repo_name
stringlengths 6
97
| path
stringlengths 3
341
| text
stringlengths 8
1.02M
|
|---|---|---|
player1537-forks/spack
|
var/spack/repos/builtin/packages/perl-mni-perllib/package.py
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class PerlMniPerllib(PerlPackage):
"""MNI Perl Library for scripting long-running scientific computations"""
homepage = "https://github.com/BIC-MNI/mni-perllib"
git = "https://github.com/BIC-MNI/mni-perllib.git"
version('develop', commit="170827f5644820b87bcb2b194494c5ebf0928149")
patch('no-stdin.patch')
depends_on('perl-getopt-tabular', type=('build', 'run'))
depends_on('perl-text-format', type=('build', 'run'))
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/shtools/package.py
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Shtools(MakefilePackage):
"""SHTOOLS - Spherical Harmonic Tools"""
homepage = "https://shtools.github.io/SHTOOLS/"
url = "https://github.com/SHTOOLS/SHTOOLS/archive/v4.5.tar.gz"
maintainers = ['eschnett']
version('4.9.1', sha256='5c22064f9daf6e9aa08cace182146993aa6b25a6ea593d92572c59f4013d53c2')
version('4.8', sha256='c36fc86810017e544abbfb12f8ddf6f101a1ac8b89856a76d7d9801ffc8dac44')
version('4.5', sha256='1975a2a2bcef8c527d321be08c13c2bc479e0d6b81c468a3203f95df59be4f89')
# Note: This package also provides Python wrappers. We do not
# install these properly yet, only the Fortran library is
# installed.
# The Makefile expects the "other" libtool, not the GNU libtool we have in
# Spack
patch('nolibtool.patch')
variant('openmp', default=True, description="Enable OpenMP support")
depends_on('blas')
depends_on('fftw')
depends_on('lapack')
depends_on('py-flake8', type='test')
def patch(self):
"""make check fix: Silence "do not use bare 'except'" in number of files"""
filter_file('ignore=', 'ignore=E722,', 'Makefile')
# Options for the Makefile
def makeopts(self, spec, prefix):
return [
"F95={0}".format(self.compiler.fc),
"F95FLAGS={0} -O3 -std=gnu -ffast-math".
format(self.compiler.fc_pic_flag),
"OPENMPFLAGS={0}".format(self.compiler.openmp_flag),
"BLAS={0}".format(spec['blas'].libs),
"FFTW={0}".format(spec['fftw'].libs),
"LAPACK={0}".format(spec['lapack'].libs),
"PREFIX={0}".format(prefix),
"PWD={0}".format(self.build_directory),
]
def build(self, spec, prefix):
with working_dir(self.build_directory):
# The 'fortran' and 'fortran-mp' targets must be built separately
make('fortran', *self.makeopts(spec, prefix))
if spec.satisfies('+openmp'):
make('fortran-mp', *self.makeopts(spec, prefix))
def install(self, spec, prefix):
with working_dir(self.build_directory):
make('install', *self.makeopts(spec, prefix))
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/iwyu/package.py
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import archspec
class Iwyu(CMakePackage):
"""include-what-you-use: A tool for use with clang to analyze #includes in
C and C++ source files
"""
homepage = "https://include-what-you-use.org"
url = "https://include-what-you-use.org/downloads/include-what-you-use-0.13.src.tar.gz"
maintainers = ['sethrj']
version('0.17', sha256='eca7c04f8b416b6385ed00e33669a7fa4693cd26cb72b522cde558828eb0c665')
version('0.16', sha256='8d6fc9b255343bc1e5ec459e39512df1d51c60e03562985e0076036119ff5a1c')
version('0.15', sha256='2bd6f2ae0d76e4a9412f468a5fa1af93d5f20bb66b9e7bf73479c31d789ac2e2')
version('0.14', sha256='43184397db57660c32e3298a6b1fd5ab82e808a1f5ab0591d6745f8d256200ef')
version('0.13', sha256='49294270aa64e8c04182369212cd919f3b3e0e47601b1f935f038c761c265bc9')
version('0.12', sha256='a5892fb0abccb820c394e4e245c00ef30fc94e4ae58a048b23f94047c0816025')
version('0.11', sha256='2d2877726c4aed9518cbb37673ffbc2b7da9c239bf8fe29432da35c1c0ec367a')
patch('iwyu-013-cmake.patch', when='@0.13:0.14')
depends_on('llvm+clang@13.0:13', when='@0.17')
depends_on('llvm+clang@12.0:12', when='@0.16')
depends_on('llvm+clang@11.0:11', when='@0.15')
depends_on('llvm+clang@10.0:10', when='@0.14')
depends_on('llvm+clang@9.0:9', when='@0.13')
depends_on('llvm+clang@8.0:8', when='@0.12')
depends_on('llvm+clang@7.0:7', when='@0.11')
# iwyu uses X86AsmParser so must have the x86 target on non-x86 arch
_arches = set(str(x.family) for x in archspec.cpu.TARGETS.values())
for _arch in _arches - set(['x86', 'x86_64']):
depends_on('llvm targets=x86', when='arch={0}:'.format(_arch))
@when('@0.14:')
def cmake_args(self):
return [self.define('CMAKE_CXX_STANDARD', 14),
self.define('CMAKE_CXX_EXTENSIONS', False)]
@run_after('install')
def link_resources(self):
# iwyu needs to find Clang's headers
# https://github.com/include-what-you-use/include-what-you-use/blob/master/README.md#how-to-install
mkdir(self.prefix.lib)
symlink(self.spec['llvm'].prefix.lib.clang, self.prefix.lib.clang)
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/gcta/package.py
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Gcta(Package):
"""GCTA (Genome-wide Complex Trait Analysis) was originally designed to
estimate the proportion of phenotypic variance explained by all genome-wide
SNPs for complex traits (the GREML method), and has subsequently extended
for many other analyses to better understand the genetic architecture of
complex traits. GCTA currently supports the following analyses."""
homepage = "https://cnsgenomics.com/software/gcta/#Overview"
url = "http://cnsgenomics.com/software/gcta/gcta_1.91.2beta.zip"
version('1.91.2beta_mac', 'ce0882ad35dd9474ffe40911da369274700af1ecb9916c0a355b7bad14850234')
version('1.91.2beta', '192efb767be1c7ca9c2dac5d2c2317a97c7a9db1f801168d19ad2a51b98d9b10', preferred=True)
conflicts('@1.91.2beta', when='platform=darwin')
conflicts('@1.91.2beta_mac', when='platform=linux')
def install(self, spec, prefix):
mkdirp(prefix.bin)
install('gcta64', join_path(prefix.bin, 'gcta64'))
set_executable(join_path(prefix.bin, 'gcta64'))
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/py-azure-storage-common/package.py
|
<gh_stars>10-100
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
class PyAzureStorageCommon(PythonPackage):
"""Microsoft Azure Storage Common Client Library for Python."""
homepage = "https://github.com/Azure/azure-storage-python"
pypi = "azure-storage-common/azure-storage-common-2.1.0.tar.gz"
version('2.1.0', sha256='ccedef5c67227bc4d6670ffd37cec18fb529a1b7c3a5e53e4096eb0cf23dc73f')
version('1.4.2', sha256='4ec87c7537d457ec95252e0e46477e2c1ccf33774ffefd05d8544682cb0ae401')
depends_on('py-setuptools', type='build')
depends_on('py-azure-common@1.1.5:', type=('build', 'run'))
depends_on('py-cryptography', type=('build', 'run'))
depends_on('py-python-dateutil', type=('build', 'run'))
depends_on('py-requests', type=('build', 'run'))
depends_on('py-azure-storage-nspkg', when='^python@:2', type=('build', 'run'))
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/r-ini/package.py
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RIni(RPackage):
"""Read and Write '.ini' Files.
Parse simple '.ini' configuration files to an structured list. Users can
manipulate this resulting list with lapply() functions. This same
structured list can be used to write back to file after modifications."""
cran = "ini"
version('0.3.1', sha256='7b191a54019c8c52d6c2211c14878c95564154ec4865f57007953742868cd813')
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/pixz/package.py
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Pixz(AutotoolsPackage):
"""Pixz (pronounced pixie) is a parallel, indexing version of xz. """
homepage = "https://www.github.com/vasi/pixz"
url = "https://github.com/vasi/pixz/releases/download/v1.0.6/pixz-1.0.6.tar.xz"
version('1.0.7', sha256='e5e32c6eb0bf112b98e74a5da8fb63b9f2cae71800f599d97ce540e150c8ddc5')
version('1.0.6', sha256='02c50746b134fa1b1aae41fcc314d7c6f1919b3d48bcdea01bf11769f83f72e8')
depends_on('xz')
depends_on('libarchive')
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/xsd/package.py
|
<reponame>player1537-forks/spack<filename>var/spack/repos/builtin/packages/xsd/package.py<gh_stars>10-100
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Xsd(MakefilePackage):
"""CodeSynthesis XSD is an open-source, cross-platform W3C XML Schema
to C++ data binding compiler. It support in-memory and event-driven XML
processing models and is available for a wide range of C++ compilers
and platforms."""
homepage = "https://www.codesynthesis.com"
url = "https://www.codesynthesis.com/download/xsd/4.0/xsd-4.0.0+dep.tar.bz2"
version('4.0.0', sha256='eca52a9c8f52cdbe2ae4e364e4a909503493a0d51ea388fc6c9734565a859817')
depends_on('xerces-c')
depends_on('libtool', type='build')
patch(
'https://git.codesynthesis.com/cgit/libxsd-frontend/libxsd-frontend/patch/?id=5029f8665190879285787a9dcdaf5f997cadd2e2',
sha256='d57e0aed8784d2b947983209b6513c81ac593c9936c3d7b809b4cd60d4c28607',
working_dir='libxsd-frontend'
)
def install(self, spec, prefix):
make('install', 'install_prefix=' + prefix)
def setup_build_environment(self, env):
xercesc_lib_flags = self.spec['xerces-c'].libs.search_flags
env.append_flags('LDFLAGS', xercesc_lib_flags)
def url_for_version(self, version):
url = "https://www.codesynthesis.com/download/xsd/{0}/xsd-{1}+dep.tar.bz2"
return url.format(version.up_to(2), version)
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/ruby-gnuplot/package.py
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
class RubyGnuplot(RubyPackage):
"""Utility library to aid in interacting with gnuplot from ruby"""
homepage = "https://github.com/rdp/ruby_gnuplot"
url = "https://rubygems.org/downloads/gnuplot-2.6.2.gem"
# Source code is available at https://github.com/rdp/ruby_gnuplot
# but release tarballs are not available, download gem instead
version('2.6.2', sha256='d2c28d4a55867ef6f0a5725ce157581917b4d27417bc3767c7c643a828416bb3', expand=False)
depends_on('gnuplot+X')
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/elk/package.py
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Elk(MakefilePackage):
"""An all-electron full-potential linearised augmented-plane wave
(FP-LAPW) code with many advanced features."""
homepage = 'https://elk.sourceforge.io/'
url = 'https://sourceforge.net/projects/elk/files/elk-3.3.17.tgz'
version('7.2.42', sha256='73f03776dbf9b2147bfcc5b7c062af5befa0944608f6fc4b6a1e590615400fc6')
version('7.1.14', sha256='7c2ff30f4b1d72d5dc116de9d70761f2c206700c69d85dd82a17a5a6374453d2')
version('7.0.12', sha256='9995387c681d0e5a9bd52cb274530b23c0370468b6be86f6c90a6ec445cb8a01')
version('3.3.17', sha256='c9b87ae4ef367ed43afc2d43eb961745668e40670995e8e24c13db41b7e85d73', deprecated=True)
# what linear algebra packages to use? the choices are
# internal - use internal libraries
# generic - use spack-provided blas and lapack
# openblas - use openblas specifically, with special support for multithreading.
# mkl - use mkl specifically, with special support for multithreading
# should be used with fft=mkl
# blis - use internal lapack and blas implementation from blis
variant('linalg', default='internal', multi=False,
description='Build with custom BLAS library',
values=('internal', 'generic', 'openblas', 'mkl', 'blis'))
# what FFT package to use? The choices are
# internal - use internal library
# fftw - fftw3 with special code
# mkl - use mklr with fft code
# should be used with linalg=mkls
variant('fft', default='internal', multi=False,
description='Build with custom FFT library',
values=('internal', 'fftw', 'mkl'))
# check that if fft=mkl then linalg=mkl and vice versa.
conflicts('linalg=mkl', when='fft=fftw')
conflicts('linalg=mkl', when='fft=internal')
conflicts('linalg=blis', when='@:3')
conflicts('fft=mkl', when='linalg=internal')
conflicts('fft=mkl', when='linalg=generic')
conflicts('fft=mkl', when='linalg=openblas')
conflicts('fft=mkl', when='linalg=blis')
variant('mpi', default=True,
description='Enable MPI parallelism')
variant('openmp', default=True,
description='Enable OpenMP support')
variant('libxc', default=True,
description='Link to Libxc functional library')
variant('w90', default=False,
description='wannier90 support, requires wannier90 library')
depends_on('blas', when='linalg=generic')
depends_on('lapack', when='linalg=generic')
depends_on('mkl', when='linalg=mkl')
depends_on('mkl threads=openmp', when='linalg=mkl +openmp')
depends_on('openblas', when='linalg=openblas')
depends_on('openblas threads=openmp', when='linalg=openblas +openmp')
depends_on('blis', when='linalg=blis')
depends_on('blis threads=openmp', when='linalg=blis +openmp')
depends_on('fftw', when='fft=fftw')
depends_on('fftw +openmp', when='fft=fftw +openmp')
depends_on('mkl', when='fft=mkl')
depends_on('mpi@2:', when='+mpi')
depends_on('libxc@5:', when='@7:+libxc')
depends_on('libxc@:3', when='@:3+libxc')
depends_on('wannier90', when='+w90')
# Cannot be built in parallel
parallel = False
def edit(self, spec, prefix):
# Dictionary of configuration options with default values assigned
config = {
'MAKE': 'make',
'AR': 'ar',
'LIB_LPK': 'lapack.a blas.a',
'LIB_FFT': 'fftlib.a',
'SRC_MPI': 'mpi_stub.f90',
'SRC_MKL': 'mkl_stub.f90',
'SRC_OBLAS': 'oblas_stub.f90',
'SRC_OMP': 'omp_stub.f90',
'SRC_BLIS': 'blis_stub.f90',
'SRC_libxc': 'libxcifc_stub.f90',
'SRC_FFT': 'zfftifc.f90',
'SRC_W90S': 'w90_stub.f90',
'F90': spack_fc,
'F77': spack_f77
}
# Compiler-specific flags
flags = ''
if self.compiler.name == 'intel':
flags = '-O3 -ip -unroll -no-prec-div'
elif self.compiler.name == 'gcc':
flags = '-O3 -ffast-math -funroll-loops'
elif self.compiler.name == 'pgi':
flags = '-O3 -lpthread'
elif self.compiler.name == 'g95':
flags = '-O3 -fno-second-underscore'
elif self.compiler.name == 'nag':
flags = '-O4 -kind=byte -dusty -dcfuns'
elif self.compiler.name == 'xl':
flags = '-O3'
config['F90_OPTS'] = flags
config['F77_OPTS'] = flags
if '+mpi' in spec:
config['F90'] = spec['mpi'].mpifc
config['F77'] = spec['mpi'].mpif77
config['SRC_MPI'] = ' '
# OpenMP support
if '+openmp' in spec:
config['F90_OPTS'] += ' ' + self.compiler.openmp_flag
config['F77_OPTS'] += ' ' + self.compiler.openmp_flag
config['SRC_OMP'] = ' '
# BLAS/LAPACK support
# Note: openblas must be compiled with OpenMP support
# if the +openmp variant is chosen
if 'linalg=generic' in spec:
blas = spec['blas'].libs.joined()
lapack = spec['lapack'].libs.joined()
config['LIB_LPK'] = ' '.join([lapack, blas])
if 'linalg=openblas' in spec:
config['LIB_LPK'] = spec['openblas'].libs.ld_flags
config['SRC_OBLAS'] = ' '
if 'linalg=mkl' in spec:
config['LIB_LPK'] = spec['mkl'].libs.ld_flags
config['SRC_MKL'] = ' '
if 'linalg=blis' in spec:
config['LIB_LPK'] = ' '.join(['lapack.a ', spec['blis'].libs.ld_flags])
config['SRC_BLIS'] = ' '
# FFT
if 'fft=fftw' in spec:
config['LIB_FFT'] = spec['fftw'].libs.ld_flags
config['SRC_FFT'] = 'zfftifc_fftw.f90'
if 'fftw=mkl' in spec:
config['LIB_FFT'] = spec['mkl'].libs.ld_flags
config['SRC_FFT'] = ' '
# MPI support
if '+mpi' in spec:
config['F90'] = spec['mpi'].mpifc
config['F77'] = spec['mpi'].mpif77
else:
config['F90'] = spack_fc
config['F77'] = spack_f77
config['SRC_MPI'] = 'mpi_stub.f90'
# OpenMP support
if '+openmp' in spec:
config['F90_OPTS'] += ' ' + self.compiler.openmp_flag
config['F77_OPTS'] += ' ' + self.compiler.openmp_flag
config['SRC_OMP'] = ' '
# Libxc support
if '+libxc' in spec:
config['LIB_libxc'] = ' '.join([
join_path(spec['libxc'].prefix.lib, 'libxcf90.so'),
join_path(spec['libxc'].prefix.lib, 'libxc.so')
])
if self.spec.satisfies('@7:'):
config['SRC_libxc'] = 'libxcf90.f90 libxcifc.f90'
else:
config['SRC_libxc'] = 'libxc_funcs.f90 libxc.f90 libxcifc.f90'
# Write configuration options to include file
with open('make.inc', 'w') as inc:
for key in config:
inc.write('{0} = {1}\n'.format(key, config[key]))
def install(self, spec, prefix):
# The Elk Makefile does not provide an install target
mkdir(prefix.bin)
install('src/elk', prefix.bin)
install('src/eos/eos', prefix.bin)
install('src/spacegroup/spacegroup', prefix.bin)
install_tree('examples', join_path(prefix, 'examples'))
install_tree('species', join_path(prefix, 'species'))
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/nfft/package.py
|
<reponame>player1537-forks/spack<filename>var/spack/repos/builtin/packages/nfft/package.py
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Nfft(AutotoolsPackage):
"""NFFT is a C subroutine library for computing the nonequispaced discrete
Fourier transform (NDFT) in one or more dimensions, of arbitrary input
size, and of complex data."""
