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#! /usr/env/python
"""A class used to create and manage regular raster grids for 2D numerical
models in Landlab.
Do NOT add new documentation here. Grid documentation is now built in a
semi- automated fashion. To modify the text seen on the web, edit the
files `docs/text_for_[gridfile].py.txt`.
"""
import numpy as np... | landlab/landlab | landlab/grid/raster.py | Python | mit | 91,018 | [
"NetCDF"
] | 4638ea108c8825be53ea5423da4a09a3944955cf0050cfd99b2b3f0e034cac31 |
import unittest
from test.support import (verbose, refcount_test, run_unittest,
strip_python_stderr, cpython_only)
from test.script_helper import assert_python_ok, make_script, temp_dir
import sys
import time
import gc
import weakref
try:
import threading
except ImportError... | Orav/kbengine | kbe/src/lib/python/Lib/test/test_gc.py | Python | lgpl-3.0 | 34,456 | [
"VisIt"
] | b2fc07358ef7431f5aa4c5431bc6330134f65f9a9cf9745991135065ce7f0d4f |
#!/usr/bin/python
import httplib2
import os
import sys
from apiclient.discovery import build
from apiclient.errors import HttpError
from oauth2client.client import flow_from_clientsecrets
from oauth2client.file import Storage
from oauth2client.tools import argparser, run_flow
from search import searchsongs
def creat... | ankit96/flockathon | create_playlist.py | Python | mit | 2,586 | [
"VisIt"
] | b5d4994d94686b9d964d100f548d1be0c90d4da720caa4549d612afe19ab292b |
import os
import os.path as op
import shutil as sh
import fnmatch as fn
import errno
def copy(src, dest):
try:
sh.copytree(src, dest)
except OSError as e:
# If the error was caused because the source wasn't a directory
if e.errno == errno.ENOTDIR:
sh.copy(src, dest)
... | moosekaka/sweepython | rename_files.py | Python | mit | 4,380 | [
"VTK"
] | 4f7d8c774458d8a8940b8a4841cad684b2afaa46c280b783d1049f05aec3efa6 |
# -*- coding: utf-8 -*-
from neuron import Neuron
| blasterbug/SmileANN | __init__.py | Python | gpl-2.0 | 50 | [
"NEURON"
] | a38bb99c1aa62d17655424c369c5bb8ad463f945d721ccfdde21b3cdf563ada3 |
import numpy
import opengm
import os
import sys
import random
class TestAllExampes:
def test_run(self):
for r, d, f in os.walk("examples"):
for files in f:
if files.endswith(".py"):
if(not str(files).endswith('gui.py')):
pass
... | yanlend/opengm | src/interfaces/python/test.py | Python | mit | 47,835 | [
"VisIt"
] | ad38587a0bc616e1e3e1e59e26b15cc3535581791e61855129c207e4751cc933 |
#!/usr/bin/env python
"""
Artificial Intelligence for Humans
Volume 1: Fundamental Algorithms
Python Version
http://www.aifh.org
http://www.jeffheaton.com
Code repository:
https://github.com/jeffheaton/aifh
Copyright 2013 by Jeff Heaton
Licensed under the Apache License, Version 2... | trenton3983/Artificial_Intelligence_for_Humans | vol1/python-examples/examples/example_ocr.py | Python | apache-2.0 | 8,571 | [
"VisIt"
] | 1ed80270acd422bad69f31ed6de1c1bfb9ac4efaca56476a5e4042fc13f053a1 |
############################################################################
#
# Program: GDCM (Grassroots DICOM). A DICOM library
#
# Copyright (c) 2006-2011 Mathieu Malaterre
# All rights reserved.
# See Copyright.txt or http://gdcm.sourceforge.net/Copyright.html for details.
#
# This software is distributed ... | gbook/nidb | src/gdcm/Utilities/VTK/Examples/Python/headsq2dcm.py | Python | gpl-3.0 | 1,429 | [
"VTK"
] | 74ee30be074adb027ca934c5aad9967071b475713b22a69d7edbef8c4e23d3a1 |
########################################################################
# File: RequestTask.py
# Author: Krzysztof.Ciba@NOSPAMgmail.com
# Date: 2013/03/13 12:42:45
########################################################################
""" :mod: RequestTask
=================
.. module: RequestTask
:sy... | yujikato/DIRAC | src/DIRAC/RequestManagementSystem/private/RequestTask.py | Python | gpl-3.0 | 20,669 | [
"DIRAC"
] | 9165539e32b1f67673f96a533a7d3d1f740c3f49bc3b11bd68c84fa2e15447ae |
"""
Copyright (c) 2004-Present Pivotal Software, Inc.
This program and the accompanying materials are made available under
the terms of the under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.... | edespino/gpdb | src/test/tinc/tincrepo/mpp/models/regress/sql_related/regress_sql_concurrency_test_case/regress_sql_scenario_test_case.py | Python | apache-2.0 | 3,705 | [
"ORCA"
] | 91ec8d613b8e3c705d3ab48094f03cfa6dbf47e6e0f39915155a8c260713cc5c |
#!/usr/bin/env python
''' Tool for generating histograms of torsion dihedral distribution
Input:
- xyz file to be converted to gro
- gro/pdb/xtc file to be used directly in g_angle of gromacs
- meta_ndx file to contain information about which angle to calculate
this file should look line:
[ name_of_angle ]
1... | dzanek/dppc | angle_histogram.py | Python | mit | 6,119 | [
"Gromacs"
] | d1bdc973d1da56a9f1422e06a3e1635ceead5c06926dbb62901d8fd683645a12 |
# vim:ai:et:ff=unix:fileencoding=utf-8:sw=4:ts=4:
# conveyor/src/main/python/conveyor/visitor.py
#
# conveyor - Printing dispatch engine for 3D objects and their friends.
# Copyright © 2012 Matthew W. Samsonoff <matthew.samsonoff@makerbot.com>
#
# This program is free software: you can redistribute it and/or modify it ... | makerbot/conveyor | src/main/python/conveyor/visitor.py | Python | agpl-3.0 | 5,074 | [
"VisIt"
] | 7eeb9488e86bcec9ae8d1789feecc93e7583654e997cd72a34471cde88aa37f6 |
"""
This file contains view functions for wrapping the django-wiki.
