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import functools
import types
import re
################# CORE #################
def this(obj):
"""Basic type converter. Convert given object to the flowp type object
with type which is consistent with flowp types.
Examples:
class SomeClass:
pass
some_obj = SomeClass()
... | localmed/flowp | flowp/ftypes.py | Python | bsd-3-clause | 7,366 | [
"VisIt"
] | 36e00fdafc08109f8c0c3b4023df8b3725b2f91f764cfdb1bee5813870deeed3 |
# -*- coding: utf-8 -*-
"""
This is a deprecated backend. :mod:`~xrt.backends.raycing` is much more
functional. Module :mod:`~xrt.backends.shadow` works with shadow input files,
starts the ray-tracing and gets its output.
Description of shadow
---------------------
... can be found in the manual pages of your shadow... | PanTomaszRoszczynialski/XRayTracer | backends/shadow.py | Python | mit | 15,965 | [
"CRYSTAL"
] | 35b16a731d57256393dce200ea0c7dec4d84705e7e01132746ce24a268210e34 |
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not u... | leezu/mxnet | python/mxnet/numpy/random.py | Python | apache-2.0 | 40,839 | [
"Gaussian"
] | 825604ba568d1313e276eb617ffbbd3ff76ce8e9a78d0828da6b2608098fa14c |
"""
Bayes Decision Boundary
-----------------------
Figure 9.1
An illustration of a decision boundary between two Gaussian distributions.
"""
# Author: Jake VanderPlas
# License: BSD
# The figure produced by this code is published in the textbook
# "Statistics, Data Mining, and Machine Learning in Astronomy" (2013... | eramirem/astroML | book_figures/chapter9/fig_bayes_DB.py | Python | bsd-2-clause | 1,907 | [
"Gaussian"
] | 517b44455b4f4cbb249be47eeb9a140f6477996bd0bffa652111d672dc622eff |
# coding=utf-8
from decimal import Decimal
from .. import BaseProvider
localized = True
class Provider(BaseProvider):
"""
land_coords data extracted from geonames.org, under the Creative Commons Attribution 3.0 License.
Coordinates are in decimal format for mapping purposes.
Country code is in Alpha... | deanishe/alfred-fakeum | src/libs/faker/providers/geo/__init__.py | Python | mit | 70,121 | [
"CRYSTAL"
] | e3876d638398fe461ffa99e6f5110e2253692b459be0f68ad5937a4358f4027b |
""" MPF plugin for a score controller which handles all scoring and bonus
tracking."""
# score_controller.py
# Mission Pinball Framework
# Written by Brian Madden & Gabe Knuth
# Released under the MIT License. (See license info at the end of this file.)
# Documentation and more info at http://missionpinball.com/mpf
i... | jabdoa2/mpf | mpf/system/scoring.py | Python | mit | 8,826 | [
"Brian"
] | 1a1f6f8b105f045e3b1ac3e579e233e3eccb105c32748fde3860b325c6b322e7 |
#
# Copyright (c) 2008--2010 Red Hat, Inc.
#
# This software is licensed to you under the GNU General Public License,
# version 2 (GPLv2). There is NO WARRANTY for this software, express or
# implied, including the implied warranties of MERCHANTABILITY or FITNESS
# FOR A PARTICULAR PURPOSE. You should have received a c... | colloquium/spacewalk | backend/server/rhnChannel.py | Python | gpl-2.0 | 68,601 | [
"VisIt"
] | f470e2b1471134b394aeb186fa20b9268b27cc6b7ade73349de345c1229a9e9d |
""" Frontend to FTS3 MySQL DB. Written using sqlalchemy
"""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
# We disable the no-member error because
# they are constructed by SQLAlchemy for all
# the objects mapped to a table.
# pylint: disable=no-member
im... | ic-hep/DIRAC | src/DIRAC/DataManagementSystem/DB/FTS3DB.py | Python | gpl-3.0 | 27,545 | [
"DIRAC"
] | c61100bb8d0627f3c638178f3ec80bad2a0352a059d72fe1446b6ad0abe5372f |
#!/usr/bin/env python
from scipy.version import version as SciPyVersion
if tuple(int(x) for x in SciPyVersion.split('.')) < (0, 9, 0):
from Scientific.IO.NetCDF import NetCDFFile as netcdf_file
else:
from scipy.io.netcdf import netcdf_file
from numpy import arange, zeros
import height
f = netcdf_file('heigh... | jjo31/ATHAM-Fluidity | tests/netcdf_read_free_surface/createnetcdf.py | Python | lgpl-2.1 | 853 | [
"NetCDF"
] | 1bcb74b6029699d5b950acc58c138eca403b5cb043d4e22439c48fb0c36d6703 |
"""
Copyright (c) 2009 John Markus Bjoerndalen <jmb@cs.uit.no>,
Brian Vinter <vinter@nbi.dk>, Rune M. Friborg <rune.m.friborg@gmail.com>.
See LICENSE.txt for licensing details (MIT License).
"""
from pycsp_import import *
import time
@process
def Prefix(cin, cout, prefixItem=None):
t = prefixItem
while... | runefriborg/pycsp | examples/Commstime_Io.py | Python | mit | 1,749 | [
"Brian"
] | ec06d75d366767c5dfdc7c31f9d9327777bd393401f69308393174884d11feb6 |
# ==================================================================================================
# Copyright 2011 Twitter, Inc.
# --------------------------------------------------------------------------------------------------
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use thi... | WCCCEDU/twitter-commons | src/python/twitter/common/contextutil/__init__.py | Python | apache-2.0 | 6,700 | [
"Brian"
] | 6dedc58004f0b09c46c63088d14066e337aa341fe6b16854fef3dede0a6746fe |
#!/usr/bin/env python
#
# Author: Qiming Sun <osirpt.sun@gmail.com>
#
'''
A simple example to run DOCI-CASCI and DOCI-CASSCF calculation.
'''
from pyscf import gto
from pyscf import doci
mol = gto.M(atom='N 0 0 0; N 0 0 2.', basis='6-31g')
mf = mol.RHF().run()
mc = doci.CASSCF(mf, 18, 14)
mc.verbose = 4
mc.kernel()
... | gkc1000/pyscf | examples/doci/00-simple_doci_casscf.py | Python | apache-2.0 | 361 | [
"PySCF"