homepage = "https://www-user.tu-chemnitz.de/~potts/nfft"
url = "https://github.com/NFFT/nfft/releases/download/3.4.1/nfft-3.4.1.tar.gz"
version('3.4.1', sha256='1cf6060eec0afabbbba323929d8222397a77fa8661ca74927932499db26b4aaf')
version('3.3.2', sha256='9dcebd905a82c4f0a339d0d5e666b68c507169d9173b66d5ac588aae5d50b57c')
depends_on('fftw')
def configure(self, spec, prefix):
options = ['--prefix={0}'.format(prefix)]
configure = Executable('../configure')
if '+double' in spec['fftw']:
with working_dir('double', create=True):
configure(*options)
if '+float' in spec['fftw']:
with working_dir('float', create=True):
configure('--enable-float', *options)
if '+long_double' in spec['fftw']:
with working_dir('long-double', create=True):
configure('--enable-long-double', *options)
def build(self, spec, prefix):
if '+double' in spec['fftw']:
with working_dir('double'):
make()
if '+float' in spec['fftw']:
with working_dir('float'):
make()
if '+long_double' in spec['fftw']:
with working_dir('long-double'):
make()
def check(self):
spec = self.spec
if '+double' in spec['fftw']:
with working_dir('double'):
make("check")
if '+float' in spec['fftw']:
with working_dir('float'):
make("check")
if '+long_double' in spec['fftw']:
with working_dir('long-double'):
make("check")
def install(self, spec, prefix):
if '+double' in spec['fftw']:
with working_dir('double'):
make("install")
if '+float' in spec['fftw']:
with working_dir('float'):
make("install")
if '+long_double' in spec['fftw']:
with working_dir('long-double'):
make("install")
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/py-colorlog/package.py
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class PyColorlog(PythonPackage):
"""A colored formatter for the python logging module"""
homepage = "https://github.com/borntyping/python-colorlog"
pypi = "colorlog/colorlog-4.0.2.tar.gz"
version('4.0.2', sha256='3cf31b25cbc8f86ec01fef582ef3b840950dea414084ed19ab922c8b493f9b42')
version('3.1.4', sha256='418db638c9577f37f0fae4914074f395847a728158a011be2a193ac491b9779d')
depends_on('py-setuptools', type='build')
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/optional-lite/package.py
|
<gh_stars>10-100
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from shutil import copytree
from spack import *
class OptionalLite(CMakePackage):
"""
A single-file header-only version of a C++17-like optional, a nullable
object for C++98, C++11 and later.
"""
homepage = "https://github.com/martinmoene/optional-lite"
url = "https://github.com/martinmoene/optional-lite/archive/v3.0.0.tar.gz"
version('3.2.0', sha256='069c92f6404878588be761d609b917a111b0231633a91f7f908288fc77eb24c8')
version('3.1.1', sha256='b61fe644b9f77d7cc1c555b3e40e973b135bf2c0350e5fa67bc6f379d9fc3158')
version('3.1.0', sha256='66ca0d923e77c3f2a792ef3871e9ddbacf5fac2bfd6b8743df9c9c5814644718')
version('3.0.0', sha256='36ae58512c478610647978811f0f4dbe105880372bd7ed39417314d50a27254e')
version('2.3.0', sha256='8fe46216147234b172c6a5b182726834afc44dfdca1e976a264d6f96eb183916')
version('2.2.0', sha256='9ce1bb021de42f804f8d17ed30b79fc98296122bec8db60492104978cd282fa2')
version('2.0.0', sha256='e8d803cbc7be241df41a9ab267b525b7941df09747cd5a7deb55f863bd8a4e8d')
version('1.0.3', sha256='7a2fb0fe20d61d091f6730237add9bab58bc0df1288cb96f3e8a61b859539067')
def cmake_args(self):
return [
"-DOPTIONAL_LITE_OPT_BUILD_TESTS=%s"
% ("ON" if self.run_tests else "OFF"),
"-DOPTIONAL_LITE_OPT_BUILD_EXAMPLES=OFF"
]
# Pre-3.2.0 install was simply a copytree on the includes
@when("@:3.1")
def cmake(self, spec, prefix):
pass
@when("@:3.1")
def build(self, spec, prefix):
pass
@when("@:3.1")
def install(self, spec, prefix):
copytree('include', prefix.include)
@when("@:3.1")
def check(self):
pass
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/r-blob/package.py
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RBlob(RPackage):
"""A Simple S3 Class for Representing Vectors of Binary Data ('BLOBS').
R's raw vector is useful for storing a single binary object. What if you
want to put a vector of them in a data frame? The blob package provides the
blob object, a list of raw vectors, suitable for use as a column in data
frame."""
cran = "blob"
version('1.2.2', sha256='4976053c65994c769a4c22b4553bea0bd9c623b3b991dbaf023d2a164770c7fa')
version('1.2.1', sha256='ef54bc7a9646c1b73f4d2f60c869b4f1940bc3505874175114297ad7772d8bea')
version('1.2.0', sha256='1af1cfa28607bc0e2f1f01598a00a7d5d1385ef160a9e79e568f30f56538e023')
version('1.1.0', sha256='16d6603df3ddba177f0ac4d9469c938f89131c4bf8834345db838defd9ffea16')
depends_on('r-rlang', type=('build', 'run'), when='@1.2.0:')
depends_on('r-vctrs@0.2.0:', type=('build', 'run'), when='@1.2.0:')
depends_on('r-vctrs@0.2.1:', type=('build', 'run'), when='@1.2.1:')
depends_on('r-prettyunits', type=('build', 'run'), when='@1.2.0')
depends_on('r-tibble', type=('build', 'run'), when='@:1.1.0')
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/flatcc/package.py
|
<filename>var/spack/repos/builtin/packages/flatcc/package.py
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Flatcc(CMakePackage):
"""FlatBuffers C Compiler (flatcc), a memory-efficient serialization
library, is implemented as a standalone tool instead of extending Googles
flatc compiler in order to have a pure portable C library implementation of
the schema compiler that is designed to fail graciously on abusive input in
long running processes. It is also believed a C version may help provide
schema parsing to other language interfaces that find interfacing with C
easier than C++."""
homepage = "https://github.com/dvidelabs/flatcc"
url = "https://github.com/dvidelabs/flatcc/archive/v0.5.3.tar.gz"
git = "https://github.com/dvidelabs/flatcc.git"
version('0.5.3', sha256='d7519a97569ebdc9d12b162be0f9861fdc2724244f68595264a411ac48e4e983')
version('0.5.2', sha256='02dac93d3daf8d0a290aa8711a9b8a53f047436ec5331adb1972389061ec6615')
version('0.5.1', sha256='8c4560ca32e3c555716d9363bed469e2c60e0f443ec32bc08e7abfe681e25ca9')
version('0.5.0', sha256='ef97a1c983b6d3a08572af535643600d03a6ff422f64b3dfa380a7193630695c')
version('0.4.3', sha256='c0e9e40ddf90caa0cfefc3f3ce73713e6b9ac5eba4b2e946ae20dee0a559f82e')
version('0.4.2', sha256='2e42e5ed6ee152de73ce1f32f2e96d2ebd77feeef8c1979fc1d8578941d07ab4')
version('0.4.1', sha256='de9f668e5555b24c0885f8dc4f4098cc8065c1f428f8209097624035aee487df')
version('master', branch='master')
variant('shared', default=True, description='Build shared libs')
depends_on('cmake@2.8:', type='build')
def cmake_args(self):
# Spack handles CMAKE_INSTALL_PREFIX and CMAKE_BUILD_TYPE automatically
spec = self.spec
args = []
# allow flatcc to be built with more compilers
args.append('-DFLATCC_ALLOW_WERROR=OFF')
if '+shared' in spec:
args.append('-DBUILD_SHARED_LIBS=ON')
args.append('-DFLATCC_INSTALL=ON')
else:
args.append('-DBUILD_SHARED_LIBS=OFF')
args.append('-DFLATCC_INSTALL=OFF')
return args
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/guacamole-server/package.py
|
<filename>var/spack/repos/builtin/packages/guacamole-server/package.py
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class GuacamoleServer(AutotoolsPackage):
"""The guacamole-server package is a set of software which forms the
basis of the Guacamole stack. It consists of guacd, libguac, and
several protocol support libraries."""
homepage = "https://guacamole.apache.org/"
url = "https://github.com/apache/guacamole-server/archive/1.1.0.tar.gz"
version('1.1.0', sha256='d0f0c66ebfa7a4fd6689ae5240f21797b5177945a042388b691b15b8bd5c81a8')
depends_on('autoconf', type='build')
depends_on('automake', type='build')
depends_on('libtool', type='build')
depends_on('m4', type='build')
depends_on('cairo')
depends_on('libjpeg')
depends_on('libpng')
depends_on('uuid')
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/r-checkpoint/package.py
|
<filename>var/spack/repos/builtin/packages/r-checkpoint/package.py
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RCheckpoint(RPackage):
"""Install Packages from Snapshots on the Checkpoint Server for
Reproducibility.
The goal of checkpoint is to solve the problem of package reproducibility
in R. Specifically, checkpoint allows you to install packages as they
existed on CRAN on a specific snapshot date as if you had a CRAN time
machine. To achieve reproducibility, the checkpoint() function installs the
packages required or called by your project and scripts to a local library
exactly as they existed at the specified point in time. Only those packages
are available to your project, thereby avoiding any package updates that
came later and may have altered your results. In this way, anyone using
checkpoint's checkpoint() can ensure the reproducibility of your scripts or
projects at any time. To create the snapshot archives, once a day (at
midnight UTC) Microsoft refreshes the Austria CRAN mirror on the "Microsoft
R Archived Network" server (<https://mran.microsoft.com/>). Immediately
after completion of the rsync mirror process, the process takes a snapshot,
thus creating the archive. Snapshot archives exist starting from
2014-09-17."""
cran = "checkpoint"
version('1.0.2', sha256='a80390d834534e908058a597a2a5ee60a111023e76f13f370949963582dd07a5')
version('1.0.1', sha256='8542029395b7d557c1b39423326611f408788fcd02f5cbeb5ed252f368f8dcd2')
version('1.0.0', sha256='d36146093763ca29e0296729399b96e0f2e7764745283d6cea1066a96fa085a7')
version('0.4.10', sha256='7362ae9703763fe4652d0b592cd913ce506f072a18e5cf5970d08d7cdf4d126a')
version('0.4.6', sha256='fd1a5edb5cb1a40d7ed26bb196de566110fe2ef62e70b4e947c003576a03ebb2')
version('0.4.3', sha256='c3e862f89f8838183d6028f7ed13683aec562e6dab77ad4b6a5e24ec653cfb64')
version('0.3.15', sha256='09f1feeb2b5b8b409a2e16a9185827b8da5e555f1aa84442a287f15e452beed7')
depends_on('r@3.0.0:', type=('build', 'run'))
depends_on('r@3.3.0:', type=('build', 'run'), when='@1.0.0:')
depends_on('r-jsonlite', type=('build', 'run'), when='@1.0.0:')
depends_on('r-yaml', type=('build', 'run'), when='@1.0.0:')
depends_on('r-withr', type=('build', 'run'), when='@1.0.0:')
depends_on('r-pkgdepends', type=('build', 'run'), when='@1.0.0:')
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/r-statnet-common/package.py
|
<reponame>player1537-forks/spack<filename>var/spack/repos/builtin/packages/r-statnet-common/package.py<gh_stars>10-100
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RStatnetCommon(RPackage):
"""Common R Scripts and Utilities Used by the Statnet Project Software.
Non-statistical utilities used by the software developed by the Statnet
Project. They may also be of use to others."""
cran = "statnet.common"
version('4.5.0', sha256='3cdb23db86f3080462f15e29bcf3e941590bc17ea719993b301199b22d6f882f')
version('4.4.1', sha256='4ecf2b84718d7fb60f196215b4cf6f52cd6b26cc9148a6da6981b26e885509fd')
version('4.3.0', sha256='834a3359eac967df0420eee416ae4983e3b502a3de56bb24f494a7ca4104e959')
version('4.2.0', sha256='1176c3303436ebe858d02979cf0a0c33e4e2d1f3637516b4761d573ccd132461')
version('3.3.0', sha256='d714c4e7b0cbf71b7a628af443f5be530e74ad1e21f6b04f1b1087f6d7e40fa4')
depends_on('r@3.5:', type=('build', 'run'), when='@4.2.0:')
depends_on('r-coda', type=('build', 'run'), when='@4.1.2:')
depends_on('r-rle', type=('build', 'run'), when='@4.4.1')
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/r-gdata/package.py
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RGdata(RPackage):
"""Various R Programming Tools for Data Manipulation.
Various R programming tools for data manipulation, including:
[1] medical unit conversions ('ConvertMedUnits', 'MedUnits'),
[2] combining objects ('bindData', 'cbindX', 'combine', 'interleave'),
[3] character vector operations ('centerText', 'startsWith', 'trim'),
[4] factor manipulation ('levels', 'reorder.factor', 'mapLevels'),
[5] obtaining information about R objects ('object.size', 'elem', 'env',
'humanReadable', 'is.what', 'll', 'keep', 'ls.funs', 'Args','nPairs',
'nobs'),
[6] manipulating MS-Excel formatted files ('read.xls',
'installXLSXsupport', 'sheetCount', 'xlsFormats'),
[7] generating fixed-width format files ('write.fwf'),
[8] extricating components of date & time objects ('getYear', 'getMonth',
'getDay', 'getHour', 'getMin', 'getSec'),
[9] operations on columns of data frames ('matchcols', 'rename.vars'),
[10] matrix operations ('unmatrix', 'upperTriangle', 'lowerTriangle'),
[11] operations on vectors ('case', 'unknownToNA', 'duplicated2',
'trimSum'),
[12] operations on data frames ('frameApply', 'wideByFactor'),
[13] value of last evaluated expression ('ans'), and
[14] wrapper for 'sample' that ensures consistent behavior for both scalar
and vector arguments ('resample')."""
cran = "gdata"
version('2.18.0', sha256='4b287f59f5bbf5fcbf18db16477852faac4a605b10c5284c46b93fa6e9918d7f')
version('2.17.0', sha256='8097ec0e4868f6bf746f821cff7842f696e874bb3a84f1b2aa977ecd961c3e4e')
depends_on('r@2.3.0:', type=('build', 'run'))
depends_on('r-gtools', type=('build', 'run'))
depends_on('perl@5.10.0:')
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/py-tern/package.py
|
<reponame>player1537-forks/spack
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class PyTern(PythonPackage):
"""
Tern is a software package inspection tool that can create a Software Bill
of Materials (SBoM) for containers.
