [
"ORCA"
] | 8e3ff773114af37aab6dbc11227404b145dbc39a960b5a71e03531b522d5761c |
"""
solve the diffusion equation:
phi_t = k phi_{xx}
with a Crank-Nicolson implicit discretization
M. Zingale (2013-04-03)
"""
import numpy
from scipy import linalg
import sys
import pylab
class Grid1d:
def __init__(self, nx, ng=1, xmin=0.0, xmax=1.0):
""" grid class initialization """
... | JeffDestroyerOfWorlds/hydro_examples | diffusion/diffusion-implicit.py | Python | bsd-3-clause | 6,861 | [
"Gaussian"
] | 357549de4810a3b382e0e02199bb46e421c0b6af29b6d7ed31eaa448b65c2fd2 |
from dopamine.environments import CartPoleEnvironment, CartPoleRenderer
from dopamine.agents import ReinforceAgent, ENACAgent
from dopamine.adapters import IndexingAdapter, NormalizingAdapter, GaussianExplorer, LinearSDExplorer, StateEnhancingAdapter
from dopamine.experiments import Experiment
from dopamine.fapprox imp... | rueckstiess/dopamine | scripts/cart_enac_linear.py | Python | gpl-3.0 | 2,161 | [
"Gaussian"
] | 9229989c59c46658c02438b2a58aaf0e17526e877888d4948593cb4fbf69c630 |
#!/usr/bin/python
# Copyright (C) 2012 Sibi <sibi@psibi.in>
#
# This file is part of Neuron.
#
# Neuron is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) an... | psibi/Neuron | cnetwork.py | Python | gpl-3.0 | 2,050 | [
"NEURON"
] | 6a3bf2621d3507602950fd6d37cdbb421e0beba8bc3117094688fe69f3c47845 |
from __future__ import generators
import math
from nlmsa_utils import CoordsGroupStart,CoordsGroupEnd
# AUTHORS: zfierstadt, leec
def is_line_start(token,line):
"check whether line begins with token"
return token==line[:len(token)]
def get_ori_letterunit(start,end,seq,gapchar='-'):
"""try to determine or... | ctb/pygr | pygr/parse_blast.py | Python | bsd-3-clause | 8,401 | [
"BLAST"
] | 67dcf222426ccd6c046107679de7810027c9274222e52eaeef1660f80f1507b5 |
# This code is licensed under the New BSD License
# 2009, Alexander Artemenko <svetlyak.40wt@gmail.com>
# For other contacts, visit http://aartemenko.com
"""
This is a helper to work with MongoDB's documents.
Author: Alexander Artemenko <svetlyak.40wt@gmail.com>
"""
import types
from pymongo.dbref import DBRef
from ... | svetlyak40wt/pymongo-bongo | mongobongo/document.py | Python | bsd-3-clause | 8,579 | [
"VisIt"
] | 6cacfe9449a6cfdf7b5b523f09a5c2b8496c929b8d12702534212ecd6bfc3294 |
#!/usr/bin/python
# Copyright (c) 2006-2013 Regents of the University of Minnesota.
# For licensing terms, see the file LICENSE.
# This script sends email reminders for the landmarks experiment.
# SYNC_ME: Search: Scripts: Load pyserver.
import os
import sys
#print 'curdir: %s' % (os.curdir,) # .
#print 'abspath: %s... | lbouma/Cyclopath | scripts/daily/landmarks_experiment_email.py | Python | apache-2.0 | 4,526 | [
"VisIt"
] | 67afbf94dedd892e1da6a0831b02ae2bead1cf7c12f792a12e014f620b81462c |
# Copyright 2013 by Nate Sutton. Based on code in _Phyml.py by Eric Talevich. All rights reserved.
# This code is part of the Biopython distribution and governed by its license.
# Please see the LICENSE file that should have been included as part of this
# package.
"""Command-line wrapper for tree inference program F... | updownlife/multipleK | dependencies/biopython-1.65/build/lib.linux-x86_64-2.7/Bio/Phylo/Applications/_Fasttree.py | Python | gpl-2.0 | 26,034 | [
"Biopython"
] | c922531b2b0159cbe9387b3dfeb00e65935adc738b13f972df5e467c0849427c |
#!/usr/bin/env python
"""
DataCollectingParser subclasses ctypesparser.CtypesParser and builds Description
objects from the CtypesType objects and other information from CtypesParser.
After parsing is complete, a DescriptionCollection object can be retrieved by
calling DataCollectingParser.data().
"""
import ctypesp... | AsherBond/MondocosmOS | grass_trunk/lib/python/ctypes/ctypesgencore/parser/datacollectingparser.py | Python | agpl-3.0 | 13,074 | [
"VisIt"
] | 7b64b8b1127838c2ae3aeb4e9dd8554661eb567ade40110216e1f0ef8a413d0f |
#!/usr/local/autopkg/python
'''
Copyright (c) 2020, dataJAR Ltd. All rights reserved.