"""
import logging
import re
import cgi
from django.conf import settings
from django.shortcuts import redirect
from django.utils.translation import ugettext as _
from wiki.core.exceptions import NoRootURL
from wiki.models import URLPath, Article
fro... | fintech-circle/edx-platform | lms/djangoapps/course_wiki/views.py | Python | agpl-3.0 | 4,351 | [
"VisIt"
] | 4dfc6b880aeea1049486173625b202fbafe588f85ab8630a720078596c88051c |
#!/bin/env python
"""script to concatenate the dirac.cfg file's Systems sections with the content of the ConfigTemplate.cfg files."""
from collections import OrderedDict
import os
import textwrap
import re
from DIRAC.Core.Utilities.CFG import CFG
from DIRAC import gLogger, S_OK, S_ERROR
def updateCompleteDiracCFG()... | petricm/DIRAC | docs/Tools/UpdateDiracCFG.py | Python | gpl-3.0 | 3,518 | [
"DIRAC"
] | 60840536961168f894fe89b62bdffd4f5708876edc4c4f4bf4c9c514776b5a86 |
"""
Script to prepare datafiles for analysis.
Occasionally, we need to create a new version of the datafiles that are used
in our continuous integration testing. Typically, this occurs when a new
version of Python changing something about the way bytecode is stored,
meaning that old CVs can't be reloaded in the new Py... | choderalab/openpathsampling | examples/prep_example_data.py | Python | lgpl-2.1 | 10,994 | [
"Gaussian"
] | e9688de616ff84cbe1507fd16cd8ea95aa5c211c03190434e13ea7574db7357d |
"""
Config global options
Options can be changed at run time. See tests/test_backoff.py for usage example
Options:
BACKOFF_MAX_TRIES: maximum number of times to retry failed request to wikidata endpoint.
Default: None (retry indefinitely)
To disable retry, set value to 1
BACKOFF_MAX_VALUE: maximum numb... | SuLab/WikidataIntegrator | wikidataintegrator/wdi_config.py | Python | mit | 260,018 | [
"Dalton",
"Gaussian"
] | 5f4575fbae2f21d2537feb382a757985e75668bc5f607f4ba77309e514a95f91 |
from bioblend.galaxy import GalaxyInstance
from bioblend.galaxy.histories import HistoryClient
from bioblend.galaxy.libraries import LibraryClient
from bioblend.galaxy.tools import ToolClient
from bioblend.galaxy.datasets import DatasetClient
from bioblend.galaxy.jobs import JobsClient
from urllib.parse import urlpars... | mainulhossain/phenoproc | app/biowl/libraries/galaxy/adapter.py | Python | mit | 66,841 | [
"BWA",
"Galaxy"
] | 8a7517ffdf979aea9e4a737de477b86d4262341017982f6660de69da3e6a128b |
# Copyright 2017 Battelle Energy Alliance, LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed t... | joshua-cogliati-inl/raven | framework/CodeInterfaces/RELAP7/RELAP7Interface.py | Python | apache-2.0 | 17,303 | [
"MOOSE"
] | 8634d97fcd2186b2587a919f68f1f8570df659c1570b3cad4c46b250c5960065 |
"""
alg_fri_planar_beamforming.py: LEAP reconstruction algorithm (in general) with beamforming
Copyright (C) 2017 Hanjie Pan
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the L... | hanjiepan/LEAP | alg_fri_planar_beamforming.py | Python | gpl-3.0 | 114,224 | [
"DIRAC",
"Gaussian"
] | 5826b6ebd66d970a90e5be8fbf21f50b5c3a1b213a47633ae0aeee4e0d943100 |
# -*- Mode: Python; coding: utf-8 -*-
# vi:si:et:sw=4:sts=4:ts=4
##
## Copyright (C) 2006 Async Open Source <http://www.async.com.br>
## All rights reserved
##
## This program is free software; you can redistribute it and/or modify
## it under the terms of the GNU General Public License as published by
## the Free Sof... | andrebellafronte/stoq | stoqlib/gui/utils/keyboardhandler.py | Python | gpl-2.0 | 1,967 | [
"VisIt"
] | a3a8415baff514298e0d75b54276126c424ad7441847328bee626116fe329bcb |
import os.path
from subprocess import check_call, CalledProcessError
import shutil
from tempfile import NamedTemporaryFile
import sys
import pysam
from bam_crumbs.utils.flag import create_flag
from bam_crumbs.settings import get_setting
from crumbs.utils.bin_utils import get_num_threads
# pylint: disable=C0111
def... | pziarsolo/bam_crumbs | bam_crumbs/bam_tools.py | Python | gpl-3.0 | 5,972 | [
"pysam"
] | cb27afc8d5c8e98637c48a9e021e1f8b6832180fb1c8452d78166203b558e813 |
# -*- coding: utf-8 -*-
# Copyright (C) 2019 - 2020 by Pedro Mendes, Rector and Visitors of the
# University of Virginia, University of Heidelberg, and University
# of Connecticut School of Medicine.
# All rights reserved.
# Copyright (C) 2017 - 2018 by Pedro Mendes, Virginia Tech Intellectual
# Properties, Inc.,... | copasi/COPASI | copasi/bindings/python/unittests/Test_CCopasiProblem.py | Python | artistic-2.0 | 1,744 | [
"COPASI"
] | 9618c10d996e72b565a12aa8c846c3b4b89a84f4f2205969630749c971959d2e |
#!/usr/bin/env python
# Copyright (C) 2013 Christian T. Jacobs.
# This file is part of PyQSO.
# PyQSO is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# ... | dnet/pyqso | pyqso/grey_line.py | Python | gpl-3.0 | 3,991 | [
"NetCDF"
] | 2b52c2aa75fe4e7a319b426c19d5fd67c1771ad67b5b87a7263a5caae0097f54 |
# Copyright 1999 by Jeffrey Chang. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
# Patched by Brad Chapman.
# Chris Wroe added modifications for work in myGrid
import sys
# ... | Ambuj-UF/ConCat-1.0 | src/Utils/Bio/Blast/NCBIWWW.py | Python | gpl-2.0 | 10,442 | [
"BLAST",
"Biopython"