"""
pypi = "tern/tern-2.8.0.tar.gz"
git = "https://github.com/tern-tools/tern.git"
version('main', branch='main')
depends_on('py-setuptools', type='build')
depends_on('py-wheel', type='build')
depends_on('py-pip', type='build')
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/tauola/package.py
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Tauola(AutotoolsPackage):
""" Tauola is a event generator for tau decays."""
homepage = "https://tauolapp.web.cern.ch/tauolapp/"
url = "https://tauolapp.web.cern.ch/tauolapp/resources/TAUOLA.1.1.8/TAUOLA.1.1.8-LHC.tar.gz"
tags = ['hep']
version('1.1.8', sha256='3f734e8a967682869cca2c1ffebd3e055562613c40853cc81820d8b666805ed5')
variant('hepmc', default=True, description="Enable hepmc 2.x support")
variant('hepmc3', default=False, description="Enable hepmc3 support")
variant('lhapdf', default=True, description="Enable lhapdf support")
variant('cxxstd',
default='11',
values=('11', '14', '17', '20'),
multi=False,
description='Use the specified C++ standard when building.')
maintainers = ['vvolkl']
depends_on('hepmc', when='+hepmc')
depends_on('hepmc3', when='+hepmc3')
depends_on('lhapdf', when='+lhapdf')
def flag_handler(self, name, flags):
if name == 'cflags':
flags.append('-O2')
elif name == 'cxxflags':
flags.append('-O2')
flags.append('-std=c++{0}'.format(self.spec.variants['cxxstd'].value))
elif name == 'fflags':
flags.append('-O2')
return (None, None, flags)
def configure_args(self):
args = ['--with-pic']
args.extend(self.with_or_without('hepmc', 'prefix'))
args.extend(self.with_or_without('hepmc3', 'prefix'))
args.extend(self.with_or_without('lhapdf', 'prefix'))
return args
|
player1537-forks/spack
|
var/spack/repos/builtin.mock/packages/sticky-variant/package.py
|
<filename>var/spack/repos/builtin.mock/packages/sticky-variant/package.py<gh_stars>10-100
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class StickyVariant(AutotoolsPackage):
"""Package with a sticky variant and a conflict"""
homepage = "http://www.example.com"
url = "http://www.example.com/a-1.0.tar.gz"
version('1.0', '0123456789abcdef0123456789abcdef')
variant('allow-gcc', description='', default=False, sticky=True)
conflicts('%gcc', when='~allow-gcc')
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/r-rpart/package.py
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RRpart(RPackage):
"""Recursive Partitioning and Regression Trees.
Recursive partitioning for classification, regression and survival trees.
An implementation of most of the functionality of the 1984 book by Breiman,
Friedman, Olshen and Stone."""
cran = "rpart"
version('4.1.16', sha256='27ec75258a5a3459ad999f5f36760ead974930744249605bf8465f234f31425c')
version('4.1-15', sha256='2b8ebe0e9e11592debff893f93f5a44a6765abd0bd956b0eb1f70e9394cfae5c')
version('4.1-13', sha256='8e11a6552224e0fbe23a85aba95acd21a0889a3fe48277f3d345de3147c7494c')
version('4.1-11', sha256='38ab80959f59bcdd2c4c72860e8dd0deab0307668cbbf24f96014d7a2496ad98')
version('4.1-10', sha256='c5ddaed288d38118876a94c7aa5000dce0070b8d736dba12de64a9cb04dc2d85')
depends_on('r@2.15.0:', type=('build', 'run'))
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/fms/package.py
|
<reponame>player1537-forks/spack
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Fms(CMakePackage):
"""GFDL's Flexible Modeling System (FMS) is a software environment
that supports the efficient development, construction, execution,
and scientific interpretation of atmospheric, oceanic, and climate
system models."""
homepage = "https://github.com/NOAA-GFDL/FMS"
url = "https://github.com/NOAA-GFDL/FMS/archive/refs/tags/2021.02.01.tar.gz"
maintainers = ['kgerheiser', 'Hang-Lei-NOAA', 'edwardhartnett']
variant('64bit', default=True, description='64 bit?')
variant('gfs_phys', default=True, description='Use GFS Physics?')
variant('openmp', default=True, description='Use OpenMP?')
version('2021.03.01', sha256='1f70e2a57f0d01e80fceb9ca9ce9661f5c1565d0437ab67618c2c4dfea0da6e9')
depends_on('netcdf-c')
depends_on('netcdf-fortran')
def cmake_args(self):
args = [
self.define_from_variant('64BIT'),
self.define_from_variant('GFS_PHYS'),
self.define_from_variant('OPENMP')
]
args.append(self.define('CMAKE_C_COMPILER', self.spec['mpi'].mpicc))
args.append(self.define('CMAKE_CXX_COMPILER', self.spec['mpi'].mpicxx))
args.append(self.define('CMAKE_Fortran_COMPILER', self.spec['mpi'].mpifc))
return args
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/py-openmc/package.py
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class PyOpenmc(PythonPackage):
"""OpenMC is a community-developed Monte Carlo neutron and photon transport
simulation code. It is capable of performing fixed source, k-eigenvalue, and
subcritical multiplication calculations on models built using either a
constructive solid geometry or CAD representation. OpenMC supports both
continuous-energy and multigroup transport. The continuous-energy particle
interaction data is based on a native HDF5 format that can be generated from ACE
files produced by NJOY. Parallelism is enabled via a hybrid MPI and OpenMP
programming model."""
homepage = "https://docs.openmc.org/"
url = "https://github.com/openmc-dev/openmc/tarball/v0.13.0"
git = "https://github.com/openmc-dev/openmc.git"
version('develop', branch='develop')
version('master', branch='master')
version('0.13.0', commit='cff247e35785e7236d67ccf64a3401f0fc50a469', submodules=True)
version('0.12.2', commit='<KEY>', submodules=True)
version('0.12.1', commit='<KEY>', submodules=True)
version('0.12.0', commit='<KEY>', submodules=True)
version('0.11.0', sha256='19a9d8e9c3b581e9060fbd96d30f1098312d217cb5c925eb6372a5786d9175af')
variant('mpi', default=False, description='Enable MPI support')
# keep py-openmc and openmc at the same version
for ver in ['develop', 'master', '0.13.0', '0.12.2', '0.12.1', '0.12.0', '0.11.0']:
depends_on(
'openmc+mpi@{0}'.format(ver), when='@{0}+mpi'.format(ver),
type=('build', 'run')
)
depends_on(
'openmc~mpi@{0}'.format(ver), when='@{0}~mpi'.format(ver),
type=('build', 'run')
)
depends_on('git', type='build')
depends_on('python@3.6:', type=('build', 'run'), when='@0.13:')
depends_on('python@3.5:', type=('build', 'run'), when='@:0.12')
depends_on('py-cython', type='build')
depends_on('py-h5py~mpi', when='~mpi', type=('build', 'run'))
depends_on('py-h5py+mpi', when='+mpi', type=('build', 'run'))
depends_on('py-ipython', type=('build', 'run'))
depends_on('py-lxml', type=('build', 'run'))
depends_on('py-matplotlib', type=('build', 'run'))
depends_on('py-mpi4py', when='+mpi', type=('build', 'run'))
depends_on('py-numpy@1.9:', type=('build', 'run'))
depends_on('py-pandas', type=('build', 'run'))
depends_on('py-setuptools', type='build')
depends_on('py-scipy', type=('build', 'run'))
depends_on('py-uncertainties', type=('build', 'run'))
@run_after('install')
def install_lib(self):
install(join_path(self.spec['openmc'].prefix.lib, 'libopenmc.*'),
self.prefix.lib)
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/r-htmltable/package.py
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RHtmltable(RPackage):
"""Advanced Tables for Markdown/HTML.
Tables with state-of-the-art layout elements such as row spanners, column
spanners, table spanners, zebra striping, and more. While allowing advanced
layout, the underlying css-structure is simple in order to maximize
compatibility with word processors such as 'MS Word' or 'LibreOffice'. The
package also contains a few text formatting functions that help outputting
text compatible with HTML/'LaTeX'."""
cran = "htmlTable"
version('2.4.0', sha256='4ca2b5616d77cfeee8ae5ca74307b86407d478b12d1ce17ba9c447e233b89a9d')
version('2.1.0', sha256='4049339b317cbec1c8c7930e2e36cf0fc8b002516092dd270bb794d8db02f0bf')
version('1.13.1', sha256='689f32b65da6a57ad500e8d9ef3309d346401dca277c6b264a46c8d7c75884d0')
version('1.11.2', sha256='64a273b1cdf07a7c57b9031315ca665f95d78e70b4320d020f64a139278877d1')
version('1.9', sha256='5b487a7f33af77db7d987bf61f3ef2ba18bb629fe7b9802409f8b3485c603132')
depends_on('r-stringr', type=('build', 'run'))
depends_on('r-knitr@1.6:', type=('build', 'run'))
depends_on('r-magrittr@1.5:', type=('build', 'run'))
depends_on('r-checkmate', type=('build', 'run'))
depends_on('r-htmlwidgets', type=('build', 'run'))
depends_on('r-htmltools', type=('build', 'run'), when="@1.11.0:")
depends_on('r-rstudioapi@0.6:', type=('build', 'run'), when="@1.11.0:")
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/montage/package.py
|
<filename>var/spack/repos/builtin/packages/montage/package.py<gh_stars>10-100
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Montage(MakefilePackage):
"""Montage is a toolkit for assembling Flexible Image Transport System
(FITS) images into custom mosaics."""
homepage = "http://montage.ipac.caltech.edu/"
url = "http://montage.ipac.caltech.edu/download/Montage_v6.0.tar.gz"
version('6.0', sha256='1f540a7389d30fcf9f8cd9897617cc68b19350fbcde97c4d1cdc5634de1992c6')
depends_on('freetype')
depends_on('bzip2')
depends_on('libpng')
def install(self, spec, prefix):
# not using autotools, just builds bin and lib in the source directory
mkdirp(prefix.bin, prefix.lib)
install_tree('bin', prefix.bin)
install_tree('lib', prefix.lib)
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/routino/package.py
|
<reponame>player1537-forks/spack
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Routino(MakefilePackage):
"""Routino is an application for finding a route between two points using
the dataset of topographical information collected by
https://www.OpenStreetMap.org/."""
homepage = "https://www.routino.org"
url = "https://www.routino.org/download/routino-3.2.tgz"
version('3.2', sha256='e2a431eaffbafab630835966d342e4ae25d5edb94c8ed419200e1ffb50bc7552')
depends_on('zlib')
depends_on('bzip2')
def edit(self, spec, prefix):
makefile = FileFilter('Makefile.conf')
makefile.filter('prefix=.*', 'prefix={0}'.format(prefix))
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/lmbench/package.py
|
<reponame>player1537-forks/spack
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Lmbench(MakefilePackage):
"""lmbench is a suite of simple, portable, ANSI/C microbenchmarks for
UNIX/POSIX. In general, it measures two key features: latency and
bandwidth. lmbench is intended to give system developers insight into
basic costs of key operations."""
homepage = "http://lmbench.sourceforge.net/"
git = "https://github.com/intel/lmbench.git"
version('master', branch='master')
depends_on('libtirpc')
patch('fix_results_path_for_aarch64.patch', sha256='2af57abc9058c56b6dd0697bb01a98902230bef92b117017e318faba148eef60', when='target=aarch64:')
def setup_build_environment(self, env):
env.prepend_path('CPATH', self.spec['libtirpc'].prefix.include.tirpc)
env.append_flags('LDFLAGS', '-ltirpc')
def build(self, spec, prefix):
make('build')
def install(self, spec, prefix):
install_tree('.', prefix)
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/graphblast/package.py
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Graphblast(MakefilePackage, CudaPackage):
"""High-Performance Linear Algebra-based Graph Primitives on GPUs"""
homepage = "https://github.com/gunrock/graphblast"
git = "https://github.com/gunrock/graphblast.git"
version('master', submodules=True)
version('2020-05-07', submodules=True, commit='<PASSWORD>', preferred=True)
variant('cuda', default=True, description="Build with Cuda support")
depends_on('boost +program_options')
# This package is confirmed to compile with:
# gcc@:5.4.0,7.5.0 , boost@1.58.0:1.60.0 , cuda@9:
# TODO: the package doesn't compile as CMakePackage
# once that is fixed it should be converted to a CMakePackage type.
conflicts('cuda_arch=none', when='+cuda',
msg='Must specify CUDA compute capabilities of your GPU. \
See "spack info graphblast"')
def install(self, spec, prefix):
install_tree(self.build_directory, self.prefix)
def patch(self):
cuda_arch_list = self.spec.variants['cuda_arch'].value
arches = 'ARCH = '
for i in cuda_arch_list:
arches = arches +\
' -gencode arch=compute_{0},code=compute_{0}'.format(i)
makefile = FileFilter('common.mk')
makefile.filter(r'^ARCH =.*', arches)
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/r-gh/package.py
|
<reponame>player1537-forks/spack
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RGh(RPackage):
"""'GitHub' 'API'.
Minimal client to access the 'GitHub' 'API'."""
cran = "gh"
version('1.3.0', sha256='a44039054e8ca56496f2d9c7a10cdadf4a7383bc91086e768ba7e7f1fbcaed1c')
version('1.2.0', sha256='2988440ed2ba4b241c8ffbafbfdad29493574980a9aeba210521dadda91f7eff')
version('1.1.0', sha256='de9faf383c3fe5e87a75391d82cf71b1331b3c80cd00c4203146a303825d89ad')
version('1.0.1', sha256='f3c02b16637ae390c3599265852d94b3de3ef585818b260d00e7812595b391d2')
depends_on('r-cli', type=('build', 'run'), when='@1.1.0:')
depends_on('r-cli@2.0.1:', type=('build', 'run'), when='@1.2.0:')
depends_on('r-gitcreds', type=('build', 'run'), when='@1.2.0:')
depends_on('r-httr', type=('build', 'run'))
depends_on('r-httr@1.2:', type=('build', 'run'), when='@1.1.0:')
depends_on('r-ini', type=('build', 'run'))
depends_on('r-jsonlite', type=('build', 'run'))
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/source-highlight/package.py
|
<filename>var/spack/repos/builtin/packages/source-highlight/package.py
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class SourceHighlight(AutotoolsPackage, GNUMirrorPackage):
"""This program, given a source file, produces a document with syntax
highlighting. It also provides a C++ highlight library
(since version 3.0). """
homepage = "https://www.gnu.org/software/src-highlite/"
gnu_mirror_path = "src-highlite/source-highlight-3.1.8.tar.gz"
git = "https://git.savannah.gnu.org/git/src-highlite.git"
version('master', branch='master')
version('3.1.9', sha256='3a7fd28378cb5416f8de2c9e77196ec915145d44e30ff4e0ee8beb3fe6211c91')
version('3.1.8', sha256='01336a7ea1d1ccc374201f7b81ffa94d0aecb33afc7d6903ebf9fbf33a55ada3')
patch('https://git.savannah.gnu.org/cgit/src-highlite.git/' +
'patch/lib?id=904949c9026cb772dc93fbe0947a252ef47127f4',
sha256='45087b174b2b128a8dc81b0728f8ae63213d255ceef6dabfcba27c94e2a75ce9',
when='%gcc@11:')
depends_on('boost')
# git version needs autotools
depends_on('m4', when='@master')
depends_on('autoconf', when='@master')
depends_on('automake', when='@master')
depends_on('libtool', when='@master')
depends_on('texinfo', when='@master')
def configure_args(self):
args = ["--with-boost={0}".format(self.spec['boost'].prefix)]
return args
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/r-rbibutils/package.py
|
<reponame>player1537-forks/spack
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RRbibutils(RPackage):
"""Convert Between Bibliography Formats.
Converts between a number of bibliography formats, including 'BibTeX',
'BibLaTeX' and 'Bibentry'. Includes a port of the 'bibutils' utilities by
<NAME> <https://sourceforge.net/projects/bibutils/>. Supports all
bibliography formats and character encodings implemented in 'bibutils'."""
cran = "rbibutils"
version('2.2.7', sha256='7c9e6719556b8caa9fb58743b717e89f45e8e7018371bf16f07dc3c1f96a55c5')
version('2.0', sha256='03d13abee321decb88bc4e7c9f27276d62a4a880fa72bb6b86be91885010cfed')
depends_on('r@2.10:', type=('build', 'run'))
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/r-gamm4/package.py
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RGamm4(RPackage):
"""Generalized Additive Mixed Models using 'mgcv' and 'lme4'.