] | 490eaa6b4bf1fec2cc863ebe0e2915264c62672ea218450466596740875c6065 |
__author__ = 'sebastians'
# PyMOL Animation Tutorials -- 04 - Animation
# This tutorial will show you how to connect the scenes and thus animate the movie.
# Import all necessary modules
import pymol
from pymol import cmd
# The custom viewpoint
closeup = '''
-0.775189936, 0.267432511, -0.572329581,\
0.... | ssalentin/pymol-animations | tutorials/basics/04-animation.py | Python | mit | 2,972 | [
"PyMOL"
] | 7fecd8a9b70a45643575a889308e55e38aefec12b50c4856427e2b93bbe8b7a8 |
#!/usr/bin/env python3
#
# Copyright (C) 2020 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your... | pkreissl/espresso | maintainer/CI/jupyter_warnings.py | Python | gpl-3.0 | 4,064 | [
"ESPResSo"
] | 957c16a8e2d1d5ae3afba1ad922bcc1603dc87079c721efefef34b4231491dbb |
#!/usr/bin/env python
# encoding: utf-8
from core.utils.string_utils.random_string import random_string
from core.utils.string_utils.list2string import list2string
from core.utils.http.build_url import build_url
from core.utils.http.get_domain import get_domain
from core.utils.hash.file import hash_file
from core.log ... | WangYihang/Webshell-Sniper | core/webshell/WebShell.py | Python | gpl-3.0 | 27,121 | [
"VisIt"
] | e7fcdd327b4588c7665c1cfbfe35acac6e44c8196291ebbfd3e55e6c8640efc2 |
# elif myclass == "Barbarian":
# #Barbarian strength build
#Human Bonus Feat) Toughness
#1) Power Attack
#3) Improved Initiative
#5) Endurance
#7) Diehard
#9) Improved Critical (main weapon)
#11) Sickening Critical
#13) Staggering Critical
#15) Blinding Critical
#17) Stunning Critical
... | laisrael/Game-Tools-NPC-Generator | saved_code_snippets/saved_featgen_code.py | Python | mit | 1,742 | [
"BLAST"
] | f6059dbc0e13a06ed16774e52fa21ec6bc3da5c02c2d5abd975a4a516f6fb07e |
"""
Utility functions for testing
"""
import atexit
import glob
import os
import random
import re
import shutil
import sys
import threading
import time
import unittest
import warnings
import tempfile as tempfile_mod
from unittest_extensions import SkipTest
import pathfix
from pygr import logger, classutil
try:
... | cjlee112/pygr | tests/testlib/testutil.py | Python | bsd-3-clause | 11,416 | [
"BLAST"
] | 09af1eb43c12efd2c0ce6085669d03ed67a506d7640622070defa0c2e6618e48 |
#!/usr/bin/env python
# _*_ coding: UTF8 _*_
"""
network.py
~~~~~~~~~~
A module to implement the stochastic gradient descent learning
algorithm for a feedforward neural network. Gradients are calculated
using backpropagation. Note that I have focused on making the code
simple, easily readable, and easily mo... | tianqichongzhen/ProgramPrac | ML/DL/ann_simple/src/network.py | Python | apache-2.0 | 9,393 | [
"Gaussian",
"NEURON"
] | cd2c0c1df4d11a4d317ba56ef9264eb66a3557ccbf49152a8d4a28c46fa76a3b |
# -*- coding: utf-8 -*-
from south.utils import datetime_utils as datetime
from south.db import db
from south.v2 import SchemaMigration
from django.db import models
class Migration(SchemaMigration):
def forwards(self, orm):
# Adding model 'DisplayLabel'
db.create_table(u'survey_displaylabel', (
... | myvoice-nigeria/myvoice | myvoice/survey/migrations/0009_auto__add_displaylabel__add_field_surveyquestion_display_label.py | Python | bsd-2-clause | 13,056 | [
"VisIt"
] | b2813a36113e2675d6be640ba1b917e3e748b1aa6bf77f80abc1847e255816ff |
"""Install next gen sequencing analysis tools not currently packaged.
"""
import os
import re
from fabric.api import *
from fabric.contrib.files import *
import yaml
from shared import (_if_not_installed, _make_tmp_dir,
_get_install, _get_install_local, _make_copy, _configure_make,
... | kdaily/cloudbiolinux | cloudbio/custom/bio_nextgen.py | Python | mit | 33,357 | [
"Bowtie"
] | 316a5ec6f95ca674a52d96aa55705366592206839bd377c5e2af1bea91763a8a |
from setuptools import setup
readme = open('./README.rst').read()
classifiers = [
"License :: OSI Approved :: MIT License",
"Programming Language :: Python :: 2",
"Programming Language :: Python :: 3",
"Topic :: Software Development :: Libraries",
"Topic :: Security :: Cryptography"
]
url = 'http... | deginner/bitjws | setup.py | Python | mit | 1,078 | [
"VisIt"
] | d32ba0d76f9145a5188c3da6a9ba676f469f5ca61b4211aa62eb92cb51d79234 |
# ----------------------------------------------------------------------------
# Copyright (c) 2013--, scikit-bio development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file COPYING.txt, distributed with this software.
# --------------------------------------------... | Achuth17/scikit-bio | skbio/sequence/_rna.py | Python | bsd-3-clause | 3,889 | [
"scikit-bio"
] | 992f2d2b4648f55c43e2133fe15c3902ea24af4ccae02b2212b31b186212240c |
# This file is part of the Minecraft Overviewer.
#
# Minecraft Overviewer is free software: you can redistribute it and/or
# modify it under the terms of the GNU General Public License as published
# by the Free Software Foundation, either version 3 of the License, or (at
# your option) any later version... | Rycieos/Minecraft-Overviewer | overviewer_core/textures.py | Python | gpl-3.0 | 197,614 | [
"CRYSTAL"
] | d1f782b69d6adc33ae61abe78019e596cb181e7478951d103c7b05b914dd520e |
#!/usr/bin/env python
"""
DragonPy - Dragon 32 emulator in Python
=======================================
http://www.6809.org.uk/dragon/hardware.shtml#sam
$ffc0-ffdf SAM (Synchronous Address Multiplexer) register bits - use
even address to clear, odd address to set
$ffc0-... | jedie/DragonPy | dragonpy/Dragon32/MC6883_SAM.py | Python | gpl-3.0 | 8,435 | [
"FEFF"
] | fe8513ecc9bdd75f9749120b5a1dedf4f2fc16c18219fd4aef1a6dbe4fff7a37 |
#!/usr/bin/env python3
#
# Copyright (C) 2018 INRA
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is... | geraldinepascal/FROGS | tools/phyloseq_import/phyloseq_import_data.py | Python | gpl-3.0 | 10,956 | [
"BLAST"
] | 0855f5251bca5719c9d13191cb4d009405d46a40e66777a045622509cf62012f |
from django.utils.translation import ugettext_lazy as _
from crystal_dashboard.dashboards.crystal import dashboard
import horizon
class Policies(horizon.Panel):
name = _("Policies")
slug = "policies"
dashboard.CrystalController.register(Policies)
| Crystal-SDS/dashboard | crystal_dashboard/dashboards/crystal/policies/panel.py | Python | gpl-3.0 | 259 | [
"CRYSTAL"
] | 2e91e33e49b1695272f31c6d78953fbed989274584f335261e51bb6f980577c4 |
#!/usr/bin/env python
import sys, re, time
import getopt, os, urllib, subprocess as sub
import urllib2
import json
import nltk
import pprint
from weathercom import get_weathercom
from tree import traverse
from google_api import get_google_asr
from tts import tts
# city? idk wut is this whole dame things. lol
lo = ""... | linnnh/Tenkiba | one.py | Python | mit | 13,688 | [
"VisIt"
] | 18c38e6cb3cdf10dcc48dcaad9d1b581fd6941bb7ef51e71521c8aade3bdf4e3 |
import scipy.signal
hdfshell_findname=''
hdfshell_findlist = []
hdfshell_searchattr=False
hdfshell_searchpath = ''
hdfshell_getvals=False
#callback for visit in groups.called each time a group/dataset is vidited. for finding.