] | d03ed4c77dd6814a2cfb89007f96fdcc8e748712470fc9604744ddf65c78f3fd |
# $Id$
#
# Copyright (C) 2003-2008 greg Landrum and Rational Discovery LLC
#
# @@ All Rights Reserved @@
# This file is part of the RDKit.
# The contents are covered by the terms of the BSD license
# which is included in the file license.txt, found at the root
# of the RDKit source tree.
#
"""unit testing code ... | bp-kelley/rdkit | rdkit/ML/UnitTestBuildComposite.py | Python | bsd-3-clause | 7,293 | [
"RDKit"
] | 7d9c74dc08f0a1dd536300e6b52d90bed5b0a0a1b405fd55dc028f1996191f35 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
import re
from monty.io import zopen
from monty.re import regrep
from collections import defaultdict
from pymatgen.core.periodic_table import Element
from pymatgen.core.lattice import Lattice
from pymatgen.c... | fraricci/pymatgen | pymatgen/io/pwscf.py | Python | mit | 18,708 | [
"CRYSTAL",
"pymatgen"
] | a956158870a19eb9534fa36f93eb24232bcc3721327906740c667d53ba574deb |
# Module to run tests on galaxy modules
from __future__ import print_function, absolute_import, division, unicode_literals
# TEST_UNICODE_LITERALS
import pytest
import os
import numpy as np
from astropy.table import Table
from astropy import units
from astropy.coordinates import SkyCoord
from frb.galaxies import ph... | FRBs/DM | frb/tests/test_photom.py | Python | bsd-3-clause | 1,444 | [
"Galaxy"
] | 2f22111ad92cf3926b8a2547084e13ffaf651ba840e7459fa34662d7d994e8fb |
# Copyright 2020 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, ... | google/article-recommender | recommender/models.py | Python | apache-2.0 | 40,296 | [
"VisIt"
] | 64e5122366c95be1bac4760c92b463104b86c7570ca9e088d57bd3f874a9b455 |
# Copyright (C) 2019 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later versio... | espressomd/espresso | testsuite/scripts/samples/test_minimal-diamond.py | Python | gpl-3.0 | 1,002 | [
"ESPResSo"
] | 24a47c13248d99fc2622c74d88e4ccb0ce8a0d16e5c1c00933d2317e80dc6066 |
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
This package provides the modules to perform FEFF IO.
FEFF: http://feffproject.org/feffproject-feff.html
"""
from .inputs import (
VALID_FEFF_TAGS,
Atoms,
FeffParserError,
Header,
Paths,
Potential... | materialsproject/pymatgen | pymatgen/io/feff/__init__.py | Python | mit | 426 | [
"FEFF",
"pymatgen"
] | 3643a8fd976c3e1cab26b4e093c267d2d96c1f3a9e3242ca4fc54b972669a80b |
import urllib.parse
web_config = {
"game": "/game/{}",
"search.filtering": "/games/ajax/filtered",
"user.data": "/userData.json",
"user.games": "/user/data/games",
"user.wishlist": "/user/wishlist.json",
"user.wishlist.add": "/user/wishlist/add/{}",
"user.wishlist.remove": "/user/wishlis... | Yepoleb/pygogapi | gogapi/urls.py | Python | mit | 4,418 | [
"Galaxy"
] | 7c8f0725fc67a15cefb846445448291af8e5363ebe03e8f8a6b3e4b07db8b0d7 |
#!/usr/bin/env python
########################################################################
# File : dirac-wms-job-kil
# Author : Stuart Paterson
########################################################################
"""
Issue a kill signal to a running DIRAC job
"""
from __future__ import print_function
__R... | fstagni/DIRAC | Interfaces/scripts/dirac-wms-job-kill.py | Python | gpl-3.0 | 1,101 | [
"DIRAC"
] | 85a9becce59c78dd1c0d5c6641ab6c55e435e9090600be7e50e61cafd61521f1 |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2016 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of ... | kannon92/psi4 | psi4/driver/procedures/wrappers_cfour.py | Python | gpl-2.0 | 36,698 | [
"CFOUR",
"Psi4"
] | 8525454d1af7c85092e760294373d723ab24da06ef3dd74dda46f21bad2e71c5 |
from vtk import *
source = vtkRandomGraphSource()
source.DirectedOff()
source.SetNumberOfVertices(100)
source.SetEdgeProbability(0) # Basically generates a tree
source.SetUseEdgeProbability(True)
source.SetStartWithTree(True)
source.IncludeEdgeWeightsOn()
# Connect to the Boost centrality filter.
centrality = vtkBoos... | b3c/VTK-5.8 | Examples/Infovis/Python/selection.py | Python | bsd-3-clause | 3,435 | [
"VTK"
] | 42e14e224d3806c11f15dcef3c4c833c2d98528b3520395dc1eb36df5e55c0bd |
import os
from ase import Atoms
from ase.calculators.exciting import Exciting
# test structure, not real
a = Atoms('N3O', [(0, 0, 0), (1, 0, 0), (0, 0, 1), (0.5, 0.5, 0.5)], pbc=True)
calculator = Exciting(
dir='excitingtestfiles',
speciespath=os.environ['EXCITINGROOT']+'/species',
paramdict={'title':{'te... | grhawk/ASE | tools/doc/ase/calculators/exciting.py | Python | gpl-2.0 | 1,199 | [
"ASE",
"exciting"
] | 0101fd0db3d75be7bfd1eb4dedf978edfc396caad8ac7a07e2334bc0f0716375 |
from __future__ import print_function, unicode_literals
import re
import itertools
from HTMLParser import HTMLParser
from coherence import log
from coherence.upnp.core import DIDLLite
from coherence.upnp.core.utils import ReverseProxyUriResource
from coherence.upnp.core.DIDLLite import (
Resource,
)
from coherenc... | SAPikachu/moe-upnp | coherence_backend.py | Python | mit | 11,272 | [
"MOE"
] | 0b0a51a0ebdbba82902346f851e6994c5d25958498f9759f35b38ee2c8555746 |
import re
def provides_facts():
"""
Returns a dictionary keyed on the facts provided by this module. The value
of each key is the doc string describing the fact.
"""
return {'personality': 'A string which is generally based on the '
'platform and indicates the behavior o... | spidercensus/py-junos-eznc | lib/jnpr/junos/facts/personality.py | Python | apache-2.0 | 2,446 | [
"Firefly"
] | 7c3840f9343a77ecd76729af65347693f92e4a3f1c3c4980cc1f3197b34987fb |
"""
block_copy.py
Optimized functions for copying all world data (blocks, tile entities, entities, biomes) from
one world or schematic file to another.
