rem
stringlengths
0
322k
add
stringlengths
0
2.05M
context
stringlengths
8
228k
super(SSLTransportWithCert, self).__init__(host, connect_timeout):
super(SSLTransportWithCert, self).__init__(host, connect_timeout)
def __init__(self, host, connect_timeout, ssl_cert=None, ssl_key=None): super(SSLTransportWithCert, self).__init__(host, connect_timeout): self.ssl_cert = ssl_cert self.ssl_key = ssl_key
original_create_transport = create_transport
original_create_transport = transport.create_transport
def _setup_transport(self): if transport.HAVE_PY26_SSL: self.sslobj = ssl.wrap_socket(self.sock, keyfile=self.ssl_key, certfile=self.ssl_cert) self.sslobj.do_handshake() else: self.sslobj = socket.ssl(self.sock, keyfile=self.ssl_key, certfile=self.ssl_cert)
os.environ.setdefault('IRGSH_NODE_COFNIG', 'irgsh-node.conf')
os.environ.setdefault('IRGSH_NODE_CONFIG', 'irgsh-node.conf')
def main(): import amqplib_sslcert_patch amqplib_sslcert_patch.use_configured_cert() os.environ.setdefault('IRGSH_NODE_COFNIG', 'irgsh-node.conf') os.environ.setdefault('CELERY_LOADER', 'irgsh_node.loader.IrgshNodeLoader') from celery.bin import celeryd celeryd.main()
if (line[1] == "PRIVMSG") and (line[2] == CHANNEL) and (line[3][1:] == "!info"): sendchannel("Das Scherbengericht verbannt bzw. ernennt zum König, wer von %d oder mehr der Anwesenden gewählt wird." % (int(round(len(users)*VOTEQUOTA))))
if (line[1] == "PRIVMSG") and (line[2] == CHANNEL) and \ (line[3][1:] == "!info"): sendchannel("Das Scherbengericht verbannt bzw. ernennt zum \ König, wer von %d oder mehr der Anwesenden gewählt wird." % \ (int(round(len(users) * VOTEQUOTA))))
def checkTimeOut(votes): if votes[0][1] + TIMEOUT > time(): return votes # no votes have timed out elif len(votes) > 1: return checkTimeOut(votes[1:]) # oldest vote has timed out, continue checking else: return [] # no valid vote left
if (line[1] == "PRIVMSG") and (line[2] == CHANNEL) and (len(line) >= 5):
if (line[1] == "PRIVMSG") and (line[2] == CHANNEL) and \ (len(line) >= 5):
def checkTimeOut(votes): if votes[0][1] + TIMEOUT > time(): return votes # no votes have timed out elif len(votes) > 1: return checkTimeOut(votes[1:]) # oldest vote has timed out, continue checking else: return [] # no valid vote left
if user in (u for u,t in hatevotes[target]): sendchannel("Du hast bereits gegen %s abgestimmt." % (target))
if user in (u for u, t in hatevotes[target]): sendchannel("Du hast bereits gegen %s abgestimmt." % \ (target))
def checkTimeOut(votes): if votes[0][1] + TIMEOUT > time(): return votes # no votes have timed out elif len(votes) > 1: return checkTimeOut(votes[1:]) # oldest vote has timed out, continue checking else: return [] # no valid vote left
hatevotes[target].append((user,time())) difference = int(round(len(users)*VOTEQUOTA)) - len(hatevotes[target])
hatevotes[target].append((user, time())) difference = int(round(len(users) * VOTEQUOTA)) - \ len(hatevotes[target])
def checkTimeOut(votes): if votes[0][1] + TIMEOUT > time(): return votes # no votes have timed out elif len(votes) > 1: return checkTimeOut(votes[1:]) # oldest vote has timed out, continue checking else: return [] # no valid vote left
sendchannel("Stimme gegen %s gezählt. Noch %d Stimmmen nötig für Bann." % (target, difference))
sendchannel("Stimme gegen %s gezählt. Noch %d \ Stimmmen nötig für Bann." % (target, difference))
def checkTimeOut(votes): if votes[0][1] + TIMEOUT > time(): return votes # no votes have timed out elif len(votes) > 1: return checkTimeOut(votes[1:]) # oldest vote has timed out, continue checking else: return [] # no valid vote left
sendchannel("Stimme gegen %s gezählt. Zuständige Stellen sind verständigt." % (target))
sendchannel("Stimme gegen %s gezählt. \ Zuständige Stellen sind verständigt." % (target))
def checkTimeOut(votes): if votes[0][1] + TIMEOUT > time(): return votes # no votes have timed out elif len(votes) > 1: return checkTimeOut(votes[1:]) # oldest vote has timed out, continue checking else: return [] # no valid vote left
else: sendchannel("Abstimmung gegen %s anberaumt. Noch %d Stimmmen nötig für Bann." % (target, int(round(len(users)*VOTEQUOTA)) - 1)) hatevotes[target] = [(user,time())]
else: sendchannel("Abstimmung gegen %s anberaumt. Noch %d \ Stimmen nötig für Bann." % \ (target, int(round(len(users) * VOTEQUOTA)) - 1)) hatevotes[target] = [(user, time())]
def checkTimeOut(votes): if votes[0][1] + TIMEOUT > time(): return votes # no votes have timed out elif len(votes) > 1: return checkTimeOut(votes[1:]) # oldest vote has timed out, continue checking else: return [] # no valid vote left
if len(hatevotes[nickname]) >= (int(round(len(users)*VOTEQUOTA))):
if len(hatevotes[nickname]) >= \ (int(round(len(users) * VOTEQUOTA))):
def checkTimeOut(votes): if votes[0][1] + TIMEOUT > time(): return votes # no votes have timed out elif len(votes) > 1: return checkTimeOut(votes[1:]) # oldest vote has timed out, continue checking else: return [] # no valid vote left
if (command == "!für" or command == "!fuer" or command == u"!für".encode('latin_1')): if target in lovevotes.keys():