#creates a list of found things. also looks at attributes.
def hdfshell_find(name):
... | argonnexraydetector/RoachFirmPy | Roach2DevelopmentTree/pyfiles/resView.py | Python | gpl-2.0 | 51,075 | [
"VisIt"
] | 5f7994d3749a556ae9496cfd61ace70857c4211266e503344662b1a9eee9c570 |
# -*- coding: utf-8 -*-
#
# lin_rate_ipn_network.py
#
# This file is part of NEST.
#
# Copyright (C) 2004 The NEST Initiative
#
# NEST is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 2 of the Li... | lekshmideepu/nest-simulator | pynest/examples/lin_rate_ipn_network.py | Python | gpl-2.0 | 5,702 | [
"NEURON"
] | 6c2543c836e5e3d955ad2c10c6a01c6ea00efcd335b8cc69d67127e844272015 |
#!/usr/bin/env python
"""random_assignment_of_nucleotides.py - Random assignment of nucleotides for non-typical characters in the sequence alignment (arg --alignfn or fasta file with sequneces (arg --seqfn)
::
R = G A (purine)
Y = U C (pyrimidine)
K = G U (keto)
M = A C (amino)
S = G C (strong bon... | mmagnus/rna-pdb-tools | rna_tools/tools/rna_alignment/random_assignment_of_nucleotides.py | Python | gpl-3.0 | 10,159 | [
"Biopython"
] | f5bc654af7d96399775ac516ab6f01a9751369b276ddac29cd020b0025747d9b |
import unittest
import time
import logging
import sys
import os
import mock
from DIRAC.Resources.MessageQueue.MQCommunication import createProducer
import DIRAC.Resources.MessageQueue.MQCommunication as MQComm
from DIRAC.Resources.MessageQueue.StompMQConnector import StompMQConnector as MyStompConnector
from DIRAC impo... | fstagni/DIRAC | tests/Integration/Resources/MessageQueue/Test_ActiveClose.py | Python | gpl-3.0 | 9,652 | [
"DIRAC"
] | 6d131f1b49c8baa252faa54d8e230d3c7cc94264822dd60df48c04ba84351756 |
__author__ = 'jchugh'
import uuid
import time
from requests.models import Response
import requests
import copy
import oauth_utils
from simple_oauth.oauth_request import Request
from oauth_token import Token
"""
A library to help with oAuth1 requests
"""
class Oauth(object):
"""
oAuth1 provides easy to use en... | joychugh/learning-kafka | simple_oauth/oauth.py | Python | mit | 10,790 | [
"VisIt"
] | 416465cfa1c3d1591bfaa4618847a365085ddf34ea8b69faf280b99ed37cc823 |
#!/usr/bin/env python
########################################################################
#
# (C) 2013, James Cammarata <jcammarata@ansible.com>
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published ... | tjanez/ansible | lib/ansible/galaxy/api.py | Python | gpl-3.0 | 11,035 | [
"Galaxy"
] | f90e24b8966dd2055313b7a930407f365ac944b5276d3e6776025436706b5bde |
#!/usr/bin/env python
#
# Electrum - lightweight Bitcoin client
# Copyright (C) 2011 thomasv@gitorious
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at... | bitxbay/BitXBay | lib/mnemonic.py | Python | gpl-3.0 | 17,283 | [
"CRYSTAL",
"VisIt"
] | 78a0c12ce7bb5f256d1678b20e492a3baf13994ede252c56d5ee63441d2f3b28 |
# -*- coding: utf-8 -*-
from __future__ import unicode_literals
from django.db import models, migrations
from pyaxiom.netcdf import EnhancedDataset, EnhancedMFDataset
def forward(apps, schema_editor):
Layer = apps.get_model('wms', 'Layer')
Dataset = apps.get_model('wms', 'Dataset')
for d in Dataset.obj... | brianmckenna/sci-wms | wms/migrations/0028_auto_20150710_1637.py | Python | gpl-3.0 | 1,589 | [
"NetCDF"
] | 11bc645fe566e754993669f0821af2f059e3187d231d56969c4cfbc63603f1f1 |
# -*- coding: utf-8 -*-
#
# brunel_siegert_nest.py
#
# This file is part of NEST.
#
# Copyright (C) 2004 The NEST Initiative
#
# NEST is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 2 of the Lic... | tobikausk/nest-simulator | pynest/examples/brunel_siegert_nest.py | Python | gpl-2.0 | 7,181 | [
"NEURON"
] | 1a00d53933eda5d8b046cb166795083688d21a1b635e2c1c9d6c16495e67a1ff |
# Copyright 2013-2017, Brian May
#
# This file is part of python-alogger.
#
# python-alogger is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later ver... | Karaage-Cluster/python-alogger | alogger/base.py | Python | gpl-3.0 | 2,249 | [
"Brian"
] | 1f24a38c28dc96e557b40c5141b5b8705988d22642d64032f022bff67f7c525b |
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
#
# fredpy documentation build configuration file, created by
# sphinx-quickstart on Wed Apr 19 09:16:19 2017.
#
# This file is execfile()d with the current directory set to its
# containing dir.
#
# Note that not all possible configuration values are present in this
# aut... | letsgoexploring/fredpy-package | docs/source/conf.py | Python | mit | 5,957 | [
"Brian"
] | b397fa59bbae4a2cf4ad1ba6fd4ce574d13a82ba9236810cd94ece3bfc5a01bd |
# encoding: utf-8
"""colors.py - select how to color the atoms in the GUI."""
import gtk
from gettext import gettext as _
from ase.gui.widgets import pack, cancel_apply_ok, oops, help
import ase
from ase.data.colors import jmol_colors
import numpy as np
import colorsys
named_colors = ('Green', 'Yellow', 'Blue', 'Red... | JConwayAWT/PGSS14CC | lib/python/multimetallics/ase/gui/colors.py | Python | gpl-2.0 | 25,098 | [
"ASE",
"Jmol"
] | fd0831f589fed9d6061ca09d16b0c0e40a8d61e950b13ed798ce71be41213f31 |
"""Tests for reporting.views."""