"""
from datetime import datetime
import logging
from mceditlib.selection import BoundingBox, SectionBox
log = logging.getLogger(__name__)
import numpy
impo... | Rubisk/mcedit2 | src/mceditlib/block_copy.py | Python | bsd-3-clause | 7,762 | [
"VisIt"
] | 68f0d593ac8d934eb4e13d91bb71439e4b70cbe55f4bacf3cdd08859a1193a48 |
# Copyright (C) 2017-2020 The Software Heritage developers
# See the AUTHORS file at the top-level directory of this distribution
# License: GNU Affero General Public License version 3, or any later version
# See top-level LICENSE file for more information
import random
from hypothesis import given
from django.util... | SoftwareHeritage/swh-web-ui | swh/web/tests/browse/views/test_directory.py | Python | agpl-3.0 | 16,355 | [
"VisIt"
] | 7044258b5161f818c824d9dcdfbc31f6c12cf3f8d0fc15aa7eb77823b3f72cec |
# Licensed under the Apache License, Version 2.0 (the "License"); you may
# not use this file except in compliance with the License. You may obtain
# a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# d... | yeming233/rally | tests/unit/test_test_mock.py | Python | apache-2.0 | 14,101 | [
"VisIt"
] | cf86edbd27eb628ca0b298c0776516f97636120db221eb710afb469b4c1ffa88 |
from exceptions import Exception
from libarray import *
class LinAlgError(Exception):
pass
import lu
import gauss
import qr
import svd
import inv
import chol
gauss = gauss
LULinAlgError = lu.LinAlgError
lu = lu.LUDecomposition
qr = qr.householder
lstsq = svd.lstsq
svd = svd.svd
inv = inv.inv
chol = chol.cholesky... | raphaelvalentin/qtlayout | syntax/linalg/__init__.py | Python | gpl-2.0 | 3,154 | [
"Gaussian"
] | 6be9f80046f6bc572bb761648beae28b2483e7aa10bd1d09c87b09cf912bdc58 |
import numpy as np
import scipy as sp
import os
import scipy.optimize as op
import cPickle as cpkl
import emcee
import matplotlib as mpl
mpl.use('PS')
import matplotlib.pyplot as plt
import chippr
from chippr import defaults as d
from chippr import plot_utils as pu
from chippr import utils as u
from chippr import sta... | aimalz/chippr | chippr/log_z_dens.py | Python | mit | 22,517 | [
"Gaussian"
] | 938108d76707c3bd12d699bc33b2ca47813a447158ac3bc09d66b5754c547187 |
# -*- coding: utf-8 -*-
#
# This file is part of INSPIRE.
# Copyright (C) 2016 CERN.
#
# INSPIRE is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later... | Panos512/inspire-next | tests/integration/workflows/test_arxiv_workflow.py | Python | gpl-2.0 | 11,762 | [
"Galaxy"
] | f32999735e45e9e1a5e0dace09a46b13e7178a2c6376dae5fc983becb9131e0e |
""" A driver for running YATSM on stacked Landsat/PALSAR timeseries
"""
from datetime import datetime as dt
import logging
import os
import numpy as np
import patsy
from .timeseries_yatsm import YATSMTimeSeries
from ..series import Series
from ..ts_utils import ConfigItem, find_files
logger = logging.getLogger('tsto... | ceholden/TSTools | tstools/src/ts_driver/drivers/timeseries_opticalradar.py | Python | gpl-2.0 | 4,512 | [
"VisIt"
] | a4957c3642876b2f025861b5416f281e23c088216faa009e248d15e3a8cb57c5 |
"""A setuptools based setup module.
See:
https://packaging.python.org/en/latest/distributing.html
https://github.com/pypa/sampleproject
"""
# Always prefer setuptools over distutils
from setuptools import setup, find_packages
# To use a consistent encoding
from codecs import open
from os import path
here = path.absp... | Perlkonig/sqrlserver-python | setup.py | Python | mit | 4,350 | [
"Dalton"
] | 23f31ab39932f8f6c0ae381e2ed97dc13e4597d6c43c07eb49baf1a7884c8f1a |
# script to convert the newly generated Relative Humidity
def convert_to_hur( tas_arr, vap_arr ):
esa_arr = 6.112 * np.exp( 17.62 * tas_arr/ (243.12 + tas_arr) )
# esa_arr = 6.112 * np.exp( 22.46 * tas_arr / (272.62 + tas_arr) )
return vap_arr/esa_arr * 100
def convert_to_vap( tas_arr, hur_arr ):
esa_arr = 6.112 *... | ua-snap/downscale | snap_scripts/old_scripts/tem_iem_older_scripts_april2018/tem_inputs_iem/convert_cmip5_to_vap_tem_iem.py | Python | mit | 2,838 | [
"NetCDF"
] | ec02f00727aaeba39a98538fbcea373ee4d5c186e1e3105ce86e1da68a33c11b |
# Copyright (c) 2012 Santosh Philip
# Copyright (c) 2016 Jamie Bull
# Copyright (c) 2021 Jeremy Lerond
# =======================================================================
# Distributed under the MIT License.
# (See accompanying file LICENSE or copy at
# http://opensource.org/licenses/MIT)
# ===================... | santoshphilip/eppy | eppy/modeleditor.py | Python | mit | 32,795 | [
"EPW"
] | 8d49a5f1524e9f77c84a0f5bb48cebcd13ebbec3d95d8eef5ec9905f8178b1cb |
# -*- Mode: Python; coding: utf-8 -*-
# vi:si:et:sw=4:sts=4:ts=4
##
## Copyright (C) 2006-2011 Async Open Source <http://www.async.com.br>
## All rights reserved
##
## This program is free software; you can redistribute it and/or modify
## it under the terms of the GNU Lesser General Public License as published by
## ... | andrebellafronte/stoq | stoqlib/gui/widgets/splash.py | Python | gpl-2.0 | 4,592 | [
"VisIt"
] | be9c57bf131e4b00b7625b0b8f3ae921fc760e8ae7ad6d9960cb4bd41fdb3bbb |
# plottools.py
# ALS 2016/04/28
"""
Tools for plotting images and meausrements (ellipse, contours, etc)
Contains two functions for plotting: plot_img, overplot_ellipse_fromtab
"""
import numpy as np
import matplotlib
import matplotlib.pyplot as plt
import matplotlib.gridspec as gridspec
import astropy.units as u
f... | aileisun/bubbleimg | bubbleimg/imgmeasure/iso/plottools.py | Python | mit | 13,291 | [
"Galaxy"