if (command == "!für" or command == "!fuer" or \ command == u"!für".encode('latin_1')): if target in lovevotes.keys():
def checkTimeOut(votes): if votes[0][1] + TIMEOUT > time(): return votes # no votes have timed out elif len(votes) > 1: return checkTimeOut(votes[1:]) # oldest vote has timed out, continue checking else: return [] # no valid vote left
if user in (u for u,t in lovevotes[target]): sendchannel("Du hast bereits für %s abgestimmt." % (target))
if user in (u for u, t in lovevotes[target]): sendchannel("Du hast bereits für %s abgestimmt." % \ (target))
def checkTimeOut(votes): if votes[0][1] + TIMEOUT > time(): return votes # no votes have timed out elif len(votes) > 1: return checkTimeOut(votes[1:]) # oldest vote has timed out, continue checking else: return [] # no valid vote left
lovevotes[target].append((user,time())) difference = int(round(len(users)*VOTEQUOTA)) - len(lovevotes[target])
lovevotes[target].append((user, time())) difference = int(round(len(users) * VOTEQUOTA)) - \ len(lovevotes[target])
def checkTimeOut(votes): if votes[0][1] + TIMEOUT > time(): return votes # no votes have timed out elif len(votes) > 1: return checkTimeOut(votes[1:]) # oldest vote has timed out, continue checking else: return [] # no valid vote left
sendchannel("Stimme für %s gezählt. Noch %d Stimmen nötig für OP." % (target, difference))
sendchannel("Stimme für %s gezählt. Noch %d \ Stimmen nötig für OP." % (target, difference))
def checkTimeOut(votes): if votes[0][1] + TIMEOUT > time(): return votes # no votes have timed out elif len(votes) > 1: return checkTimeOut(votes[1:]) # oldest vote has timed out, continue checking else: return [] # no valid vote left
sendchannel("Stimme für %s gezählt. Zuständige Stellen sind verständigt." % (target))
sendchannel("Stimme für %s gezählt. \ Zuständige Stellen sind verständigt." % (target))
def checkTimeOut(votes): if votes[0][1] + TIMEOUT > time(): return votes # no votes have timed out elif len(votes) > 1: return checkTimeOut(votes[1:]) # oldest vote has timed out, continue checking else: return [] # no valid vote left
sendchannel("Abstimmung für %s anberaumt. Noch %d Stimmmen nötig für OP." % (target, int(round(len(users)*VOTEQUOTA)) - 1)) lovevotes[target] = [(user,time())]
sendchannel("Abstimmung für %s anberaumt. Noch %d \ Stimmen nötig für OP." % \ (target, int(round(len(users) * VOTEQUOTA)) - 1)) lovevotes[target] = [(user, time())]
def checkTimeOut(votes): if votes[0][1] + TIMEOUT > time(): return votes # no votes have timed out elif len(votes) > 1: return checkTimeOut(votes[1:]) # oldest vote has timed out, continue checking else: return [] # no valid vote left
if len(lovevotes[nickname]) >= int(round(len(users)*VOTEQUOTA)):
if len(lovevotes[nickname]) >= \ int(round(len(users) * VOTEQUOTA)):
def checkTimeOut(votes): if votes[0][1] + TIMEOUT > time(): return votes # no votes have timed out elif len(votes) > 1: return checkTimeOut(votes[1:]) # oldest vote has timed out, continue checking else: return [] # no valid vote left
extended permissions. Fo
extended permissions.
def put_object(self, parent_object, connection_name, **data): """Writes the given object to the graph, connected to the given parent.
def put_wall_post(self, message, profile_id="me"): """Writes a wall post to the given profile's wall. We default to writing to the authenticated user's wall if no profile_id is specified. """ graph.put_object(profile_id, "feed", message=message) def put_comment(self, post_id, message): """Writes the given comment on ...
def delete_object(self, id): """Deletes the object with the given ID from the graph.""" self.request(id, post_args={"method": "delete"})
self.throttle = event.newValue.getAddressPanel().getThrottle()
self.addressPanel = event.newValue.getAddressPanel() self.throttle = self.addressPanel.getThrottle()
def propertyChange(self, event): self.speedTimer.stop() if (event.propertyName == "ThrottleFrame") : # Curent throttle frame changed event.oldValue.getAddressPanel().removeAddressListener(self) self.throttle = event.newValue.getAddressPanel().getThrottle() self.speedAction.setThrottle( self.throttle ) event.newValue.g...
event.newValue.getAddressPanel().addAddressListener(self)
self.addressPanel.addAddressListener(self)
def propertyChange(self, event): self.speedTimer.stop() if (event.propertyName == "ThrottleFrame") : # Curent throttle frame changed event.oldValue.getAddressPanel().removeAddressListener(self) self.throttle = event.newValue.getAddressPanel().getThrottle() self.speedAction.setThrottle( self.throttle ) event.newValue.g...
self.getContext().getCurentThrottleFrame().getAddressPanel().addAddressListener(self)
self.addressPanel=self.getContext().getCurentThrottleFrame().getAddressPanel(); self.addressPanel.addAddressListener(self)
def init(self): self.getContext().addPropertyChangeListener(self) #ThrottleFrame change self.getContext().getCurentThrottleFrame().getAddressPanel().addAddressListener(self) # change of throttle in curent frame self.throttle = self.getContext().getCurentThrottleFrame().getAddressPanel().getThrottle() # the throttle sel...
