repo_id stringclasses 409
values | prefix large_stringlengths 34 36.3k | target large_stringlengths 1 498 | assertion_type stringclasses 31
values | difficulty stringclasses 8
values | test_file stringlengths 10 121 | test_function stringlengths 1 104 | test_class stringlengths 0 51 | lineno int32 2 11.3k | commit_idx int32 |
|---|---|---|---|---|---|---|---|---|---|
SALib/SALib | import os
from os.path import join as pth_join
import subprocess
salib_cli = "salib"
ishigami_fp = "./src/SALib/test_functions/params/Ishigami.txt"
test_file = "test.txt"
test_data = pth_join("./tests", "data", test_file)
def teardown_function(func):
# Removes the test file if it was created.
files = os.listd... | str(result) | assert | func_call | tests/test_cli_sample.py | test_cli_entry | 22 | null | |
SALib/SALib | import pytest
import copy
import numpy as np
import pandas as pd
from SALib import ProblemSpec
from SALib.test_functions import Ishigami
def test_single_parameter():
"""Ensures error is raised when attempting to conduct SA on a single parameter."""
sp = ProblemSpec({"names": ["x1"], "bounds": [[-1, 1]], "ou... | ValueError) | pytest.raises | variable | tests/test_problem_spec.py | test_single_parameter | 207 | null | |
SALib/SALib | from pytest import raises
from numpy.testing import assert_equal, assert_allclose
import numpy as np
from scipy import stats
import pytest
from SALib.util import (
read_param_file,
_scale_samples,
_unscale_samples,
compute_groups_matrix,
)
from SALib.sample import latin
def setup_param_file_group_dis... | 2) | assert_* | numeric_literal | tests/test_util.py | test_readfile | 64 | null | |
SALib/SALib | from pytest import raises
from numpy.testing import assert_equal, assert_allclose
import numpy as np
from scipy import stats
import pytest
from SALib.util import (
read_param_file,
_scale_samples,
_unscale_samples,
compute_groups_matrix,
)
from SALib.sample import latin
def setup_param_file_group_dis... | ["Test1", "Test2"]) | assert_* | collection | tests/test_util.py | test_readfile | 65 | null | |
SALib/SALib | from pytest import raises, mark
from numpy.testing import assert_equal, assert_allclose
import numpy as np
from scipy.stats import norm
from SALib.analyze import sobol
from SALib.sample import sobol_sequence, sobol as sobol_sampler
from SALib.test_functions import Ishigami, Sobol_G
from SALib.util import read_param_fi... | expected) | assert_* | variable | tests/test_sobol.py | test_sobol_sequence | 36 | null | |
SALib/SALib | from pytest import raises, mark
from numpy.testing import assert_equal, assert_allclose
import numpy as np
from scipy.stats import norm
from SALib.analyze import sobol
from SALib.sample import sobol_sequence, sobol as sobol_sampler
from SALib.test_functions import Ishigami, Sobol_G
from SALib.util import read_param_fi... | [N * (2 * D + 2), D]) | assert_* | collection | tests/test_sobol.py | test_sample_size_second_order | 43 | null | |
SALib/SALib | from pytest import raises, mark
from numpy.testing import assert_equal, assert_allclose
import numpy as np
from scipy.stats import norm
from SALib.analyze import sobol
from SALib.sample import sobol_sequence, sobol as sobol_sampler
from SALib.test_functions import Ishigami, Sobol_G
from SALib.util import read_param_fi... | [0.55, 0.44, 0.24]) | assert_* | collection | tests/test_sobol.py | test_parallel_first_order | 116 | null | |
SALib/SALib | import pytest
import numpy as np
from SALib import ProblemSpec
def example_func(x):
"""Example linear test function."""
return np.sum(x, axis=1)
@pytest.mark.filterwarnings("ignore::DeprecationWarning")
def test_sobol_group_analysis():
"""Ensure valid groupings are returned from the Sobol analysis method... | 1 | assert | numeric_literal | tests/test_groups.py | test_sobol_group_analysis | 45 | null | |
SALib/SALib | import pytest
import copy
import numpy as np
import pandas as pd
from SALib import ProblemSpec
from SALib.test_functions import Ishigami
@pytest.mark.filterwarnings("ignore::DeprecationWarning")
def test_sp_setters():
"""Test sample and result setters."""
