language
stringclasses
2 values
func_code_string
stringlengths
63
466k
python
def display(self): """ dump operation """ print("{}".format(self)) for task in self.tasks: print(" - {}".format(task))
java
@Override public void copyFrom(final CopyFrom obj) { final OpenSearchModule osm = (OpenSearchModule) obj; setTotalResults(osm.getTotalResults()); setItemsPerPage(osm.getItemsPerPage()); setStartIndex(osm.getStartIndex()); setLink(osm.getLink()); for (final OSQuery q :...
python
def _raw_to_der(self, raw_signature): """Convert signature from RAW encoding to DER encoding.""" component_length = self._sig_component_length() if len(raw_signature) != int(2 * component_length): raise ValueError("Invalid signature") r_bytes = raw_signature[:component_lengt...
python
def pretty_echo(cls, message): """ Display message using pretty print formatting. """ if cls.intty(): if message: from pprint import pprint pprint(message)
python
def _get_query_uri(self): """ Returns the URI endpoint for performing queries of a Predix Time Series instance from environment inspection. """ if 'VCAP_SERVICES' in os.environ: services = json.loads(os.getenv('VCAP_SERVICES')) predix_timeseries = services...
java
private synchronized <T> void connect(OpenStackRequest<T> request) throws KeyManagementException, NoSuchAlgorithmException { /* * If we've already set up the client, return it. Otherwise, set it up and cache the client for subsequent use. */ if (client != null) { re...
python
def prepare_headers(oauth_params, headers=None, realm=None): """**Prepare the Authorization header.** Per `section 3.5.1`_ of the spec. Protocol parameters can be transmitted using the HTTP "Authorization" header field as defined by `RFC2617`_ with the auth-scheme name set to "OAuth" (case insensit...
python
def assemble(ops, target=None): """ Assemble a set of :class:`Op` and :class:`Label` instance back into bytecode. Arguments: ops(list): A list of opcodes and labels (as returned by :func:`disassemble`). target: The opcode specification of the targeted python vers...
python
def setEventCallback(self, event, callback): """ Set a function to call for a given event. event must be one of: TRANSFER_COMPLETED TRANSFER_ERROR TRANSFER_TIMED_OUT TRANSFER_CANCELLED TRANSFER_STALL TRANSFER_NO_DEVICE ...
java
public static Evaluation getEvaluation(ComputationGraph model, MultiDataSetIterator testData) { if (model.getNumOutputArrays() != 1) throw new IllegalStateException("GraphSetSetAccuracyScoreFunction cannot be " + "applied to ComputationGraphs with more than one output. Nu...
java
@Override public int countByCommerceShippingMethodId(long commerceShippingMethodId) { FinderPath finderPath = FINDER_PATH_COUNT_BY_COMMERCESHIPPINGMETHODID; Object[] finderArgs = new Object[] { commerceShippingMethodId }; Long count = (Long)finderCache.getResult(finderPath, finderArgs, this); if (count == n...
python
def start_to(self, ip, tcpport=102): """ start server on a specific interface. """ if tcpport != 102: logger.info("setting server TCP port to %s" % tcpport) self.set_param(snap7.snap7types.LocalPort, tcpport) assert re.match(ipv4, ip), '%s is invalid ipv4'...
java
private void update(I image) { computeCurrToInit_PixelTran(); // only process a cropped portion to speed up processing RectangleLength2D_I32 box = DistortImageOps.boundBox(image.width, image.height, stitchedImage.width, stitchedImage.height,work, tranCurrToWorld); int x0 = box.x0; int y0 = box.y0; int...
python
def serving_input_fn(self, hparams): """For serving/predict, assume that only video frames are provided.""" video_input_frames = tf.placeholder( dtype=tf.float32, shape=[ None, hparams.video_num_input_frames, self.frame_width, self.frame_height, self.num_channels ...
java
public static int getResId(@NonNull final Context context, @AttrRes final int resourceId, final int defaultValue) { return getResId(context, -1, resourceId, defaultValue); }
java
private CALC unbindAll(AbstractCalculator<CALC> undbindFrom) { // find root and first child AbstractCalculator root = undbindFrom.parentCalculator != null ? undbindFrom.parentCalculator : undbindFrom; AbstractCalculator child = root.childCalculator; while (root != null) { ...