self.getContext().getCurentThrottleFrame().getAddressPanel().removeAddressListener(self)
self.addressPanel.removeAddressListener(self) self.addressPanel = None
def quit(self): self.speedTimer.stop() WiiRemoteJ.stopFind() if ((self.wiiDevice != None) and (self.wiiDevice.isConnected())): self.wiiDevice.removeWiiRemoteListener(self) self.wiiDevice.disconnect() self.wiiDevice = None self.speedAction = None self.speedTimer = None self.throttle = None self.getContext().removeProper...
turnout = turnouts.getTurnout("IT:xPA:xAPBSC:"+fmtMsg.getSource())
turnout = turnouts.getTurnout("IT:xAP:xAPBSC:"+fmtMsg.getSource())
def processTurnout(self, fmtMsg, message) : pair = fmtMsg.getNameValuePair("output.state","Name") if (pair == None) : print "No Name" name = None else : name = pair.getValue() print " Name:", name pair = fmtMsg.getNameValuePair("output.state","Location") if (pair == None) : print "No Location" location = None el...
print " create turnout IT:xPA:xAPBSC:"+fmtMsg.getSource() turnout = turnouts.provideTurnout("IT:xPA:xAPBSC:"+fmtMsg.getSource())
print " create turnout IT:xAP:xAPBSC:"+fmtMsg.getSource() turnout = turnouts.provideTurnout("IT:xAP:xAPBSC:"+fmtMsg.getSource())
def processTurnout(self, fmtMsg, message) : pair = fmtMsg.getNameValuePair("output.state","Name") if (pair == None) : print "No Name" name = None else : name = pair.getValue() print " Name:", name pair = fmtMsg.getNameValuePair("output.state","Location") if (pair == None) : print "No Location" location = None el...
print " set turnout IT:xPA:xAPBSC:"+fmtMsg.getSource()+" to", value
print " set turnout IT:xAP:xAPBSC:"+fmtMsg.getSource()+" to", value
def processTurnout(self, fmtMsg, message) : pair = fmtMsg.getNameValuePair("output.state","Name") if (pair == None) : print "No Name" name = None else : name = pair.getValue() print " Name:", name pair = fmtMsg.getNameValuePair("output.state","Location") if (pair == None) : print "No Location" location = None el...
sensor = sensors.getSensor("IS:xPA:xAPBSC:"+fmtMsg.getSource())
sensor = sensors.getSensor("IS:xAP:xAPBSC:"+fmtMsg.getSource())
def processSensor(self, fmtMsg, message) : pair = fmtMsg.getNameValuePair("input.state","Name") if (pair == None) : print "no Name" return name = pair.getValue() print " Name:", name pair = fmtMsg.getNameValuePair("input.state","Location") if (pair == None) : print "no Location" return location = pair.getValue()...
print " create sensor IS:xPA:xAPBSC:"+fmtMsg.getSource() sensor = sensors.provideSensor("IS:xPA:xAPBSC:"+fmtMsg.getSource())
print " create sensor IS:xAP:xAPBSC:"+fmtMsg.getSource() sensor = sensors.provideSensor("IS:xAP:xAPBSC:"+fmtMsg.getSource())
def processSensor(self, fmtMsg, message) : pair = fmtMsg.getNameValuePair("input.state","Name") if (pair == None) : print "no Name" return name = pair.getValue() print " Name:", name pair = fmtMsg.getNameValuePair("input.state","Location") if (pair == None) : print "no Location" return location = pair.getValue()...
print " set sensor IS:xPA:xAPBSC:"+fmtMsg.getSource()+" to ", value
print " set sensor IS:xAP:xAPBSC:"+fmtMsg.getSource()+" to ", value
def processSensor(self, fmtMsg, message) : pair = fmtMsg.getNameValuePair("input.state","Name") if (pair == None) : print "no Name" return name = pair.getValue() print " Name:", name pair = fmtMsg.getNameValuePair("input.state","Location") if (pair == None) : print "no Location" return location = pair.getValue()...
self.signalBeyondText.text = self.cvtAppearanceText(nearSignal)
self.signalBeyondText.text = self.cvtAppearanceText(farSignal)
def didWeMove(self) : #self.msgText("didWeMove start: " + self.giveBlockName(self.currentBlock) + ":" + self.giveBlockName(self.nextBlock) + "\n") if (self.currentThrottle == None) : #self.msgText("didWeMove called while currentThrottle was None\n") return #if (self.currentBlock != None) : #self.msgText("Current block:...
if (self.debugLevel >= MediumDebug) : self.msgText("looking for signal between " + self.giveBlockName(cBlock) + " and " + self.giveBlockName(nBlock) + "\n")
def findNewSpeed(self, cBlock, nBlock) : if (self.isRunning) : if (cBlock == None) : if (nBlock == None) : self.msgText("Failed to find either blocks\n") self.doHalt() else : self.msgText("Failed to find current block\n") self.doHalt() else : if (nBlock == None) : self.msgText("next block doesn't exist, treating as red...
if (self.debugLevel >= MediumDebug) : self.msgText("Found currentSignal: " + self.giveSignalName(s) + " displaying: " + self.cvtAppearanceText(s) + "\n")
def findNewSpeed(self, cBlock, nBlock) : if (self.isRunning) : if (cBlock == None) : if (nBlock == None) : self.msgText("Failed to find either blocks\n") self.doHalt() else : self.msgText("Failed to find current block\n") self.doHalt() else : if (nBlock == None) : self.msgText("next block doesn't exist, treating as red...