sp = ProblemSpec(
{
"names": ["x... | None | assert | none_literal | tests/test_problem_spec.py | test_sp_setters | 86 | null | |
SALib/SALib | import numpy as np
import pandas as pd
from SALib.sample import (
sobol as sobol_sample,
morris as morris_sample,
finite_diff,
fast_sampler,
ff as ff_sample,
latin,
)
from SALib.analyze import sobol, morris, dgsm, fast, ff, rbd_fast
from SALib.test_functions import Ishigami, Sobol_G
def test_fa... | col_names | assert | variable | tests/test_to_df.py | test_fast_to_df | 146 | null | |
SALib/SALib | from pytest import raises, fixture
import numpy as np
from numpy.testing import assert_allclose, assert_equal
from SALib.analyze.morris import (
analyze,
_compute_mu_star_confidence,
_compute_elementary_effects,
_reorganize_output_matrix,
_compute_grouped_metric,
_compute_grouped_sigma,
_c... | desired_names) | assert_* | variable | tests/test_analyze_morris.py | test_analysis_of_morris_results | 124 | null | |
SALib/SALib | import numpy as np
import pandas as pd
from SALib.sample import (
sobol as sobol_sample,
morris as morris_sample,
finite_diff,
fast_sampler,
ff as ff_sample,
latin,
)
from SALib.analyze import sobol, morris, dgsm, fast, ff, rbd_fast
from SALib.test_functions import Ishigami, Sobol_G
def test_dg... | set(params) | assert | func_call | tests/test_to_df.py | test_dgsm_to_df | 111 | null | |
SALib/SALib | from pytest import raises, mark
from numpy.testing import assert_equal, assert_allclose
import numpy as np
from scipy.stats import norm
from SALib.analyze import sobol
from SALib.sample.sobol import sample as sobol_sample
from SALib.sample import sobol_sequence
from SALib.test_functions import Ishigami, Sobol_G
from S... | [0.31, 0.44, 0.00]) | assert_* | collection | tests/test_sp_sobol.py | test_parallel_first_order | 116 | null | |
SALib/SALib | import numpy as np
import pandas as pd
from SALib.sample import (
sobol as sobol_sample,
morris as morris_sample,
finite_diff,
fast_sampler,
ff as ff_sample,
latin,
)
from SALib.analyze import sobol, morris, dgsm, fast, ff, rbd_fast
from SALib.test_functions import Ishigami, Sobol_G
def test_ff... | inter_index | assert | variable | tests/test_to_df.py | test_ff_to_df | 196 | null | |
SALib/SALib | from numpy.testing import assert_equal, assert_allclose
from pytest import raises, fixture, warns, mark
import numpy as np
import warnings
from SALib.sample.morris.morris import (
sample,
_check_group_membership,
_check_if_num_levels_is_even,
_compute_optimised_trajectories,
_generate_p_star,
... | np.array([[1, 0], [1, 0], [0, 1]], dtype=int)) | assert_* | func_call | tests/sample/morris/test_morris.py | test_group_in_param_file_read | 96 | null | |
SALib/SALib | from pytest import fixture, mark
import numpy as np
from numpy.testing import assert_allclose
from SALib.analyze import delta, dgsm, fast, rbd_fast, sobol, morris, hdmr
from SALib.sample import (
fast_sampler,
finite_diff,
latin,
saltelli,
sobol as sobol_sampler,
)
from SALib.sample.morris import ... | [0.55, 0.44]) | assert_* | collection | tests/test_regression.py | test_regression_sobol_groups | 281 | null | |
SALib/SALib | from SALib.sample.morris import SampleMorris, LocalOptimisation, BruteForce
from SALib.sample.morris.morris import _sample_morris
from SALib.util import read_param_file, handle_seed
import numpy as np
from numpy.testing import assert_equal, assert_allclose
import numpy.random as rd
import pytest
from pytest import f... | 6.18) | assert_* | numeric_literal | tests/sample/morris/test_morris_strategies.py | test_distance | TestSharedMethods | 92 | null |
SALib/SALib | from pytest import raises
from numpy.testing import assert_equal, assert_allclose
import numpy as np
from scipy import stats
import pytest
from SALib.util import (
read_param_file,
_scale_samples,
_unscale_samples,
compute_groups_matrix,
)
from SALib.sample import latin
def setup_param_file_group_dis... | 3) | assert_* | numeric_literal | tests/test_util.py | test_readfile_group_dist | 75 | null | |
SALib/SALib | import numpy as np
import pandas as pd
from SALib.sample import (
sobol as sobol_sample,
morris as morris_sample,
finite_diff,
fast_sampler,
ff as ff_sample,
latin,
)
from SALib.analyze import sobol, morris, dgsm, fast, ff, rbd_fast
from SALib.test_functions import Ishigami, Sobol_G
def test_so... | set( [("x1", "x2"), ("x1", "x3"), ("x2", "x3")] ) | assert | func_call | tests/test_to_df.py | test_sobol_to_df | 81 | null | |
SALib/SALib | import pytest
import copy
import numpy as np
import pandas as pd
from SALib import ProblemSpec
from SALib.test_functions import Ishigami
@pytest.mark.filterwarnings("ignore::DeprecationWarning")
def test_sp_setters():
"""Test sample and result setters."""
sp = ProblemSpec(
{
"names": ["x... | expected_samples | assert | variable | tests/test_problem_spec.py | test_sp_setters | 69 | null | |
SALib/SALib | import numpy as np
import pandas as pd
from SALib.sample import (
sobol as sobol_sample,
morris as morris_sample,
finite_diff,
fast_sampler,
ff as ff_sample,
latin,
)
from SALib.analyze import sobol, morris, dgsm, fast, ff, rbd_fast
from SALib.test_functions import Ishigami, Sobol_G
def test_dg... | set(col_names) | assert | func_call | tests/test_to_df.py | test_dgsm_to_df | 114 | null | |
SALib/SALib | from pytest import raises, fixture
import numpy as np
from numpy.testing import assert_allclose, assert_equal
from SALib.analyze.morris import (
analyze,
_compute_mu_star_confidence,
_compute_elementary_effects,
_reorganize_output_matrix,
_compute_grouped_metric,
_compute_grouped_sigma,
_c... | desired) | assert_* | variable | tests/test_analyze_morris.py | test_compute_elementary_effects | 579 | null | |
SALib/SALib | import pytest
import copy
import numpy as np
import pandas as pd
from SALib import ProblemSpec