python
def repel_text_from_bboxes(add_bboxes, texts, renderer=None, ax=None, expand=(1.2, 1.2), only_use_max_min=False, move=False): """ Repel texts from other objects' bboxes while expanding their (texts') bounding boxes by expand (x, y), e.g. (1.2, 1.2) would...
java
@Override protected FieldItem[] getDefaultTaskData() { FieldItem[] result = new FieldItem[] { new FieldItem(TaskField.UNIQUE_ID, FieldLocation.FIXED_DATA, 0, 0, 0, 0, 0), new FieldItem(TaskField.ID, FieldLocation.FIXED_DATA, 0, 4, 0, 0, 0), new FieldItem(TaskField.EARLY_FINISH,...
java
public void addColumn(ByteBuffer name, ByteBuffer value, long timestamp) throws IOException { addColumn(new BufferCell(metadata.comparator.cellFromByteBuffer(name), value, timestamp)); }
python
def process_stats(self, stats, prefix, metric_categories, nested_tags, tags, recursion_level=0): """ The XML will have Stat Nodes and Nodes that contain the metrics themselves This code recursively goes through each Stat Node to properly setup tags where each Stat will have a different t...
java
public Iterable<DColumn> getAllColumns(String storeName, String rowKey) { return getColumnSlice(storeName, rowKey, null, null); }
python
def fintlist(alist): """A list of integers""" outlist = [] if not isinstance(alist, (list, tuple)): # we have a string (comma-separated integers) alist = alist.strip().strip("[] ").split(",") for it in alist: if it: outlist.append(fint(it)) return outlist
java
public void encode(DataItem dataItem) throws CborException { if (dataItem == null) { dataItem = SimpleValue.NULL; } if (dataItem.hasTag()) { Tag tagDi = dataItem.getTag(); tagEncoder.encode(tagDi); } switch (dataItem.getMajorType()) { ...
python
def from_handle(fh, stream_default='fasta'): """ Look up the BioPython file type corresponding to a file-like object. For stdin, stdout, and stderr, ``stream_default`` is used. """ if fh in (sys.stdin, sys.stdout, sys.stderr): return stream_default return from_filename(fh.name)
java
@Override public AdminAddUserToGroupResult adminAddUserToGroup(AdminAddUserToGroupRequest request) { request = beforeClientExecution(request); return executeAdminAddUserToGroup(request); }
python
def paired_reader_from_bamfile(args, log, usage_logger, annotated_writer): '''Given a BAM file, return a generator that yields filtered, paired reads''' total_aligns = pysamwrapper.total_align_count(args.input_bam) ...
java
protected void prepareDirectories() throws ManagedProcessException { baseDir = Util.getDirectory(configuration.getBaseDir()); libDir = Util.getDirectory(configuration.getLibDir()); try { String dataDirPath = configuration.getDataDir(); if (Util.isTemporaryDirectory(dataDi...
java
public RouteTableInner createOrUpdate(String resourceGroupName, String routeTableName, RouteTableInner parameters) { return createOrUpdateWithServiceResponseAsync(resourceGroupName, routeTableName, parameters).toBlocking().last().body(); }
python
def piece_to_id(input, model_file=None, model_proto=None, name=None): """Converts piece into vocabulary id. Args: input: An arbitrary tensor of string. model_file: The sentencepiece model file path. model_proto: The sentencepiece model serialized proto. Either `model_file` or `model_pr...
java
private String getJspRfsPath(CmsResource resource, boolean online) throws CmsLoaderException { String jspVfsName = resource.getRootPath(); String extension; int loaderId = OpenCms.getResourceManager().getResourceType(resource.getTypeId()).getLoaderId(); if ((loaderId == CmsJspLoader.RES...
java
public static Double getDoubleValue(JSONObject jsonObject, String key) throws JSONException { checkArguments(jsonObject, key); JSONValue value = jsonObject.get(key); if (value != null && value.isNumber() != null) { double number = ((JSONNumber) value).doubleValue(); return number; } return null; }
java
@Override public String processReturningText(String xml, HttpAction hm) { XmlConverter.failOnError(xml); if (moveToken) { token.processReturningText(xml, hm); moveToken = false; } else { log.debug("Got returning text: \"{}\"", xml); setHasMoreMessages(false); } return ""; ...
python
def expand_abbreviations(template, abbreviations): """Expand abbreviations in a template name. :param template: The project template name. :param abbreviations: Abbreviation definitions. """ if template in abbreviations: return abbreviations[template] # Split on colon. If there is no c...