self.msgText("doSpeedGreenFlash: " + i.toString() + "\n")
if (self.debugLevel >= LowDebug) : self.msgText("doSpeedGreenFlash: " + i.toString() + "\n")
def doSpeedGreenFlash(self): if (self.redDelayTimer != None) : self.redDelayTimer.stop() if (self.currentThrottle != None) : i = int(self.locoSpeedGreenFlash.text) * 0.01 self.currentThrottle.setSpeedSetting(i) self.msgText("doSpeedGreenFlash: " + i.toString() + "\n") self.locoSpeed.text = self.locoSpeedGreenFlash.text...
self.msgText("doSpeedGreen: " + i.toString() + "\n")
if (self.debugLevel >= LowDebug) : self.msgText("doSpeedGreen: " + i.toString() + "\n")
def doSpeedGreen(self): if (self.redDelayTimer != None) : self.redDelayTimer.stop() if (self.currentThrottle != None) : i = int(self.locoSpeedGreen.text) * 0.01 self.currentThrottle.setSpeedSetting(i) self.msgText("doSpeedGreen: " + i.toString() + "\n") self.locoSpeed.text = self.locoSpeedGreen.text return
self.msgText("doSpeedYellowFlash: " + i.toString() + "\n")
if (self.debugLevel >= LowDebug) : self.msgText("doSpeedYellowFlash: " + i.toString() + "\n")
def doSpeedYellowFlash(self): if (self.redDelayTimer != None) : self.redDelayTimer.stop() if (self.currentThrottle != None) : i = int(self.locoSpeedYellowFlash.text) * 0.01 self.currentThrottle.setSpeedSetting(i) self.msgText("doSpeedYellowFlash: " + i.toString() + "\n") self.locoSpeed.text = self.locoSpeedYellowFlash....
self.msgText("doSpeedYellow: " + i.toString() + "\n")
if (self.debugLevel >= LowDebug) : self.msgText("doSpeedYellow: " + i.toString() + "\n")
def doSpeedYellow(self): if (self.redDelayTimer != None) : self.redDelayTimer.stop() if (self.currentThrottle != None) : i = int(self.locoSpeedYellow.text) * 0.01 self.currentThrottle.setSpeedSetting(i) self.msgText("doSpeedYellow: " + i.toString() + "\n") self.locoSpeed.text = self.locoSpeedYellow.text return
self.msgText("doSpeedRedFlash: " + i.toString() + "\n")
if (self.debugLevel >= LowDebug) : self.msgText("doSpeedRedFlash: " + i.toString() + "\n")
def doSpeedRedFlash(self): if (self.redDelayTimer != None) : self.redDelayTimer.stop() if (self.currentThrottle != None) : i = int(self.locoSpeedRedFlash.text) * 0.01 self.currentThrottle.setSpeedSetting(i) self.msgText("doSpeedRedFlash: " + i.toString() + "\n") self.locoSpeed.text = self.locoSpeedRedFlash.text return
self.msgText("doSpeedRed: " + i.toString() + "\n")
if (self.debugLevel >= LowDebug) : self.msgText("doSpeedRed: " + i.toString() + "\n")
def doSpeedRed(self): if (self.currentThrottle != None and self.currentThrottle.getSpeedSetting() != 0 and (self.redDelayTimer == None or self.redDelayTimer.isRunning() == False)) : i = int(self.locoSpeedRed.text) * 0.01 self.currentThrottle.setSpeedSetting(i) self.msgText("doSpeedRed: " + i.toString() + "\n") self.loc...
self.msgText("redDelayHandler, stopping now!\n")
if (self.debugLevel >= LowDebug) : self.msgText("redDelayHandler, stopping now!\n")
def redDelayHandler(self, event) : self.msgText("redDelayHandler, stopping now!\n") self.redDelayTimer.stop() self.doStop() return
self.msgText("doStop\n")
if (self.debugLevel >= LowDebug) : self.msgText("doStop\n")
def doStop(self): if (self.redDelayTimer != None) : self.redDelayTimer.stop() if (self.currentThrottle != None) : self.currentThrottle.setSpeedSetting(0) self.msgText("doStop\n") self.locoSpeed.text = "0" if (self.currentBlock != None) : self.blockStart.text = self.giveBlockName(self.currentBlock) if (self.stopBlock !=...
self.msgText("Shrink Display!\n")
if (self.debugLevel >= HighDebug) : self.msgText("Shrink Display!\n")
def whenShrinkButtonClicked(self, event): if (self.shrinkGrow == True) : self.msgText("Shrink Display!\n") # add text self.speedPane.setVisible(False) self.shrinkGrow = False self.fullScrollRows = self.scrollArea.getRows() self.scrollArea.setRows(self.fullScrollRows / 2) self.scriptFrame.pack() else : self.msgText(...
self.msgText("Grow Display!\n")
if (self.debugLevel >= HighDebug) : self.msgText("Grow Display!\n")
def whenShrinkButtonClicked(self, event): if (self.shrinkGrow == True) : self.msgText("Shrink Display!\n") # add text self.speedPane.setVisible(False) self.shrinkGrow = False self.fullScrollRows = self.scrollArea.getRows() self.scrollArea.setRows(self.fullScrollRows / 2) self.scriptFrame.pack() else : self.msgText(...