Estimate generalized additive mixed models via a version of function gamm()
from 'mgcv', using 'lme4' for estimation."""
cran = "gamm4"
version('0.2-6', sha256='57c5b66582b2adc32f6a3bb6a259f5b95198e283a96d966a6007e8e48b380c89')
depends_on('r@2.9.0:', type=('build', 'run'))
depends_on('r-matrix', type=('build', 'run'))
depends_on('r-lme4@1.0:', type=('build', 'run'))
depends_on('r-mgcv@1.7-23:', type=('build', 'run'))
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/cmaq/package.py
|
<reponame>player1537-forks/spack<filename>var/spack/repos/builtin/packages/cmaq/package.py<gh_stars>10-100
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Cmaq(Package):
"""Code base for the U.S. EPA's Community Multiscale Air Quality Model
(CMAQ)."""
homepage = "https://www.epa.gov/CMAQ"
url = "https://github.com/USEPA/CMAQ/archive/CMAQv5.3.1_19Dec2019.tar.gz"
version('5.3.1', sha256='659156bba27f33010e0fdc157a8d33f3b5b779b95511e2ade870284b6bcb4bc8',
url='https://github.com/USEPA/CMAQ/archive/CMAQv5.3.1_19Dec2019.tar.gz')
version('5.3', sha256='e245c291c7e88d481b13f577d1af9aeb5aef4de8c59f7fa06fa41d19bb2ed18c',
url='https://github.com/USEPA/CMAQ/archive/CMAQv5.3_27Aug2019.tar.gz')
def install(self, spec, prefix):
install_tree('.', prefix)
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/cjson/package.py
|
<gh_stars>10-100
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Cjson(CMakePackage):
"""Ultralightweight JSON parser in ANSI C."""
homepage = 'https://github.com/DaveGamble/cJSON'
git = 'https://github.com/DaveGamble/cJSON'
url = 'https://github.com/DaveGamble/cJSON/archive/refs/tags/v1.7.15.zip'
version('1.7.15', sha256='c55519316d940757ef93a779f1db1ca809dbf979c551861f339d35aaea1c907c')
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/sandbox/package.py
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Sandbox(AutotoolsPackage):
"""sandbox'd LD_PRELOAD hack by Gentoo Linux"""
homepage = "https://www.gentoo.org/proj/en/portage/sandbox/"
url = "https://dev.gentoo.org/~mgorny/dist/sandbox-2.12.tar.xz"
version('2.12', sha256='265a490a8c528237c55ad26dfd7f62336fa5727c82358fc9cfbaa2e52c47fc50')
depends_on('gawk', type='build')
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/py-tqdm/package.py
|
<reponame>player1537-forks/spack<gh_stars>10-100
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class PyTqdm(PythonPackage):
"""A Fast, Extensible Progress Meter"""
homepage = "https://github.com/tqdm/tqdm"
pypi = "tqdm/tqdm-4.45.0.tar.gz"
version('4.62.3', sha256='d359de7217506c9851b7869f3708d8ee53ed70a1b8edbba4dbcb47442592920d')
version('4.59.0', sha256='d666ae29164da3e517fcf125e41d4fe96e5bb375cd87ff9763f6b38b5592fe33')
version('4.56.2', sha256='11d544652edbdfc9cc41aa4c8a5c166513e279f3f2d9f1a9e1c89935b51de6ff')
version('4.46.0', sha256='4733c4a10d0f2a4d098d801464bdaf5240c7dadd2a7fde4ee93b0a0efd9fb25e')
version('4.45.0', sha256='00339634a22c10a7a22476ee946bbde2dbe48d042ded784e4d88e0236eca5d81')
version('4.36.1', sha256='abc25d0ce2397d070ef07d8c7e706aede7920da163c64997585d42d3537ece3d')
version('4.8.4', sha256='bab05f8bb6efd2702ab6c532e5e6a758a66c0d2f443e09784b73e4066e6b3a37')
variant('telegram', default=False, description='Enable Telegram bot support')
variant('notebook', default=False, description='Enable Jupyter Notebook support')
depends_on('python@2.7:2.8,3.4:', type=('build', 'run'))
depends_on('py-setuptools@42:', type=('build', 'run'))
depends_on('py-setuptools-scm@3.4:+toml', type='build')
# depends_on('py-colorama', type=('build', 'run'), when='platform=windows')
depends_on('py-requests', when='+telegram', type=('build', 'run'))
depends_on('py-ipywidgets@6:', when='+notebook', type=('build', 'run'))
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/packmol/package.py
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Packmol(CMakePackage):
"""Packmol creates an initial point for molecular dynamics simulations
by packing molecules in defined regions of space."""
homepage = "https://m3g.iqm.unicamp.br/packmol/home.shtml"
url = "https://github.com/mcubeg/packmol/archive/18.169.tar.gz"
version('18.169', sha256='8acf2cbc742a609e763eb00cae55aecd09af2edb4cc4e931706e2f06ac380de9')
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/openslp/package.py
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Openslp(AutotoolsPackage):
"""OpenSLP project is an effort to develop an open-source,
commercial-grade, implementation of IETF Standards track
Service Location Protocol (RFC 2608). The interface conforms
to IETF Standards track, "An API for Service Location"
(RFC 2614)"""
homepage = "http://www.openslp.org/"
url = "https://github.com/openslp-org/openslp/archive/openslp-2.0.0.tar.gz"
version('2.0.0', sha256='9dda45ff52cf8561ca1414ac8b4947ed2d9b43e66aec03478fa0ed37121a5ea2')
depends_on('autoconf', type='build')
depends_on('automake', type='build')
depends_on('libtool', type='build')
depends_on('m4', type='build')
depends_on('flex', type='build')
depends_on('byacc', type='build')
configure_directory = 'openslp'
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/mpir/package.py
|
<filename>var/spack/repos/builtin/packages/mpir/package.py
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Mpir(Package):
"""Multiple Precision Integers and Rationals."""
homepage = "https://github.com/wbhart/mpir"
url = "https://github.com/wbhart/mpir/archive/mpir-2.7.0.tar.gz"
git = "https://github.com/wbhart/mpir.git"
version('develop', branch='master')
version('2.7.0', sha256='2d0174aaccff918766215df00420f12929a6c376ab4e558af31f57c55193bcb7')
version('2.6.0', sha256='dedb336098d41d4e298909586cf351003bcd7aad9317e801f3e4c4838f6d7691')
# This setting allows mpir to act as a drop-in replacement for gmp
variant('gmp_compat', default=False,
description='Compile with GMP library compatibility')
# Build dependencies
depends_on('autoconf', type='build')
# Other dependencies
depends_on('yasm')
def install(self, spec, prefix):
# We definitely don't want to have MPIR build its
# own version of YASM. This tries to install it
# to a system directory.
options = ['--prefix={0}'.format(prefix),
'--with-system-yasm']
if '+gmp_compat' in spec:
options.extend(['--enable-gmpcompat'])
configure(*options)
make()
if self.run_tests:
make('check')
make('install')
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/minuit/package.py
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Minuit(AutotoolsPackage):
"""MINUIT is a physics analysis tool for function minimization."""
homepage = "https://seal.web.cern.ch/seal/snapshot/work-packages/mathlibs/minuit/home.html"
url = "http://www.cern.ch/mathlibs/sw/5_34_14/Minuit2/Minuit2-5.34.14.tar.gz"
list_url = "https://seal.web.cern.ch/seal/snapshot/work-packages/mathlibs/minuit/release/download.html"
version('5.34.14', sha256='2ca9a283bbc315064c0a322bc4cb74c7e8fd51f9494f7856e5159d0a0aa8c356')
version('5.28.00', sha256='c3d380b021f4f8e21cde9b73f7019a2aa94c4fcaf5af3f30151ef5f7bfcb23cb')
version('5.27.02', sha256='262e2a014f17dd54535b71efc69d1ee6318e6109a57dbe376b416247a031ad5e')
version('5.24.00', sha256='2e4df8de85eab97484424d1c10128c489948f0dbab4779c36195aa1a42d4b2c2')
version('5.22.00', sha256='9a64698e8c38a1ac88c98a023f423611f3a157fd9f63bf13671211d3c7a9d7c4')
version('5.21.06', sha256='4c12b35993c8ecf644043d3d876afb5537a702eb24771f57dbe55d5ea6f49d92')
version('5.20.00', sha256='c5afbfcf25cb4fb95f773f6611a46ec4f293ad2f3c3a3cd75f79ea5e226f62e4')
version('5.18.00', sha256='57f0a6079677d45f89ac7d1105bbcb28fe6f22609856f3225c582ff5209ada7e')
version('5.16.00', sha256='db840e4983de0cea9fa1e861cd3c373c5effd969ad88849b1dd0894f80a02717')
version('5.14.00', sha256='d38fc8477124b07ebf38fa3fe9f16e7fa070aefe700fce15454b2e749f89db8d')
version('5.12.00', sha256='c206033a723888a0a079fd0de05027460d99dca1d2b4eeb0ad0e7b60cea86236')
version('5.10.00', sha256='4f51eb73b0eed527cc2c6f860cc6e2a5d86bb84f37f3c6d8ca469ce6c1ae96c4')
version('5.08.00', sha256='cf5f2858f40933928738b4d204651dfdfdca8431111bb8b7300b3b43b9b5fa30')
version('1.7.9', sha256='a7b7fdf89267fe272ae336725c9f4b98e5ccc67ab666e34284a64ec977ee0e07')
version('1.7.6', sha256='1141e885eec53a0fa859581c160dee522876c65fc7396255ab9a0388622aedd8')
version('1.7.1', sha256='fe7255974969a7e329dd3ed2b934f502c80a6f74ffb85a311ea56a325cd7ca06')
version('1.6.3', sha256='17851717cd7e99c705bf3546641572064ef9485653c5741698ff760d34af7271')
version('1.6.0', sha256='d12259f53ed9957215c3cef11e2d0dce755f627bb3506172f25dcd7ce9950a24')
version('1.5.2', sha256='b0ed8d7d0071b1e8daa5a5dc4c05d522731617a5430a288b932edc331869c063')
version('1.5.0', sha256='b5fffdc1d06a2b4ffd6dad5fdd30d127ea354a789aaa9f25f33cf7c539898b7f')
def url_for_version(self, version):
if version > Version('5.0.0'):
url = "http://www.cern.ch/mathlibs/sw/{0}/Minuit2/Minuit2-{1}.tar.gz"
return url.format(version.underscored, version)
else:
url = "http://seal.web.cern.ch/seal/minuit/releases/Minuit-{0}.tar.gz"
return url.format(version.underscored)
patch('sprintf.cxx.patch', when='@5.08.00:5.18.00')
patch('sprintf.patch', when='@:1.7.9')
patch('LASymMatrix.h.patch', when='@:1.7.6')
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/r-yaimpute/package.py
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RYaimpute(RPackage):
"""Nearest Neighbor Observation Imputation and Evaluation Tools.
Performs nearest neighbor-based imputation using one or more alternative
approaches to processing multivariate data. These include methods based on
canonical correlation analysis, canonical correspondence analysis, and a
multivariate adaptation of the random forest classification and regression
techniques of Leo Breiman and Adele Cutler. Additional methods are also
offered. The package includes functions for comparing the results from
running alternative techniques, detecting imputation targets that are
notably distant from reference observations, detecting and correcting for
bias, bootstrapping and building ensemble imputations, and mapping
results."""
cran = "yaImpute"
version('1.0-32', sha256='08eee5d851b80aad9c7c80f9531aadd50d60e4b16b3a80657a50212269cd73ff')
depends_on('r@3.0:', type=('build', 'run'))
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/fastdfs/package.py
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Fastdfs(Package):
"""
FastDFS is an open source high performance distributed file system.
It's major functions include: file storing, file syncing and file
accessing (file uploading and file downloading), and it can resolve
the high capacity and load balancing problem. FastDFS should meet
the requirement of the website whose service based on files such
as photo sharing site and video sharing site.
"""
homepage = "https://github.com/happyfish100/fastdfs"
url = "https://github.com/happyfish100/fastdfs/archive/V6.05.tar.gz"
version('6.05', sha256='00b736a1a7bd9cb5733aa51969efaa3b46df3764988c1edb43f06d72c4d575d9')
version('6.04', sha256='76090f6bbd0add08b049ce17f30a7507a44ef0d883784cad774b380ba4906916')
version('6.03', sha256='142be123eb389335b3b3793f0765494bdad3a632e4352af57861ed29098ec8d1')
version('6.02', sha256='b1801f80da9ebce1d84e7e05356c4614190651cb6a5cb4f5662d9196fe243e21')
version('6.01', sha256='b72f4ff6beb21a83af59aeba9f1904e727fa2c1e960e0a9c2b969138d2804148')
depends_on('perl', type='build')
depends_on('libfastcommon', type='build')
def install(self, spec, prefix):
sh = which('sh')
sh('make.sh')
sh('make.sh', 'install')
install_tree('.', prefix)
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/capstone/package.py
|
<reponame>player1537-forks/spack
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Capstone(CMakePackage):
"""Capstone is a lightweight multi-platform,
multi-architecture disassembly framework."""
homepage = "https://www.capstone-engine.org/"
url = "https://github.com/capstone-engine/capstone/archive/4.0.1.tar.gz"
git = "https://github.com/capstone-engine/capstone.git"
version('next', branch='next')
version('4.0.2', sha256='7c81d798022f81e7507f1a60d6817f63aa76e489aa4e7055255f21a22f5e526a')
version('4.0.1', sha256='79bbea8dbe466bd7d051e037db5961fdb34f67c9fac5c3471dd105cfb1e05dc7')
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/py-yolk3k/package.py
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class PyYolk3k(PythonPackage):
"""Yolk is a Python tool for obtaining information about installed Python
packages and querying packages avilable on PyPI (Python Package Index).
Yolk3k is a fork of the original yolk. `yolk3k` add Python 3 support and
adds additional features."""
homepage = "https://github.com/myint/yolk"
pypi = "yolk3k/yolk3k-0.9.tar.gz"
version('0.9', sha256='cf8731dd0a9f7ef50b5dc253fe0174383e3fed295a653672aa918c059eef86ae')
depends_on('py-setuptools', type='build')
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/r-gsalib/package.py
|
<filename>var/spack/repos/builtin/packages/r-gsalib/package.py
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RGsalib(RPackage):
"""Utility Functions For GATK.
This package contains utility functions used by the Genome Analysis
Toolkit (GATK) to load tables and plot data. The GATK is a toolkit for
variant discovery in high-throughput sequencing data."""
cran = "gsalib"
version('2.1', sha256='e1b23b986c18b89a94c58d9db45e552d1bce484300461803740dacdf7c937fcc')
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/slurm-drmaa/package.py
|
<reponame>player1537-forks/spack
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class SlurmDrmaa(AutotoolsPackage):
'''
DRMAA for Slurm is an implementation of Open Grid Forum DRMAA 1.0 (Distributed
Resource Management Application API) specification for submission and control of
jobs to SLURM. Using DRMAA, grid applications builders, portal developers and
ISVs can use the same high-level API to link their software with different
cluster/resource management systems.