from SALib.test_functions import Ishigami
@pytest.mark.filterwarnings("ignore::UserWarning")
@pytest.mark.filterwarnings("ignore::DeprecationWarning")
def test_parallel_multi_output():
from SALib.test_functions import ... | y) | assert_* | variable | tests/test_problem_spec.py | test_parallel_multi_output | 179 | null | |
SALib/SALib | from SALib.sample.morris import SampleMorris, LocalOptimisation, BruteForce
from SALib.sample.morris.morris import _sample_morris
from SALib.util import read_param_file, handle_seed
import numpy as np
from numpy.testing import assert_equal, assert_allclose
import numpy.random as rd
import pytest
from pytest import f... | desired) | assert_* | variable | tests/sample/morris/test_morris_strategies.py | test_distance_of_identical_matrices_is_min | TestSharedMethods | 99 | null |
SALib/SALib | from pytest import fixture, mark
import numpy as np
from numpy.testing import assert_allclose
from SALib.analyze import delta, dgsm, fast, rbd_fast, sobol, morris, hdmr
from SALib.sample import (
fast_sampler,
finite_diff,
latin,
saltelli,
sobol as sobol_sampler,
)
from SALib.sample.morris import ... | [0.20] * 5) | assert_* | collection | tests/test_regression.py | test_regression_hdmr_case1 | 369 | null | |
SALib/SALib | from pytest import raises
from numpy.testing import assert_equal, assert_allclose
import numpy as np
from scipy import stats
import pytest
from SALib.util import (
read_param_file,
_scale_samples,
_unscale_samples,
compute_groups_matrix,
)
from SALib.sample import latin
def setup_param_file_group_dis... | [[0, 100], [5, 51]]) | assert_* | collection | tests/test_util.py | test_readfile | 63 | null | |
SALib/SALib | from SALib.analyze import delta
from SALib.util import handle_seed
import numpy as np
import pandas as pd
import pytest
def create_base_dataframe(seed=42):
rng = handle_seed(seed)
n = 15000
col_a = np.linspace(10, 80, n, endpoint=False) + rng.uniform(0, 70 / n, size=n)
col_b = np.linspace(-20, 50, n, ... | ValueError, match=r"Method must be") | pytest.raises | complex_expr | tests/test_analyze_delta.py | test_invalid_userspec_method | 238 | null | |
SALib/SALib | from pytest import fixture, mark
import numpy as np
from numpy.testing import assert_allclose
from SALib.analyze import delta, dgsm, fast, rbd_fast, sobol, morris, hdmr
from SALib.sample import (
fast_sampler,
finite_diff,
latin,
saltelli,
sobol as sobol_sampler,
)
from SALib.sample.morris import ... | [0.001]) | assert_* | collection | tests/test_regression.py | test_regression_sobol_groups_dists | 309 | null | |
SALib/SALib | from numpy.testing import assert_equal, assert_allclose
from pytest import raises, fixture, warns, mark
import numpy as np
import warnings
from SALib.sample.morris.morris import (
sample,
_check_group_membership,
_check_if_num_levels_is_even,
_compute_optimised_trajectories,
_generate_p_star,
... | ["Test 1", "Test 2", "Test 3"]) | assert_* | collection | tests/sample/morris/test_morris.py | test_group_in_param_file_read | 95 | null | |
SALib/SALib | from pytest import raises, mark
from numpy.testing import assert_equal, assert_allclose
import numpy as np
from scipy.stats import norm
from SALib.analyze import sobol
from SALib.sample import sobol_sequence, sobol as sobol_sampler
from SALib.test_functions import Ishigami, Sobol_G
from SALib.util import read_param_fi... | [0.31, 0.44, 0.00]) | assert_* | collection | tests/test_sobol.py | test_parallel_first_order | 115 | null | |
SALib/SALib | from pytest import fixture, mark
import numpy as np
from numpy.testing import assert_allclose
from SALib.analyze import delta, dgsm, fast, rbd_fast, sobol, morris, hdmr
from SALib.sample import (
fast_sampler,
finite_diff,
latin,
saltelli,
sobol as sobol_sampler,
)
from SALib.sample.morris import ... | [0.31, 0.44, 0.00]) | assert_* | collection | tests/test_regression.py | test_regression_sobol | 224 | null | |
SALib/SALib | from pytest import raises, mark
from numpy.testing import assert_equal, assert_allclose
import numpy as np
from scipy.stats import norm
from SALib.analyze import sobol
from SALib.sample.sobol import sample as sobol_sample
from SALib.sample import sobol_sequence
from SALib.test_functions import Ishigami, Sobol_G
from S... | [0.55, 0.44, 0.24]) | assert_* | collection | tests/test_sp_sobol.py | test_parallel_first_order | 117 | null | |
SALib/SALib | from pytest import raises
from numpy.testing import assert_equal, assert_allclose
import numpy as np
from scipy import stats
import pytest
from SALib.util import (
read_param_file,
_scale_samples,
_unscale_samples,
compute_groups_matrix,
)
from SALib.sample import latin
def setup_param_file_group_dis... | ["Group 1", "Group 2"]) | assert_* | collection | tests/test_util.py | test_compute_groups_from_parameter_file | 178 | null | |
SALib/SALib | from pytest import raises, fixture
import numpy as np
from numpy.testing import assert_allclose, assert_equal
from SALib.analyze.morris import (
analyze,
_compute_mu_star_confidence,
_compute_elementary_effects,
_reorganize_output_matrix,
_compute_grouped_metric,
_compute_grouped_sigma,
_c... | desired_sigma) | assert_* | variable | tests/test_analyze_morris.py | test_analysis_of_morris_results | 117 | null | |
SALib/SALib | from pytest import raises
from numpy.testing import assert_equal, assert_allclose
import numpy as np
from scipy import stats
import pytest
from SALib.util import (
read_param_file,
_scale_samples,
_unscale_samples,
compute_groups_matrix,
)
from SALib.sample import latin
def setup_param_file_group_dis... | ["Test1", "Test2", "Test3"]) | assert_* | collection | tests/test_util.py | test_readfile_group_dist | 76 | null | |
SALib/SALib | import pytest
import numpy as np
from SALib import ProblemSpec
def example_func(x):
"""Example linear test function."""