if (self.debugLevel >= HighDebug) : self.msgText("searching " + len(pathList).toString() + " paths from " + self.giveBlockName(cB) + "\n")
def findNextBlock(self, cB) : # look down list of getToBlockDirection for match # use 'suggestion' flag if current block doesn't have direction nB = None dirFlag = cB.getDirection() if (dirFlag == jmri.Path.NONE) : if (self.blockDirection.isSelected() == True) : dirFlag = dirFlag or jmri.Path.EAST else : dirFlag = dirF...
if (self.debugLevel >= HighDebug) : self.msgText("findNextBlock path traversable: " + self.giveBlockName(cB) + " to " + self.giveBlockName(blockTest) + " dirTest: " + jmri.Path.decodeDirection(dirTest) + ":" + dirTest.toString() + " dirFlag: " + jmri.Path.decodeDirection(dirFlag) + ":" + dirFlag.toString() + " result:...
def findNextBlock(self, cB) : # look down list of getToBlockDirection for match # use 'suggestion' flag if current block doesn't have direction nB = None dirFlag = cB.getDirection() if (dirFlag == jmri.Path.NONE) : if (self.blockDirection.isSelected() == True) : dirFlag = dirFlag or jmri.Path.EAST else : dirFlag = dirF...
self.msgText("findNextBlock Found " + self.giveBlockName(blockTest) + "\n")
if (self.debugLevel >= LowDebug) : self.msgText("findNextBlock Found " + self.giveBlockName(blockTest) + "\n")
def findNextBlock(self, cB) : # look down list of getToBlockDirection for match # use 'suggestion' flag if current block doesn't have direction nB = None dirFlag = cB.getDirection() if (dirFlag == jmri.Path.NONE) : if (self.blockDirection.isSelected() == True) : dirFlag = dirFlag or jmri.Path.EAST else : dirFlag = dirF...
else : if (self.debugLevel >= MediumDebug) : self.msgText("findNextBlock path not traversable: " + self.giveBlockName(cB) + " to " + self.giveBlockName(blockTest) + "\n")
def findNextBlock(self, cB) : # look down list of getToBlockDirection for match # use 'suggestion' flag if current block doesn't have direction nB = None dirFlag = cB.getDirection() if (dirFlag == jmri.Path.NONE) : if (self.blockDirection.isSelected() == True) : dirFlag = dirFlag or jmri.Path.EAST else : dirFlag = dirF...
self.methodPushTest = Ture
self.methodPushTest = True
def pushTest(self) : self.methodPushTest = Ture return
** version: 0.3 **
** version: this is a development version, ** ** see below for details **
def checkFile(name, comment): flag = os.path.exists(name) if not flag : print "ERROR: file %s is missing" %(name) print "ERROR: %s" %(comment) exit(2)
using PTools rev.:%s, from branch: %s, unique id: %s
using PTools revision %s, from branch %s, unique id %s
def checkFile(name, comment): flag = os.path.exists(name) if not flag : print "ERROR: file %s is missing" %(name) print "ERROR: %s" %(comment) exit(2)
flag = os.path.exists(name) if not flag : print "ERROR: file %s is missing" %(name) print "ERROR: %s" %(comment) exit(2)
flag = os.path.exists(name) if not flag : msg = "ERROR: file %s not found\n" %(name) if comment != "": msg += "ERROR: %s" %(comment) sys.exit(msg)
def checkFile(name, comment): flag = os.path.exists(name) if not flag : print "ERROR: file %s is missing" %(name) print "ERROR: %s" %(comment) exit(2)
parser = OptionParser() parser.add_option("-s", "--single", action="store_true", dest="single",default=False,help="single minimization mode")
parser = OptionParser(usage="%prog -r receptor_file -l ligand_file [-h] [-s] [-t] [--ref]") parser.add_option("-r", "--receptor", action="store", type="string", dest="receptor_name", help="name of the receptor file") parser.add_option("-l", "--ligand", action="store", type="string", dest="ligand_name", help="name of th...
def checkFile(name, comment): flag = os.path.exists(name) if not flag : print "ERROR: file %s is missing" %(name) print "ERROR: %s" %(comment) exit(2)
receptor_name=args[0] ligand_name=args[1]
def checkFile(name, comment): flag = os.path.exists(name) if not flag : print "ERROR: file %s is missing" %(name) print "ERROR: %s" %(comment) exit(2)
** version: this is a development version, ** ** see below for details **
** based on the PTools library ** ** **
def checkFile(name, comment): flag = os.path.exists(name) if not flag : print "ERROR: file %s is missing" %(name) print "ERROR: %s" %(comment) exit(2)
Attract.py using PTools revision %s, from branch %s, unique id %s
PTools revision %s from branch %s unique id %s
def checkFile(name, comment): flag = os.path.exists(name) if not flag : print "ERROR: file %s is missing" %(name) print "ERROR: %s" %(comment) exit(2)
import datetime
def checkFile(name, comment): flag = os.path.exists(name) if not flag : print "ERROR: file %s is missing" %(name) print "ERROR: %s" %(comment) exit(2)
now = datetime.datetime.now() print now,"(",now.strftime("%A %B %d %Y, %H:%M"),")"
time_start = datetime.datetime.now() print "Start time:", time_start
def checkFile(name, comment): flag = os.path.exists(name) if not flag : print "ERROR: file %s is missing" %(name) print "ERROR: %s" %(comment) exit(2)
checkFile(receptor_name, "A receptor file is needed.")
if not options.receptor_name: parser.print_help() parser.error("option -r is mandatory") checkFile(options.receptor_name, "")
def checkFile(name, comment): flag = os.path.exists(name) if not flag : print "ERROR: file %s is missing" %(name) print "ERROR: %s" %(comment) exit(2)
checkFile(ligand_name, "A ligand file is needed.")