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:
* Redistributions of source code must retain the above copyright
... | autopkg/dataJAR-recipes | Adobe 2021/Adobe2021Importer.py | Python | apache-2.0 | 6,942 | [
"MOE"
] | 674f09c874ab73e8c45026cd5079e540c955471f624b45753331747fbedde195 |
import math
from taichi.lang import impl, matrix, ops
from taichi.lang.impl import expr_init, get_runtime, static
from taichi.lang.kernel_impl import func, pyfunc
from taichi.lang.matrix import Matrix, Vector
from taichi.types import f32, f64
@func
def _randn(dt):
"""
Generate a random float sampled from uni... | yuanming-hu/taichi | python/taichi/_funcs.py | Python | mit | 15,103 | [
"Gaussian"
] | d3372e901bc9833fc368f3f42125626c665b85bb14ffdc9b18485ee958b056b5 |
"""MPF plugin which uses lights to represent Game functions. Typically in an
EM machine"""
# info_lights.py
# Mission Pinball Framework
# Written by Brian Madden & Gabe Knuth
# Released under the MIT License. (See license info at the end of this file.)
# Documentation and more info at http://missionpinball.com/mpf
im... | spierepf/mpf | mpf/plugins/info_lights.py | Python | mit | 5,019 | [
"Brian"
] | fe856559a6db860b6a2202fec2677ef82621a314a2fccc11d17fc7c863aafb0a |
import copy
import mynp as np
import random as rd
class network:
# layers -list [5 10 10 5] - 5 input, 2 hidden layers (10 neurons each), 5 output
def create(self, layers):
theta=[0]
for i in range(1, len(layers)): # for each layer from the first (skip zero layer!)
theta.append(np.r... | inferrna/neurolabcl | habranet.py | Python | lgpl-3.0 | 6,156 | [
"NEURON"
] | 606a30cd98eea18d33e9414490007672184d8c4b7d294df6289183cfa5ce4134 |
# -*- coding: utf-8 -*-
# Copyright (c) 2015-2022, Exa Analytics Development Team
# Distributed under the terms of the Apache License 2.0
"""
Gaussian Editor
#######################
Base class on top of exatomic.Editor for Gaussian Editors
"""
#import pandas as pd
from exatomic import Editor
class Editor(Editor):
... | exa-analytics/exatomic | exatomic/gaussian/editor.py | Python | apache-2.0 | 645 | [
"Gaussian"
] | b74cc292135ed4a9fbd3826dde2b1ed6439888e23e9f6cf31738c8a33c8c5bef |
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2002-2007 Donald N. Allingham
# Copyright (C) 2007-2008 Brian G. Matherly
# Copyright (C) 2008 Jerome Rapinat
# Copyright (C) 2008 Benny Malengier
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the ... | beernarrd/gramps | gramps/gen/filters/rules/family/_hasnote.py | Python | gpl-2.0 | 1,759 | [
"Brian"
] | 207290c7bf48d1cacb5ba6951635c1e177abef0dcf30638c5f9f1daf2d843773 |
# -*- coding: utf-8 -*-
#
# This file is part of cclib (http://cclib.github.io), a library for parsing
# and interpreting the results of computational chemistry packages.
#
# Copyright (C) 2006-2014, the cclib development team
#
# The library is free software, distributed under the terms of
# the GNU Lesser General Pub... | ben-albrecht/cclib | cclib/parser/gaussianparser.py | Python | lgpl-2.1 | 62,097 | [
"Gaussian",
"cclib"
] | 2dae29536d6b4e4687a54dedf74ac2954762b04ad0cd08b6d7d88fa2dd31d970 |
end_string = [
"of today",
"of friendship",
"in-between",
"intertwined",
"of success",
"of fortune",
"at the sea",
"in the rain",
"in winter",
"of winter",
"in summer",
"of summer",
"of the spring",
"in the spring",
"the applause",
"of fire",
"in whisp... | d2emon/generator-pack | src/fixtures/other/haiku.py | Python | gpl-3.0 | 17,687 | [
"Firefly"
] | b4b80984201c0b4bb03f763822c81b47fe1db65f5f321cf03f345eeed5814903 |
"""
sendwithus - Python Client
For more information, visit http://www.sendwithus.com
"""
import base64
import json
import logging
import warnings
import requests
import six
from six import string_types
from .encoder import SendwithusJSONEncoder
from .exceptions import APIError, AuthenticationError, ServerError
from ... | sendwithus/sendwithus_python | sendwithus/__init__.py | Python | apache-2.0 | 22,786 | [
"VisIt"
] | 197a51f9b635b56c389d7ecfa4c20320abeb37f2f7d5a74d0779f6c9cc484eb5 |
# Copyright Iris contributors
#
# This file is part of Iris and is released under the LGPL license.
# See COPYING and COPYING.LESSER in the root of the repository for full
# licensing details.
"""
Routines for lazy data handling.
To avoid replicating implementation-dependent test and conversion code.