# pylint: disable=invalid-name
from django.conf import settings
from django.contrib.auth import get_user_model
from django.core.urlresolvers import reverse
from django.test import Client
from django.test.utils import override_settings
from model_mommy import mommy
from tablib import imp... | lpatmo/actionify_the_news | open_connect/reporting/tests/test_views.py | Python | mit | 6,185 | [
"VisIt"
] | fc5c82ba7c7cb4b91d74ba830f2cd83930555bdb8239771c15975c372dc0eafe |
import subprocess as sp
tests = [
{'call': [
'htseq-count',
'-m', 'intersection-nonempty',
'--nonunique', 'none',
'--secondary-alignments', 'score',
'--supplementary-alignments', 'score',
'example_data/yeast_RNASeq_excerpt_withNH.sam',
'example_data/Saccharom... | simon-anders/htseq | python2/test/test_htseq-count.py | Python | gpl-3.0 | 2,889 | [
"HTSeq"
] | 7dcc65f08880d74cec74e3c9db05c2ed16349fa845cc9aad606ec2d8b1c13696 |
#!/usr/local/bin/python
# rfc1751.py : Converts between 128-bit strings and a human-readable
# sequence of words, as defined in RFC1751: "A Convention for
# Human-Readable 128-bit Keys", by Daniel L. McDonald.
#
# Part of the Python Cryptography Toolkit
#
# Written by Andrew M. Kuchling and others
#
# =================... | cipicip/appengine | test_crypto/Crypto/Util/RFC1751.py | Python | apache-2.0 | 21,136 | [
"Elk",
"MOE"
] | 016cf07475fc1d6b807d01b0e2f418fe40e750616034c5318d5639d276282376 |
from __future__ import absolute_import, division, print_function
import types
from numbers import Number
from typing import List, Tuple, Union, Sequence, Optional
import numpy as np
import tensorflow as tf
from sklearn.mixture import GaussianMixture
from sklearn.preprocessing import KBinsDiscretizer
from tensorflow i... | imito/odin | odin/bay/vi/utils.py | Python | mit | 13,483 | [
"Gaussian"
] | d511fb48cacb1ba622b081122160b02c968a2e6eae3ef066f6242583c93bbdbc |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
Unit tests for TEM calculator.
"""
import unittest
from pymatgen.core.lattice import Lattice
from pymatgen.core.structure import Structure
from pymatgen.analysis.diffraction.tem import TEMCalculator
from p... | mbkumar/pymatgen | pymatgen/analysis/diffraction/tests/test_tem.py | Python | mit | 11,775 | [
"pymatgen"
] | 51d68b9fa65b86f756e147cf5cc15e813bee59dc61880fbb7b28fecc3d345410 |
# -*- coding: utf-8 -*-
from __future__ import absolute_import, print_function
import sys, os
import hashlib
import base64
from datetime import datetime, timedelta
import requests
from requests.exceptions import ConnectionError
from github import Github, UnknownObjectException, GithubException
import click
from jinja2... | mattfleaydaly/newstatuslive | statuspage/statuspage.py | Python | mit | 16,868 | [
"VisIt"
] | 6f191d2e5d9b382ed14bd53a56257b21e813becbdf86bd0403a78f71d3330d18 |
try: paraview.simple
except: from paraview.simple import *
import numpy as np
from mpi4py import MPI
import os
import csv
from scipy import interpolate
comm = MPI.COMM_WORLD
label = 'm_50_7'
label = label+'_2Db_particles'
basename = 'mli_checkpoint'
dayi = 0
dayf = 50
days = 1
time = range(dayi,dayf,days)
## REA... | jungla/ICOM-fluidity-toolbox | Detectors/slice_simple.py | Python | gpl-2.0 | 3,120 | [
"ParaView"
] | 910887eeb6cbeb7f858e5b89d5185ccde347fb0a998ad770a54ef11990b5a7c0 |
__all__ = [
'OMFReader',
]
import omf
import omfvista
import vtk
from .. import _helpers
from ..base import ReaderBaseBase
class OMFReader(ReaderBaseBase):
"""Handles reading an OMF Project"""
__displayname__ = 'OMF Project Reader'
__category__ = 'reader'
extensions = 'omf'
description = 'P... | banesullivan/ParaViewGeophysics | PVGeo/gmggroup/reader.py | Python | bsd-3-clause | 3,555 | [
"VTK"
] | e816352f61a0a3afdb6005e8e3fc7b5282e4a79813c79be3c7e76415219a6ad1 |
# Copyright 2009-2012 Ram Rachum.
# This program is distributed under the MIT license.
'''
This module defines CamelCase-selecting scripts.
See their documentation for more information.
'''
from __future__ import with_statement
import re
import _ast
import os.path, sys
sys.path += [
os.path.dirname(__file__), ... | cool-RR/cute-wing-stuff | scripts/selecting_camelcase.py | Python | mit | 3,224 | [
"VisIt"
] | 94490fde1163a1fadeb8da74244f53f3411c63babefbf2e7db5cc535970d302f |
# -*- Mode: python; tab-width: 4; indent-tabs-mode:nil; coding:utf-8 -*-
# vim: tabstop=4 expandtab shiftwidth=4 softtabstop=4
#
# MDAnalysis --- https://www.mdanalysis.org
# Copyright (c) 2006-2017 The MDAnalysis Development Team and contributors
# (see the file AUTHORS for the full list of names)
#
# Released under t... | MDAnalysis/mdanalysis | package/MDAnalysis/coordinates/core.py | Python | gpl-2.0 | 4,245 | [
"MDAnalysis"
] | ef2717333933004b6fa53c4c5936e2620febca6b1070d4f7618a587774824e9a |
# slicer imports
from __main__ import vtk, slicer
# python includes
import sys
import time
class Helper( object ):
'''
classdocs
'''
@staticmethod
def Info( message ):
'''
'''
print "[CMRToolkitPy " + time.strftime( "%m/%d/%Y %H:%M:%S" ) + "]: " + str( message )
sys.stdout.flush()
... | carma-center/carma_slicer_extension | LASegmentationWorkflow/LASegmentationResources/Helper.py | Python | bsd-2-clause | 3,485 | [
"VTK"
] | 942b427db924e6f47c35ba90f0368719eff8fd2be49fed94e90dff9c8ccaa194 |
# takes cleaned ClickStreamData.csv file and turns it into a transaction file
from datetime import datetime as DT
import re
fi = open("ClickStreamData.csv", "r")
fo = open("TransactionData.csv", "w")
FMT = "%d-%m-%Y %H:%M"
header = ["BOOK", "MOVIE", "VGAME", "ELEC", "COMP", "H&G", "HANDBG", "CLOTH", "SHOE", "OUTDRS",... | kylekanos/AffinityAnalysis | transactions.py | Python | mit | 2,681 | [
"VisIt"
] | eeba2388646f44c8dc6125412b9ac64bf82d204f37bd4ed801d9de2fbbb2cb5f |
#!/usr/local/bin/python
# Translated from walkCow.tcl
import vtk
def walk_cow(file_name, figure):
figure = abs(figure)
if figure > 2:
figure = 0
colors = vtk.vtkNamedColors()