java
public static Status cpe(String value) { if ("cpe:2.3:".regionMatches(0, value, 0, 8)) { return formattedString(value); } return cpeUri(value); }
java
public void debug(Object message) { if (IS12) { getLogger().log(FQCN, Level.DEBUG, message, null); } else { getLogger().log(FQCN, Level.DEBUG, message, null); } }
java
public static String getcompressedKeyword(Text keyword) { String compressedKeyword = ""; String key = keyword.getText(); String remove = " ()+,/:[]<>\"*"; for (int i = 0; i < key.length(); i++) { if (remove.indexOf(key.charAt(i)) == -1) { compressedKeyword = compressedKeyword + key.charAt(i); } ...
java
public static int calculateMaxPartitionSize(int maxEntryCount, int partitionCount) { final double balancedPartitionSize = (double) maxEntryCount / (double) partitionCount; final double approximatedStdDev = Math.sqrt(balancedPartitionSize); int stdDevMultiplier; if (maxEntryCount <= STD_...
java
public void serialize(DocumentImpl doc) throws IOException { org.w3c.dom.Document w3cDoc = doc.getDocument(); if (w3cDoc instanceof HTMLDocumentImpl) { // if w3cDoc has no document type default to html5: <!DOCTYPE html> writer.write("<!DOCTYPE html"); DocumentType dt = w3cDoc.getDoctype(); if (dt ...
java
protected Thread createPump(InputStream is, OutputStream os, boolean closeWhenExhausted, boolean flushImmediately) { return newThread(new StreamPumper(is, os, closeWhenExhausted, flushImmediately)); }
java
@Nullable public static Properties loadPropertiesFromResource(URL resource) { try (InputStream stream = resource.openStream()) { return loadProperties(stream); } catch (IOException e) { LOG.warn("Failed to read properties from {}: {}", resource, e.toString()); return null; } }
java
void log(IpcLogEntry entry) { Level level = entry.getLevel(); Predicate<Marker> enabled; BiConsumer<Marker, String> log; switch (level) { case TRACE: enabled = logger::isTraceEnabled; log = logger::trace; break; case DEBUG: enabled = logger::isDebugEnabled; ...
java
private void resetCorrectOffsets() { String kafkaServers = consumerContext.getProperties().getProperty("bootstrap.servers"); String zkServers = consumerContext.getProperties().getProperty("zookeeper.connect"); if(StringUtils.isAnyBlank(kafkaServers,zkServers)){ logger.warn("resetCorrectOffsets exit。Please chec...
java
@NonNull public static Intent newIntent(@NonNull Context context, boolean requirePostalField, boolean updatesCustomer) { return new Intent(context, AddSourceActivity.class) .putExtra(EXTRA_SHOW_ZIP, requirePostalField) ...
python
def QA_fetch_future_day_adv( code, start, end=None, if_drop_index=True, # 🛠 todo collections 参数没有用到, 且数据库是固定的, 这个变量后期去掉 collections=DATABASE.index_day): ''' :param code: code: 字符串str eg 600085 :param start: 字符串str 开始日期 eg 2011-01-01 :param end: 字符串str 结束日期 eg ...
java
public void addReport(ValidationReport report) { errors.addAll(report.errors); warnings.addAll(report.warnings); oks.addAll(report.oks); cdkErrors.addAll(report.cdkErrors); }
java
private void writeVarUInt(int v) { int offset = myOffset; if (v < (1 << (7 * 1))) // 1 byte - 7 bits used - 0x7f max { if (--offset < 0) { offset = growBuffer(offset); } myBuffer[offset] = (byte) (v | 0x80 ); } ...
python
def fit(self, X, y, **fit_params): """Find the best parameters for a particular model. Parameters ---------- X, y : array-like **fit_params Additional partial fit keyword arguments for the estimator. """ return default_client().sync(self._fit, X, y, *...
python
def process_gene_interaction(self, limit): """ The gene interaction file includes identified interactions, that are between two or more gene (products). In the case of interactions with >2 genes, this requires creating groups of genes that are involved in the interaction. ...
java
public void removeLockedObject() { if (this != resourceLocks.root && !this.getPath().equals("/")) { int size = parent.children.length; for (int i = 0; i < size; i++) { if (parent.children[i].equals(this)) { LockedObject[] newChildren = new LockedObjec...