"""
from functo... | pp-mo/iris | lib/iris/_lazy_data.py | Python | lgpl-3.0 | 12,221 | [
"NetCDF"
] | 7dbfe59bbc5c4b5544651261a353c30d0d2ec7cdc48958273c375aaf3eb6deea |
# -*- coding: utf-8 -*-
#
# anaspecobjects.py
# ObjectModel
#
# Created by Alexander Rudy on 2011-10-12.
# Copyright 2011 Alexander Rudy. All rights reserved.
# Version 0.6.1
#
# Parent Modules
from .anaspec import AnalyticSpectrum
from .base import AnalyticMixin
# Standard Scipy Toolkits
import numpy as np
i... | alexrudy/AstroObject | AstroObject/anaspecobjects.py | Python | gpl-3.0 | 3,339 | [
"Gaussian"
] | 20b4146f1c3fb3ce31ce263aee478bf37821d822e195f2e30ada629044ddc1c3 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
###########################################################################
# #
# ESPResSo++ Python script for H-Adress Water simulation based on #
# Gromacs topology
# ... | capoe/espressopp.soap | examples/hadress/hadressWaterGromacs/water.py | Python | gpl-3.0 | 11,362 | [
"ESPResSo",
"Gromacs"
] | d93db1e5e15243200b322fa5164ccfa14f07b9b2ec550f823af684683c135bc6 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
#
# hot-backup.py: perform a "hot" backup of a Subversion repository
# and clean any old Berkeley DB logfiles after the
# backup completes, if the repository backend is
# Berkeley DB.
#
# Subversion is a tool for revision co... | netheads/server | backup_svn-hot-backup.py | Python | gpl-2.0 | 10,531 | [
"VisIt"
] | ef44a62c7951dd7e0017c89689b191acf334712dc7102574907f74f0f4f6f2d6 |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2021 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute it and/or modify
#... | ashutoshvt/psi4 | psi4/driver/qcdb/subsetgenerator.py | Python | lgpl-3.0 | 4,294 | [
"Psi4"
] | f1d6907b29becbb2cc767911c3e7ad3bbb8c9cc2af2863096e232ddfe9e8149d |
# -*- coding:utf-8 -*-
## src/chat_control.py
##
## Copyright (C) 2006 Dimitur Kirov <dkirov AT gmail.com>
## Copyright (C) 2006-2008 Yann Leboulanger <asterix AT lagaule.org>
## Jean-Marie Traissard <jim AT lapin.org>
## Nikos Kouremenos <kourem AT gmail.com>
## ... | sgala/gajim | src/chat_control.py | Python | gpl-3.0 | 93,383 | [
"VisIt"
] | e2b658d8a2bcb61fd8a3f2ecf55cb21cdc9a8f1b08d2b2247780e13add5e6991 |
#!/usr/bin/env python2.6
"""
nknguyen at soe ucsc edu
Sep 1
"""
import os, sys, re
from Bio.Blast import NCBIXML
def reformatTitle(title):
title = title.replace("_", " ")
title = title.replace(";", " ")
return title
def checkKeywords(title, keywords):
t = title.lower()
for keyword in keywords:
... | ngannguyen/immunoseq | src/parseLiteratureBlast.py | Python | mit | 4,313 | [
"BLAST"
] | 4650f6a63d55aac084f34208e780046a59842fad007a03d98b2cc4e530e2e8f6 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
CueProc main.
Copyright (c) 2006-2008 by Nyaochi
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at yo... | rinrinne/cueproc-alternative | src/cueproc.py | Python | gpl-2.0 | 24,367 | [
"VisIt"
] | fd6585a5e8b104bda060f1b4fcbc692fce82e5a269e3ead78755cad0eb11a84a |
from pylab import figure,scatter,contour,show,legend,connect
from numpy import array, append, arange, reshape, empty, exp
from shogun import Gaussian, GMM
from shogun import RealFeatures
import util
util.set_title('SMEM for 2d GMM example')
#set the parameters
max_iter=100
max_cand=5
min_cov=1e-9
max_em_iter=1000
min... | karlnapf/shogun | examples/undocumented/python/graphical/smem_2d_gmm.py | Python | bsd-3-clause | 3,765 | [
"Gaussian"
] | af7f4a06ef378d7c7be6aa34ed180656bb1148ff34450d9e3f0a16e91fa0d445 |
#!/usr/bin/env python
__author__ = 'Mike McCann,Duane Edgington,Reiko Michisaki'
__copyright__ = '2014'
__license__ = 'GPL v3'
__contact__ = 'duane at mbari.org'
__doc__ = '''
Master loader for all CANON activities in September 2014
Mike McCann and Duane Edgington
MBARI 22 September 2014
@var __date__: Date ... | stoqs/stoqs | stoqs/loaders/CANON/loadCANON_september2014.py | Python | gpl-3.0 | 14,623 | [
"NetCDF"
] | c9de4ee3405eb90de52e5047cb73f4f5dbb90b203014f7e14ee599a09077ab1b |
# -*- test-case-name: twisted.trial.test.test_runner -*-
# Copyright (c) 2001-2010 Twisted Matrix Laboratories.
# See LICENSE for details.
"""
A miscellany of code used to run Trial tests.