'''
homepage = "https://github.com/natefoo/slurm-drmaa"
url = "https://github.com/natefoo/slurm-drmaa/releases/download/1.1.2/slurm-drmaa-1.1.2.tar.gz"
git = 'https://github.com/natefoo/slurm-drmaa.git'
maintainers = ['pwablito']
version('main', branch='main', submodules=True)
version('1.1.2', sha256='5bfe25d501de83729df3c8c8f28535b9da3e99aea7738e259903abd6f1f5c836')
# Remove this patch when it is merged into main:
patch('https://patch-diff.githubusercontent.com/raw/natefoo/slurm-drmaa/pull/62.patch',
sha256='86bba5e2683f33e59f7e9193aa5fa948eb6a5507d44768f2f6d756a33fef7b74',
when='@main')
depends_on('autoconf', type='build', when='@main')
depends_on('automake', type='build', when='@main')
depends_on('libtool', type='build', when='@main')
depends_on('bison', type='build', when='@main')
depends_on("slurm")
depends_on("slurm@:20-11-8-1", when='@1.1.2')
depends_on("gperf")
depends_on("ragel")
def check(self):
pass
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/py-sgp4/package.py
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class PySgp4(PythonPackage):
"""Track earth satellite TLE orbits using up-to-date 2010 version of SGP4
"""
homepage = "https://github.com/brandon-rhodes/python-sgp4"
pypi = "sgp4/sgp4-1.4.tar.gz"
version('1.4', sha256='1fb3cdbc11981a9ff34a032169f83c1f4a2877d1b6c295aed044e1d890b73892')
depends_on('python@2.6:2.8,3.3:', type=('build', 'run'))
# pip silently replaces distutils with setuptools
depends_on('py-setuptools', type='build')
|
player1537-forks/spack
|
lib/spack/spack/cmd/patch.py
|
<reponame>player1537-forks/spack<gh_stars>10-100
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import llnl.util.tty as tty
import spack.cmd
import spack.cmd.common.arguments as arguments
import spack.repo
description = "patch expanded archive sources in preparation for install"
section = "build"
level = "long"
def setup_parser(subparser):
arguments.add_common_arguments(
subparser, ['no_checksum', 'deprecated', 'specs'])
def patch(parser, args):
if not args.specs:
tty.die("patch requires at least one spec argument")
if args.no_checksum:
spack.config.set('config:checksum', False, scope='command_line')
if args.deprecated:
spack.config.set('config:deprecated', True, scope='command_line')
specs = spack.cmd.parse_specs(args.specs, concretize=True)
for spec in specs:
package = spack.repo.get(spec)
package.do_patch()
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/ruby-svn2git/package.py
|
<gh_stars>10-100
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
class RubySvn2git(RubyPackage):
"""svn2git is a tiny utility for migrating projects from Subversion to Git
while keeping the trunk, branches and tags where they should be. It uses
git-svn to clone an svn repository and does some clean-up to make sure
branches and tags are imported in a meaningful way, and that the code
checked into master ends up being what's currently in your svn trunk rather
than whichever svn branch your last commit was in."""
homepage = "https://github.com/nirvdrum/svn2git/"
url = "https://github.com/nirvdrum/svn2git/archive/v2.4.0.tar.gz"
version('2.4.0', sha256='81d0a3eff5b12b729d0fe8ad117db386954c635067f1c86007360c6c76dec253')
depends_on('git')
depends_on('subversion+perl')
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/libmng/package.py
|
<filename>var/spack/repos/builtin/packages/libmng/package.py
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Libmng(CMakePackage):
"""THE reference library for reading, displaying, writing
and examining Multiple-Image Network Graphics. MNG is the animation
extension to the popular PNG image format."""
homepage = "https://sourceforge.net/projects/libmng/"
url = "http://downloads.sourceforge.net/project/libmng/libmng-devel/2.0.3/libmng-2.0.3.tar.gz"
version('2.0.3', sha256='cf112a1fb02f5b1c0fce5cab11ea8243852c139e669c44014125874b14b7dfaa')
version('2.0.2', sha256='4908797bb3541fb5cd8fffbe0b1513ed163509f2a4d57a78b26a96f8d1dd05a2')
depends_on("jpeg")
depends_on("zlib")
depends_on("lcms")
def patch(self):
# jpeg requires stdio to be included before its headers.
filter_file(r'^(\#include \<jpeglib\.h\>)',
'#include<stdio.h>\n\\1', 'libmng_types.h')
def cmake_args(self):
return ['-DWITH_LCMS2:BOOL=ON',
'-DWITH_LCMS1:BOOL=OFF']
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/py-us/package.py
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class PyUs(PythonPackage):
"""US state meta information and other fun stuff."""
pypi = "us/us-1.0.0.tar.gz"
version('1.0.0', sha256='09dc9ba763e2e4399e6a042104f3e415a7de6bfa4df6f557b4f19e3ba9a22fda')
depends_on('py-setuptools', type='build')
depends_on('py-jellyfish@0.5.6', type=('build', 'run'))
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/r-als/package.py
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RAls(RPackage):
"""Multivariate Curve Resolution Alternating Least Squares (MCR-ALS).
Alternating least squares is often used to resolve components contributing
to data with a bilinear structure; the basic technique may be extended to
alternating constrained least squares. Commonly applied constraints
include unimodality, non-negativity, and normalization of components.
Several data matrices may be decomposed simultaneously by assuming that one
of the two matrices in the bilinear decomposition is shared between
datasets."""
cran = "ALS"
version('0.0.6', sha256='ca90d27115ae9e476967f521bf6935723e410a3bf92477e7570e14bfd3b099eb')
depends_on('r@2.10:', type=('build', 'run'))
depends_on('r-iso', type=('build', 'run'))
depends_on('r-nnls@1.1:', type=('build', 'run'))
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/r-tseries/package.py
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RTseries(RPackage):
"""Time series analysis and computational finance."""
cran = "tseries"
version('0.10-49', sha256='45bf26d8f41f12a72954bbe5fb6f4da6cc4ef29ee075c49fe7cc8456926c14ba')
version('0.10-48', sha256='53bd22708c936205c5f839a10f2e302524d2cc54dc309e7d885ebd081ccb4471')
version('0.10-47', sha256='202377df56806fe611c2e12c4d9732c71b71220726e2defa7e568d2b5b62fb7b')
version('0.10-46', sha256='12940afd1d466401160e46f993ed4baf28a42cef98d3757b66ee15e916e07222')
version('0.10-42', sha256='827f79858715c700e8cabd2c27853ba88ad0e05eb043bc94e126b155a75546c4')
depends_on('r@2.10.0:', type=('build', 'run'))
depends_on('r-quadprog', type=('build', 'run'))
depends_on('r-zoo', type=('build', 'run'))
depends_on('r-quantmod@0.4-9:', type=('build', 'run'))
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/remhos/package.py
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Remhos(MakefilePackage):
"""Remhos (REMap High-Order Solver) is a CEED miniapp that performs monotonic
and conservative high-order discontinuous field interpolation (remap)
using DG advection-based spatial discretization and explicit high-order
time-stepping.
"""
tags = ['proxy-app']
homepage = "https://github.com/CEED/Remhos"
url = "https://github.com/CEED/Remhos/archive/v1.0.tar.gz"
git = "https://github.com/CEED/Remhos.git"
maintainers = ['v-dobrev', 'tzanio', 'vladotomov']
version('develop', branch='master')
version('1.0', sha256='e60464a867fe5b1fd694fbb37bb51773723427f071c0ae26852a2804c08bbb32')
variant('metis', default=True, description='Enable/disable METIS support')
depends_on('mfem+mpi+metis', when='+metis')
depends_on('mfem+mpi~metis', when='~metis')
depends_on('mfem@develop', when='@develop')
depends_on('mfem@4.1.0:', when='@1.0')
@property
def build_targets(self):
targets = []
spec = self.spec
targets.append('MFEM_DIR=%s' % spec['mfem'].prefix)
targets.append('CONFIG_MK=%s' % spec['mfem'].package.config_mk)
targets.append('TEST_MK=%s' % spec['mfem'].package.test_mk)
return targets
# See lib/spack/spack/build_systems/makefile.py
def check(self):
with working_dir(self.build_directory):
make('tests', *self.build_targets)
def install(self, spec, prefix):
mkdirp(prefix.bin)
install('remhos', prefix.bin)
install_time_test_callbacks = []
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/py-hypothesis/package.py
|
<reponame>player1537-forks/spack<filename>var/spack/repos/builtin/packages/py-hypothesis/package.py
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class PyHypothesis(PythonPackage):
"""A library for property based testing."""
homepage = "https://github.com/HypothesisWorks/hypothesis-python"
pypi = "hypothesis/hypothesis-4.41.2.tar.gz"
version('6.23.1', sha256='23a1b0488aec5719e2f9e399342e10f30d497cbb9fd39470ef0975c1b502ae35')
version('5.3.0', sha256='c9fdb53fe3bf1f8e7dcca1a7dd6e430862502f088aca2903d141511212e79429')
version('4.57.1', sha256='3c4369a4b0a1348561048bcda5f1db951a1b8e2a514ea8e8c70d36e656bf6fa0')
version('4.41.2', sha256='6847df3ffb4aa52798621dd007e6b61dbcf2d76c30ba37dc2699720e2c734b7a')
version('4.24.3', sha256='fd90a319f409f34a173156ca704d6c0c6c0bb30a2e43dbf26aced2c75569e5d5')
version('4.7.2', sha256='87944c6379f77634474b88abbf1e5ed5fe966637cc926131eda5e2af5b54a608')
version('3.7.0', sha256='0fea49d08f2d5884f014151a5af6fb48d862f6ad567ffc4a2e84abf2f186c423')
depends_on('python@2.7:2.8,3.5:', type=('build', 'run'))
depends_on('python@3.6:', type=('build', 'run'), when='@6:')
depends_on('py-setuptools@36.2:', type=('build'))
depends_on('py-attrs@19.2.0:', when='@4.38.2:', type=('build', 'run'))
depends_on('py-attrs@16.0.0:', when='@3.44.22:', type=('build', 'run'))
depends_on('py-attrs', when='@3.28.0:', type=('build', 'run'))
depends_on('py-enum34', type=('build', 'run'), when='^python@:2')
depends_on('py-sortedcontainers@2.1.0:2', type=('build', 'run'), when='@4.57.1:')
depends_on('py-django@2.2:', type='run', when='+django')
depends_on('py-pytz@2014.1:', type='run', when='+django')
depends_on('py-numpy@1.9.0:', type='run', when='+numpy')
depends_on('py-pandas@0.25:', type='run', when='+pandas')
variant('django', default=False, description='Enable django support')
variant('numpy', default=False, description='Enable numpy support')
variant('pandas', default=False, description='Enable pandas support')
# All modules except for 'hypothesis.extra.pandas' and 'hypothesis.extra.django',
# which are optional and are only added when their variants are enabled:
import_test_modules = [
'hypothesis', 'hypothesis.extra', 'hypothesis.utils',
'hypothesis.strategies', 'hypothesis.strategies._internal',
'hypothesis.vendor', 'hypothesis.internal', 'hypothesis.internal.conjecture',
'hypothesis.internal.conjecture.shrinking', 'hypothesis.internal.conjecture.dfa'
]
@property
def import_modules(self):
if self.spec.satisfies('+pandas'):
self.import_test_modules.append('hypothesis.extra.pandas')
if self.spec.satisfies('+django'):
self.import_test_modules.append('hypothesis.extra.django')
return self.import_test_modules
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/r-adgoftest/package.py
|
<gh_stars>10-100
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RAdgoftest(RPackage):
"""Anderson-Darling GoF test.
Anderson-Darling GoF test with p-value calculation based on Marsaglia's
2004 paper 'Evaluating the Anderson-Darling Distribution'."""
cran = "ADGofTest"
version('0.3', sha256='9cd9313954f6ecd82480d373f6c5371ca84ab33e3f5c39d972d35cfcf1096846')
|
player1537-forks/spack
|
lib/spack/spack/test/cvs_fetch.py
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import os
import pytest
from llnl.util.filesystem import mkdirp, touch, working_dir
import spack.config
import spack.repo
from spack.fetch_strategy import CvsFetchStrategy
from spack.spec import Spec
from spack.stage import Stage
from spack.util.executable import which
from spack.version import ver
pytestmark = pytest.mark.skipif(
not which('cvs'),
reason='requires CVS to be installed')
@pytest.mark.parametrize("type_of_test", ['default', 'branch', 'date'])
def test_fetch(
type_of_test,
mock_cvs_repository,
config,
mutable_mock_repo
):
"""Tries to:
1. Fetch the repo using a fetch strategy constructed with
supplied args (they depend on type_of_test).
2. Check whether the checkout is on the correct branch or date
3. Check if the test_file is in the checked out repository.
4. Add and remove some files, then reset the repo, and
ensure it's all there again.
CVS does not have the notion of a unique branch; branches and revisions
are managed separately for every file.
"""
# Retrieve the right test parameters
test = mock_cvs_repository.checks[type_of_test]
get_branch = mock_cvs_repository.get_branch
get_date = mock_cvs_repository.get_date
# Construct the package under test
spec = Spec('cvs-test')
spec.concretize()
pkg = spack.repo.get(spec)
pkg.versions[ver('cvs')] = test.args
# Enter the stage directory and check some properties
with pkg.stage:
pkg.do_stage()
with working_dir(pkg.stage.source_path):
# Check branch
if test.branch is not None:
assert get_branch() == test.branch
# Check date
if test.date is not None:
assert get_date() <= test.date
file_path = os.path.join(pkg.stage.source_path, test.file)
assert os.path.isdir(pkg.stage.source_path)
assert os.path.isfile(file_path)
os.unlink(file_path)
assert not os.path.isfile(file_path)
untracked_file = 'foobarbaz'
touch(untracked_file)
assert os.path.isfile(untracked_file)
pkg.do_restage()
assert not os.path.isfile(untracked_file)
assert os.path.isdir(pkg.stage.source_path)
assert os.path.isfile(file_path)
def test_cvs_extra_fetch(tmpdir):
"""Ensure a fetch after downloading is effectively a no-op."""
testpath = str(tmpdir)
fetcher = CvsFetchStrategy(
cvs=':pserver:not-a-real-cvs-repo%module=not-a-real-module')
assert fetcher is not None
with Stage(fetcher, path=testpath) as stage:
assert stage is not None
source_path = stage.source_path
mkdirp(source_path)
# TODO: This doesn't look as if it was testing what this function's
# comment says it is testing. However, the other `test_*_extra_fetch`
# functions (for svn, git, hg) use equivalent code.
#
# We're calling `fetcher.fetch` twice as this might be what we want to
# do, and it can't hurt. See
# <https://github.com/spack/spack/pull/23212> for a discussion on this.
# Fetch once
fetcher.fetch()
# Fetch a second time
fetcher.fetch()
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/py-numpydoc/package.py
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class PyNumpydoc(PythonPackage):
"""numpydoc - Numpy's Sphinx extensions"""
homepage = "https://github.com/numpy/numpydoc"
pypi = "numpydoc/numpydoc-0.6.0.tar.gz"
version('1.1.0', sha256='c36fd6cb7ffdc9b4e165a43f67bf6271a7b024d0bb6b00ac468c9e2bfc76448e')
version('0.6.0', sha256='1ec573e91f6d868a9940d90a6599f3e834a2d6c064030fbe078d922ee21dcfa1')
depends_on('python@2.6:2.8,3.3:', when='@0.6.0')
depends_on('python@3.5:', when='@1.1.0')
depends_on('py-setuptools', type='build')
depends_on('py-sphinx@1.0.1:1.6.7', type='build', when='@0.6.0')
depends_on('py-sphinx@1.6.5:', type='build', when='@1.1.0')
depends_on('py-jinja2@2.3:', type='build', when='@1.1.0')
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/py-diskcache/package.py
|
<filename>var/spack/repos/builtin/packages/py-diskcache/package.py
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
class PyDiskcache(PythonPackage):
"""Disk Cache -- Disk and file backed persistent cache."""
homepage = "http://www.grantjenks.com/docs/diskcache/"
pypi = "diskcache/diskcache-4.1.0.tar.gz"
version('5.2.1', sha256='1805acd5868ac10ad547208951a1190a0ab7bbff4e70f9a07cde4dbdfaa69f64')
version('4.1.0', sha256='bcee5a59f9c264e2809e58d01be6569a3bbb1e36a1e0fb83f7ef9b2075f95ce0')
depends_on("python", type=("build", "run"), when="@:4.1.0")
depends_on("python@3:", type=("build", "run"), when="@5.2.1:")
depends_on('py-setuptools', type='build')
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/dhtest/package.py
|
<filename>var/spack/repos/builtin/packages/dhtest/package.py
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Dhtest(MakefilePackage):
"""dhtest linux dhcp client simulation tool. It can simulate
hundreds of dhcp client from a linux machine. Linux root login
is needed because the tool requires layer2 raw socket for sending
and receiving dhcp packets."""
homepage = "https://github.com/saravana815/dhtest"
url = "https://github.com/saravana815/dhtest/archive/v1.5.tar.gz"
version('1.5', sha256='df66150429a59a3b6cea9b29e2687707d04ab10db5dfe1c893ba3e0b0531b151')
def install(self, spec, prefix):
mkdirp(prefix.bin)
install('dhtest', prefix.bin)
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/libxtrap/package.py
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Libxtrap(AutotoolsPackage, XorgPackage):
"""libXTrap is the Xlib-based client API for the DEC-XTRAP extension.
XTrap was a proposed standard extension for X11R5 which facilitated the
capturing of server protocol and synthesizing core input events.
Digital participated in the X Consortium's xtest working group which chose
to evolve XTrap functionality into the XTEST & RECORD extensions for X11R6.