java
protected void reflectionAppendArrayDetail(StringBuilder buffer, String fieldName, Object array) { buffer.append(arrayStart); int length = Array.getLength(array); for (int i = 0; i < length; i++) { Object item = Array.get(array, i); if (i > 0) { buffer.app...
python
def roots(self): """get the nodes with no children""" return [x for x in self._nodes.values() if x.id not in self._c2p]
java
public double getDouble(final int index, final ByteOrder byteOrder) { if (SHOULD_BOUNDS_CHECK) { boundsCheck0(index, SIZE_OF_DOUBLE); } if (NATIVE_BYTE_ORDER != byteOrder) { final long bits = UNSAFE.getLong(byteArray, addressOffset + index); ...
java
public static FileFilter adapt(final Filter<File> toAdapt) { // Check sanity Validate.notNull(toAdapt, "toAdapt"); // Already a FileFilter? if (toAdapt instanceof FileFilter) { return (FileFilter) toAdapt; } // Wrap and return. return new FileFilter...
java
private void fill() throws IOException { byte[] buffer = getBufIfOpen(); if (markpos < 0) pos = 0; /* no mark: throw away the buffer */ else if (pos >= buffer.length) /* no room left in buffer */ if (markpos > 0) { /* can throw away early part of the buffer *...
python
def _parse_tree(self, node): """ Parse a <checksum> object """ if 'filename' in node.attrib: self.filename = node.attrib['filename'] if 'type' in node.attrib: self.kind = node.attrib['type'] if 'target' in node.attrib: self.target = node.attrib['target...
java
public void show(int x, int y) { disabledHLayout.setSize("100%", "100%"); disabledHLayout.setStyleName("disabledBackgroundStyle"); disabledHLayout.show(); loadingImg.setSize("100px", "100px"); loadingImg.setTop(y); //loading image height is 50px loadingImg.setLeft(x); //...
python
def draw(self, img, pixmapper, bounds): '''draw a polygon on the image''' if self.hidden: return (x,y,w,h) = bounds spacing = 1000 while True: start = mp_util.latlon_round((x,y), spacing) dist = mp_util.gps_distance(x,y,x+w,y+h) cou...
python
def insert(self, data, **kwargs): """ Calls the create method of OBJTYPE NOTE: this function is only properly usable on children classes that have overridden either OBJTYPE or PATH. @param data: the data of the new object to be created @param **kwargs: f...
python
def _write_triggers(self, fh, triggers, indent=""): """Write triggers to a file handle. Parameters: fh (file): file object. triggers (list): list of triggers to write. indent (str): indentation for each line. """ for trig in triggers: fh....
python
def best_oob_mae_weight(trees): """ Returns weights so that the tree with smallest out-of-bag mean absolute error """ best = (+1e999999, None) for tree in trees: oob_mae = tree.out_of_bag_mae if oob_mae is None or oob_mae.mean is None: cont...
python
def _from_dict(cls, _dict): """Initialize a MessageContext object from a json dictionary.""" args = {} if 'global' in _dict: args['global_'] = MessageContextGlobal._from_dict( _dict.get('global')) if 'skills' in _dict: args['skills'] = MessageConte...
java
protected ListItemHostWidget getRecycleableView(int dataIndex) { ListItemHostWidget host = null; try { host = getHostView(dataIndex); if (host != null) { if (host.isRecycled()) { Widget view = getViewFromAdapter(dataIndex, host); ...
python
def fetch_search_document(self, *, index): """Fetch the object's document from a search index by id.""" assert self.pk, "Object must have a primary key before being indexed." client = get_client() return client.get(index=index, doc_type=self.search_doc_type, id=self.pk)
java
protected boolean prePrepare() { if (tc.isEntryEnabled()) Tr.entry(tc, "prePrepare"); // // Cancel timeout prior to completion phase // cancelAlarms(); // // Inform the Synchronisations we are about to complete // if (!_rollbackOnly) ...
python
def translate(rect, x, y, width=1): """ Given four points of a rectangle, translate the rectangle to the specified x and y coordinates and, optionally, change the width. :type rect: list of tuples :param rect: Four points describing a rectangle. :type x: float :param x: The amount to sh...