Maintainer: Jonathan Lange
"""
import pdb
import os, types, warnings, sys, inspect, imp
import random, doctest, time
from twis... | sorenh/cc | vendor/Twisted-10.0.0/twisted/trial/runner.py | Python | apache-2.0 | 29,205 | [
"VisIt"
] | c57c887e7f5e95661be81c94951d83903a207c516e9d35ba52d1048ff60ae838 |
##
# Copyright 2009-2016 Ghent University
#
# This file is part of EasyBuild,
# originally created by the HPC team of Ghent University (http://ugent.be/hpc/en),
# with support of Ghent University (http://ugent.be/hpc),
# the Flemish Supercomputer Centre (VSC) (https://www.vscentrum.be),
# Flemish Research Foundation (F... | ocaisa/easybuild-easyblocks | easybuild/easyblocks/n/neuron.py | Python | gpl-2.0 | 8,725 | [
"NEURON"
] | ff1ba5df6f2c42e9c338136a3a6ec964466867f78ed0816cb1e8142316935d02 |
# -*- coding:utf-8 -*-
# Copyright (c) 2015, Galaxy Authors. All Rights Reserved
# Use of this source code is governed by a BSD-style license that can be
# found in the LICENSE file.
#
# Author: wangtaize@baidu.com
# Date: 2015-04-28
import subprocess
import os
import signal
class ShellHelper(object):
@classmetho... | linyvxiang/galaxy | test/integeration/utils.py | Python | bsd-3-clause | 3,113 | [
"Galaxy"
] | b1854f96ad12fc05afabba5c039452620f99cedd3e15d7a3dd26b100e647cd96 |
# -*- coding: ascii -*-
# $Id: CNCCanvas.py,v 1.7 2014/10/15 15:04:06 bnv Exp $
#
# Author: vvlachoudis@gmail.com
# Date: 24-Aug-2014
import math
import time
import bmath
try:
from Tkinter import *
import Tkinter
except ImportError:
from tkinter import *
import tkinter as Tkinter
from CNC import Tab, CNC
im... | dguerizec/bCNC-4axis | CNCCanvas.py | Python | gpl-2.0 | 72,378 | [
"FLEUR"
] | 4be981b1264c909bbb2adffbcde4b06dd22ea67bc48d0ab8b5eb5b448df643c8 |
"""Common helper functions to run upgrade existence and scenario tests
"""
from functools import partial
from pprint import pprint
import pytest
from robozilla.decorators import pytest_skip_if_bug_open
from upgrade.helpers import settings
from upgrade_tests.helpers.existence import assert_templates
from upgrade_tests... | SatelliteQE/satellite6-upgrade | upgrade_tests/helpers/common.py | Python | gpl-3.0 | 3,895 | [
"VisIt"
] | 688378cb6b80c517051ea10d1b9e7dc002f9ad971bce07893549a71ac725879c |
#
# Copyright 2016 The BigDL Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in ... | intel-analytics/BigDL | python/chronos/test/bigdl/chronos/model/test_TCMF.py | Python | apache-2.0 | 9,567 | [
"ORCA"
] | ac1e88d8be0c27d856a376251ff3c0f0f65a439c420a5c6adfad194da672b1a2 |
import tempfile
from pele.landscape import DoubleEndedConnect
from pele import basinhopping
from pele.storage import Database
from pele.takestep import RandomDisplacement, AdaptiveStepsizeTemperature
from pele.utils.xyz import write_xyz
from pele.optimize import lbfgs_cpp
from pele.transition_states._nebdriver import ... | cjforman/pele | pele/systems/basesystem.py | Python | gpl-3.0 | 20,845 | [
"PyMOL"
] | 1fa5047cff935ae2fe0b02d6b971063f2a94e25635d1da01b2c6cc3db8f4f799 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
from __future__ import unicode_literals, division, print_function
import os.path
import collections
import numpy as np
from pymatgen.util.testing import PymatgenTest
from pymatgen.io.abinit.pseudos import *
... | aykol/pymatgen | pymatgen/io/abinit/tests/test_pseudos.py | Python | mit | 6,946 | [
"ABINIT",
"pymatgen"
] | 88554001005a8a4c45e25a5717248721cef32e924c5ee4098cd8e7219c32dbff |
import sys
from quex.engine.misc.file_in import error_msg
from quex.engine.utf8 import map_unicode_to_utf8
from quex.engine.interval_handling import NumberSet, Interval
from quex.engine.unicode_db.parser import ucs_property_db
from quex.exception import RegularExpressionException... | dkopecek/amplify | third-party/quex-0.65.2/quex/input/command_line/query.py | Python | gpl-2.0 | 13,280 | [
"VisIt"
] | a250de76bfe1236c53a76ae285f34652b17000222cb9160b33f2e556f180286d |
#!/usr/bin/python
# Wflow is Free software, see below:
#
# Copyright (c) J. Schellekens/Deltares 2005-2014
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
... | openstreams/wflow | wflow/wflow_emwaq.py | Python | gpl-3.0 | 124,305 | [
"NetCDF"
] | 8382b3de0d86e2f6e392b1f9f3c8e7f8ca9bc1676a6f67349997828a79bae0e0 |
# vim: tabstop=4 shiftwidth=4 softtabstop=4
# Copyright 2011 OpenStack LLC.
# All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License"); you may
# not use this file except in compliance with the License. You may obtain
# a copy of the License at
#
# http://www.apache.org/... | usc-isi/extra-specs | nova/tests/api/openstack/test_xmlutil.py | Python | apache-2.0 | 26,041 | [
"VisIt"
] | f42d1408844aaf7e23de279a08f56f4a88ea1cbd62fea27baa5126c13b033f38 |
"""
Tests related to the cohorting feature.