if not options.ligand_name: parser.print_help() parser.error("option -l is mandatory") checkFile(options.ligand_name, "")
def checkFile(name, comment): flag = os.path.exists(name) if not flag : print "ERROR: file %s is missing" %(name) print "ERROR: %s" %(comment) exit(2)
checkFile("attract.inp", "A parameters file is needed.")
checkFile("attract.inp", "parameters file is required.")
def checkFile(name, comment): flag = os.path.exists(name) if not flag : print "ERROR: file %s is missing" %(name) print "ERROR: %s" %(comment) exit(2)
checkFile("aminon.par", "A forcefield file is needed.")
checkFile("aminon.par", "forcefield file is required.")
def checkFile(name, comment): flag = os.path.exists(name) if not flag : print "ERROR: file %s is missing" %(name) print "ERROR: %s" %(comment) exit(2)
rec=Rigidbody(receptor_name) lig=Rigidbody(ligand_name)
rec=Rigidbody(options.receptor_name) lig=Rigidbody(options.ligand_name)
def checkFile(name, comment): flag = os.path.exists(name) if not flag : print "ERROR: file %s is missing" %(name) print "ERROR: %s" %(comment) exit(2)
print "Receptor (fixed) %s has %d particules" %(receptor_name,rec.Size()) print "Ligand (mobile) %s has %d particules" %(ligand_name,lig.Size())
print "Reading receptor (fixed): %s with %d particules" %( options.receptor_name, rec.Size() ) print "Reading ligand (mobile): %s with %d particules" %( options.ligand_name, lig.Size() )
def checkFile(name, comment): flag = os.path.exists(name) if not flag : print "ERROR: file %s is missing" %(name) print "ERROR: %s" %(comment) exit(2)
print "using reference file: %s"%options.reffile
checkFile(options.reffile, "")
def checkFile(name, comment): flag = os.path.exists(name) if not flag : print "ERROR: file %s is missing" %(name) print "ERROR: %s" %(comment) exit(2)
print "No Calpha atom found for ligand (dna ?), I will calculate rmsd on all grains"
print "No Calpha atom found for ligand (DNA?). RMSD will be calculated on all grains"
def checkFile(name, comment): flag = os.path.exists(name) if not flag : print "ERROR: file %s is missing" %(name) print "ERROR: %s" %(comment) exit(2)
checkFile("rotation.dat", "A rotation file is needed.") checkFile("translation.dat", "A translation file is needed.\nFormer users may rename translat.dat into translation.dat.")
checkFile("rotation.dat", "rotation file is required.") checkFile("translation.dat", "translation file is required.\nFormer users can rename translat.dat into translation.dat.")
def checkFile(name, comment): flag = os.path.exists(name) if not flag : print "ERROR: file %s is missing" %(name) print "ERROR: %s" %(comment) exit(2)
print "Single mode"
print "Single mode simulation"
def checkFile(name, comment): flag = os.path.exists(name) if not flag : print "ERROR: file %s is missing" %(name) print "ERROR: %s" %(comment) exit(2)
checkFile("rotation.dat", "A rotation file is needed.") checkFile("translation.dat", "A translation file is needed.\nFormer users may rename translat.dat into translation.dat.")
checkFile("rotation.dat", "rotation file is required.") checkFile("translation.dat", "translation file is required.\nFormer users may rename translat.dat into translation.dat.")
def checkFile(name, comment): flag = os.path.exists(name) if not flag : print "ERROR: file %s is missing" %(name) print "ERROR: %s" %(comment) exit(2)
print compress_file(receptor_name) print compress_file(ligand_name)
print compress_file(options.receptor_name) print compress_file(options.ligand_name)
def checkFile(name, comment): flag = os.path.exists(name) if not flag : print "ERROR: file %s is missing" %(name) print "ERROR: %s" %(comment) exit(2)
now = datetime.datetime.now() print "Finished at: ",now.strftime("%A %B %d %Y, %H:%M")
time_end = datetime.datetime.now() print "End time:", time_end print "Elapsed time:", time_end - time_start
def checkFile(name, comment): flag = os.path.exists(name) if not flag : print "ERROR: file %s is missing" %(name) print "ERROR: %s" %(comment) exit(2)
if hasattr(self, invalidateTranslationCache):
if hasattr(self, 'invalidateTranslationCache'):
def invalidateTranslations(self, comment=''): """Marks the translation as outdated.""" translations = self.getNonCanonicalTranslations() for lang in translations.keys(): translation = translations[lang][0] translation.notifyCanonicalUpdate() if comment: cUpdate = TranslationObjectUpdate(self, translation,'invalidate', ...
self.invalidateTranslationCache()
if hasattr(self, invalidateTranslationCache): self.invalidateTranslationCache()
def invalidateTranslations(self, comment=''): """Marks the translation as outdated.""" translations = self.getNonCanonicalTranslations() for lang in translations.keys(): translation = translations[lang][0] translation.notifyCanonicalUpdate() if comment: cUpdate = TranslationObjectUpdate(self, translation,'invalidate', ...
Possible viewing environments: 1. user owns the list 2. list was shared with the user, but they do not own 3. was not shared with the user and they do not own it 1: provide full editing capabilities (let users remove indicators and share) 2: user can copy to their iLists, or print/download 3: forbidden
def indicator_list(request, indicator_list_slug): """ The public landing page for an Indicator List. Can be used for sharing iLists Possible viewing environments: 1. user owns the list 2. list was shared with the user, but they do not own 3. was not shared with the user and they do not own it 1: provide full editing...