] | fae46e901da181792c2343533157020511d9e33d20d54442bcf5b3a617879f58 |
# __init__.py - fsmonitor initialization and overrides
#
# Copyright 2013-2016 Facebook, Inc.
#
# This software may be used and distributed according to the terms of the
# GNU General Public License version 2 or any later version.
'''Faster status operations with the Watchman file monitor (EXPERIMENTAL)
Integrates th... | smmribeiro/intellij-community | plugins/hg4idea/testData/bin/hgext/fsmonitor/__init__.py | Python | apache-2.0 | 32,575 | [
"VisIt"
] | 47609652d00587f85aea948f057683cbbc74abe34854859a1988b9e72a1dcd4e |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
from __future__ import unicode_literals
import unittest
import os
from numbers import Number
import matplotlib
import warnings
matplotlib.use("pdf")
from pymatgen.analysis.phase_diagram import *
from pymatge... | johnson1228/pymatgen | pymatgen/analysis/tests/test_phase_diagram.py | Python | mit | 23,227 | [
"pymatgen"
] | 6ae32c161f2cc0a355ecd1a009de4df341c33f013d3c5822978de7f5f00fc7fe |
#!/usr/bin/env python
# -*- coding: utf8 -*-
# *****************************************************************
# ** PTS -- Python Toolkit for working with SKIRT **
# ** © Astronomical Observatory, Ghent University **
# *****************************************************************
##... | SKIRT/PTS | magic/core/kernel.py | Python | agpl-3.0 | 33,717 | [
"Gaussian"
] | fb3c5ab10eb41f7937e02095b0b07548da23061c731613e2f5a2523a1ca3ea46 |
#!/usr/bin/env python3
log="""
----BEGIN CLASS----
[13:41] <kushal> startclass
[13:42] <dpreacher_> brb i guess..
[13:42] <kushal> Hello everyone.
[13:42] <avik> hi!
[13:42] <kushal> Welcome to the 10th edition of summer training
[13:42] <ravindra> Hello
[13:42] <BhaveshSGupta> Hello
[13:42] <bhavin192> Hello
[13:42] <... | storymode7/PythonLearning | pylogd.py | Python | mit | 51,883 | [
"VisIt"
] | 5fa85e327759321d964d3339d6baaba5742867cdd9210717f202c5645bf84639 |
# -*- coding: utf-8 -*-
#
# test_current_recording_generators.py
#
# This file is part of NEST.
#
# Copyright (C) 2004 The NEST Initiative
#
# NEST is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either versio... | tillschumann/nest-simulator | pynest/nest/tests/test_current_recording_generators.py | Python | gpl-2.0 | 9,161 | [
"NEURON"
] | 0edb0a436040cbc6cb4aa791e7d49e7d315420560ff647479818ee5c191ffc8a |
'''
Created on Apr 27, 2012
@author: Arnaud Chassagne
'''
from octopus.core.framework import ResourceNotFoundError
from octopus.dispatcher.webservice import DispatcherBaseResource
from octopus.core.communication.http import Http404, Http500
class LicensesResource(DispatcherBaseResource):
#@queue
def get(sel... | mikrosimage/OpenRenderManagement | src/octopus/dispatcher/webservice/licenses.py | Python | bsd-3-clause | 1,947 | [
"Octopus"
] | 35c4327481facacba95fe89641bdd98561c5d1412fe14d297ffdaf2dee6b53f1 |
# -*- coding: utf-8 -*-
# Copyright 2010 Dirk Holtwick, holtwick.it
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by ... | hepochen/xhtml2pdf | xhtml2pdf/parser.py | Python | apache-2.0 | 24,640 | [
"VisIt"
] | b8f1f051e57d508aa1524717a31887f090df0de5214d572b5853a22b75d03a5a |
# -*- coding: utf-8 -*-
# $Id: manpage.py 6270 2010-03-18 22:32:09Z milde $
# Author: Engelbert Gruber <grubert@users.sourceforge.net>
# Copyright: This module is put into the public domain.
"""
Simple man page writer for reStructuredText.
Man pages (short for "manual pages") contain system documentation on unix-like... | rpdillon/wikid | wikid/docutils/writers/manpage.py | Python | gpl-3.0 | 33,696 | [
"VisIt"
] | 2ef03f4ff5fc17f4b1aaf06274b4966418ccf60613742812ae307fa85f9d2a2f |
#
# Copyright (C) 2013-2019 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later... | fweik/espresso | testsuite/python/hat.py | Python | gpl-3.0 | 2,040 | [
"ESPResSo"
] | 3e71f0c836616f954429ba6e9474acfcd91f93ff8b3316c330b1a030be325251 |
"""
State Space Model
Author: Chad Fulton
License: Simplified-BSD
"""
from __future__ import division, absolute_import, print_function
from statsmodels.compat.python import long
import numpy as np
import pandas as pd
from scipy.stats import norm
from .kalman_smoother import KalmanSmoother, SmootherResults
from .kalm... | phobson/statsmodels | statsmodels/tsa/statespace/mlemodel.py | Python | bsd-3-clause | 111,554 | [
"Gaussian"
] | a15fd91d6a9f496f8ec071e19891a79ed1b7e0a104a684077fd95be5ba04c8ce |
# -*- coding: utf-8 -*-
#
#
# TheVirtualBrain-Scientific Package. This package holds all simulators, and
# analysers necessary to run brain-simulations. You can use it stand alone or
# in conjunction with TheVirtualBrain-Framework Package. See content of the
# documentation-folder for more details. See also http://ww... | rajul/tvb-library | tvb/simulator/demos/seeg_surface_deterministic.py | Python | gpl-2.0 | 4,960 | [
"Mayavi"
] | 8418ee89ec99a113a20132ef7ea6624aa329aa7fdd9943391ee6cdb3557c89e2 |
"""
Support the ISY-994 controllers.
For configuration details please visit the documentation for this component at
https://home-assistant.io/components/isy994/
"""
import logging
from urllib.parse import urlparse
import voluptuous as vol
from homeassistant.core import HomeAssistant # noqa
from homeassistant.const i... | xifle/home-assistant | homeassistant/components/isy994.py | Python | mit | 8,308 | [
"VisIt"
] | 215736ad4d1f13c756677afb0a41d6e273d816184a1f3760488e2bd92c24afdb |
from flask import Flask, render_template, session, request, redirect
import random
app = Flask(__name__)
app.secret_key = 'my_secret_key'
@app.route('/')
def index():
if not 'gold' in session:
session['gold'] = 0
if not 'activities' in session:
session['activities'] = []
return render_templ... | authman/Python201609 | Sparks_Steven/Assignments/Flask Olympics/olympics6/server.py | Python | mit | 1,282 | [
"CASINO"
] | 3c9a787fafb66e9c6ad895a2404052c38f52a869ac4eb62b4cc46997e5307db8 |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2017 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute it and/or modify
#... | rmcgibbo/psi4public | psi4/driver/p4util/inpsight.py | Python | lgpl-3.0 | 23,203 | [
"Jmol",
"Psi4"
] | bc5074ab8570c38fcedef5a7420d0829e5eda05b94bca326f2d2d52722c22717 |
# This code is developed based on RL code in the following repository in github
# https://github.com/rlcode/reinforcement-learning-kr-v2
import numpy as np
np.random.seed(1)
def channel_numpy_awgn(x_array, SNRdB):
"""
출력을 (0,1) --> (1,-1)로 바꾸고 가우시안 노이즈를 더함.