return np.sum(x, axis=1)
@pytest.mark.filterwarnings("ignore::DeprecationWarning")
def test_sobol_group_analysis():
"""Ensure valid groupings are returned from the Sobol analysis method... | 2 | assert | numeric_literal | tests/test_groups.py | test_sobol_group_analysis | 44 | null | |
SALib/SALib | import numpy as np
import pandas as pd
from SALib.sample import (
sobol as sobol_sample,
morris as morris_sample,
finite_diff,
fast_sampler,
ff as ff_sample,
latin,
)
from SALib.analyze import sobol, morris, dgsm, fast, ff, rbd_fast
from SALib.test_functions import Ishigami, Sobol_G
def test_mo... | expected_index | assert | variable | tests/test_to_df.py | test_morris_to_df | 46 | null | |
SALib/SALib | from numpy.testing import assert_equal, assert_allclose
from pytest import raises, fixture, warns, mark
import numpy as np
import warnings
from SALib.sample.morris.morris import (
sample,
_check_group_membership,
_check_if_num_levels_is_even,
_compute_optimised_trajectories,
_generate_p_star,
... | expected) | assert_* | variable | tests/sample/morris/test_morris.py | test_find_optimum_trajectories | 144 | null | |
SALib/SALib | from pytest import raises
from numpy.testing import assert_equal, assert_allclose
import numpy as np
from scipy import stats
import pytest
from SALib.util import (
read_param_file,
_scale_samples,
_unscale_samples,
compute_groups_matrix,
)
from SALib.sample import latin
def setup_param_file_group_dis... | desired) | assert_* | variable | tests/test_util.py | test_scale_samples | 134 | null | |
SALib/SALib | from pytest import fixture, mark
import numpy as np
from numpy.testing import assert_allclose
from SALib.analyze import delta, dgsm, fast, rbd_fast, sobol, morris, hdmr
from SALib.sample import (
fast_sampler,
finite_diff,
latin,
saltelli,
sobol as sobol_sampler,
)
from SALib.sample.morris import ... | [13.95285, 7.875]) | assert_* | collection | tests/test_regression.py | test_regression_morris_groups_local_optim | TestMorris | 173 | null |
SALib/SALib | from numpy.testing import assert_equal, assert_allclose
from pytest import raises, fixture, warns, mark
import numpy as np
import warnings
from SALib.sample.morris.morris import (
sample,
_check_group_membership,
_check_if_num_levels_is_even,
_compute_optimised_trajectories,
_generate_p_star,
... | str( err.value ) | assert | func_call | tests/sample/morris/test_morris.py | test_group_sample_fails_with_wrong_G_matrix | 168 | null | |
SALib/SALib | from pytest import raises, fixture
import numpy as np
from numpy.testing import assert_allclose, assert_equal
from SALib.analyze.morris import (
analyze,
_compute_mu_star_confidence,
_compute_elementary_effects,
_reorganize_output_matrix,
_compute_grouped_metric,
_compute_grouped_sigma,
_c... | desired_mu_star) | assert_* | variable | tests/test_analyze_morris.py | test_analysis_of_morris_results | 110 | null | |
SALib/SALib | from pytest import raises, mark
from numpy.testing import assert_equal, assert_allclose
import numpy as np
from scipy.stats import norm
from SALib.analyze import sobol
from SALib.sample.sobol import sample as sobol_sample
from SALib.sample import sobol_sequence
from SALib.test_functions import Ishigami, Sobol_G
from S... | expected) | assert_* | variable | tests/test_sp_sobol.py | test_sobol_sequence | 37 | null | |
SALib/SALib | from SALib.analyze import delta
from SALib.util import handle_seed
import numpy as np
import pandas as pd
import pytest
def create_base_dataframe(seed=42):
rng = handle_seed(seed)
n = 15000
col_a = np.linspace(10, 80, n, endpoint=False) + rng.uniform(0, 70 / n, size=n)
col_b = np.linspace(-20, 50, n, ... | RuntimeError, match=r"Confidence level") | pytest.raises | complex_expr | tests/test_analyze_delta.py | test_conf_level_too_low | 219 | null | |
SALib/SALib | from SALib.analyze import delta
from SALib.util import handle_seed
import numpy as np
import pandas as pd
import pytest
def create_base_dataframe(seed=42):
rng = handle_seed(seed)
n = 15000
col_a = np.linspace(10, 80, n, endpoint=False) + rng.uniform(0, 70 / n, size=n)
col_b = np.linspace(-20, 50, n, ... | RuntimeError, match=r"y_resamples must be") | pytest.raises | complex_expr | tests/test_analyze_delta.py | test_y_resamples_error | 250 | null | |
SALib/SALib | from pytest import fixture, mark
import numpy as np
from numpy.testing import assert_allclose
from SALib.analyze import delta, dgsm, fast, rbd_fast, sobol, morris, hdmr
from SALib.sample import (
fast_sampler,
finite_diff,
latin,
saltelli,
sobol as sobol_sampler,
)
from SALib.sample.morris import ... | [9.786986, 7.875]) | assert_* | collection | tests/test_regression.py | test_regression_morris_groups_brute_optim | TestMorris | 145 | null |
SALib/SALib | from SALib.sample.morris import SampleMorris, LocalOptimisation, BruteForce
from SALib.sample.morris.morris import _sample_morris
from SALib.util import read_param_file, handle_seed
import numpy as np
from numpy.testing import assert_equal, assert_allclose
import numpy.random as rd
import pytest
from pytest import f... | expected) | assert_* | variable | tests/sample/morris/test_morris_strategies.py | test_find_maximum | TestSharedMethods | 81 | null |
SALib/SALib | from numpy.testing import assert_equal, assert_allclose
from pytest import raises, fixture, warns, mark
import numpy as np
import warnings
from SALib.sample.morris.morris import (
sample,
_check_group_membership,
_check_if_num_levels_is_even,
_compute_optimised_trajectories,
_generate_p_star,
... | desired) | assert_* | variable | tests/sample/morris/test_morris.py | test_compute_delta | TestGroupSampleGeneration | 194 | null |
SALib/SALib | import numpy as np
from numpy.testing import assert_equal, assert_allclose
from SALib.sample.ff import sample, find_smallest, extend_bounds
from SALib.analyze.ff import analyze, interactions
def test_interactions():