"""
from uuid import uuid4
from common.test.acceptance.fixtures.course import CourseFixture, XBlockFixtureDesc
from common.test.acceptance.pages.common.auto_auth import AutoAuthPage
from common.test.acceptance.pages.lms.courseware import CoursewarePage
from common.test.acc... | cpennington/edx-platform | common/test/acceptance/tests/discussion/test_cohorts.py | Python | agpl-3.0 | 6,010 | [
"VisIt"
] | 4c7cd954fec72f13a2b04b50bd56fa8aa7ce0f96c97ce0cbf1650fb56b557c93 |
from __future__ import unicode_literals
from __future__ import print_function
import matplotlib.pyplot as plt
# from mpi4py import MPI
import numpy as np
from scipy.signal import argrelextrema
from scipy.stats import norm
from scipy.optimize import minimize, leastsq
from sklearn.neighbors import KernelDensity
from .u... | kjohnsson/modality | modality/critical_bandwidth_fm.py | Python | mit | 15,909 | [
"Gaussian"
] | bbabcb3cc28679d84f61307e53b2b694327d93a852db9c5434340a3e4d7ed1aa |
# -*- coding: utf-8 -*-
# Part of Odoo. See LICENSE file for full copyright and licensing details.
from odoo import fields, models
class ResConfigSettings(models.TransientModel):
_inherit = 'res.config.settings'
geoloc_provider_id = fields.Many2one(
'base.geo_provider',
string='API',
... | t3dev/odoo | addons/base_geolocalize/models/res_config_settings.py | Python | gpl-3.0 | 807 | [
"VisIt"
] | 21402cbff6f86efad98b773165af3e18879c52c097fce097da00f5e6dc9b18a9 |
# -*- coding: latin-1 -*-
"""
python-nmap - 2010.12.17
python-nmap is a python library which helps in using nmap port scanner.
It allows to easilly manipulate nmap scan results and will be a perfect
tool for systems administrators who want to automatize scanning task
and reports. It also supports nmap script outputs.... | CaptFrank/wi-finder | nmap/__init__.py | Python | gpl-3.0 | 1,284 | [
"Brian"
] | 991861ebd317b0de1e1e6c62a06fb0bbb033d444d06ffaa3839c8e0ded83b753 |
# coding=utf-8
"""
audfprint_analyze.py
Class to do the analysis of wave files into hash constellations.
2014-09-20 Dan Ellis dpwe@ee.columbia.edu
"""
from __future__ import division, print_function
import os
import numpy as np
import scipy.signal
# For reading/writing hashes to file
import struct
# For glob2has... | dpwe/audfprint | audfprint_analyze.py | Python | mit | 22,767 | [
"Gaussian"
] | 46a9401e04cd31b1ffff1ce327c0dc84d852d3fb557e8195940e895d4391f9e1 |
"""Utilities for registering objects.
This module contains utility functions to register Python objects as
valid COM Servers. The RegisterServer function provides all information
necessary to allow the COM framework to respond to a request for a COM object,
construct the necessary Python object, and dispatch COM even... | sserrot/champion_relationships | venv/Lib/site-packages/win32com/server/register.py | Python | mit | 23,084 | [
"BLAST"
] | 983371565c3e384d861a8ab62191c44663c7e553e219cf21c758cbce3ad41c18 |
# 1.13. Sorting a List of Dictionaries by a Common Key
from operator import itemgetter
from pprint import pprint
rows = [
{'fname': 'Brian', 'lname': 'Jones', 'uid': 1003},
{'fname': 'David', 'lname': 'Beazley', 'uid': 1002},
{'fname': 'John', 'lname': 'Cleese', 'uid': 1001},
{'fname': 'Big', 'lname':... | chen2aaron/SnirteneCodes | PythonCookbookPractise/chapter1/sort_list.py | Python | gpl-2.0 | 1,188 | [
"Brian"
] | c666ff525484036af4739dde0eea16c7f66beab9f4fb46776a3ea492e098d07d |
# Copyright 2014-2018 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by appl... | gkc1000/pyscf | pyscf/nao/m_vertex_loop.py | Python | apache-2.0 | 3,968 | [
"PySCF"
] | 592a0e3f78f15b5b757b27cc09b8740fb630908ae2e919bf14ea2aa2aa956e06 |
# -*- coding: utf-8 -*-
# Generators for geometric graphs.
# Copyright (C) 2004-2015 by
# Aric Hagberg <hagberg@lanl.gov>
# Dan Schult <dschult@colgate.edu>
# Pieter Swart <swart@lanl.gov>
# All rights reserved.
# BSD license.
# METHODS:
# random_geometric_graph
# waxman_graph
# geographical_thresh... | IsaacLab/LaboratorioIntangible | T4/networkx.generators.geometric.py | Python | agpl-3.0 | 11,515 | [
"Gaussian"
] | 34bd83023b07c4e464ec5dca7f28d4982c47e7c8535cd9404674d385ea1c026f |
from logging import info
from logging import debug
import array
import pysam
import numpy
from scipy.stats import rankdata
import multiprocessing
import itertools
BIN = 1000 # bin size for normalization purposes.