# Set the background color.
colors.SetColor("BkgColor1", [60, 93, 144, 255])
colors.SetColor("BkgColor2", [2... | lorensen/VTKExamples | src/Python/Rendering/WalkCow.py | Python | apache-2.0 | 12,890 | [
"VTK"
] | c72b2b433617ab8bef7794d5eeb9d58d6db6c443d78bfa5f5a61d61ebbcb2ee2 |
# pylint: disable=missing-docstring
# pylint: disable=redefined-outer-name
from lettuce import world, step
from nose.tools import assert_true, assert_equal # pylint: disable=no-name-in-module
from selenium.common.exceptions import StaleElementReferenceException
############### ACTIONS ####################
@step('I ... | ahmadiga/min_edx | cms/djangoapps/contentstore/features/checklists.py | Python | agpl-3.0 | 4,762 | [
"VisIt"
] | f5831d791a05b9f4b0aa97d40562e75ac94e0a4d0f07d156d90feba050d2c673 |
# -*- coding: utf-8 -*-
#
# Copyright (c) 2010-2011, Monash e-Research Centre
# (Monash University, Australia)
# Copyright (c) 2010-2011, VeRSI Consortium
# (Victorian eResearch Strategic Initiative, Australia)
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modificatio... | iiman/mytardis | tardis/tardis_portal/metsparser.py | Python | bsd-3-clause | 36,465 | [
"VisIt"
] | 9759839c860e06388597c1bf9ae7d042145b20fd65c6fb6c3dbf9868437bbdfb |
from sklearn.covariance import EllipticEnvelope
import sklearn.neighbors
from sklearn.svm import OneClassSVM
import os
from msmbuilder import example_datasets, cluster, msm, featurizer, lumping, utils, dataset, decomposition
sysname = os.path.split(os.getcwd())[-1]
dt = 0.25
tica_lagtime = 400
regularization_string = ... | hainm/MSMs | code/sandbox/tica_kde_svm.py | Python | gpl-2.0 | 2,319 | [
"MDTraj"
] | 5eb182d376d336bdf16dc57a2497765d898b50e5b5073353b3116b8cdda2c126 |
from __future__ import print_function, absolute_import
import subprocess
from Bio.Blast import NCBIXML
import numpy
import cryptosite.config
def run_blast(pdb):
'''
Run blast of a given sequence
'''
cmd = ["blastp", "-query", "test.seq", "-db", cryptosite.config.uniprot,
"-evalue", "0.0000... | salilab/cryptosite | lib/cryptosite/seq_conservation.py | Python | lgpl-2.1 | 4,350 | [
"BLAST"
] | 8fc27de6ff80268427575d8fe5be1302219631c982a01640709220e3626d5c5b |
"""
.. _tut_compute_covariance:
Computing covariance matrix
===========================
"""
import os.path as op
import mne
from mne.datasets import sample
###############################################################################
# Source estimation method such as MNE require a noise estimations from the
# rec... | jniediek/mne-python | tutorials/plot_compute_covariance.py | Python | bsd-3-clause | 6,805 | [
"Gaussian"
] | 0a4214231c05058ad9a4c18c6b38d2ab6975444be9b394fcae549ff52781da2f |
"""Notebook related utilities
Authors:
* Brian Granger
"""
#-----------------------------------------------------------------------------
# Copyright (C) 2011 The IPython Development Team
#
# Distributed under the terms of the BSD License. The full license is in
# the file COPYING, distributed as part of this s... | WillisXChen/django-oscar | oscar/lib/python2.7/site-packages/IPython/html/utils.py | Python | bsd-3-clause | 4,145 | [
"Brian"
] | 29f1fbb3243236dd9a63624aeb27fa8a223cc51efdef01d4b8e203fed03aa28a |
#!/usr/bin/env ipython
from pylab import *
import numpy as np
import console_colors as ccl
from scipy.io.netcdf import netcdf_file
import os
import matplotlib.patches as patches
import matplotlib.transforms as transforms
class gral:
def __init__(self):
self.name='name'
#+++++++++++++++++++++++++++++++++++... | jimsrc/seatos | mixed/figs/sheaths.paper/src/gg2.py | Python | mit | 6,501 | [
"NetCDF"
] | a7297a4e130c0099cdc1abf0eefe5dec38ab3af442224aef1448a4f59d2ed1d1 |
from freki.serialize import FrekiDoc, FrekiBlock, FrekiLine
import codecs
import re
import chardet
import logging
import argparse
def run(args):
frek = read_and_convert(args.infile, args.igtfile, args.encoding, args.detect)
out = open(args.outfile, 'w', encoding='utf8')
out.write(str(frek))
def convert_... | xigt/freki | freki/text2freki.py | Python | mit | 6,059 | [
"VisIt"
] | 0cb865e5bb4397f0d852342dc4e5d43811d6054c39a479942e8d2dddd8e69cad |
from __future__ import (absolute_import, division, print_function)
import math
import numpy as np
from scipy import constants
# Parameters in this bloc shouldn't be changed by a user. They should be treated as constants.
# Changing these parameters may lead to non-functional Abins.
# power expansion in terms of FUNDA... | wdzhou/mantid | scripts/AbinsModules/AbinsConstants.py | Python | gpl-3.0 | 6,826 | [
"CASTEP",
"CRYSTAL",
"Gaussian"
] | 89668eed66f6508706d766292e03e40919b1176225112768ffa4a0723af3a498 |
#
# Copyright (C) 2013-2019 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later... | psci2195/espresso-ffans | testsuite/python/electrostaticInteractions.py | Python | gpl-3.0 | 6,868 | [
"ESPResSo"
] | 82d3f30c10f02a1add32e2c51d12971dd0d1535f1b4ea4cec51803c4ecfdacc1 |
#!/usr/bin/env python
__description__ = \
"""
A set of objects and functions for blasting sequences against local and
remote servers. Also functions for filtering sequences. Uses Biopython. It
also requires ncbi's blast+ tools and cdhit to be installed and visible in
the path.