""" """
problem = {
"bounds": [[0.0, 2.5], [0.0, 1.0], [0.0, 1.0], [0.0, 1.0]],
... | [0.3, 0, 0, 0, 0, 0.3]) | assert_* | collection | tests/test_ff.py | test_interactions | 405 | null | |
SALib/SALib | from SALib.sample.morris import SampleMorris, LocalOptimisation, BruteForce
from SALib.sample.morris.morris import _sample_morris
from SALib.util import read_param_file, handle_seed
import numpy as np
from numpy.testing import assert_equal, assert_allclose
import numpy.random as rd
import pytest
from pytest import f... | output_local) | assert_* | variable | tests/sample/morris/test_morris_strategies.py | test_find_local_maximum_distance | TestLocallyOptimalStrategy | 199 | null |
SALib/SALib | from SALib.analyze import delta
from SALib.util import handle_seed
import numpy as np
import pandas as pd
import pytest
def create_base_dataframe(seed=42):
rng = handle_seed(seed)
n = 15000
col_a = np.linspace(10, 80, n, endpoint=False) + rng.uniform(0, 70 / n, size=n)
col_b = np.linspace(-20, 50, n, ... | ValueError, match=r"Forbidden column name") | pytest.raises | complex_expr | tests/test_analyze_delta.py | test_invalid_columnnames_user | 269 | null | |
SALib/SALib | from SALib.sample.morris import SampleMorris, LocalOptimisation, BruteForce
from SALib.sample.morris.morris import _sample_morris
from SALib.util import read_param_file, handle_seed
import numpy as np
from numpy.testing import assert_equal, assert_allclose
import numpy.random as rd
import pytest
from pytest import f... | actual) | assert_* | variable | tests/sample/morris/test_morris_strategies.py | test_make_index_list | TestBruteForceMethods | 424 | null |
SALib/SALib | from pytest import raises
from numpy.testing import assert_equal, assert_allclose
import numpy as np
from scipy import stats
import pytest
from SALib.util import (
read_param_file,
_scale_samples,
_unscale_samples,
compute_groups_matrix,
)
from SALib.sample import latin
def setup_param_file_group_dis... | ["unif", "triang", "norm"]) | assert_* | collection | tests/test_util.py | test_readfile_group_dist | 78 | null | |
SALib/SALib | import numpy as np
from numpy.testing import assert_equal, assert_allclose
from SALib.sample.ff import sample, find_smallest, extend_bounds
from SALib.analyze.ff import analyze, interactions
def test_extend_bounds():
problem = {
"bounds": np.repeat([-1, 1], 12).reshape(2, 12).T,
"num_vars": 12,
... | expected) | assert_* | variable | tests/test_ff.py | test_extend_bounds | 69 | null | |
SALib/SALib | import numpy as np
from numpy.testing import assert_equal, assert_allclose
from SALib.sample.ff import sample, find_smallest, extend_bounds
from SALib.analyze.ff import analyze, interactions
def test_find_smallest():
""" """
num_vars = [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 15, 16, 17, 31, 32, 33]
expected = [0, ... | y) | assert_* | variable | tests/test_ff.py | test_find_smallest | 19 | null | |
SALib/SALib | import pytest
import numpy as np
from SALib.sample import fast_sampler, finite_diff, latin, saltelli
from SALib.sample.morris import sample as morris_sampler
def problem_setup():
N = 1
problem = {
"num_vars": 3,
"names": ["x1", "x2", "x3"],
"bounds": [[0, 1], [0, 1], [0, 1]],
}
... | True) | assert_* | bool_literal | tests/test_sample_seed.py | test_morris_sample_seed | 26 | null | |
SALib/SALib | import pytest
import copy
import numpy as np
import pandas as pd
from SALib import ProblemSpec
from SALib.test_functions import Ishigami
@pytest.mark.filterwarnings("ignore::UserWarning")
@pytest.mark.filterwarnings("ignore::DeprecationWarning")
def test_parallel_single_output():
# Create the SALib Problem speci... | psp.results) | assert_* | complex_expr | tests/test_problem_spec.py | test_parallel_single_output | 128 | null | |
JWock82/Pynite | import unittest
import numpy as np
from Pynite import FEModel3D
from Pynite.Material import Material
from Pynite.Section import Section, SteelSection
from Pynite.LoadCombo import LoadCombo
class TestSection(unittest.TestCase):
def setUp(self):
self.model = FEModel3D()
def test_section_creation(self):... | 9.13) | self.assertEqual | numeric_literal | Testing/test_material_section_coverage.py | test_section_creation | TestSection | 93 | null |
JWock82/Pynite | import sys
sys.path.insert(0, r'c:\Users\craig\Documents\Python\Pynite')
from Pynite import FEModel3D
def test_mesh_regeneration_with_shared_nodes():
"""Test that nodes shared with other elements are preserved during regeneration."""
print("\n=== Test 2: Shared Nodes Preservation ===")
# Create ... | model.quads | assert | complex_expr | Testing/test_mesh_regen_simple.py | test_mesh_regeneration_with_shared_nodes | 99 | null | |
JWock82/Pynite | import pytest
import numpy as np
from Pynite import FEModel3D
def analytical_cantilever_frequency(mode_num, L, E, I, rho, A, g):
"""
Calculates analytical natural frequencies for a cantilever beam.
Formula: f_n = (β_n² / (2π L²)) * sqrt(EI / (ρA))
where β_n are the roots of cos(β)cosh(β) + 1 = 0
"... | freq1[0] | assert | complex_expr | Testing/test_modal_analysis.py | test_mass_increase | 156 | null | |
JWock82/Pynite | import unittest
import numpy as np
from Pynite import FEModel3D
from Pynite.Material import Material
from Pynite.Section import Section, SteelSection
from Pynite.LoadCombo import LoadCombo
class TestSection(unittest.TestCase):
def setUp(self):
self.model = FEModel3D()
def test_section_creation(self):... | 37.1) | self.assertEqual | numeric_literal | Testing/test_material_section_coverage.py | test_section_creation | TestSection | 94 | null |
JWock82/Pynite | import unittest
from Pynite import FEModel3D
class TestNode3D(unittest.TestCase):
def setUp(self):
self.model = FEModel3D()
self.model.add_node('N1', 0, 0, 0)
self.node = self.model.nodes['N1']
def test_node_coordinates(self):
"""Test node with different coordinates."""