IndicatorData.objects.all().delete()
def new_run_all(self, indicator_list=None): from django.db.utils import IntegrityError IndicatorData.objects.all().delete() seen_indicators = set() # to track which Indicators may be gone now created_indicators = set() import copy metadata_to_import = [ metadata for metadata in self.get_metadata() \ if (metadata['indi...
if (metadata['indicator_group'] != '' and metadata['display_name'] != ''
if metadata['indicator_group'] != '' and metadata['display_name'] != '' \
def new_run_all(self, indicator_list=None): from django.db.utils import IntegrityError IndicatorData.objects.all().delete() seen_indicators = set() # to track which Indicators may be gone now created_indicators = set() import copy metadata_to_import = [ metadata for metadata in self.get_metadata() \ if (metadata['indi...
for metadata in [metadata for metadata in self.get_metadata() if metadata['indicator_group'] != '' and metadata['display_name'] != '']:
print metadata_to_import for metadata in metadata_to_import:
def new_run_all(self, indicator_list=None): from django.db.utils import IntegrityError IndicatorData.objects.all().delete() seen_indicators = set() # to track which Indicators may be gone now created_indicators = set() import copy metadata_to_import = [ metadata for metadata in self.get_metadata() \ if (metadata['indi...
IndicatorData.objects.filter(indicator=indicator).delete()
indicator_def = self.prep_indicator_definition(metadata)
for indicator in Indicator.objects.all():
if indicator_list: all_indicators = Indicator.objects.filter(name__in=indicator_list) else: all_indicators = Indicator.objects.all() for indicator in all_indicators:
indicator_def = self.prep_indicator_definition(metadata)
IndicatorData.objects.filter(indicator__=indicator_list).delete()
IndicatorData.objects.filter(indicator__in=indicator_list).delete()
def _run_all(self, indicator_list=None, ignore_celery=False): from django.db.utils import IntegrityError import copy if not indicator_list: indicator_list = Indicator.objects.all()
'suppresion_threshold',
'suppression_numerator', 'suppression_denominator',
def unpublish(modeladmin, request, queryset): queryset.update(published=False)
print data_type
def insert_pregen_data(self, indicator): """ Find all rows for the indicator, and insert each """ count = 0 for pregen_part in indicator.indicatorpregenpart_set.all(): file_path = self.find_file(pregen_part) if not file_path: print "WARNING: Couldn't find a file for %s (searched for %s)" % ( indicator.name, pregen_part...
default_list_name = "%s's Indicators" % user.username
default_list_name = "%s's Indicators" % user.email
def get_or_create_default_for_user(self, user): default_list_name = "%s's Indicators" % user.username list, created = self.get_or_create(owner=user, name=default_list_name) user.get_profile().indicator_lists.add(list) return list, created
def test_celery_performance(indicator_def): """ Run an indicator three ways: 1. By itself, without celery 2. By itself, through celery 3. By itself 4 times Calculate the slowdown incurred by each method, with """ import datetime from indicators.tasks import create_indicator_data i = indicator_def() start1 = datetime...
i_def = IndicatorDef()
if indicator not in seend_indicators:
if indicator not in seen_indicators:
indicator_def = self.prep_indicator_definition(metadata)
indicator_data = self.new_generate_indicator_data(
indicator_data = new_generate_indicator_data(
indicator_def = get_dynamic_indicator_def(metadata)
time.sleep(10)
indicator_def = get_dynamic_indicator_def(metadata)
if metadata['data_type'].lower() == 'numeric':
resolved_type = None if metadata['data_type'].lower() == 'text': resolved_type = 'text' elif metadata['data_type'].lower() == 'numeric': resolved_type = 'numeric' else: try: float(value) resolved_type = 'numeric' except ValueError: resolved_type = 'text' indicator_data_kwargs['data_type'] = resolved_type if indicator_...
def generate_indicator_data(self, metadata, row): from webportal.indicators.models import IndicatorData import datahub.indicators.conversion as conversion value = row[metadata['element_name']] key_field = self.get_key_field(metadata['file_name']) indicator_data_kwargs = { 'data_type': metadata['data_type'].lower() } v...
else: indicator_data_kwargs['string'] = value
def generate_indicator_data(self, metadata, row): from webportal.indicators.models import IndicatorData import datahub.indicators.conversion as conversion value = row[metadata['element_name']] key_field = self.get_key_field(metadata['file_name']) indicator_data_kwargs = { 'data_type': metadata['data_type'].lower() } v...
if file.lower() == metadata['file_name'].lower():
if file.lower() == metadata['file_name'].lower() or file.lower() == metadata['file_name'].lower() + '.csv':
def find_file(self, metadata): file_path = None for file, path in self.get_files().iteritems(): if file.lower() == metadata['file_name'].lower(): file_path = path return file_path
======= import os import csv import sys from datahub.indicators.models import Indicator, IndicatorData from django.utils.functional import memoize from django.db import transaction key_field_cache = {} get_files_cache = {} get_variables_cache = {} def safe_strip(val): if isinstance(val, str): return val.strip() retur...
def run_all(self): print 'start' Indicator.objects.all().delete() excel_info = self.grab_xls_info() output_file = open('errors.txt', 'w') for pair in indicator_list(): try: if pair[0] in excel_info.keys(): excel_related_info = excel_info[pair[0]] i = Indicator(name = pair[0], short_label = excel_related_info[0]) #etc...