java
public V setValue(final V value) { V oldValue = this.getValue(); this.values[tree.pageIndex] = value; return oldValue; }
python
def set_observable(self,tseq,qseq): """Set the observable sequence data :param tseq: target sequence (from the homopolymer) :param qseq: query sequence ( from the homopolymer) :type tseq: string :type qseq: string """ tnt = None qnt = None if len(tseq) > 0: tnt = tseq[0] if len...
python
def from_db(cls, db, force=False): """Make instance from database. For performance, this caches the episode types for the database. The `force` parameter can be used to bypass this. """ if force or db not in cls._cache: cls._cache[db] = cls._new_from_db(db) ...
python
def update(self, alert_condition_infra_id, policy_id, name, condition_type, alert_condition_configuration, enabled=True): """ This API endpoint allows you to update an alert condition for infrastucture :type alert_condition_infra_id: int :param alert_condition_infra_id: A...
java
private String getDialogTitle() { SharedPreferences sharedPreferences = PreferenceManager.getDefaultSharedPreferences(getActivity()); String key = getString(R.string.dialog_title_preference_key); String defaultValue = getString(R.string.dialog_title_preference_default_value); ...
java
public PendingCall present() { logDialogActivity(activity, fragment, getEventName(appCall.getRequestIntent()), AnalyticsEvents.PARAMETER_DIALOG_OUTCOME_VALUE_COMPLETED); if (onPresentCallback != null) { try { onPresentCallback.onPresent(activity); ...
java
@Override public final HeadDocument findByFileAndString( final String filename, final String string) { final Query searchQuery = new Query(Criteria.where("string").is(string) .and("filename").is(filename)); final HeadDocument headDocument = mongoTemplate.f...
python
def add_source(name, source_location, username=None, password=None): ''' Instructs Chocolatey to add a source. name The name of the source to be added as a chocolatey repository. source Location of the source you want to work with. username Provide username for chocolatey ...
python
def int_imf_dm(m1,m2,m,imf,bywhat='bymass',integral='normal'): ''' Integrate IMF between m1 and m2. Parameters ---------- m1 : float Min mass m2 : float Max mass m : float Mass array imf : float IMF array bywhat : string, optional 'bymass' in...
python
def parseFullScan(self, i, modifications=False): """ parses scan info for giving a Spectrum Obj for plotting. takes significantly longer since it has to unzip/parse xml """ scanObj = PeptideObject() peptide = str(i[1]) pid=i[2] scanObj.acc = self.protein_map.get(i...
python
def hydrate_input_references(input_, input_schema, hydrate_values=True): """Hydrate ``input_`` with linked data. Find fields with complex data:<...> types in ``input_``. Assign an output of corresponding data object to those fields. """ from .data import Data # prevent circular import for fi...
python
def _format_output(content, typ): """Tabularize the content according to its type. Args: content (str): The content of a metric. typ (str): The type of metric -- (raw|json|tsv|htsv|csv|hcsv). Returns: str: Content in a raw or tabular format. """ if "csv" in str(typ): ...
java
public SDVariable binomial(int nTrials, double p, long... shape) { return binomial(null, nTrials, p, shape); }
java
public final List<T> toSortedList(final Comparator<? super T> comparator) { return Ordering.from(comparator).immutableSortedCopy( toCollection(Lists.<T>newArrayListWithCapacity(256))); }
java
public IfcExternalSpatialElementTypeEnum createIfcExternalSpatialElementTypeEnumFromString(EDataType eDataType, String initialValue) { IfcExternalSpatialElementTypeEnum result = IfcExternalSpatialElementTypeEnum.get(initialValue); if (result == null) throw new IllegalArgumentException( "The value '"...
java
public static void spawnEjectedItem(World world, BlockPos pos, ItemStack itemStack) { if (itemStack == null || world.isRemote) return; float rx = world.rand.nextFloat() * 0.8F + 0.1F; float ry = world.rand.nextFloat() * 0.8F + 0.1F; float rz = world.rand.nextFloat() * 0.8F + 0.1F; EntityItem entityItem ...
python
def block_until_expired(timeout): """ 阻塞当前程序运行, 直到超时 .. note: 会阻塞当前程序运行 - 如果 ``timeout大于0``, 则当作 ``计时阻塞器`` 来使用 .. code:: python @run_until(0.1) def s2(): m = 5 while m: print('s2: ', m, now()) time.sleep(...
java
public void marshall(TelemetryRecord telemetryRecord, ProtocolMarshaller protocolMarshaller) { if (telemetryRecord == null) { throw new SdkClientException("Invalid argument passed to marshall(...)"); } try { protocolMarshaller.marshall(telemetryRecord.getTimestamp(), TI...