... | 30) | self.assertEqual | numeric_literal | Testing/test_node_spring_coverage.py | test_node_coordinates | TestNode3D | 30 | null |
JWock82/Pynite | import unittest
from Pynite import FEModel3D
import math
import sys
from io import StringIO
class Test_Support_Settlement(unittest.TestCase):
def setUp(self):
# Suppress printed output temporarily
sys.stdout = StringIO()
def tearDown(self):
# Reset the print function to normal
... | 0.076) | self.assertLess | numeric_literal | Testing/test_support_settlement.py | test_support_settlement | Test_Support_Settlement | 92 | null |
JWock82/Pynite | import unittest
import numpy as np
from Pynite import FEModel3D
from Pynite.Material import Material
from Pynite.Section import Section, SteelSection
from Pynite.LoadCombo import LoadCombo
class TestSteelSection(unittest.TestCase):
def setUp(self):
self.model = FEModel3D()
self.model.add_material(... | 30.4) | self.assertEqual | numeric_literal | Testing/test_material_section_coverage.py | test_steel_section_creation | TestSteelSection | 142 | null |
JWock82/Pynite | import unittest
from Pynite import FEModel3D
import sys
from io import StringIO
class Test_Spring_Supports(unittest.TestCase):
def setUp(self):
# Suppress printed output temporarily
sys.stdout = StringIO()
def tearDown(self):
# Reset the print function to normal
sys.stdout = s... | 'Failed beam on elastic foundation test.') | self.assertLess | string_literal | Testing/test_spring_support.py | test_beam_on_elastic_foundation | Test_Spring_Supports | 73 | null |
JWock82/Pynite | import unittest
from Pynite import FEModel3D
import math
import sys
from io import StringIO
class Test_2D_Frame(unittest.TestCase):
def setUp(self):
# Suppress printed output temporarily
sys.stdout = StringIO()
def tearDown(self):
# Reset the print function to normal
sys.stdou... | 3) | self.assertAlmostEqual | numeric_literal | Testing/test_TC_analysis.py | test_TC_members | Test_2D_Frame | 62 | null |
JWock82/Pynite | from __future__ import annotations
import pytest
from Pynite.FEModel3D import FEModel3D
def test_support_and_spring_support_merge():
model = FEModel3D()
# F will be canonical; G will be merged into F
model.add_node("F", 0.0, 0.0, 0.0)
model.add_node("G", 0.0, 0.0, 0.0002)
# Apply support/spring ... | 5000.0 | assert | numeric_literal | Testing/test_node_merge.py | test_support_and_spring_support_merge | 100 | null | |
JWock82/Pynite | import unittest
import numpy as np
from Pynite import FEModel3D
from Pynite.Material import Material
from Pynite.Section import Section, SteelSection
from Pynite.LoadCombo import LoadCombo
class TestLoadCombo(unittest.TestCase):
def test_overwrite_load_case(self):
"""Test overwriting an existing load case... | 1.5) | self.assertEqual | numeric_literal | Testing/test_material_section_coverage.py | test_overwrite_load_case | TestLoadCombo | 80 | null |
JWock82/Pynite | from Pynite import FEModel3D
import math
def test_plate_displacement():
"""
# A First Course in the Finite Element Method, 4th Edition
# Daryl L. Logan
# Example 12.1
# Units for this model are pounds and inches
"""
plate_model= FEModel3D()
plate_model.add_node('N1', 0, 0, 0)
plat... | 0.01 | assert | numeric_literal | Testing/test_plates&quads.py | test_plate_displacement | 66 | null | |
JWock82/Pynite | import unittest
import numpy as np
from Pynite import FEModel3D
from Pynite.Material import Material
from Pynite.Section import Section, SteelSection
from Pynite.LoadCombo import LoadCombo
class TestSteelSection(unittest.TestCase):
def setUp(self):
self.model = FEModel3D()
self.model.add_material(... | 1.0) | self.assertLess | numeric_literal | Testing/test_material_section_coverage.py | test_steel_section_phi_elastic | TestSteelSection | 162 | null |
JWock82/Pynite | from Pynite import FEModel3D
from Pynite.Rendering import Renderer
from math import isclose
def test_piers_and_coupling_beams():
# Create a new finite element model
model = FEModel3D()
# Define a material for our shear wall
fm = 2000/1000*144 # ksf
Em = 900*fm # ksf
Gm = 0.4*Em # ksf
n... | round(M3, 3) | assert | func_call | Testing/test_shear_wall.py | test_piers_and_coupling_beams | 135 | null | |
JWock82/Pynite | from Pynite import FEModel3D
import pytest as pt
def test_beam_rotation():
# Create a model
beam = FEModel3D()
# Add nodes to the model
beam.add_node('N1', 0, 0, 0)
beam.add_node('N2', 10, 0, 0)
# Define supports
beam.def_support('N1', True, True, True, True, False, False)
beam.def_s... | pt.approx(-17.677, rel=1e-2) | assert | func_call | Testing/test_member_rotation.py | test_beam_rotation | 40 | null | |
JWock82/Pynite | import os
import pytest
import vtk
from io import BytesIO
from IPython.display import Image
from Pynite import FEModel3D
from Pynite import Visualization as VTKVis
from Pynite.Visualization import Renderer as VTKRenderer
from Pynite.Rendering import Renderer as PVRenderer
import pyvista as pv
pv.OFF_SCREEN = True
def... | "D" | assert | string_literal | Testing/test_Visualization.py | test_case_combo_mutual_exclusion | 265 | null | |
JWock82/Pynite | import sys
sys.path.insert(0, r'c:\Users\craig\Documents\Python\Pynite')
from Pynite import FEModel3D
def test_delete_mesh_basic():
"""Test basic mesh deletion."""