"""
__author__ = "Michael J. Harms"
... | harmsm/phylo_tools | blastTools.py | Python | unlicense | 23,000 | [
"BLAST",
"Biopython",
"VisIt"
] | 020a4e1c564ab076adf650ae776522dbe2c107756593986664bce43d2537bf39 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
#
# --- BEGIN_HEADER ---
#
# spell - [insert a few words of module description on this line]
# Copyright (C) 2003-2009 The MiG Project lead by Brian Vinter
#
# This file is part of MiG.
#
# MiG is free software: you can redistribute it and/or modify
# it under the terms of the... | heromod/migrid | mig/cgi-bin/spell.py | Python | gpl-2.0 | 1,098 | [
"Brian"
] | 247801e0ef84fbe6c0a992e8bb66396cd64df31cab7633e4aea514849c9cd0bb |
from django.db import models
from django.contrib.auth.models import User
from VetApp.translate import g_count_type_list
import VetApp
from datetime import datetime
__all__ = ['Vet', 'PostOffice', 'Animal', 'Operation', 'VisitAnimal', 'Visit',
'VisitItems', 'Owner', 'Bill', 'Color', 'Sex', 'Specie', 'Race',
'Item', 'It... | mape90/VetAppDjango | VetApp/models.py | Python | mit | 8,337 | [
"VisIt"
] | 71001d77c4417f149121711c3c0d70c12b3bf1f7e7216e78c4287ee878ef47df |
# -*- encoding: utf-8 -*-
#
# Copyright (c) 2013-2014, OVH SAS.
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
#
# * Redistributions of source code must retain the above copyright
# notice, t... | NicolasLM/python-ovh | ovh/client.py | Python | bsd-3-clause | 16,077 | [
"VisIt"
] | 2380cae06a9e8a117532418fb8545e87151f9ff18b72b2fcd0432d3659ca44f7 |
#!/usr/bin/env python
#
# This driver code reads a DS3231 based Real Time Clock (RTC) chip.
# The DS3231 is a clock chip with a buildin crystal, which simplifies the design
# of an RTC and makes it more accurate (Accuracy +/-2ppm from 0C to +40C)
# See the datasheet.
#
# To see if the DS3231 is available on the bus exe... | mholtrop/Phys605 | Python/DevLib/DS3231.py | Python | gpl-3.0 | 9,985 | [
"CRYSTAL"
] | a95fb0fd35aa19bc43316cdd5dec76c4b4e1c528974bb06dea98b539efd731f4 |
# -*- coding: utf-8 -*-
#
# Copyright (c) 2016, the cclib development team
#
# This file is part of cclib (http://cclib.github.io) and is distributed under
# the terms of the BSD 3-Clause License.
"""Generic output file parser and related tools"""
import bz2
import fileinput
import gzip
import inspect
import io
impor... | Schamnad/cclib | src/cclib/parser/logfileparser.py | Python | bsd-3-clause | 18,118 | [
"ADF",
"Avogadro",
"Dalton",
"GAMESS",
"Gaussian",
"Jaguar",
"MOPAC",
"Molpro",
"NWChem",
"ORCA",
"Q-Chem",
"cclib"
] | f237bee7ad5942fdde6210e7294c0a8bf01264f2499c4f021a831e99cf9c19bf |
# This file is pulled direclty from multi-mechanize
# https://github.com/cgoldberg/multi-mechanize
#!/usr/bin/env python
#
# Copyright (c) 2010 Brian Knox (taotetek@gmail.com)
# License: GNU LGPLv3
#
# This file is part of Multi-Mechanize
#
"""a collection of functions and classes for multi-mechanize results files... | puttarajubr/commcare-hq | corehq/apps/hqadmin/multimech.py | Python | bsd-3-clause | 7,233 | [
"Brian"
] | 39dd883d384f477bb057a7b2cfb0aa9411799dcac69b89abf5ff4fb83b4bd90d |
"""
18 Nov 2014
"""
from __future__ import print_function
from warnings import warn, catch_warnings, simplefilter
from collections import OrderedDict
from pysam import AlignmentFile
from scipy.stats import norm as sc_norm, skew, kurtosis
fro... | 3DGenomes/tadbit | _pytadbit/mapping/analyze.py | Python | gpl-3.0 | 69,182 | [
"pysam"
] | 29c7552155c9898c7eb08d913ddce62c6bd3cee48a414c279f42f43210e24415 |
"""
Views related to the Custom Courses feature.
"""
import csv
import datetime
import functools
import json
import logging
import pytz
from contextlib import contextmanager
from copy import deepcopy
from cStringIO import StringIO
from django.conf import settings
from django.core.urlresolvers import reverse
from djan... | mcgachey/edx-platform | lms/djangoapps/ccx/views.py | Python | agpl-3.0 | 22,731 | [
"VisIt"
] | 32645576cde7e1bd2a599c128c2e66516b5fe139a525ada015df47c4a7780659 |
# -*- coding: utf-8 -*-
"""Benchmarks."""
from time import time
import numpy as np
from pykrige.ok import OrdinaryKriging
np.random.seed(19999)
VARIOGRAM_MODELS = ["power", "gaussian", "spherical", "exponential", "linear"]
BACKENDS = ["vectorized", "loop", "C"]
N_MOVING_WINDOW = [None, 10, 50, 100]
def make_benchar... | bsmurphy/PyKrige | benchmarks/kriging_benchmarks.py | Python | bsd-3-clause | 3,471 | [
"Gaussian"
] | 1a4eaa511077e2a6910a93fedd79a45b685caebde7ffe93e4a432e06ac68c284 |
from django.shortcuts import render
from django.contrib import messages
from django.views.generic import ListView, DetailView
from django.views.generic import CreateView, UpdateView
# from django.shortcuts import render
# from django.shortcuts import get_object_or_404
# from django.shortcuts import get_list_or_404
# fr... | robjordan/unesco_project | unesco/visits/views.py | Python | apache-2.0 | 1,634 | [
"VisIt"
] | 141085ac5d760fc9862dc80d19fd2b30a374159fa6a8990aa674b3a771717b58 |
import os
import unittest
import pysal
import numpy as np
class TestDistanceWeights(unittest.TestCase):
def setUp(self):
np.random.seed(1234)
self.polyShp = pysal.examples.get_path('columbus.shp')
self.arcShp = pysal.examples.get_path('stl_hom.shp')
self.points = [(
10,... | chhao91/pysal | pysal/weights/tests/test_Distance.py | Python | bsd-3-clause | 6,542 | [
"COLUMBUS",
"Gaussian"
] | bbd390486193c83aaa1ef6de5e4f74cf87a422bb0b59b99b3c4f329d1cfc19a5 |
__author__ = 'AT'
import logging
from data_source import DataSource
from data_transformation import IdentityTransformation
from model_learn import ModelLearn
from plot_results import PlotOutput
from savigp_diag import SAVIGP_Diag
from savigp_single_comp import SAVIGP_SingleComponent
from copy import deepcopy
import GP... | adezfouli/savigp | GP/savigp_test.py | Python | apache-2.0 | 10,059 | [
"Gaussian"
] | f67e1139f0fbd585fd28061ddc17704a5764ceb689889babfdf12be88c14b8a8 |
from electrum_ltc.i18n import _
fullname = _('Revealer Backup Utility')
description = ''.join(["<br/>",
"<b>"+_("Do you have something to hide ?")+"</b>", '<br/>', '<br/>',
_("This plug-in allows you to create a visually encrypted backup of your wallet seeds, or of custom alphanumeric secrets."), '<br/>', '<br... | vialectrum/vialectrum | electrum_ltc/plugins/revealer/__init__.py | Python | mit | 473 | [