python
def template(self): """Return a method template for this method.""" r = fapi.get_config_template(self.namespace, self.name, self.snapshot_id, self.api_url) fapi._check_response_code(r, 200) return r.json()
python
def resubmit(self, req, keyspace, req_d, retries): """ Push this request to the front of the line, just to be a jerk. """ self.log('resubmitting %s request' % (req.method,)) self.pushRequest_really(req, keyspace, req_d, retries) try: self.request_queue.pending...
python
def new_common_diceware_password(self, number_of_words=6, hint=''): """ Return a suggested password :param int number_of_words: number of words generated :param str hint: :return tuple: a suggested password and a sentence >>> GeneratePassword().new_common_diceware_passwo...
python
def code_constants(self): """ All of the constants that are used by this functions's code. """ # TODO: remove link register values return [const.value for block in self.blocks for const in block.vex.constants]
java
static double clampMetricValue(double value) { // Leave as is and let the SDK reject it if (Double.isNaN(value)) { return value; } double magnitude = Math.abs(value); if (magnitude == 0) { // Leave zero as zero return 0; } // No...
python
def log_dictionary(dictionary, msg='', logger=None, level='debug', item_prefix=' '): """ Writes a log message with key and value for each item in the dictionary. :param dictionary: the dictionary to be logged :type dictionary: dict :param name: An optional message that is logged before the...
java
public BigInteger getBigIntegerFrom(JsonValue json) { if (json.isString()) { return new BigInteger(json.asString()); } else { return new BigInteger(json.toString()); } }
java
@Override public boolean validate(Field f) throws RuleValidationException { boolean checkvalidation = true; for (Annotation annotate : f.getDeclaredAnnotations()) { RelationType eruleType = getRuleType(annotate.annotationType().getSimpleName()); if (eruleType !=...
java
private void processConversationDeliveredAt(String conversationId, int convType, long timestamp) { AVConversationHolder conversation = session.getConversationHolder(conversationId, convType); conversation.onConversationDeliveredAtEvent(timestamp); }
python
def print_class_histogram(roidbs): """ Args: roidbs (list[dict]): the same format as the output of `load_training_roidbs`. """ dataset = DetectionDataset() hist_bins = np.arange(dataset.num_classes + 1) # Histogram of ground-truth objects gt_hist = np.zeros((dataset.num_classes,), d...
java
public EtcdResult cad(String key, Map<String, String> params) throws EtcdClientException { URI uri = buildUriWithKeyAndParams(key, params); HttpDelete httpDelete = new HttpDelete(uri); return syncExecute(httpDelete, new int[] {200, 412}, 101); }
python
def _generate_examples(self, archive, validation_labels=None): """Yields examples.""" if validation_labels: # Validation split for example in self._generate_examples_validation(archive, validation_labels): yield example # Training split....
python
def probability_in(self, a, b): """ Returns the probability of a random variable falling between the given values. """ if self.mean is None: return p1 = normdist(x=a, mu=self.mean, sigma=self.standard_deviation) p2 = normdist(x=b, mu=self.mean, sigma=s...
java
public Set<T> getDependents(T element) { lock.readLock().lock(); try { Set<T> dependants = this.incomingEdges.get(element); if (dependants == null || dependants.isEmpty()) { return new HashSet<>(); } return Collections.unmodifiableSet(this.incomingEdges.get(el...
java
public VirtualNetworkLinkInner update(String resourceGroupName, String privateZoneName, String virtualNetworkLinkName, VirtualNetworkLinkInner parameters, String ifMatch) { return updateWithServiceResponseAsync(resourceGroupName, privateZoneName, virtualNetworkLinkName, parameters, ifMatch).toBlocking().last()....
python
def get_sequence_alignment_printer_objects(self, pdb_list = [], reversed = True, width = 80, line_separator = '\n'): '''Takes a list, pdb_list, of pdb names e.g. ['Model', 'Scaffold', ...] with which the object was created. Using the first element of this list as a base, get the sequence alignments ...
java
public BigInteger getBigInteger(int index) throws JSONException { Object object = this.get(index); try { return new BigInteger(object.toString()); } catch (Exception e) { throw new JSONException("JSONArray[" + index + "] could not convert to BigInteger."); } }