As X11R6 was released in 1994, XTrap has now been deprecated for over
15 years, and uses of it should be quite rare."""
homepage = "https://cgit.freedesktop.org/xorg/lib/libXTrap"
xorg_mirror_path = "lib/libXTrap-1.0.1.tar.gz"
version('1.0.1', sha256='db748e299dcc9af68428795b898a4a96cf806f79b75786781136503e4fce5e17')
depends_on('libx11')
depends_on('libxt')
depends_on('libxext')
depends_on('trapproto')
depends_on('xextproto')
depends_on('pkgconfig', type='build')
depends_on('util-macros', type='build')
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/py-terminado/package.py
|
<gh_stars>10-100
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
class PyTerminado(PythonPackage):
"""Terminals served to term.js using Tornado websockets"""
pypi = "terminado/terminado-0.8.3.tar.gz"
version('0.12.1', sha256='b20fd93cc57c1678c799799d117874367cc07a3d2d55be95205b1a88fa08393f')
version('0.8.3', sha256='4804a774f802306a7d9af7322193c5390f1da0abb429e082a10ef1d46e6fb2c2')
version('0.8.2', sha256='de08e141f83c3a0798b050ecb097ab6259c3f0331b2f7b7750c9075ced2c20c2')
version('0.8.1', sha256='55abf9ade563b8f9be1f34e4233c7b7bde726059947a593322e8a553cc4c067a')
version('0.6', sha256='2c0ba1f624067dccaaead7d2247cfe029806355cef124dc2ccb53c83229f0126')
depends_on('python@3.6:', when='@0.12.1:', type=('build', 'run'))
depends_on('python@2.7:2.8,3.4:', when='@0.8.2:', type=('build', 'run'))
depends_on('py-setuptools@40.8.0:', when='@0.12.1:', type='build')
depends_on('py-setuptools', type='build')
depends_on('py-flit', when='@0.8', type='build')
depends_on('py-tornado@4:', type=('build', 'run'))
depends_on('py-ptyprocess', type=('build', 'run'))
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/pindel/package.py
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Pindel(MakefilePackage):
"""Pindel can detect breakpoints from next-gen sequence data."""
homepage = "https://gmt.genome.wustl.edu/packages/pindel/"
url = "https://github.com/genome/pindel/archive/v0.2.5.tar.gz"
version('0.2.5b8', sha256='7f21fda0b751d420831724d96e60873ce332139cfd24396e81c7f1ae2f707a19')
version('0.2.5b6', sha256='fe19aabdcf6334b9efe92d4509b80f0f266e621f1cc8db017b301d7e32e2eeac')
version('0.2.5b5', sha256='2ebe9d959d8c3862d9103d8a3768265dcc79eab547035857dca8ab8cfe2544e4')
version('0.2.5b4', sha256='0f6afd6b83f6cceb31be5dbb686c6ff518c54135274931097a8b83b3f5d0372a')
version('0.2.5b1', sha256='b626e23ddfb3590174cfe38458b537e96707eedc6c2b054504f72ca141ba306c')
version('0.2.5a7', sha256='0a270483dee9ef617d422eb61d3478334ee8f55e952d0a439529c2b21fcf8fb4')
version('0.2.5', sha256='9908940d090eff23d940c3b6f2f6b3fc2bb1fd3b7a2d553cc81eed240a23fd9f')
depends_on('htslib@1.7:')
#
# This Makefile2 stuff is due to the original installer,
# The author wants to run make twice, the first
# time generates a Makefile.local then returns "false"
# User is then suppose to run make again and the
# package will compile. This is an attempt to
# stay as close to the original installer as possible
#
def edit(self, spec, prefix):
copy('Makefile', 'Makefile2')
myedit = FileFilter('Makefile2')
myedit.filter('-include Makefile.local', '#removed include')
myedit.filter('@false', '#removed autofailure')
def build(self, spec, prefix):
make("Makefile.local", "-f",
"Makefile2",
"HTSLIB=%s" % spec['htslib'].prefix)
make("HTSLIB=%s" % spec['htslib'].prefix)
def install(self, spec, prefix):
mkdirp(prefix.bin)
install('src/pindel', prefix.bin)
install('src/pindel2vcf', prefix.bin)
install('src/sam2pindel', prefix.bin)
install('src/pindel2vcf4tcga', prefix.bin)
install_tree('demo', prefix.doc)
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/py-pywcs/package.py
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class PyPywcs(PythonPackage):
"""pywcs is a set of routines for
handling the FITS World Coordinate System (WCS) standard."""
homepage = "https://github.com/spacetelescope/pywcs"
url = "https://github.com/spacetelescope/pywcs/archive/1.12.1.tar.gz"
version('1.12.1', sha256='efd4e0ea190e3a2521ebcde583452e126acdeac85cc8a9c78c8a96f10805b5e1')
depends_on('python@2.6:', type=('build', 'run'))
depends_on('py-setuptools', type='build')
depends_on('py-d2to1@0.2.3:', type='build')
depends_on('py-stsci-distutils@0.3.2:', type='build')
depends_on('py-numpy@1.5.1:', type=('build', 'run'))
depends_on('py-pyfits@1.4:', type=('build', 'run'))
depends_on('py-astropy@0.3.1:', type=('build', 'run'))
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/py-raven/package.py
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class PyRaven(PythonPackage):
"""Raven is a client for Sentry."""
homepage = "https://github.com/getsentry/raven-python"
pypi = "raven/raven-6.10.0.tar.gz"
version('6.10.0', sha256='3fa6de6efa2493a7c827472e984ce9b020797d0da16f1db67197bcc23c8fae54')
variant('flask', default=False, description='Build flask backend')
depends_on('py-setuptools', type='build')
depends_on('py-flask@0.8:', when='+flask', type=('build', 'run'))
depends_on('py-blinker@1.1:', when='+flask', type=('build', 'run'))
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/py-rdt/package.py
|
<gh_stars>10-100
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class PyRdt(PythonPackage):
"""RDT is a Python library used to transform data for data
science libraries and preserve the transformations in order
to revert them as needed."""
homepage = "https://github.com/sdv-dev/RDT"
pypi = "rdt/rdt-0.6.1.tar.gz"
version('0.6.1', sha256='ee2ac0d3479b254f99f35a709a24ffd5f2c899de6ea71f1ee844c6113febba71')
depends_on('python@3.6:', type=('build', 'run'))
depends_on('py-setuptools', type='build')
depends_on('py-numpy@1.18:1.19', type=('build', 'run'), when='^python@3.6')
depends_on('py-numpy@1.20:1', type=('build', 'run'), when='^python@3.7:')
depends_on('py-pandas@1.1.3:1.1.4', type=('build', 'run'))
depends_on('py-scipy@1.5.4:1', type=('build', 'run'))
depends_on('py-psutil@5.7:5', type=('build', 'run'))
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/hotspot/package.py
|
<gh_stars>10-100
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Hotspot(MakefilePackage):
"""HotSpot is an accurate and fast thermal model suitable for use ini
architectural studies."""
homepage = "http://lava.cs.virginia.edu/HotSpot/index.htm"
git = "https://github.com/uvahotspot/HotSpot.git"
version('6.0', commit='<PASSWORD>')
def install(self, spec, prefix):
mkdir(prefix.bin)
install('hotspot', prefix.bin)
install('hotfloorplan', prefix.bin)
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/turbomole/package.py
|
<reponame>player1537-forks/spack
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import os
import subprocess
from spack import *
class Turbomole(Package):
"""TURBOMOLE: Program Package for ab initio Electronic Structure
Calculations.
Note: Turbomole requires purchase of a license to download. Go to the
Turbomole home page, http://www.turbomole-gmbh.com, for details.
Spack will search the current directory for this file. It is
probably best to add this file to a Spack mirror so that it can be
found from anywhere. For information on setting up a Spack mirror
see https://spack.readthedocs.io/en/latest/mirrors.html"""
homepage = "http://www.turbomole-gmbh.com/"
manual_download = True
version('7.0.2', '92b97e1e52e8dcf02a4d9ac0147c09d6',
url="file://%s/turbolinux702.tar.gz" % os.getcwd())
variant('mpi', default=True, description='Set up MPI environment')
variant('smp', default=False, description='Set up SMP environment')
# Turbomole's install is odd. There are three variants
# - serial
# - parallel, MPI
# - parallel, SMP
#
# Only one of these can be active at a time. MPI and SMP are set as
# variants so there could be up to 3 installs per version. Switching
# between them would be accomplished with `module swap` commands.
def do_fetch(self, mirror_only=True):
if '+mpi' in self.spec and '+smp' in self.spec:
raise InstallError('Can not have both SMP and MPI enabled in the '
'same build.')
super(Turbomole, self).do_fetch(mirror_only)
def get_tm_arch(self):
if 'TURBOMOLE' in os.getcwd():
tm_sysname = Executable('./scripts/sysname')
tm_arch = tm_sysname(output=str)
return tm_arch.rstrip('\n')
else:
return
def install(self, spec, prefix):
calculate_version = 'calculate_2.4_linux64'
molecontrol_version = 'MoleControl_2.5'
tm_arch = self.get_tm_arch()
tar = which('tar')
dst = join_path(prefix, 'TURBOMOLE')
tar('-x', '-z', '-f', 'thermocalc.tar.gz')
with working_dir('thermocalc'):
subprocess.call('./install<<<y', shell=True)
install_tree('basen', join_path(dst, 'basen'))
install_tree('cabasen', join_path(dst, 'cabasen'))
install_tree(calculate_version, join_path(dst, calculate_version))
install_tree('cbasen', join_path(dst, 'cbasen'))
install_tree('DOC', join_path(dst, 'DOC'))
install_tree('jbasen', join_path(dst, 'jbasen'))
install_tree('jkbasen', join_path(dst, 'jkbasen'))
install_tree(molecontrol_version, join_path(dst, molecontrol_version))
install_tree('parameter', join_path(dst, 'parameter'))
install_tree('perlmodules', join_path(dst, 'perlmodules'))
install_tree('scripts', join_path(dst, 'scripts'))
install_tree('smprun_scripts', join_path(dst, 'smprun_scripts'))
install_tree('structures', join_path(dst, 'structures'))
install_tree('thermocalc', join_path(dst, 'thermocalc'))
install_tree('TURBOTEST', join_path(dst, 'TURBOTEST'))
install_tree('xbasen', join_path(dst, 'xbasen'))
install('Config_turbo_env', dst)
install('Config_turbo_env.tcsh', dst)
install('README', dst)
install('README_LICENSES', dst)
install('TURBOMOLE_702_LinuxPC', dst)
if '+mpi' in spec:
install_tree('bin/%s_mpi' % tm_arch,
join_path(dst, 'bin', '%s_mpi' % tm_arch))
install_tree('libso/%s_mpi' % tm_arch,
join_path(dst, 'libso', '%s_mpi' % tm_arch))
install_tree('mpirun_scripts/%s_mpi' % tm_arch,
join_path(dst, 'mpirun_scripts', '%s_mpi' % tm_arch))
elif '+smp' in spec:
install_tree('bin/%s_smp' % tm_arch,
join_path(dst, 'bin', '%s_smp' % tm_arch))
install_tree('libso/%s_smp' % tm_arch,
join_path(dst, 'libso', '%s_smp' % tm_arch))
install_tree('mpirun_scripts/%s_smp' % tm_arch,
join_path(dst, 'mpirun_scripts', '%s_smp' % tm_arch))
else:
install_tree('bin/%s' % tm_arch, join_path(dst, 'bin', tm_arch))
if '+mpi' in spec or '+smp' in spec:
install('mpirun_scripts/ccsdf12', join_path(dst, 'mpirun_scripts'))
install('mpirun_scripts/dscf', join_path(dst, 'mpirun_scripts'))
install('mpirun_scripts/grad', join_path(dst, 'mpirun_scripts'))
install('mpirun_scripts/mpgrad', join_path(dst, 'mpirun_scripts'))
install('mpirun_scripts/pnoccsd', join_path(dst, 'mpirun_scripts'))
install('mpirun_scripts/rdgrad', join_path(dst, 'mpirun_scripts'))
install('mpirun_scripts/ricc2', join_path(dst, 'mpirun_scripts'))
install('mpirun_scripts/ridft', join_path(dst, 'mpirun_scripts'))
def setup_run_environment(self, env):
molecontrol_version = 'MoleControl_2.5'
tm_arch = self.get_tm_arch()
env.set('TURBODIR', self.prefix.TURBOMOLE)
env.set('MOLE_CONTROL',
join_path(self.prefix, 'TURBOMOLE', molecontrol_version))
env.prepend_path('PATH', self.prefix.TURBOMOLE.thermocalc)
env.prepend_path('PATH', self.prefix.TURBOMOLE.scripts)
if '+mpi' in self.spec:
env.set('PARA_ARCH', 'MPI')
env.prepend_path('PATH', join_path(
self.prefix, 'TURBOMOLE', 'bin', '%s_mpi' % tm_arch))
elif '+smp' in self.spec:
env.set('PARA_ARCH', 'SMP')
env.prepend_path('PATH', join_path(
self.prefix, 'TURBOMOLE', 'bin', '%s_smp' % tm_arch))
else:
env.prepend_path('PATH', join_path(
self.prefix, 'TURBOMOLE', 'bin', tm_arch))
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/libiscsi/package.py
|
<filename>var/spack/repos/builtin/packages/libiscsi/package.py
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Libiscsi(AutotoolsPackage):
"""Libiscsi is a client-side library to implement the iSCSI protocol that can
be used to access the resources of an iSCSI target."""
homepage = "https://github.com/sahlberg/libiscsi"
url = "https://github.com/sahlberg/libiscsi/archive/1.19.0.tar.gz"
version('1.19.0', sha256='c7848ac722c8361d5064654bc6e926c2be61ef11dd3875020a63931836d806df')
version('1.18.0', sha256='464d104e12533dc11f0dd7662cbc2f01c132f94aa4f5bd519e3413ef485830e8')
version('1.17.0', sha256='80a7f75bfaffc8bec9920ba7af3f1d14cd862c35c3c5f2c9617b45b975232112')
version('1.16.0', sha256='35c7be63a8c3a7cee7b697901b6d2dd464e098e1881671eb67462983053b3c7b')
version('1.15.0', sha256='489e625e58c1e6da2fa3536f9c4b12290f2d3fb4ce14edc0583b8ba500605c34')
depends_on('autoconf', type='build')
depends_on('automake', type='build')
depends_on('libtool', type='build')
depends_on('m4', type='build')
def autoreconf(self, spec, prefix):
autoreconf('--install', '--force')
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/iso-codes/package.py
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class IsoCodes(AutotoolsPackage):
"""ISO-codes provides lists of various ISO standards"""
homepage = "https://salsa.debian.org/iso-codes-team/iso-codes"
url = "https://deb.debian.org/debian/pool/main/i/iso-codes/iso-codes_4.3.orig.tar.xz"
version('4.3', sha256='643eb83b2d714e8650ed7112706968d057bf5b101ba71c8ef219e20f1737b141')
depends_on('m4', type='build')
depends_on('autoconf', type='build')
depends_on('automake', type='build')
depends_on('libtool', type='build')
depends_on('gettext', type='build')
depends_on('python@3:', type='build')
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/py-machotools/package.py
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class PyMachotools(PythonPackage):
"""Python package for editing Mach-O headers using macholib"""
pypi = "machotools/machotools-0.2.0.tar.gz"
version('0.2.0', sha256='e3950fa263169087d44a3d0521a3267d5128efd1b85252670c7171955939ab58')
depends_on('py-setuptools', type='build')
depends_on('py-macholib', type=('build', 'run'))
|
player1537-forks/spack
|
var/spack/repos/builtin.mock/packages/a/package.py
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class A(AutotoolsPackage):
"""Simple package with one optional dependency"""
homepage = "http://www.example.com"
url = "http://www.example.com/a-1.0.tar.gz"
version('1.0', '<KEY>')
version('2.0', '<KEY>')
variant(
'foo', description='',
values=any_combination_of('bar', 'baz', 'fee').with_default('bar'),
)
variant(
'foobar',
values=('bar', 'baz', 'fee'),
default='bar',
description='',
multi=False
)
variant('lorem_ipsum', description='', default=False)
variant('bvv', default=True, description='The good old BV variant')
depends_on('b', when='foobar=bar')
depends_on('test-dependency', type='test')
parallel = False
def with_or_without_fee(self, activated):
if not activated:
return '--no-fee'
return '--fee-all-the-time'
def autoreconf(self, spec, prefix):
pass
def configure(self, spec, prefix):
pass
def build(self, spec, prefix):
pass
def install(self, spec, prefix):
# sanity_check_prefix requires something in the install directory
# Test requires overriding the one provided by `AutotoolsPackage`
mkdirp(prefix.bin)
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/scrot/package.py
|
<reponame>player1537-forks/spack
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Scrot(AutotoolsPackage):
"""scrot (SCReenshOT) is a simple command line screen
capture utility that uses imlib2 to grab and save images.