print("\n=== Test 1: Basic Mesh Deletion ===")
# Create a model
model = FEModel3D()
model.add_material('Steel', 29000, 11200... | 0 | assert | numeric_literal | Testing/test_delete_mesh.py | test_delete_mesh_basic | 51 | null | |
JWock82/Pynite | from __future__ import annotations
import pytest
from Pynite.FEModel3D import FEModel3D
def test_simple_pair_merge_canonical_first_added():
model = FEModel3D()
# Add A first, then B very close to A (within tolerance)
model.add_node("A", 0.0, 0.0, 0.0)
model.add_node("B", 0.0, 0.0, 0.0005)
remove... | {"B"} | assert | collection | Testing/test_node_merge.py | test_simple_pair_merge_canonical_first_added | 42 | null | |
JWock82/Pynite | from Pynite import FEModel3D
from Pynite.Rendering import Renderer
from math import isclose
def test_cracked_rect_shear_wall():
sw = FEModel3D()
# Define a material
E = 57000*(4000)**0.5/1000*12**2
nu = 0.17
G = E/(2*(1 + nu))
sw.add_material('Concrete', E, G, nu, 0.150)
# Define geometr... | 0.02 | assert | numeric_literal | Testing/test_shear_wall.py | test_cracked_rect_shear_wall | 261 | null | |
JWock82/Pynite | from __future__ import annotations
import pytest
from Pynite.FEModel3D import FEModel3D
def test_no_merge_unique_nodes():
model = FEModel3D()
model.add_node("N1", 0.0, 0.0, 0.0)
model.add_node("N2", 1.0, 0.0, 0.0)
removed = model.merge_duplicate_nodes(tolerance=1e-6)
assert removed == | [] | assert | collection | Testing/test_node_merge.py | test_no_merge_unique_nodes | 28 | null | |
JWock82/Pynite | import unittest
from Pynite import FEModel3D
class TestNode3D(unittest.TestCase):
def setUp(self):
self.model = FEModel3D()
self.model.add_node('N1', 0, 0, 0)
self.node = self.model.nodes['N1']
def test_node_coordinates(self):
"""Test node with different coordinates."""
... | 10) | self.assertEqual | numeric_literal | Testing/test_node_spring_coverage.py | test_node_coordinates | TestNode3D | 28 | null |
JWock82/Pynite | from __future__ import annotations
import pytest
from Pynite.FEModel3D import FEModel3D
def test_simple_pair_merge_canonical_first_added():
model = FEModel3D()
# Add A first, then B very close to A (within tolerance)
model.add_node("A", 0.0, 0.0, 0.0)
model.add_node("B", 0.0, 0.0, 0.0005)
remove... | 1 | assert | numeric_literal | Testing/test_node_merge.py | test_simple_pair_merge_canonical_first_added | 43 | null | |
JWock82/Pynite | import pytest
import numpy as np
from Pynite import FEModel3D
def analytical_cantilever_frequency(mode_num, L, E, I, rho, A, g):
"""
Calculates analytical natural frequencies for a cantilever beam.
Formula: f_n = (β_n² / (2π L²)) * sqrt(EI / (ρA))
where β_n are the roots of cos(β)cosh(β) + 1 = 0
"... | ratio | assert | variable | Testing/test_modal_analysis.py | test_lumped_vs_consistent_mass | 215 | null | |
JWock82/Pynite | import sys
sys.path.insert(0, r'c:\Users\craig\Documents\Python\Pynite')
from Pynite import FEModel3D
def test_delete_mesh_basic():
"""Test basic mesh deletion."""
print("\n=== Test 1: Basic Mesh Deletion ===")
# Create a model
model = FEModel3D()
model.add_material('Steel', 29000, 11200... | model.meshes | assert | complex_expr | Testing/test_delete_mesh.py | test_delete_mesh_basic | 48 | null | |
JWock82/Pynite | import unittest
from Pynite import FEModel3D
class TestNode3D(unittest.TestCase):
def setUp(self):
self.model = FEModel3D()
self.model.add_node('N1', 0, 0, 0)
self.node = self.model.nodes['N1']
def test_node_distance_simple(self):
"""Test distance calculation between two nodes... | 5) | self.assertEqual | numeric_literal | Testing/test_node_spring_coverage.py | test_node_distance_simple | TestNode3D | 73 | null |
JWock82/Pynite | from Pynite import FEModel3D
from Pynite.Rendering import Renderer
from math import isclose
def test_PCA_7_rect():
"""
Tests against the example from Section 7 of "Circular Concrete Tanks without Prestressing" by PCA.
"""
# Create a new finite element model
tank_model = FEModel3D()
H = 20 ... | 0.08 | assert | numeric_literal | Testing/test_meshes.py | test_PCA_7_rect | 207 | null | |
JWock82/Pynite | from Pynite import FEModel3D
import pytest as pt
def test_beam_rotation():
# Create a model
beam = FEModel3D()
# Add nodes to the model
beam.add_node('N1', 0, 0, 0)
beam.add_node('N2', 10, 0, 0)
# Define supports
beam.def_support('N1', True, True, True, True, False, False)
beam.def_s... | pt.approx(0.0, rel=1e-2) | assert | func_call | Testing/test_member_rotation.py | test_beam_rotation | 39 | null | |
JWock82/Pynite | from Pynite import FEModel3D
from Pynite.Rendering import Renderer
from math import isclose
def test_rect_mesh_in_plane_stiffness():
model = FEModel3D()
E = 57*(5000)**0.5*12**2
G = 0.4*E
nu = 0.15
rho = 0.150
model.add_material('Concrete', E, G, nu, rho)
model.add_rectangle_mesh('MSH1',... | 1369 | assert | numeric_literal | Testing/test_meshes.py | test_rect_mesh_in_plane_stiffness | 47 | null | |
JWock82/Pynite | import sys
sys.path.insert(0, r'c:\Users\craig\Documents\Python\Pynite')
from Pynite import FEModel3D
def test_delete_mesh_with_attached_elements():
"""Test that attached elements are preserved during mesh deletion."""
print("\n=== Test 2: Mesh Deletion with Attached Elements ===")
# Create a mo... | 1 | assert | numeric_literal | Testing/test_delete_mesh.py | test_delete_mesh_with_attached_elements | 108 | null | |
JWock82/Pynite | import unittest
from Pynite import FEModel3D
class TestNode3D(unittest.TestCase):
def setUp(self):
self.model = FEModel3D()
self.model.add_node('N1', 0, 0, 0)
self.node = self.model.nodes['N1']
def test_node_coordinates(self):
"""Test node with different coordinates."""
... | 20) | self.assertEqual | numeric_literal | Testing/test_node_spring_coverage.py | test_node_coordinates | TestNode3D | 29 | null |
JWock82/Pynite | import pytest
import numpy as np
from Pynite import FEModel3D
def analytical_cantilever_frequency(mode_num, L, E, I, rho, A, g):
"""
Calculates analytical natural frequencies for a cantilever beam.