do_get_variables = memoize(do_get_variables, {}, 0)
do_get_variables = memoize(do_get_variables, get_variables_cache, 0)
def do_get_variables(): book = self.open_xsl() sheet = book.sheet_by_index(0) attr_map = [ 'keep_or_drop', 'display', 'data_type', 'min', 'max', 'name', 'dataset_tag', 'file_name', 'icon', 'source', 'time_group', 'year', 'short_label_prefix', 'short_label', 'hover_label', 'variable_definition', 'case_restrictions', 'ca...
do_get_files = memoize(do_get_files, {}, 0)
do_get_files = memoize(do_get_files, get_files_cache, 0)
def do_get_files(): files = {} for path, subpaths, subfiles in os.walk(self.directory): for filename in subfiles: files[filename] = os.path.join(path, filename) return files
files = self.get_files() for filename, path in files.iteritems(): if filename.startswith(table_name) and filename.endswith('csv'): reader = csv.reader(open(path, 'rU')) header = reader.next() return header[0] print "WARNING: Couldn't find a key field for %s" % table_name return ''
def do_get_key_field(table_name): print 'in do_get_key_field for %s' % table_name files = self.get_files() for filename, path in files.iteritems(): if filename.startswith(table_name) and filename.endswith('csv'): reader = csv.reader(open(path, 'rU')) header = reader.next() return header[0] print "WARNING: Couldn't fin...
def get_key_field(self, table_name): files = self.get_files() for filename, path in files.iteritems(): if filename.startswith(table_name) and filename.endswith('csv'): # assuming the first column is the key field reader = csv.reader(open(path, 'rU')) header = reader.next() return header[0] print "WARNING: Couldn't find...
if 'xor-circ' in src_val: print('src: ' + src_path) print('en: ' + en_src) print('xx: ' + xx_src)
def handle_tag(match): values = {} pieces = ['<img'] for attr_match in img_attr_re.finditer(match.group()): attr = attr_match.group(1) values[attr] = attr_match.group(2) if attr not in ['src', 'width', 'height']: pieces.append(attr_match.group()) if 'src' in values: src_val = values['src'] src_path = os.path.normpath(b...
for locale in os.listdir(doc_dir): locale_dir = build_path(temp_dir, 'doc', locale) if os.path.isdir(locale_dir) and locale != 'en': src_map = build_path(temp_dir, 'doc/en/map.jhm') shutil.copy(src_map, locale_dir)
def ignore_hidden(dir, files): ret = [] if ignore is None else ignore(dir, files) ret.extend([f for f in files if f.startswith('.') and f not in ret]) return ret
debug=True)
debug=False)
def get(self, bookmarklet, link_key): link = db.get(link_key) if link.bookmarklet == bookmarklet: link.delete() self.redirect(link.url) else: self.redirect('/')
n.append(['0' if s[(4 * x)] == 0 else '1' for x in range((len(s) / 4))])
n.append([1 if s[(x*4)]==s[(x*4)+1]==s[(x*4)+2]==s[(x*4)+3] else 0 for x in range(int(len(s)/4))])
def post(self): delList = [] key = self.request.params.get('k', None) now = time.time() seed = self.request.params.get('seed', int(now / 15)) tile = Tile.get(db.Key.from_path('Tiles', key)) if tile: #if it does exist, turn it into a binary 256x256 matrix n = [] row = 0 for s in png.Reader(bytes=tile.band).asRGBA()[2]: ...
n = [['1' for i in range(256)] for i in range(256)] tile = Tile(key=db.Key.from_path('Tiles', key))
n = [[1 for i in range(256)] for i in range(256)] tile = Tile(key=db.Key.from_path('Tile', key))
def post(self): delList = [] key = self.request.params.get('k', None) now = time.time() seed = self.request.params.get('seed', int(now / 15)) tile = Tile.get(db.Key.from_path('Tiles', key)) if tile: #if it does exist, turn it into a binary 256x256 matrix n = [] row = 0 for s in png.Reader(bytes=tile.band).asRGBA()[2]: ...
t = TileUpdate.get(db.Key.from_path('TileUpdates', tmpK))
t = TileUpdate.get(db.Key.from_path('TileUpdate', tmpK))
def post(self): delList = [] key = self.request.params.get('k', None) now = time.time() seed = self.request.params.get('seed', int(now / 15)) tile = Tile.get(db.Key.from_path('Tiles', key)) if tile: #if it does exist, turn it into a binary 256x256 matrix n = [] row = 0 for s in png.Reader(bytes=tile.band).asRGBA()[2]: ...
t = Tile.get(db.Key.from_path('Tiles', tmpK)) delList.append(db.Key.from_path('TileUpdates', tmpK)) orow = 0 if qt in [0, 1] else 128 ocol = 0 if qt in [0, 2] else 128 if t: nt = png.Reader(bytes=images.resize(t.band, 128, 128)).asRGBA()
t = Tile.get(db.Key.from_path('Tile', tmpK)) delList.append(db.Key.from_path('TileUpdate', tmpK)) orow = 0 if qt in [0,1] else 128 ocol = 0 if qt in [0,2] else 128 if t: tmpI = images.Image(t.band) tmpI.resize(128,128) nt = png.Reader(bytes=tmpI.execute_transforms(output_encoding=images.PNG)).asRGBA8()
def post(self): delList = [] key = self.request.params.get('k', None) now = time.time() seed = self.request.params.get('seed', int(now / 15)) tile = Tile.get(db.Key.from_path('Tiles', key)) if tile: #if it does exist, turn it into a binary 256x256 matrix n = [] row = 0 for s in png.Reader(bytes=tile.band).asRGBA()[2]: ...