"""
#y_array = np.zeros(x_array.shape, dtype... | jskDr/jamespy_py3 | wireless/hamming_nb/environment_hm.py | Python | mit | 3,377 | [
"Gaussian"
] | 26ac17d1b7c4913bd3dbf60874d5620a73082185f10fe8c4c8510befa861a27f |
# -*- coding: utf-8 -*-
from __future__ import unicode_literals
from django.conf import settings
from django.conf.urls import include, url
from django.conf.urls.static import static
from django.contrib import admin
from django.views.generic import TemplateView
from django.views import defaults as default_views
from a... | guillaume-miara/allodoc | config/urls.py | Python | mit | 1,734 | [
"VisIt"
] | 063add6bd6202353b04e9fe64ae4a2661322d3955984d58da2ebc55b38344862 |
# -*- coding: utf-8 -*-
from splinter import Browser
from random import randint
import names, password_generator
import StringIO, urllib
import base64
import time, datetime
import sys
def main():
#how many accounts we need
ntimes = 1
for i in range(1,ntimes+1):
print... | gumbert/splinter_examples | mail_yandex.com/ya_register.py | Python | mit | 6,072 | [
"VisIt"
] | 0f2a811613079988bb1b21e3107d04fbbcafa57e39e95d663f2b5409dabf4a56 |
#! /usr/bin/env python3
# -*- coding: utf-8 -*-
# Copyright 2022 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless requi... | googleapis/python-gke-hub | scripts/fixup_gkehub_v1beta1_keywords.py | Python | apache-2.0 | 6,550 | [
"VisIt"
] | eab82e6f46edec80a4775a06751635c14e0763e8d536e8b4b31ddffc7321532c |
# ERPNext - web based ERP (http://erpnext.com)
# Copyright (C) 2012 Web Notes Technologies Pvt Ltd
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at yo... | gangadhar-kadam/mtn-erpnext | home/__init__.py | Python | agpl-3.0 | 3,495 | [
"VisIt"
] | f8a0aca71bbec662a6d57e42181ceada90979a31fd8b5feb753b6b791a7cd21b |
'''
Simulation Based on Hippocampus Recordings
Copyright Nate Sutton 2015
References:
Data from CRCNS.org hc3 .
Izhikevich neuron parameters from:
http://f1000research.com/articles/3-104/v1
'''
import pylab
import nest
import math as math
import numpy as np
'''
Create objects to run experiment with
'''
multimeter = ... | nmsutton/MemoryModule | python_version/memory_module.py | Python | mit | 6,654 | [
"NEURON"
] | 85244139f1a6adfebe570fd2e5bd2873c8dca333300a895f9a2ca6922b1428bc |
from sys import exit
from random import randint
class Scene(object):
def enter(self):
print "This scene is not yet configured. Subclass it and implement enter()."
exit(1)
class Engine(object):
def __init__(self, scene_map):
self.scene_map = scene_map
def play(self):
current_scene = s... | jessehagberg/python-playground | ex43.py | Python | cc0-1.0 | 8,834 | [
"BLAST"
] | 79d6ce0b72ba131c59b199523e1bfe720045cae554ef2d63e15c9c8705cdffef |
# -*- coding: utf-8 -*-
# Linear response with integral equations
# (c) May 2015 Aditya Gilra, EPFL.
"""
spiking neural net evolution with embedded weight matrix
written by Aditya Gilra (c) July 2015.
"""
from brian2 import * # also does 'from pylab import *'
stand_alone = False
if stand_alone: set_device('cpp... | adityagilra/2015_spiking_population_response | brian2_issue.py | Python | gpl-3.0 | 2,915 | [
"Brian"
] | 7f23d445b3658dbd020f56dc3130e6a4afe3c6efc2825a172addc7d58798624f |
# Code to be determining how long it would take to be recovering from large loss of mining power on bitcoin chain.
# Christian Bauer
def postfork_mins_per_block(y):
return 10.0/y
def postfork_days_until_diffadj(x,y):
blks=2016.0*(1-x)
return ((postfork_mins_per_block(y)*blks)/(60*24))
def postdiff_mins_p... | cjbauer/forkstats | forkstats.py | Python | agpl-3.0 | 4,356 | [
"Amber"
] | fd47e1a77d08ef879fb053df1fb8624a61e677df8f901051ad4245d42ee8df7b |
# Script Version: 1.0
# Author: Tsz Kwong Lee
# Project: AMA3D
# Task Step: 4
# This script use information from PDB to select the best CATH topology representative among all homologous domains.
# CathDomainList File format: CLF format 2.0, to find more info, please visit www.cathdb.info
# R observed - Residual facto... | teheavy/AMA3D | Nh3D/4_CathBestTopo_filter_V2.0.py | Python | gpl-2.0 | 11,298 | [
"VisIt"
] | 349d81317bac3fc0fdcb033050fa05ad34e0954844bc30dda91f2a301e7fdbe3 |
class ESInitConfig(object):
def packages(self):
return {
'rpm': {
'elasticsearch': 'https://download.elastic.co/elasticsearch/release/org/elasticsearch/distribution/rpm/elasticsearch/2.4.1/elasticsearch-2.4.1.rpm' # TODO: abstract version number
},
'py... | mccormickmichael/laurel | app/elk/tiny_initconfig.py | Python | unlicense | 2,896 | [
"Elk"
] | c6704e14706a12c914cecfb033095aed254a31b1869b056910b923330c78204f |
"""
============================================
Tuning a scikit-learn estimator with `skopt`
============================================
Gilles Louppe, July 2016
Katie Malone, August 2016
Reformatted by Holger Nahrstaedt 2020
.. currentmodule:: skopt
If you are looking for a :obj:`sklearn.model_selection.GridSearc... | scikit-optimize/scikit-optimize.github.io | 0.8/_downloads/88cba5cd0a3cd7c57cbd0a7201157e8f/hyperparameter-optimization.py | Python | bsd-3-clause | 4,311 | [
"Gaussian"
] | 54a8d899309ba61b68ef12044a2adc570156e1f3a2fabec66aa62b0a73d2cc4b |
# This file is part of INDXParse.
#
# Copyright 2011, 2012 Willi Ballenthin <william.ballenthin@mandiant.com>
# while at Mandiant <http://www.mandiant.com>
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.... | williballenthin/INDXParse | INDXParse.py | Python | apache-2.0 | 33,119 | [
"Brian"
] | 10cb219e75107bf1204877804df6bafb1b7c5f2fa15fd304776d3b31c90b1edc |
import numpy as np
from cs231n.layers import *
from cs231n.fast_layers import *
from cs231n.layer_utils import *
class ThreeLayerConvNet(object):
"""
A three-layer convolutional network with the following architecture:
conv - relu - 2x2 max pool - affine - relu - affine - softmax
The netwo... | UltronAI/Deep-Learning | CS231n/reference/CS231n-master/assignment2/cs231n/classifiers/cnn.py | Python | mit | 4,748 | [
"Gaussian"
] | 4cf249ad84f78a8e9b898d59c05ab4776f84b45145dfa03559c33070f47a7df3 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""Tools for working with audio data.