Formula: f_n = (β_n² / (2π L²)) * sqrt(EI / (ρA))
where β_n are the roots of cos(β)cosh(β) + 1 = 0
"... | num_modes | assert | variable | Testing/test_modal_analysis.py | test_different_mode_counts | 233 | null | |
JWock82/Pynite | import sys
sys.path.insert(0, r'c:\Users\craig\Documents\Python\Pynite')
from Pynite import FEModel3D
def test_rectangle_mesh_regeneration():
"""Test that regenerating a RectangleMesh removes old nodes/elements."""
print("\n=== Test 1: Rectangle Mesh Regeneration ===")
# Create a simple model
... | initial_elements | assert | variable | Testing/test_mesh_regen_simple.py | test_rectangle_mesh_regeneration | 51 | null | |
JWock82/Pynite | import unittest
import numpy as np
from Pynite import FEModel3D
from Pynite.Material import Material
from Pynite.Section import Section, SteelSection
from Pynite.LoadCombo import LoadCombo
class TestLoadCombo(unittest.TestCase):
def test_loadcombo_creation_empty(self):
"""Test creating an empty load combi... | 'D') | self.assertEqual | string_literal | Testing/test_material_section_coverage.py | test_loadcombo_creation_empty | TestLoadCombo | 46 | null |
JWock82/Pynite | import os
import pytest
import vtk
from io import BytesIO
from IPython.display import Image
from Pynite import FEModel3D
from Pynite import Visualization as VTKVis
from Pynite.Visualization import Renderer as VTKRenderer
from Pynite.Rendering import Renderer as PVRenderer
import pyvista as pv
pv.OFF_SCREEN = True
def... | stress | assert | variable | Testing/test_Visualization.py | test_toggle_visual_properties | 151 | null | |
JWock82/Pynite | from Pynite import FEModel3D
import numpy as np
def test_spring_elements():
# A First Course in the Finite Element Method, 4th Edition
# Daryl L. Logan
# Example 2.1
# Units for this model are pounds and inches
system = FEModel3D()
system.add_node('1', 0, 0, 0)
system.add_node('2', 30, 0,... | round(15/11, 4) | assert | func_call | Testing/test_springs.py | test_spring_elements | 48 | null | |
JWock82/Pynite | import unittest
from Pynite import FEModel3D
import math
import sys
from io import StringIO
class Test_2D_Frame(unittest.TestCase):
def setUp(self):
# Suppress printed output temporarily
sys.stdout = StringIO()
def tearDown(self):
# Reset the print function to normal
sys.stdou... | tc_model.members['t-only bott'].active['Combo 1']) | self.assertFalse | complex_expr | Testing/test_TC_analysis.py | test_TC_members | Test_2D_Frame | 65 | null |
JWock82/Pynite | from Pynite import FEModel3D
from Pynite.Rendering import Renderer
from math import isclose
def test_PCA_7_rect():
"""
Tests against the example from Section 7 of "Circular Concrete Tanks without Prestressing" by PCA.
"""
# Create a new finite element model
tank_model = FEModel3D()
H = 20 ... | 0.05 | assert | numeric_literal | Testing/test_meshes.py | test_PCA_7_rect | 210 | null | |
JWock82/Pynite | import os
import pytest
import vtk
from io import BytesIO
from IPython.display import Image
from Pynite import FEModel3D
from Pynite import Visualization as VTKVis
from Pynite.Visualization import Renderer as VTKRenderer
from Pynite.Rendering import Renderer as PVRenderer
import pyvista as pv
pv.OFF_SCREEN = True
def... | None | assert | none_literal | Testing/test_Visualization.py | test_case_combo_mutual_exclusion | 262 | null | |
JWock82/Pynite | import os
import pytest
import vtk
from io import BytesIO
from IPython.display import Image
from Pynite import FEModel3D
from Pynite import Visualization as VTKVis
from Pynite.Visualization import Renderer as VTKRenderer
from Pynite.Rendering import Renderer as PVRenderer
import pyvista as pv
pv.OFF_SCREEN = True
def... | 7 | assert | numeric_literal | Testing/test_Visualization.py | test_render_nodal_loads | 385 | null | |
JWock82/Pynite | from Pynite import FEModel3D
def test_spring_reactions():
model = FEModel3D()
model.add_node('N1', 0, 0, 0)
model.add_node_load('N1', 'FY', -5)
model.def_support('N1', True, False, True, True, True, True)
model.def_support_spring('N1', 'DY', '5', '-')
model.analyze()
assert model.nodes[... | 5 | assert | numeric_literal | Testing/test_reactions.py | test_spring_reactions | 16 | null | |
JWock82/Pynite | import pytest
import numpy as np
from Pynite import FEModel3D
def analytical_cantilever_frequency(mode_num, L, E, I, rho, A, g):
"""
Calculates analytical natural frequencies for a cantilever beam.
Formula: f_n = (β_n² / (2π L²)) * sqrt(EI / (ρA))
where β_n are the roots of cos(β)cosh(β) + 1 = 0
"... | 0 | assert | numeric_literal | Testing/test_modal_analysis.py | test_lumped_vs_consistent_mass | 208 | null | |
JWock82/Pynite | import enum
import unittest
from Pynite import FEModel3D
import math
import sys
from io import StringIO
class Test_AISC_Benchmark(unittest.TestCase):
def setUp(self):
# Suppress printed output temporarily
# sys.stdout = StringIO()
pass
def tearDown(self):
# Reset the... | 1) | self.assertAlmostEqual | numeric_literal | Testing/test_AISC_PDelta_benchmarks.py | test_AISC_benchmark_old | Test_AISC_Benchmark | 93 | null |
JWock82/Pynite | import unittest
from Pynite import FEModel3D
import math
import sys
from io import StringIO
class Test_2D_Frame(unittest.TestCase):
def setUp(self):
# Suppress printed output temporarily
sys.stdout = StringIO()
def tearDown(self):
# Reset the print function to normal
sys.stdou... | 3) | self.assertNotAlmostEqual | numeric_literal | Testing/test_reanalysis.py | test_reanalysis | Test_2D_Frame | 72 | null |
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