def cal_normalization_constant(parameter):
info ("calculating normalization constants... | shawnzhangyx/PePr | PePr/pre_processing/cal_normalization.py | Python | gpl-3.0 | 17,374 | [
"pysam"
] | 6036eb7541897335c1bc7c8cdb1920e90c62802df6f5444b0a80fd08e2cd00a4 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
#
# (c) 2015, Brian Coca <bcoca@ansible.com>
# GNU General Public License v3.0+ (see COPYING or https://www.gnu.org/licenses/gpl-3.0.txt)
from __future__ import absolute_import, division, print_function
__metaclass__ = type
ANSIBLE_METADATA = {'metadata_version': '1.0',
... | bearstech/ansible | lib/ansible/modules/system/svc.py | Python | gpl-3.0 | 9,578 | [
"Brian"
] | c888c0af33faa92fc37963f1e4a101618cf45c3364e965bc8fba9bd3dac19f7e |
import pdb
import scipy as sp
import scipy.linalg
import copy
import sys
import time
from limix.core.type.observed import Observed
from limix.hcache import Cached, cached
from limix.core.covar import Covariance
from limix.core.mean import MeanBase
from limix.core.covar.cov_reml import cov_reml
import limix.core.optimiz... | PMBio/limix | limix/core/gp/gp_base.py | Python | apache-2.0 | 8,314 | [
"Gaussian"
] | 504a26a2b1d930f2e9837d81ce5550628ba741f19d2c78453f7c0992468a9a6f |
import sixtracklib as st
import cobjects
import numpy as np
from cobjects import CBuffer
def gaussian_dist(z, mu=0.0, sigma=1.0):
assert np.all(np.abs(sigma) > 0.0)
norm_z = (z - mu) / (np.sqrt(2.0) * sigma)
return 1.0 / np.sqrt(2 * np.pi * sigma) * np.exp(-norm_z * norm_z)
if __name__ == "__main__":
... | SixTrack/SixTrackLib | examples/python/spacecharge/line_density_profile.py | Python | lgpl-2.1 | 6,754 | [
"Gaussian"
] | d1a6a75551488b00f70b30a43871e8f8904637bc27fda4a66b6af5457bb2fadb |
#!/usr/bin/env python
# Copyright 2014-2018 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | sunqm/pyscf | pyscf/grad/test/test_h2o.py | Python | apache-2.0 | 5,354 | [
"PySCF"
] | 62c03a5c2248c33c76f11d833f460921d5b98df13dc2c206f161d2e07b70b882 |
#!/usr/bin/env python
# -*- encoding: utf-8 -*-
from __future__ import unicode_literals
import bindings as bi
import sys
PY3 = sys.version_info[0] == 3
str_type = str if PY3 else (str, unicode)
# ----------------------------------------------------------------------------------------------------------------------
# ... | h2oai/h2o-dev | h2o-bindings/bin/gen_R.py | Python | apache-2.0 | 60,430 | [
"Gaussian"
] | 5e091fb19fb545f73f348fc1413bbef11d719eecb90f1a07d3afb437d638aef5 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
#
# --- BEGIN_HEADER ---
#
# stopfe - [insert a few words of module description on this line]
# Copyright (C) 2003-2009 The MiG Project lead by Brian Vinter
#
# This file is part of MiG.
#
# MiG is free software: you can redistribute it and/or modify
# it under the terms of th... | heromod/migrid | mig/cgi-bin/stopfe.py | Python | gpl-2.0 | 1,100 | [
"Brian"
] | 7d222996732fb358ccc3549e85a6f8b42df031b1595c0fdb96bb6c781dc3d969 |
#!/usr/bin/env python
""" load mWGS Raw Seq Set into OSDF using info from data file """
import os
import re
from cutlass.MicrobTranscriptomicsRawSeqSet \
import MicrobTranscriptomicsRawSeqSet
import settings
from cutlass_utils import \
load_data, get_parent_node_id, list_tags, format_query, \
wri... | JAX-GM/osdf_submit | nodes/MicrobTranscriptomicsRaw.py | Python | gpl-3.0 | 6,361 | [
"VisIt"
] | a5f68790672dfdd493a6cdf251f505ed2f80f5dbb72a5437e8d28fd1b65e5f85 |
from __future__ import print_function
"""
based on:
- http://www.vtk.org/Wiki/VTK/Examples/Python/PolyData/ExtractSelectionCells
"""
import vtk
import signal
signal.signal(signal.SIGINT, signal.SIG_DFL)
def main():
"""
^y
|
8----9----10---11
| / | / | / |
4----5----6----7
| / | / | ... | saullocastro/pyNastran | pyNastran/gui/vtk_examples/extract_selection_cells_ugrid.py | Python | lgpl-3.0 | 6,450 | [
"VTK"
] | 83a2d85e6ff0ea9362873cdf1be043ec27c018d046e0ddaebe6d057b07c18fe3 |
import matplotlib.pyplot as plt
import numpy as np
import random
plt.xkcd()
# This is adapted from Andrej Karpathy's blog:
# http://karpathy.github.io/neuralnets/
# written in Python instead of JS (Obviously)
# Define out unknown function we want to maximize
def unknown_function(a, b):
return a*b
... | medav/yatml | l1-fundamentals/p2-random-search.py | Python | mit | 1,410 | [
"VisIt"
] | c715b32bc7debc4ea7d590629ecc4014443b5a3045c98fbe326b3ccfc1d24175 |
# -*- Encoding: utf-8 -*-
""" CellProfiler.CellProfilerGUI.CPFrame - Cell Profiler's main window
CellProfiler is distributed under the GNU General Public License.