This module provides routines for saving/loading and manipulating audio samples.
"""
__all__ = [
'array2wav',
'wav2array',
'sinetone',
'squaretone',
'sawtone',
'whiteNoise',
'audioBufferSize',
'SAMPLE_... | psychopy/psychopy | psychopy/tools/audiotools.py | Python | gpl-3.0 | 8,351 | [
"Gaussian"
] | cbb791335df5e70a9b9c6fcd97cb63e68b8ce3adab741d7459b5652668726ffe |
# vim:fileencoding=utf-8
# Copyright (c) 2009, 2010, 2011, 2012 Andrey Golovizin
#
# Permission is hereby granted, free of charge, to any person obtaining
# a copy of this software and associated documentation files (the
# "Software"), to deal in the Software without restriction, including
# without limitation the ri... | oseledets/pybtex | pybtex/tests/bibtex_parser_test.py | Python | mit | 15,057 | [
"Brian"
] | ef3d288e7858effe23c0dfc7f2d22fa678133d3762515be376fc548837312212 |
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Kaiju(MakefilePackage):
"""Kaiju is a program for the taxonomic classification
of high... | LLNL/spack | var/spack/repos/builtin/packages/kaiju/package.py | Python | lgpl-2.1 | 969 | [
"HTSeq"
] | 4e71f0dd92588d3be76047c8d08586baf04bb59633450bfe3eccd2d11a0598f1 |
# -*- coding: utf-8 -*-
"""Main IPython class."""
#-----------------------------------------------------------------------------
# Copyright (C) 2001 Janko Hauser <jhauser@zscout.de>
# Copyright (C) 2001-2007 Fernando Perez. <fperez@colorado.edu>
# Copyright (C) 2008-2011 The IPython Development Team
#
# Distribu... | boompieman/iim_project | project_python2/lib/python2.7/site-packages/IPython/core/interactiveshell.py | Python | gpl-3.0 | 132,557 | [
"VisIt"
] | 3a0529887fd17526356128b8b496c338efe240aebbe4e6ef5ec01f9d3644df83 |
from __main__ import vtk, qt, ctk, slicer
import string
import numpy
import math
import operator
import collections
class RenyiDimensions:
def __init__(self, matrixPadded, matrixPaddedCoordinates, allKeys):
self.renyiDimensions = collections.OrderedDict()
self.renyiDimensions["Box-Counting Dimensi... | acil-bwh/SlicerCIP | Scripted/CIP_LesionModel/FeatureExtractionLib/RenyiDimensions.py | Python | bsd-3-clause | 4,792 | [
"VTK"
] | a0979f83b9219cb327bfb37652b3dbba13ed66b62e1e439d58b80b72ba23b90e |
#!/usr/bin/env python
"""
Easy Install
------------
A tool for doing automatic download/extract/build of distutils-based Python
packages. For detailed documentation, see the accompanying EasyInstall.txt
file, or visit the `EasyInstall home page`__.
__ https://setuptools.readthedocs.io/en/latest/easy_install.html
""... | jsirois/pex | pex/vendor/_vendored/setuptools/setuptools/command/easy_install.py | Python | apache-2.0 | 90,093 | [
"VisIt"
] | 913ad1d183a17645fc5c3ebe412e7f9926c2cd3fb05c14b7cea0973b9db823ef |
## @package teetool
# This module contains the Visual_3d class
#
# See Visual_3d class for more details
import numpy as np
from scipy.interpolate import griddata
import mayavi.mlab as mlab
import time
import teetool as tt
## Visual_3d class generates the 3d output using Mayavi
class Visual_3d(object):
## Cons... | WillemEerland/teetool | teetool/visual_3d.py | Python | mit | 15,383 | [
"Mayavi"
] | 7974524a900437b4a7a0ef662fe2b07d32ec09a6ca48638dd8c1c3d88875e2da |
#!/usr/bin/python
from __future__ import print_function
from __future__ import division
import sys
import os.path
import subprocess as sp
import logging
import warnings
import argparse
from collections import defaultdict
import numpy as np
import forgi.threedee.model.coarse_grain as ftmc
import forgi.threedee.utilit... | ViennaRNA/forgi | examples/visualize_rna.py | Python | gpl-3.0 | 12,630 | [
"PyMOL"
] | c8be1eceab5884c0f64d78426136b4943c399f5d77cd6b6dc7ac1105078015d5 |
# coding=utf-8
# Copyright 2022 The Edward2 Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law o... | google/edward2 | edward2/tensorflow/initializers.py | Python | apache-2.0 | 30,542 | [
"Gaussian"
] | 087c395a455993a1bb43be8a809bb27ddc96e62a314ef5b686937b463a6d8b7d |
# Copyright (C) 2012,2013
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of t... | BackupTheBerlios/espressopp | src/analysis/Configurations.py | Python | gpl-3.0 | 2,939 | [
"ESPResSo"
] | db0958ec4f176f4795cbca84bca870253c3e8417584c6840794c9c49d8e27928 |
import unittest
from test import test_support
from itertools import *
import weakref
from decimal import Decimal
from fractions import Fraction
import sys
import operator
import random
import copy
import pickle
from functools import reduce
maxsize = test_support.MAX_Py_ssize_t
minsize = -maxsize-1
def onearg(x):
'... | mancoast/CPythonPyc_test | cpython/278_test_itertools.py | Python | gpl-3.0 | 68,195 | [
"GULP"