Multiple image formats are supported through imlib2's
dynamic saver modules."""
homepage = "https://github.com/resurrecting-open-source-projects/scrot"
url = "https://github.com/resurrecting-open-source-projects/scrot/releases/download/1.5/scrot-1.5.tar.gz"
version('1.6', sha256='42f64d38f04ec530c8b4ebdae04cce8b6893b2f8d30627391d390edcba917090')
version('1.5', sha256='42fcf1c97940f4b4e34ca69990a0fc9b98991357bd6a4b67f30ebe0ccc10f093')
depends_on('giblib', when='@:1.5')
depends_on('imlib2')
depends_on('libtool')
depends_on('libxcomposite')
depends_on('libxfixes')
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/librom/package.py
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
class Librom(AutotoolsPackage):
"""libROM: library for computing large-scale reduced order models"""
homepage = "https://github.com/LLNL/libROM"
git = "https://github.com/LLNL/libROM.git"
version('develop', branch='master')
depends_on('lapack')
depends_on('mpi')
depends_on('zlib')
depends_on('libszip')
depends_on('hdf5')
depends_on('perl')
depends_on('graphviz')
depends_on('doxygen')
depends_on('boost')
def configure_args(self):
spec = self.spec
args = ['--with-lapack={0}'.format(spec['lapack'].prefix),
'--with-lapack-libs={0}'.format(spec['lapack'].libs.ld_flags),
'--with-zlib={0}'.format(spec['zlib'].prefix),
'--with-szlib={0}'.format(spec['libszip'].prefix),
'--with-hdf5={0}'.format(spec['hdf5'].prefix),
'--with-MPICC={0}'.format(spec['mpi'].mpicc),
'--with-mpi-include={0}'.format(spec['mpi'].prefix.include),
'--with-mpi-libs={0}'.format(spec['mpi'].libs.ld_flags),
'--with-perl={0}'.format(spec['perl'].prefix),
'--with-doxygen={0}'.format(spec['doxygen'].prefix)]
return args
# TODO(<EMAIL>): Submit PR upstream that implements
# install phase in autotools
def install(self, spec, prefix):
mkdirp(prefix.lib)
install('libROM.a', join_path(prefix.lib, 'libROM.a'))
mkdirp(prefix.include)
install('*.h', prefix.include)
mkdirp(prefix.share)
install('libROM_Design_and_Theory.pdf',
join_path(prefix.share,
'libROM_Design_and_Theory.pdf'))
install_tree('docs', prefix.share.docs)
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/ibm-databroker/package.py
|
<filename>var/spack/repos/builtin/packages/ibm-databroker/package.py
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class IbmDatabroker(CMakePackage, PythonPackage):
"""The Data Broker (DBR) is a distributed, in-memory container of key-value
stores enabling applications in a workflow to exchange data through one or
more shared namespaces. Thanks to a small set of primitives, applications
in a workflow deployed in a (possibly) shared nothing distributed cluster,
can easily share and exchange data and messages with applications."""
homepage = "https://github.com/IBM/data-broker"
git = "https://github.com/IBM/data-broker"
url = 'https://github.com/IBM/data-broker/archive/0.6.1.tar.gz'
# IBM dev team should take over
maintainers = ['bhatiaharsh']
version('master', branch='master')
version('0.7.0', sha256='5460fa1c5c05ad25c759b2ee4cecee92980d4dde5bc7c5f6da9242806cf22bb8')
version('0.6.1', sha256='2c7d6c6a269d4ae97aad4d770533e742f367da84758130c283733f25df83e535')
version('0.6.0', sha256='5856209d965c923548ebb69119344f1fc596d4c0631121b230448cc91bac4290')
variant('python', default=False, description='Build Python bindings')
depends_on('cmake@2.8:', type='build')
depends_on('redis@5.0.2:', type='run')
depends_on('libevent@2.1.8', type=('build', 'run'))
extends('python', when='+python')
depends_on('python@3.7:', when='+python')
depends_on('py-setuptools', when='+python')
patch('fixes_in_v0.6.1.patch', when='@0.6.1')
patch('fixes_in_v0.7.0.patch', when='@0.7.0')
def cmake_args(self):
args = []
args.append('-DDEFAULT_BE=redis')
if '+python' in self.spec:
args.append('-DPYDBR=1')
return args
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/r-matrixgenerics/package.py
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RMatrixgenerics(RPackage):
"""S4 Generic Summary Statistic Functions that Operate on Matrix-Like
Objects.
S4 generic functions modeled after the 'matrixStats' API for alternative
matrix implementations. Packages with alternative matrix implementation can
depend on this package and implement the generic functions that are defined
here for a useful set of row and column summary statistics. Other package
developers can import this package and handle a different matrix
implementations without worrying about incompatibilities."""
bioc = "MatrixGenerics"
version('1.6.0', commit='<PASSWORD>')
version('1.2.1', commit='<PASSWORD>')
depends_on('r-matrixstats@0.57.1:', type=('build', 'run'))
depends_on('r-matrixstats@0.60.1:', type=('build', 'run'), when='@1.6.0:')
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/perl-pdf-api2/package.py
|
<reponame>player1537-forks/spack
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class PerlPdfApi2(PerlPackage):
"""Facilitates the creation and modification of PDF files"""
homepage = "https://metacpan.org/pod/PDF::API2"
url = "http://search.cpan.org/CPAN/authors/id/S/SS/SSIMMS/PDF-API2-2.033.tar.gz"
version('2.033', sha256='9c0866ec1a3053f73afaca5f5cdbe6925903b4ce606f4bf4ac317731a69d27a0')
depends_on('perl-test-exception', type=('build', 'run'))
depends_on('perl-test-memory-cycle', type=('build', 'run'))
depends_on('perl-font-ttf', type=('build', 'run'))
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/cppcoro/package.py
|
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Cppcoro(CMakePackage):
"""A library of C++ coroutine abstractions."""
homepage = "https://github.com/andreasbuhr/cppcoro"
git = "https://github.com/andreasbuhr/cppcoro.git"
maintainers = ['pbrady']
version('develop', branch="master")
version('2021-01-13', commit='<PASSWORD>')
depends_on('cmake@3.12:', type='build')
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/r-terra/package.py
|
<gh_stars>1-10
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RTerra(RPackage):
"""Spatial Data Analysis.
Methods for spatial data analysis with raster and vector data. Raster
methods allow for low-level data manipulation as well as high-level global,
local, zonal, and focal computation. The predict and interpolate methods
facilitate the use of regression type (interpolation, machine learning)
models for spatial prediction, including with satellite remote sensing
data. Processing of very large files is supported. See the manual and
tutorials on <https://rspatial.org/terra/> to get started. 'terra' is very
similar to the 'raster' package; but 'terra' can do more, is easier to use,
and it is faster."""
cran = "terra"
version('1.5-17', sha256='e7ac57d1712d280616a4b5a85cd915b2b3e24fe08ee044b740588d884e6be6e7')
version('1.5-12', sha256='865cc14ee8c3239037c08170df4011eed27cf638ac1d05f0b7cd704abf97cc19')
version('1.4-22', sha256='b8eccfa36764577248d7b390e24af6db65fb8824c07f9b782bd6b83c4d2b3976')
depends_on('r@3.5.0:', type=('build', 'run'))
depends_on('r-rcpp', type=('build', 'run'))
depends_on('gdal@2.2.3:')
depends_on('geos@3.4.0:')
depends_on('proj@4.9.3:')
depends_on('sqlite')
|
player1537-forks/spack
|
lib/spack/spack/modules/__init__.py
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
"""This package contains code for creating environment modules, which can
include TCL non-hierarchical modules, LUA hierarchical modules, and others.
"""
from __future__ import absolute_import
from .common import disable_modules
from .lmod import LmodModulefileWriter
from .tcl import TclModulefileWriter
__all__ = [
'TclModulefileWriter',
'LmodModulefileWriter',
'disable_modules'
]
module_types = {
'tcl': TclModulefileWriter,
'lmod': LmodModulefileWriter
}
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/r-somaticsignatures/package.py
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RSomaticsignatures(RPackage):
"""Somatic Signatures.
The SomaticSignatures package identifies mutational signatures of single
nucleotide variants (SNVs). It provides a infrastructure related to the
methodology described in Nik-Zainal (2012, Cell), with flexibility in
the matrix decomposition algorithms."""
bioc = "SomaticSignatures"
version('2.30.0', commit='<PASSWORD>')
version('2.26.0', commit='9d4bed6e118ac76755ffb7abd058b09bac58a9d7')
version('2.20.0', commit='<PASSWORD>')
version('2.18.0', commit='facccd67eee5202fcbe6ad32e667546546e7ccff')
version('2.16.0', commit='<PASSWORD>')
version('2.14.0', commit='b12d24f86e96a7c6a17cbbad21ca14fa3aa7c60f')
version('2.12.1', commit='<PASSWORD>')
depends_on('r@3.1.0:', type=('build', 'run'))
depends_on('r-variantannotation', type=('build', 'run'))
depends_on('r-genomicranges', type=('build', 'run'))
depends_on('r-nmf', type=('build', 'run'))
depends_on('r-s4vectors', type=('build', 'run'))
depends_on('r-iranges', type=('build', 'run'))
depends_on('r-genomeinfodb', type=('build', 'run'))
depends_on('r-biostrings', type=('build', 'run'))
depends_on('r-ggplot2', type=('build', 'run'))
depends_on('r-ggbio', type=('build', 'run'))
depends_on('r-reshape2', type=('build', 'run'))
depends_on('r-nmf', type=('build', 'run'), when='@2.26.0:')
depends_on('r-pcamethods', type=('build', 'run'))
depends_on('r-biobase', type=('build', 'run'))
depends_on('r-proxy', type=('build', 'run'))
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/mcl/package.py
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Mcl(AutotoolsPackage):
"""The MCL algorithm is short for the Markov Cluster Algorithm, a fast
and scalable unsupervised cluster algorithm for graphs (also known
as networks) based on simulation of (stochastic) flow in graphs."""
homepage = "https://www.micans.org/mcl/index.html"
url = "https://www.micans.org/mcl/src/mcl-14-137.tar.gz"
version('14-137', sha256='b5786897a8a8ca119eb355a5630806a4da72ea84243dba85b19a86f14757b497')
@when('%gcc@10:')
def patch(self):
filter_file('^dim', 'extern dim', 'src/impala/iface.h')
filter_file('^double', 'extern double', 'src/impala/iface.h')
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/py-poetry/package.py
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class PyPoetry(PythonPackage):
"""Python dependency management and packaging made easy."""
homepage = "https://python-poetry.org/"
pypi = "poetry/poetry-1.1.12.tar.gz"
version('1.1.12', sha256='5c66e2357fe37b552462a88b7d31bfa2ed8e84172208becd666933c776252567')
depends_on('python@2.7,3.5:3', type=('build', 'run'))
depends_on('py-poetry-core@1.0.7:1.0', type=('build', 'run'))
depends_on('py-cleo@0.8.1:0.8', type=('build', 'run'))
depends_on('py-clikit@0.6.2:0.6', type=('build', 'run'))
depends_on('py-crashtest@0.3.0:0.3', when='^python@3.6:3', type=('build', 'run'))
depends_on('py-requests@2.18:2', type=('build', 'run'))
depends_on('py-cachy@0.3.0:0.3', type=('build', 'run'))
depends_on('py-requests-toolbelt@0.9.1:0.9', type=('build', 'run'))
depends_on('py-cachecontrol@0.12.4:0.12+filecache', when='^python@:3.5', type=('build', 'run'))
depends_on('py-cachecontrol@0.12.9:0.12+filecache', when='^python@3.6:3', type=('build', 'run'))
depends_on('py-pkginfo@1.4:1', type=('build', 'run'))
depends_on('py-html5lib@1.0:1', type=('build', 'run'))
depends_on('py-shellingham@1.1:1', type=('build', 'run'))
depends_on('py-tomlkit@0.7:0', type=('build', 'run'))
depends_on('py-pexpect@4.7:4', type=('build', 'run'))
depends_on('py-packaging@20.4:20', type=('build', 'run'))
depends_on('py-virtualenv@20.0.26:20', type=('build', 'run'))
depends_on('py-typing@3.6:3', when='^python@2.7', type=('build', 'run'))
depends_on('py-pathlib2@2.3:2', when='^python@2.7', type=('build', 'run'))
depends_on('py-futures@3.3:3', when='^python@2.7', type=('build', 'run'))
depends_on('py-glob2@0.6.0:0.6', when='^python@2.7', type=('build', 'run'))
depends_on('py-functools32@3.2.3:3', when='^python@2.7', type=('build', 'run'))
depends_on('py-keyring@18.0.1:18', when='^python@2.7', type=('build', 'run'))
depends_on('py-keyring@20.0.1:20', when='^python@3.5', type=('build', 'run'))
depends_on('py-keyring@21.2.0:21', when='^python@3.6:3', type=('build', 'run'))
depends_on('py-subprocess32@3.5:3', when='^python@2.7', type=('build', 'run'))
depends_on('py-importlib-metadata@1.6:1', when='^python@:3.7', type=('build', 'run'))
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/py-build/package.py
|
<filename>var/spack/repos/builtin/packages/py-build/package.py
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class PyBuild(PythonPackage):
"""A simple, correct PEP517 package builder."""
homepage = "https://github.com/pypa/build"
pypi = "build/build-0.7.0.tar.gz"
version('0.7.0', sha256='1aaadcd69338252ade4f7ec1265e1a19184bf916d84c9b7df095f423948cb89f')
variant('virtualenv', default=False, description='Install optional virtualenv dependency')
depends_on('python@3.6:', type=('build', 'run'))
depends_on('py-setuptools', type='build')
depends_on('py-packaging@19:', type=('build', 'run'))
depends_on('py-pep517@0.9.1:', type=('build', 'run'))
depends_on('py-tomli@1:', type=('build', 'run'))
depends_on('py-colorama', when='platform=windows', type=('build', 'run'))
depends_on('py-importlib-metadata@0.22:', when='^python@:3.7', type=('build', 'run'))
depends_on('py-virtualenv@20.0.35:', when='+virtualenv', type=('build', 'run'))
# https://github.com/pypa/build/issues/266
# https://github.com/pypa/build/issues/406
patch('isolation.patch', when='@0.7.0')
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/r-memuse/package.py
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RMemuse(RPackage):
"""Memory Estimation Utilities.
How much ram do you need to store a 100,000 by 100,000 matrix? How much ram
is your current R session using? How much ram do you even have? Learn the
scintillating answer to these and many more such questions with the
'memuse' package."""
cran = "memuse"
maintainers = ['dorton21']
version('4.2-1', sha256='f5e9dbaad4efbbfe219a93f446e318a00cad5b294bfc60ca2146eca894b47cf3')
version('4.1-0', sha256='58d6d1ca5d6bd481f4ed299eff6a9d5660eb0f8db1abe54c49e144093cba72ad')
depends_on('r@3.0.0:', type=('build', 'run'))
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/r-pheatmap/package.py
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RPheatmap(RPackage):
"""Pretty Heatmaps.
Implementation of heatmaps that offers more control over dimensions and
appearance."""
cran = "pheatmap"
version('1.0.12', sha256='579d96ee0417203b85417780eca921969cda3acc210c859bf9dfeff11539b0c1')
depends_on('r@2.0:', type=('build', 'run'))
depends_on('r-rcolorbrewer', type=('build', 'run'))
depends_on('r-scales', type=('build', 'run'))
depends_on('r-gtable', type=('build', 'run'))
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/gengeo/package.py
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Gengeo(AutotoolsPackage):
"""GenGeo is a library of tools for creating complex particle
geometries for use in ESyS-Particle simulations. GenGeo is a standalone
application with a Python API that creates geometry files suitable for
importing into ESyS-Particle simulations. The functionality of GenGeo far
exceeds the in-simulation geometry creation utilities
provided by ESyS-Particle itself."""
homepage = "https://launchpad.net/esys-particle/gengeo"
url = "https://launchpad.net/esys-particle/trunk/3.0-alpha/+download/gengeo-163.tar.gz"
maintainers = ['dorton21']
version('163', sha256='9c896d430d8f315a45379d2b82e7d374f36259af66a745bfdee4c022a080d34d')
extends('python')
depends_on('autoconf', type='build')
depends_on('automake', type='build')
depends_on('libtool', type='build')
depends_on('m4', type='build')
depends_on('boost+python')
depends_on('openmpi')
def autoreconf(self, spec, prefix):
autogen = Executable('./autogen.sh')
autogen()
def configure_args(self):
args = [
'--verbose',
'--with-boost=' + self.spec['boost'].prefix,
'CCFLAGS=-fpermissive',
'CXXFLAGS=-fpermissive',
]
return args
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/libnbc/package.py
|
<gh_stars>10-100
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Libnbc(AutotoolsPackage):
"""LibNBC is a prototypic implementation of a nonblocking
interface for MPI collective operations. Based on ANSI C and
MPI-1, it supports all MPI-1 collective operations in a
nonblocking manner. LibNBC is distributed under the BSD license.