See the accompanying file LICENSE for details.
Copyright (c) 2003-2009 Massachusetts Institute of Technology
Copyright (c) 2009-2015 Broad Institute
All ri... | LeeKamentsky/CellProfiler | cellprofiler/gui/cpframe.py | Python | gpl-2.0 | 88,479 | [
"VisIt"
] | 649a1c21bf07b46c59b10d680fbfdc5fe7c3fb7d9c7d05b16f15bbac7dc38654 |
##
## Biskit, a toolkit for the manipulation of macromolecular structures
## Copyright (C) 2004-2012 Raik Gruenberg & Johan Leckner
##
## This program is free software; you can redistribute it and/or
## modify it under the terms of the GNU General Public License as
## published by the Free Software Foundation; either v... | ostrokach/biskit | Biskit/PDBModel.py | Python | gpl-3.0 | 139,359 | [
"Amber"
] | 6cffb401befbd79d458d3332d6f36853d96148c0c7fd830f168e2907883f31f1 |
# -*- coding: utf-8 -*-
"""QGIS Unit tests for edit widgets.
.. note:: This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
"""
__au... | AsgerPetersen/QGIS | tests/src/python/test_qgsrelationeditwidget.py | Python | gpl-2.0 | 10,743 | [
"Galaxy"
] | d91be87ca00c7ed5c69b3a3fad7b52ea2cc535b9ef9a2f796810d68eba9a87cf |
# -*- coding: utf-8 -*-
# Copyright: (c) 2019, Ansible Project
# GNU General Public License v3.0+ (see COPYING or https://www.gnu.org/licenses/gpl-3.0.txt)
# Make coding more python3-ish
from __future__ import (absolute_import, division, print_function)
__metaclass__ = type
import copy
import json
import os
import py... | k0ste/ansible | test/units/galaxy/test_collection_install.py | Python | gpl-3.0 | 34,691 | [
"Galaxy"
] | cf862067edffe49595382ed9384caa22d9fed4de82746ef4815fda7a73490c1d |
#
# Copyright 2014 James Kermode (Warwick U.)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Founda... | libAtoms/matscipy | matscipy/fracture_mechanics/crackpathsel.py | Python | lgpl-2.1 | 2,974 | [
"Matscipy"
] | d43b50e0ca56637ac829de52ea65382f7b88e16403fa26bb39cebf0d2d83d4cc |
import numpy as np
from gpaw.mpi import world
from gpaw.blacs import BlacsGrid, Redistributor
from gpaw.utilities import compiled_with_sl
def test(comm, M, N, mcpus, ncpus, mb, nb):
grid0 = BlacsGrid(comm, 1, 1)
desc0 = grid0.new_descriptor(M, N, M, N, 0, 0)
A_mn = desc0.zeros(dtype=float)
A_mn[:] = ... | robwarm/gpaw-symm | gpaw/test/parallel/blacsdist.py | Python | gpl-3.0 | 2,047 | [
"GPAW"
] | 9605459311ba8b41bbf485be258d528d51b99bfe304bccacde71e8ad9db5ecf4 |
# Copyright 2008-2010 by Peter Cock. All rights reserved.
# Revisions copyright 2009 by Cymon J. Cox. All rights reserved.
#
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
"""Bio.SeqIO support for... | updownlife/multipleK | dependencies/biopython-1.65/build/lib.linux-x86_64-2.7/Bio/SeqIO/PhdIO.py | Python | gpl-2.0 | 6,047 | [
"Biopython"
] | 3f241ba7a712955e61dd7f8ccd113cd1df77793e89ffe0bffd0f37a644955b1d |
#!/usr/bin/python2.5
# Copyright (C) 2007 Google Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable la... | Censio/transitfeed | transitfeed/stop.py | Python | apache-2.0 | 10,449 | [
"VisIt"
] | 878271bb8800e47657ffbaf65a91d3300a31cd738abb22c8e6867ae87a3ef1a1 |
"""Compatibility fixes for older versions of libraries
If you add content to this file, please give the version of the package
at which the fix is no longer needed.