] | 813a0c821ef8dca2d3beb313fccb31a056b6e68569e27992cb5ba85d37918647 |
# Copyright 2010 by Andrea Pierleoni
# Revisions copyright 2010, 2016 by Peter Cock
# All rights reserved.
#
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
"""Bio.SeqIO support for the "uniprot-xml"... | zjuchenyuan/BioWeb | Lib/Bio/SeqIO/UniprotIO.py | Python | mit | 25,310 | [
"Biopython"
] | d5f200ac7f3d3242dcf4328f904b69bae7967f7d732c4225c42baf1ca29a4835 |
# -*- coding: utf-8 -*-
# @author: Alexander Pitchford
# @email1: agp1@aber.ac.uk
# @email2: alex.pitchford@gmail.com
# @organization: Aberystwyth University
# @supervisor: Daniel Burgarth
"""
Pulse generator - Generate pulses for the timeslots
Each class defines a gen_pulse function that produces a float array of
siz... | cgranade/qutip | qutip/control/pulsegen.py | Python | bsd-3-clause | 41,865 | [
"Gaussian"
] | 51f57de12d7d2ff632e4033559baadba7bf6318704de63cbdfe6dad0b027a52b |
'''
from armor.tests import test20131128momentNormalisation as t
reload(t)
t.main()
from armor import pattern ; from armor.tests import test20131128momentNormalisation as t
reload(pattern) ; reload(t) ; x= t.main2()
import matplotlib.pyplot as plt
x = [v[0] for v in corrStats if v[0]<=43200] # max time diff: hal... | yaukwankiu/armor | tests/test20131128momentNormalisation.py | Python | cc0-1.0 | 4,233 | [
"Gaussian"
] | 2639b2055f7c75a14af14ee7e31b7536cfd331d95c3b223b2b0df7d2877617d5 |
import os
import time
import numpy as np
import collections
import scipy
import scipy.sparse
import scipy.sparse.linalg
import scikits.sparse.cholmod
import pyublas
import hashlib
import types
import marshal
from features import featurizer_from_string, recover_featurizer
from cover_tree import VectorTree, MatrixTree
f... | davmre/treegp | gp.py | Python | gpl-3.0 | 78,311 | [
"Gaussian"
] | 2e351f3ef7feaa5059a463c59f61bf2f5f06b35bc8b83895dbeb39cec733dc46 |
from desc.sims.GCRCatSimInterface import InstanceCatalogWriter
catalog_version = 'cosmoDC2_v1.1.4'
agnDB = '/global/projecta/projectdirs/lsst/groups/SSim/DC2/cosmoDC2_v1.1.4/agn_db_mbh7_mi30_sf4.db'
sneDB = '/global/projecta/projectdirs/lsst/groups/SSim/DC2/cosmoDC2_v1.1.4/sne_cosmoDC2_v1.1.4_MS_DDF.db'
sed_lookup_dir... | DarkEnergyScienceCollaboration/Twinkles | utils/catalog_production/create_unsprinkled_cat.py | Python | mit | 1,115 | [
"VisIt"
] | 422114b08d8de823ebea6d00b4ea9ee478c5322f526f885df1f76d37f46d0078 |
#import SYS
import ShareYourSystem as SYS
#Definition
MyBrianer=SYS.BrianerClass(
).collect(
"Neurongroupers",
'P',
SYS.NeurongrouperClass(
#Here are defined the brian classic shared arguments for each pop
**{
'NeurongroupingKwargVariablesDict':
{
'N':2,
'model':
'''
Jr : 1
... | Ledoux/ShareYourSystem | Pythonlogy/draft/Simulaters/Brianer/draft/07_ExampleDoc.py | Python | mit | 1,597 | [
"Brian"
] | dcaead3541ed91ed0df1c556e12c9f84d176e002aaf46611ebfd090e89f3aab2 |
# pylint: disable=no-init,too-few-public-methods
from __future__ import (absolute_import, division, print_function)
from mantid.kernel import *
from mantid.simpleapi import *
from mantid.api import *
from mantid.geometry import SpaceGroupFactory, CrystalStructure, UnitCell
from six import iteritems
import re
import nu... | dymkowsk/mantid | Framework/PythonInterface/plugins/algorithms/LoadCIF.py | Python | gpl-3.0 | 18,330 | [
"CRYSTAL"
] | bc12649350ab8d50babd74081b3641fb2ae7d14efe484e0c71c73d78904933ed |
import metakit, re, pickle, string, os.path
import rdatabase
import gourmet.gglobals as gglobals
from gourmet import keymanager,shopping,convert
from gourmet.defaults import lang as defaults
from gourmet.gdebug import *
from gettext import gettext as _
class RecData (rdatabase.RecData):
"""A class to keep recipe d... | Linutux/Gourmet | gourmet/legacy_db/db_085/rmetakit.py | Python | gpl-2.0 | 16,071 | [
"Brian"
] | 13fd5ba5065aaf37bd797cc4a1f6cffc895f7506ba5c010e4161373569cfcdbf |
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2000-2006 Donald N. Allingham
# Copyright (C) 2008 Brian G. Matherly
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; ... | arunkgupta/gramps | gramps/plugins/import/importgpkg.py | Python | gpl-2.0 | 5,219 | [
"Brian"
] | f573949fe72fc21839bbd34e0f8e58c66f36b8daca9f3a75e88fcf63d489bdb3 |
# -*- coding: utf-8 -*-
#------------------------------------------------------------
# pelisalacarta - XBMC Plugin
# Canal para asiansubita
# http://blog.tvalacarta.info/plugin-xbmc/pelisalacarta/
#------------------------------------------------------------
import urlparse,urllib2,urllib,re
import os, sys
from core ... | Zanzibar82/plugin.video.pelisalacarta_ui.pureita | channels/asiansubita.py | Python | gpl-3.0 | 5,155 | [
"ADF"
] | 924b6871f03bb0a6435a299329574863da898e9b75f2e91854fdf84d97b9322d |
#!/usr/bin/env python
# category General
# desc Removes reads from a BAM file based on criteria
"""
Removes reads from a BAM file based on criteria
Given a BAM file, this script will only allow reads that meet filtering
criteria to be written to output. The output is another BAM file with the
reads not matching the cr... | SANBI-SA/tools-iuc | tools/ngsutils/filter.py | Python | mit | 28,232 | [
"pysam"
] | e51580b9f09a71717c4d97fda73565194ef8142aafab9fdf5a862e4020351cf3 |
"""
some helper functions used by watchteleboy
"""
import argparse
import configparser
from datetime import date, datetime, time, timedelta
import os
import random
import sys
import crontab # DEB: python3-crontab
import wt
CONFIG_TEMPLATE = """[watchteleboy]
# watchteleboy configuration
# Teleboy Login Credentials... | reduzent/watchteleboy | wt/helpers.py | Python | gpl-2.0 | 10,284 | [
"VisIt"
] | e5c34706360d7afa9c71cba69aab6b1d0d78e2393591176586c45bea63c63f12 |
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