"VisIt"
] | 86406b840b144bd2f3aef1a37fc6e3b065702cf763bb9244e273c59a844dc31e |
import ast
import logging
from . import AstChecker
l = logging.getLogger(__name__)
def _is_derived_from_listener(node):
interesting = ("EventListener",)
for base in node.bases:
if isinstance(base, ast.Attribute):
# something of the form module_name.BaseClassName
if isinstance... | packagecontrol/package_reviewer | st_package_reviewer/check/file/ast/check_initialized_api.py | Python | mit | 3,398 | [
"VisIt"
] | 6ea747ac0ea556fa54d6ac1b028ab928b11c093d5f745a6a2157b2761f08b97e |
# -*- coding: utf-8 -*-
#
# Copyright © 2012 Pierre Raybaut
# Licensed under the terms of the MIT License
# (see winpython/__init__.py for details)
"""
WinPython Package Manager
Created on Fri Aug 03 14:32:26 2012
"""
# pypy3 to patch from 'python' to 'pypy3': 379 493 497 627 692 696 743 767 785
from __fu... | stonebig/winpython | winpython/wppm.py | Python | mit | 32,079 | [
"VTK"
] | 81f99bba7ad081f4fc4b2f02ab853b68f33a6aceea886412758c5cdb2e091a8b |
# -*- coding: utf-8 -*-
# Generated by Django 1.11.12 on 2018-06-05 05:20
from __future__ import unicode_literals
from django.db import migrations, models
import django.db.models.deletion
import django.utils.timezone
class Migration(migrations.Migration):
dependencies = [
('rte', '0002_auto_20180601_045... | sauli6692/ibc-server | rte/migrations/0003_auto_20180605_0520.py | Python | mit | 4,243 | [
"VisIt"
] | 4a1c9891ed9645ec0c59be0f839109a0054a582350eb2e722a8fa7adb7b1194f |
bad_list = [
"123456",
"password",
"12345678",
"1234",
"pussy",
"12345",
"dragon",
"qwerty",
"696969",
"mustang",
"letmein",
"baseball",
"master",
"michael",
"football",
"shadow",
"monkey",
"abc123",
"pass",
"fuckme",
"6969",
"jordan",
"harley",
"ranger",
"iwantu",
"jennifer",
"hunter",
"fuck",
"2000",
"test",
"batman"... | MLTSHP/mltshp | lib/badpasswords.py | Python | mpl-2.0 | 5,002 | [
"Brian",
"CRYSTAL",
"Jaguar"
] | e12fca2fa210598dc1d429c06ea86762e102f12f3cb811a2237cef24a64dcd7c |
import json
from requests.models import RequestEncodingMixin
from config import API
from datausa.utils.format import param_format
class Viz(object):
"""A visualization object to be built using D3plus.
Attributes:
config (dict): Configuration for D3plus
data (List[dict]): A list of da... | tgarland1/datausa-site | datausa/visualize/models.py | Python | agpl-3.0 | 5,846 | [
"MOE"
] | 7afd1e45d65f56d50cd16fb3897a892995810fe331d160312d20447c2f823363 |
from ovito import *
from ovito.io import *
from ovito.modifiers import BondAngleAnalysisModifier
import numpy
node = import_file("../../files/CFG/fcc_coherent_twin.0.cfg")
modifier = BondAngleAnalysisModifier()
node.modifiers.append(modifier)
modifier.structures[BondAngleAnalysisModifier.Type.FCC].color = (1,0,0)
n... | srinath-chakravarthy/ovito | tests/scripts/test_suite/bond_angle_analysis_modifier.py | Python | gpl-3.0 | 906 | [
"OVITO"
] | bb97bd179bc8648aa42b1daf51c78809b9fea0e28f73875dfe702e7dae1dddae |
'''Term pattern matching.'''
from aterm import visitor
from aterm import parser
class Match(object):
'''Match object. Collects matched wildcards and vars
as a term is matched against.
'''
def __init__(self):
self.args = []
self.kargs = {}
def __iter__(self):
'''Iterate over the wildcards.'''
return i... | mewbak/idc | aterm/match.py | Python | lgpl-2.1 | 3,802 | [
"VisIt"
] | 7214db7c3dffdb768e9635fe9eb6b14f35887577e293c90fc926458fedd30e96 |
#
# @file TestXMLError.py
# @brief XMLError unit tests, C++ version
#
# @author Akiya Jouraku (Python conversion)
# @author Michael Hucka
#
# ====== WARNING ===== WARNING ===== WARNING ===== WARNING ===== WARNING ======
#
# DO NOT EDIT THIS FILE.
#
# This file was generated automatically by converting the file... | TheCoSMoCompany/biopredyn | Prototype/src/libsbml-5.10.0/src/bindings/python/test/xml/TestXMLError.py | Python | bsd-3-clause | 4,409 | [
"VisIt"
] | 9e3ca5053c904a0a19581e2c921b96a51f93a9d88bb0cba5d0ce69042426db60 |
import numpy as np
import scipy.stats #Note no longe resi 0 but resi 1
import ALA3, experiment_loader
import mdtraj
ff = "amber96"
prior = "maxent"
bayesian_bootstrap_run_list = [0,1]
regularization_strength = ALA3.regularization_strength_dict[prior][ff]
predictions, measurements, uncertainties = experiment_loader.... | kyleabeauchamp/EnsemblePaper | code/info_graphic/save_observable.py | Python | gpl-3.0 | 667 | [
"MDTraj"
] | 3a57aa87522c90f80434dbe2bf8de8954a29fd7d2beb956f805fc40b72725bc1 |
#!/usr/bin/env python
# Copyright (c) 2014, the GREAT3 executive committee (http://www.great3challenge.info/?q=contacts)
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without modification, are permitted
# provided that the following conditions are met:
#
# 1. Redistributions of ... | barnabytprowe/great3-public | validation/test_variable.py | Python | bsd-3-clause | 13,359 | [
"Galaxy"
] | c15f36a8d8a233939efc156f9902d0d6f91b22a5c0b38f16faeedc9394142a4d |
import json
import queue
import time
import websocket
from nxtools import logging, log_traceback
from firefly.core.common import config
from firefly.common import CLIENT_ID
from firefly.qt import QThread
if config.get("debug"):
websocket.enableTrace(True)
def readlines(f):
buff = b""
for ch in f.iter_... | immstudios/firefly | firefly/listener.py | Python | gpl-3.0 | 2,604 | [
"Firefly"
] | da8bba539e1404289aca6ee01284cc1b827634a0b979cc9b0c172bcadcf27889 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
# gpload - load file(s) into Greenplum Database
# Copyright Greenplum 2008
'''gpload [options] -f configuration file
Options:
-h hostname: host to connect to
-p port: port to connect to
-U username: user to connect as
-d database: database to connect to
... | zhangh43/incubator-hawq | tools/bin/gpload.py | Python | apache-2.0 | 94,770 | [
"ADF"
] | 24af80c8046525da0866ec8699dd713d359aee26f0d6481f8bb45289b31b0176 |
import pytest
from sqlalchemy.orm import sessionmaker
from sqlalchemy import create_engine
def pytest_addoption(parser):
parser.addoption(
'--sqlalchemy_url',
action='store',
default='sqlite:///:memory:',
help='SQLAlchemy connection url to database under test.'