# originally copied from scikit-learn
"""
# Authors: Emmanuelle Gouillart <emmanuelle.gouillart@normalesup.org>
# Gael Varoquaux <gael.varoquau... | pravsripad/mne-python | mne/fixes.py | Python | bsd-3-clause | 37,383 | [
"Gaussian"
] | c2f3478d1b8f222bc4498daa6054e3fbc9915ed1a0a90d419675ea8773c2e752 |
# -*- coding: utf-8 -*-
"""
Created on Fri Sep 9 16:36:47 2016
@author: Felipe Leno
Loads everything from adhoc.py, this class only defines parameters for the visit-based
ad hoc advising
"""
from adhoc import AdHoc
import math
class AdHocVisit(AdHoc):
#Enum for importance metrics
VISIT_IMPORTANCE, Q_IMPOR... | cowhi/HFO | experiments/agents/adhocvisit_backup.py | Python | mit | 1,171 | [
"VisIt"
] | 74621c8ddd30a260aa9e7c28b8ebff848ab79139e9dba57602e0c25092a56215 |
import mock
import requests
from StringIO import StringIO
from boto.s3.key import Key
EXPECTED_TASK_STATUS_FAILED_RESPONSE = {
"s3_urls": {},
"src_url": "",
"state": "FAILURE",
"status": "{u'exc_message': u'fp is at EOF. Use rewind option or seek() to data start.'"
", u'exc_type': u'Att... | Callek/build-relengapi | relengapi/blueprints/archiver/test_util.py | Python | mpl-2.0 | 3,840 | [
"Brian"
] | 215126f70d3a652b636d225e45c789dd1ed94f3b3c7a097b04fafa7865e46a67 |
#!/usr/bin/env python
import math, numpy as np
#from enthought.mayavi import mlab
import matplotlib.pyplot as pp
import matplotlib.cm as cm
import matplotlib
import scipy.linalg as lin
import scipy.ndimage as ni
import roslib; roslib.load_manifest('sandbox_tapo_darpa_m3')
import rospy
import tf
#import hrl_lib.mayav... | tapomayukh/projects_in_python | sandbox_tapo/src/skin_related/Cody_Data/time_varying_data_two_objects_exploration.py | Python | mit | 16,284 | [
"Mayavi"
] | 838f83703aff81a8e5986e88c42feacb8d9b2d166d7ffb6c67b44582927ae086 |
#!/usr/bin/env python
"""
gui/localize
~~~~~~~~~~~~~~~~~~~~
Graphical user interface for localizing single molecules
:authors: Joerg Schnitzbauer, Maximilian Thomas Strauss, 2015-2019
:copyright: Copyright (c) 2015-2019 Jungmann Lab, MPI of Biochemistry
"""
import os.path
import sys
import yaml
f... | jungmannlab/picasso | picasso/gui/localize.py | Python | mit | 66,043 | [
"Gaussian"
] | 8e37748169ec827675cc16d8e0e20617721017e0a172dd6457cacfd5fd2b6b18 |
#!/usr/bin/env python
# Copyright 2014-2018 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | gkc1000/pyscf | pyscf/x2c/test/test_x2c.py | Python | apache-2.0 | 6,630 | [
"PySCF"
] | 182de8ed45d777962e70edf409266ec34214ae413b69336207ead4ec284256ce |
# Copyright 2001-2004 Brad Chapman.
# Revisions copyright 2009-2010 by Peter Cock.
# All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
"""General mechanisms to access applications i... | bryback/quickseq | genescript/Bio/Application/__init__.py | Python | mit | 25,724 | [
"BLAST",
"Biopython"
] | b29380c1c7e6884b2489f13801a1f419e62ff5a841ee7ab2a4347ae5baf6ff90 |
"""
Support the ISY-994 controllers.
For configuration details please visit the documentation for this component at
https://home-assistant.io/components/isy994/
"""
import logging
from urllib.parse import urlparse
from homeassistant import bootstrap
from homeassistant.const import (
ATTR_DISCOVERED, ATTR_SERVICE,... | sffjunkie/home-assistant | homeassistant/components/isy994.py | Python | mit | 6,873 | [
"VisIt"
] | 58ce11a184055f167a8b6e5d688dbc797bcb3ba3fa3539a124b4e0a6797b0e7f |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
import simplejson as json
import decimal
import random
from collections import namedtuple
import pytest
from marshmallow import Schema, fields, utils, MarshalResult, UnmarshalResult
from marshmallow.exceptions import ValidationError
from marshmallow.compat import Ordered... | Bachmann1234/marshmallow | tests/test_schema.py | Python | mit | 56,982 | [
"Brian"
] | c3f1b8c966efc14c04a79c1abb6f3a1cd958b3d5c2700947ee0f2bf0cb7b61cd |
import cv2
import numpy as np
import pandas as pd
import math
class VideoUtilities():
"""
Standard functions for video cleanup
"""
@staticmethod
def get_derivative(video, frame_stride=1):
"""
Take derivative of video. The derivative is calculated as:
dx/dt = Frame(n + ... | pdxcycling/carv.io | video_analysis/code/video_utilities.py | Python | mit | 11,400 | [
"Gaussian"
] | dff33fd5202f44ebedcaa70e586923442990b380854c4814c56278b5bc8823aa |
Subsets and Splits
No community queries yet
The top public SQL queries from the community will appear here once available.