"""
homepage = "http://unixer.de/research/nbcoll/libnbc/"
url = "http://unixer.de/research/nbcoll/libnbc/libNBC-1.1.1.tar.gz"
version('1.1.1', sha256='63aa5f75f84c191da0688cb551ebd0e9e46928edfba350b2a534eb0c704dd9c3')
depends_on("mpi")
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/transabyss/package.py
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Transabyss(Package):
"""De novo assembly of RNAseq data using ABySS"""
homepage = "https://www.bcgsc.ca/platform/bioinfo/software/trans-abyss"
url = "https://www.bcgsc.ca/platform/bioinfo/software/trans-abyss/releases/1.5.5/transabyss-1.5.5.zip"
version('1.5.5', sha256='7804961c13296c587a1b22180dd3f02091a4494cbbd04fc33c2060599caadb0b')
depends_on('abyss@1.5.2')
depends_on('python@2.7.6:', type=('build', 'run'))
depends_on('py-python-igraph@0.7.0:', type=('build', 'run'))
depends_on('blat')
def install(self, spec, prefix):
install('transabyss', prefix)
install('transabyss-merge', prefix)
install_tree('bin', prefix.bin)
install_tree('utilities', prefix.utilities)
|
player1537-forks/spack
|
lib/spack/spack/test/container/docker.py
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import pytest
import spack.container.writers as writers
def test_manifest(minimal_configuration):
writer = writers.create(minimal_configuration)
manifest_str = writer.manifest
for line in manifest_str.split('\n'):
assert 'echo' in line
def test_build_and_run_images(minimal_configuration):
writer = writers.create(minimal_configuration)
# Test the output of run property
run = writer.run
assert run.image == 'ubuntu:18.04'
# Test the output of the build property
build = writer.build
assert build.image == 'spack/ubuntu-bionic:latest'
def test_packages(minimal_configuration):
# In this minimal configuration we don't have packages
writer = writers.create(minimal_configuration)
assert writer.os_packages_build is None
assert writer.os_packages_final is None
# If we add them a list should be returned
pkgs = ['libgomp1']
minimal_configuration['spack']['container']['os_packages'] = {
'final': pkgs
}
writer = writers.create(minimal_configuration)
p = writer.os_packages_final
assert p.update
assert p.install
assert p.clean
assert p.list == pkgs
def test_ensure_render_works(minimal_configuration, default_config):
# Here we just want to ensure that nothing is raised
writer = writers.create(minimal_configuration)
writer()
def test_strip_is_set_from_config(minimal_configuration):
writer = writers.create(minimal_configuration)
assert writer.strip is True
minimal_configuration['spack']['container']['strip'] = False
writer = writers.create(minimal_configuration)
assert writer.strip is False
def test_extra_instructions_is_set_from_config(minimal_configuration):
writer = writers.create(minimal_configuration)
assert writer.extra_instructions == (None, None)
test_line = 'RUN echo Hello world!'
e = minimal_configuration['spack']['container']
e['extra_instructions'] = {}
e['extra_instructions']['build'] = test_line
writer = writers.create(minimal_configuration)
assert writer.extra_instructions == (test_line, None)
e['extra_instructions']['final'] = test_line
del e['extra_instructions']['build']
writer = writers.create(minimal_configuration)
assert writer.extra_instructions == (None, test_line)
def test_custom_base_images(minimal_configuration):
"""Test setting custom base images from configuration file"""
minimal_configuration['spack']['container']['images'] = {
'build': 'custom-build:latest',
'final': 'custom-final:latest'
}
writer = writers.create(minimal_configuration)
assert writer.bootstrap.image is None
assert writer.build.image == 'custom-build:latest'
assert writer.run.image == 'custom-final:latest'
@pytest.mark.parametrize('images_cfg,expected', [
({'os': 'amazonlinux:2', 'spack': 'develop'}, {
'bootstrap_image': 'amazonlinux:2',
'build_image': 'bootstrap',
'final_image': 'amazonlinux:2'
})
])
def test_base_images_with_bootstrap(
minimal_configuration, images_cfg, expected
):
"""Check that base images are computed correctly when a
bootstrap phase is present
"""
minimal_configuration['spack']['container']['images'] = images_cfg
writer = writers.create(minimal_configuration)
for property_name, value in expected.items():
assert getattr(writer, property_name) == value
def test_error_message_invalid_os(minimal_configuration):
minimal_configuration['spack']['container']['images']['os'] = 'invalid:1'
with pytest.raises(ValueError, match='invalid operating system'):
writers.create(minimal_configuration)
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/dataspaces/package.py
|
<filename>var/spack/repos/builtin/packages/dataspaces/package.py
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import six
from spack import *
def is_string(x):
"""validate a string"""
try:
return isinstance(x, six.string_types)
except ValueError:
return False
class Dataspaces(AutotoolsPackage):
"""an extreme scale data management framework."""
homepage = "http://www.dataspaces.org"
url = "https://dataspaces.rdi2.rutgers.edu/downloads/dataspaces-1.6.2.tar.gz"
version('1.8.0', sha256='7f204bb3c03c2990f5a2d76a29185466b584793c63ada03e5e694627e6060605')
version('1.6.2', sha256='3c43d551c1e8198a4ab269c83928e1dc6f8054e6d41ceaee45155d91a48cf9bf')
variant('dimes',
default=False,
description='enabled DIMES transport mode')
variant('cray-drc',
default=False,
description='using Cray Dynamic Credentials library')
variant('gni-cookie',
default='0x5420000',
description='Cray UGNI communication token',
values=is_string)
variant('ptag',
default='250',
description='Cray UGNI protection tag',
values=is_string)
variant('mpi',
default=True,
description='Use MPI for collective communication')
depends_on('m4', type='build')
depends_on('automake', type='build')
depends_on('autoconf', type='build')
depends_on('libtool', type='build')
depends_on('mpi', when='+mpi')
def autoreconf(self, spec, prefix):
bash = which('bash')
bash('./autogen.sh')
def setup_build_environment(self, env):
if self.spec.satisfies('+mpi'):
env.set('CC', self.spec['mpi'].mpicc)
env.set('FC', self.spec['mpi'].mpifc)
env.set('CFLAGS', self.compiler.cc_pic_flag)
if '%gcc@10:' in self.spec:
env.set('FCFLAGS', '-fallow-argument-mismatch')
def configure_args(self):
args = []
cookie = self.spec.variants['gni-cookie'].value
ptag = self.spec.variants['ptag'].value
if self.spec.satisfies('+dimes'):
args.append('--enable-dimes')
if self.spec.satisfies('+cray-drc'):
args.append('--enable-drc')
else:
args.append('--with-gni-cookie=%s' % cookie)
args.append('--with-gni-ptag=%s' % ptag)
return args
|
player1537-forks/spack
|
lib/spack/spack/util/py2.py
|
<filename>lib/spack/spack/util/py2.py
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import base64
from six import PY3, binary_type, text_type
def b32encode(digest):
# type: (binary_type) -> text_type
b32 = base64.b32encode(digest)
if PY3:
return b32.decode()
return b32
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/opus/package.py
|
<reponame>player1537-forks/spack
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Opus(AutotoolsPackage):
"""Opus is a totally open, royalty-free, highly versatile audio codec."""
homepage = "https://opus-codec.org/"
url = "http://downloads.xiph.org/releases/opus/opus-1.1.4.tar.gz"
version('1.3.1', sha256='65b58e1e25b2a114157014736a3d9dfeaad8d41be1c8179866f144a2fb44ff9d')
version('1.1.4', sha256='9122b6b380081dd2665189f97bfd777f04f92dc3ab6698eea1dbb27ad59d8692')
version('1.1.3', sha256='58b6fe802e7e30182e95d0cde890c0ace40b6f125cffc50635f0ad2eef69b633')
version('1.1.2', sha256='0e290078e31211baa7b5886bcc8ab6bc048b9fc83882532da4a1a45e58e907fd')
version('1.1.1', sha256='9b84ff56bd7720d5554103c557664efac2b8b18acc4bbcc234cb881ab9a3371e')
version('1.1', sha256='b9727015a58affcf3db527322bf8c4d2fcf39f5f6b8f15dbceca20206cbe1d95')
version('1.0.3', sha256='191a089c92dbc403de6980463dd3604b65beb12d283c607e246c8076363cb49c')
version('1.0.2', sha256='da615edbee5d019c1833071d69a4782c19f178cf9ca1401375036ecef25cd78a')
version('1.0.1', sha256='80fa5c3caf2ac0fd68f8a22cce1564fc46b368c773a17554887d0066fe1841ef')
version('1.0.0', sha256='9250fcc74472d45c1e14745542ec9c8d09982538aefed56962495614be3e0d2d')
version('0.9.14', sha256='b1cad6846a8f819a141009fe3f8f10c946e8eff7e9c2339cd517bb136cc59eae')
version('0.9.10', sha256='4e379a98ba95bbbfe9087ef10fdd05c8ac9060b6d695f587ea82a7b43a0df4fe')
version('0.9.9', sha256='2f62359f09151fa3b242040dc9b4c5b6bda15557c5daea59c8420f1a2ff328b7')
version('0.9.8', sha256='4aa30d2e0652ffb4a7a22cc8a29c4ce78267626f560a2d9213b1d2d4e618cf36')
version('0.9.7', sha256='1b69772c31c5cbaa43d1dfa5b1c495fc29712e8e0ff69d6f8ad46459e5c6715f')
version('0.9.6', sha256='3bfaeb25f4b4a625a0bc994d6fc6f6776a05193f60099e0a99f7530c6b256309')
version('0.9.5', sha256='53801066fa97329768e7b871fd1495740269ec46802e1c9051aa7e78c6edee5b')
version('0.9.3', sha256='d916e34c18a396eb7dffc47af754f441af52a290b761e20db9aedb65928c699e')
version('0.9.2', sha256='6e85c1b57e1d7b7dfe2928bf92586b96b73a9067e054ede45bd8e6d24bd30582')
version('0.9.1', sha256='206221afc47b87496588013bd4523e1e9f556336c0813f4372773fc536dd4293')
version('0.9.0', sha256='b2f75c4ac5ab837845eb028413fae2a28754bfb0a6d76416e2af1441ef447649')
depends_on('libvorbis')
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/py-pyrect/package.py
|
<filename>var/spack/repos/builtin/packages/py-pyrect/package.py
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class PyPyrect(PythonPackage):
"""PyRect is a simple module with a Rect class for
Pygame-like rectangular areas."""
homepage = "https://github.com/asweigart/pyrect"
pypi = "PyRect/PyRect-0.1.4.tar.gz"
version('0.1.4', sha256='3b2fa7353ce32a11aa6b0a15495968d2a763423c8947ae248b92c037def4e202')
depends_on('py-setuptools', type='build')
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/py-pyfits/package.py
|
<gh_stars>10-100
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class PyPyfits(PythonPackage):
"""The PyFITS module is a Python library providing access to
FITS(Flexible Image Transport System) files."""
homepage = "https://github.com/spacetelescope/pyfits"
url = "https://github.com/spacetelescope/PyFITS/archive/3.5.tar.gz"
version('3.5', sha256='fd32596ee09170a70ddc87d0dfc5503d860ef6b68abcff486d7aa6993dff6162')
depends_on('py-setuptools', type='build')
depends_on('py-numpy', type=('build', 'run'))
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/py-azureml-pipeline-steps/package.py
|
<reponame>player1537-forks/spack
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
class PyAzuremlPipelineSteps(PythonPackage):
"""Represents a unit of computation in azureml-pipeline."""
homepage = "https://docs.microsoft.com/en-us/azure/machine-learning/service/"
url = "https://pypi.io/packages/py3/a/azureml_pipeline_steps/azureml_pipeline_steps-1.11.0-py3-none-any.whl"
version('1.23.0', sha256='72154c2f75624a1e7500b8e2239ae1354eeedf66d2cabb11e213b7eb80aedddb', expand=False)
version('1.11.0', sha256='674317d9c74ec4cb05e443f50de1732e14dc4519cbe2743a44f8db0bc5e71214', expand=False)
version('1.8.0', sha256='3310674207ed457a26fb978e7168e400306c695f7f854f354dee9d5c7c81304c', expand=False)
depends_on('python@3:', type=('build', 'run'))
depends_on('py-azureml-train-core@1.23.0:1.23', when='@1.23.0', type=('build', 'run'))
depends_on('py-azureml-train-automl-client@1.23.0:1.23', when='@1.23.0', type=('build', 'run'))
depends_on('py-azureml-pipeline-core@1.23.0:1.23', when='@1.23.0', type=('build', 'run'))
depends_on('py-azureml-train-core@1.11.0:1.11', when='@1.11.0', type=('build', 'run'))
depends_on('py-azureml-train-automl-client@1.11.0:1.11', when='@1.11.0', type=('build', 'run'))
depends_on('py-azureml-pipeline-core@1.11.0:1.11', when='@1.11.0', type=('build', 'run'))
depends_on('py-azureml-train-core@1.8.0:1.8', when='@1.8.0', type=('build', 'run'))
depends_on('py-azureml-train-automl-client@1.8.0:1.8', when='@1.8.0', type=('build', 'run'))
depends_on('py-azureml-pipeline-core@1.8.0:1.8', when='@1.8.0', type=('build', 'run'))
|
player1537-forks/spack
|
var/spack/repos/builtin.mock/packages/multi-provider-mpi/package.py
|
<gh_stars>10-100
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class MultiProviderMpi(Package):
"""This is a fake MPI package used to test packages providing multiple
virtuals at the same version."""
homepage = "http://www.spack-fake-mpi.org"
url = "http://www.spack-fake-mpi.org/downloads/multi-mpi-1.0.tar.gz"
version('2.0.0', '0123456789abcdef0123456789abcdef')
version('1.10.3', '0123456789abcdef0123456789abcdef')
version('1.10.2', '0123456789abcdef0123456789abcdef')
version('1.10.1', '0123456789abcdef0123456789abcdef')
version('1.10.0', '0123456789abcdef0123456789abcdef')
version('1.8.8', '0123456789abcdef0123456789abcdef')
version('1.6.5', '0123456789abcdef0123456789abcdef')
provides('mpi@3.1', when='@2.0.0')
provides('mpi@3.0', when='@1.10.3')
provides('mpi@3.0', when='@1.10.2')
provides('mpi@3.0', when='@1.10.1')
provides('mpi@3.0', when='@1.10.0')
provides('mpi@3.0', when='@1.8.8')
provides('mpi@2.2', when='@1.6.5')
|
player1537-forks/spack
|
var/spack/repos/builtin/packages/r-seuratobject/package.py
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RSeuratobject(RPackage):
"""Data Structures for Single Cell Data.
Defines S4 classes for single-cell genomic data and associated information,
such as dimensionality reduction embeddings, nearest-neighbor graphs, and
spatially-resolved coordinates. Provides data access methods and R-native
hooks to ensure the Seurat object is familiar to other R users. See Satija
R, <NAME>, <NAME>, et al (2015) <doi:10.1038/nbt.3192>, <NAME>,
<NAME>, <NAME>, et al (2015) <doi:10.1016/j.cell.2015.05.002>, and Stuart
T, <NAME>, et al (2019) <doi:10.1016/j.cell.2019.05.031> for more
details."""
cran = "SeuratObject"
version('4.0.4', sha256='585261b7d2045193accf817a29e2e3356e731f57c554bed37d232fa49784088c')
depends_on('r@4.0.0:', type=('build', 'run'))
depends_on('r-matrix@1.3-3:', type=('build', 'run'))
depends_on('r-rcpp@1.0.5:', type=('build', 'run'))
depends_on('r-rlang@0.4.7:', type=('build', 'run'))
depends_on('r-rcppeigen', type=('build', 'run'))
|
Subsets and Splits
No community queries yet
The top public SQL queries from the community will appear here once available.