)
@pytest.fixt... | koenedaele/skosprovider_sqlalchemy | tests/conftest.py | Python | mit | 4,826 | [
"VisIt"
] | fb2de44e3a7a5535fe07580858ed4b1684cfa472cebdb5bca01cf01b3ac8062b |
#
# Solution to Project Euler problem 185
# Philippe Legault
#
# https://github.com/Bathlamos/Project-Euler-Solutions
import re
from collections import deque
# Definitely not the most efficient implementation
def compute():
data = re.findall(r"\d+", DATA)
num_digits = len(data[0])
hints = tuple(data[i] for i i... | Bathlamos/Project-Euler-Solutions | solutions/p185.py | Python | mit | 2,268 | [
"VisIt"
] | 0655754903bb37b9ad85eef52ee0d3bb53d91aa4adb42043faced7ca4b48314d |
# class generated by DeVIDE::createDeVIDEModuleFromVTKObject
from module_kits.vtk_kit.mixins import SimpleVTKClassModuleBase
import vtk
class vtkMetaImageWriter(SimpleVTKClassModuleBase):
def __init__(self, module_manager):
SimpleVTKClassModuleBase.__init__(
self, module_manager,
vt... | chrisidefix/devide | modules/vtk_basic/vtkMetaImageWriter.py | Python | bsd-3-clause | 488 | [
"VTK"
] | 10ae7d50b0dd2b07ca7290b40c69bd5ccfcfe83cee809cecc322a366ef51ec47 |
artifact = u"Artifact"
creature = u"Creature"
enchantment = u"Enchantment"
land = u"Land"
planeswalker = u"Planeswalker"
instant = u"Instant"
sorcery = u"Sorcery"
permanents = frozenset({artifact, creature, enchantment, land, planeswalker})
nonpermanents = frozenset({instant, sorcery})
all = permanents | nonpermanen... | Julian/cardboard | cardboard/types.py | Python | mit | 4,144 | [
"Elk",
"Octopus"
] | 70c0a6ecd220f0aa55201325201b99c1ed19008ea89d2c3cfb3ea2326b632219 |
""" Unit test for ConsistencyInspector
"""
import unittest
import datetime
from mock import MagicMock
from DIRAC import gLogger
from DIRAC.Resources.Catalog.test.mock_FC import fc_mock
# sut
from DIRAC.DataManagementSystem.Client.ConsistencyInspector import ConsistencyInspector
class UtilitiesTestCase( unittest.Tes... | petricm/DIRAC | DataManagementSystem/Client/test/Test_Client_DataManagementSystem.py | Python | gpl-3.0 | 9,178 | [
"DIRAC"
] | 683d5888d38730774c5eb38ae5d53d58b9c133d7cece617fb5d7a66e5b02c945 |
# (c) 2014, Brian Coca, Josh Drake, et al
# (c) 2017 Ansible Project
# GNU General Public License v3.0+ (see COPYING or https://www.gnu.org/licenses/gpl-3.0.txt)
from __future__ import (absolute_import, division, print_function)
__metaclass__ = type
DOCUMENTATION = '''
cache: memcached
short_description: Use ... | hryamzik/ansible | lib/ansible/plugins/cache/memcached.py | Python | gpl-3.0 | 6,858 | [
"Brian"
] | 3c2c155b56b0d1cfc47464f329f2360117b01a8781d6eff5cbbc0c00e25034c4 |
# TODO: Determine which tests are valid for GLSAR, and under what conditions
# TODO: Fix issue with constant and GLS
# TODO: GLS: add options Iterative GLS, for iterative fgls if sigma is None
# TODO: GLS: default if sigma is none should be two-step GLS
# TODO: Check nesting when performing model based tests, lr, wald,... | phobson/statsmodels | statsmodels/regression/linear_model.py | Python | bsd-3-clause | 97,462 | [
"Gaussian"
] | aec3f2dcf23bb1a2b4a6c81d91e08981f9fe6a5cb9bfa4baa77221a0370b8f00 |
#!/usr/bin/env python
# @(#)root/tmva $Id$
# ------------------------------------------------------------------------------ #
# Project : TMVA - a Root-integrated toolkit for multivariate data analysis #
# Package : TMVA #
# Python script: TMVAClassif... | dawehner/root | tmva/test/TMVAClassification.py | Python | lgpl-2.1 | 22,352 | [
"Gaussian"
] | 0d4616b78d689a50b73bdd0246963f2a76d36860d99403c2c2508f522fcfe8c4 |
#!/usr/bin/env python
'''
setup board.h for chibios
'''
import argparse
import sys
import fnmatch
import os
import dma_resolver
import shlex
import pickle
import re
import shutil
parser = argparse.ArgumentParser("chibios_pins.py")
parser.add_argument(
'-D', '--outdir', type=str, default=None, help='Output directo... | tridge/ardupilot | libraries/AP_HAL_ChibiOS/hwdef/scripts/chibios_hwdef.py | Python | gpl-3.0 | 79,234 | [
"CRYSTAL"
] | 9c7c75af59d50b3c90b7bcc3b4ba302a96898b8e3124519527927f119bd12c30 |
# proxy module
from __future__ import absolute_import
from mayavi.modules.contour_grid_plane import *
| enthought/etsproxy | enthought/mayavi/modules/contour_grid_plane.py | Python | bsd-3-clause | 102 | [
"Mayavi"
] | 2fd3a803275b6e00e2e003816d05daa5edf1a574eeeca6cf1e9d8d63cea18713 |
import wx
import wx.grid
import wx.lib.scrolledpanel
import os
import os.path
import platform
import webbrowser
from tools import resizeTextControlForUNIX
from tools import logInfo
class EnsembleBrowserPanel(wx.lib.scrolledpanel.ScrolledPanel):
def __init__(self, parent, W, H):
if (platform.system() == "Wi... | schenc3/InteractiveROSETTA | InteractiveROSETTA/scripts/ensemblebrowser.py | Python | gpl-2.0 | 11,301 | [
"PyMOL"
] | dcedce87656dc7546bbfdf69b81e6912c83fe928d5d338a6b435b447fd106110 |
import vtk
meta_image_filename = 'labels.mhd'
# Prepare to read the file
reader_volume = vtk.vtkMetaImageReader()
reader_volume.SetFileName(meta_image_filename)
reader_volume.Update()
# Extract the region of interest
voi = vtk.vtkExtractVOI()
if vtk.VTK_MAJOR_VERSION <= 5:
voi.SetInput(reader_volume.GetOutput(... | saullocastro/pyNastran | pyNastran/gui/vtk_examples/mesh_label_image.py | Python | lgpl-3.0 | 3,353 | [
"VTK"
] | 97024a41799e97c9e9ee53066695ee8ec4dcc022bdb872e9c72bab52988c6128 |
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