repo_id stringclasses 409
values | prefix large_stringlengths 34 36.3k | target large_stringlengths 1 498 | assertion_type stringclasses 31
values | difficulty stringclasses 8
values | test_file stringlengths 10 121 | test_function stringlengths 1 104 | test_class stringlengths 0 51 | lineno int32 2 11.3k | commit_idx int32 |
|---|---|---|---|---|---|---|---|---|---|
reata/sqllineage | from sqllineage.utils.entities import ColumnQualifierTuple
from ...helpers import assert_column_lineage_equal
def test_column_reference_from_previous_defined_cte():
sql = """WITH
cte1 AS (SELECT a FROM tab1),
cte2 AS (SELECT a FROM cte1)
INSERT INTO tab2
SELECT a FROM cte2"""
asse | [(ColumnQualifierTuple("a", "tab1"), ColumnQualifierTuple("a", "tab2"))]) | assert_* | collection | tests/sql/column/test_column_select_from_cte.py | test_column_reference_from_previous_defined_cte | 32 | null | |
reata/sqllineage | import pytest
from sqlparse.sql import Parenthesis
from sqllineage.core.models import Column, Path, Schema, SubQuery, Table
from sqllineage.exceptions import SQLLineageException
def test_of_dummy():
with pytest.raises( | NotImplementedError) | pytest.raises | variable | tests/core/test_models.py | test_of_dummy | 29 | null | |
reata/sqllineage | from sqllineage.utils.entities import ColumnQualifierTuple
from ...helpers import assert_column_lineage_equal
def test_smarter_column_resolution_using_query_context():
sql = """WITH
cte1 AS (SELECT a, b FROM tab1),
cte2 AS (SELECT c, d FROM tab2)
INSERT INTO tab3
SELECT b, d FROM cte1 JOIN cte2
WHERE cte1.a = cte... | [ (ColumnQualifierTuple("b", "tab1"), ColumnQualifierTuple("b", "tab3")), (ColumnQualifierTuple("d", "tab2"), ColumnQualifierTuple("d", "tab3")), ]) | assert_* | collection | tests/sql/column/test_column_select_from_cte.py | test_smarter_column_resolution_using_query_context | 84 | null | |
reata/sqllineage | from sqllineage.utils.entities import ColumnQualifierTuple
from ...helpers import assert_column_lineage_equal
def test_union_with_subquery():
sql = """INSERT INTO tab3
SELECT sq1.id
FROM (SELECT id
FROM tab1) sq1
UNION ALL
SELECT sq2.id
FROM (SELECT id
FROM tab2) sq2"""
asse | [ ( ColumnQualifierTuple("id", "tab1"), ColumnQualifierTuple("id", "tab3"), ), ( ColumnQualifierTuple("id", "tab2"), ColumnQualifierTuple("id", "tab3"), ), ]) | assert_* | collection | tests/sql/column/test_column_select_union.py | test_union_with_subquery | 74 | null | |
reata/sqllineage | from sqllineage.utils.entities import ColumnQualifierTuple
from ...helpers import assert_column_lineage_equal, assert_table_lineage_equal
def test_view_with_subquery_custom_columns():
# select as subquery
sql = "CREATE VIEW my_view (random1,random2) AS (SELECT col1,col2 FROM tbl)"
asse | [ ( ColumnQualifierTuple("col1", "tbl"), ColumnQualifierTuple("random1", "my_view"), ), ( ColumnQualifierTuple("col2", "tbl"), ColumnQualifierTuple("random2", "my_view"), ), ]) | assert_* | collection | tests/sql/column/test_column_select_column_specified_in_dml.py | test_view_with_subquery_custom_columns | 14 | null | |
reata/sqllineage | from sqllineage.utils.entities import ColumnQualifierTuple
from ...helpers import assert_column_lineage_equal
def test_select_column_using_window_function_with_parameters():
sql = """INSERT INTO tab1
SELECT col0,
max(col3) over (partition BY col1 ORDER BY col2 DESC) AS rnum,
col4
FROM tab2"""
a... | [ ( ColumnQualifierTuple("col0", "tab2"), ColumnQualifierTuple("col0", "tab1"), ), ( ColumnQualifierTuple("col1", "tab2"), ColumnQualifierTuple("rnum", "tab1"), ), ( ColumnQualifierTuple("col2", "tab2"), ColumnQualifierTuple("rnum", "tab1"), ), ( ColumnQualifierTuple("col3", "tab2"), ColumnQualifierTuple("rnum", "tab1"... | assert_* | collection | tests/sql/column/test_column_select_function.py | test_select_column_using_window_function_with_parameters | 84 | null | |
reata/sqllineage | import pytest
from ...helpers import assert_table_lineage_equal
@pytest.mark.parametrize("dialect", ["databricks", "sparksql"])
def test_create_temporary_function(dialect: str):
asse | """CREATE TEMPORARY FUNCTION simple_temp_udf AS 'SimpleUdf' USING JAR '/tmp/SimpleUdf.jar'""") | assert_* | string_literal | tests/sql/table/test_other_without_lineage_dialect_specific.py | test_create_temporary_function | 73 | null | |
reata/sqllineage | import pytest
from sqllineage.config import SQLLineageConfig
from sqllineage.core.graph import get_graph_operator_class
from sqllineage.core.graph.networkx import NetworkXGraphOperator
from sqllineage.core.graph.rustworkx import RustworkXGraphOperator
def test_graph_operator_import():
assert get_graph_operator_cl... | RustworkXGraphOperator | assert | variable | tests/core/test_graph_operator.py | test_graph_operator_import | 21 | null | |
reata/sqllineage | from ....helpers import assert_table_lineage_equal
def test_drop_after_create():
asse | None) | assert_* | none_literal | tests/sql/table/multiple_statements/test_tmp_table.py | test_drop_after_create | 34 | null | |
reata/sqllineage | import os
import tempfile
from sqllineage.cli import main
from sqllineage.config import SQLLineageConfig
from sqllineage.core.models import SubQuery
from sqllineage.runner import LineageRunner
from sqllineage.utils.constant import LineageLevel
from ..helpers import _gen_graph_operators, assert_table_lineage_equal
de... | None | assert | none_literal | tests/core/test_runner.py | test_runner_dummy | 22 | null | |
reata/sqllineage | from ...helpers import assert_table_lineage_equal
def test_with_select_one():
asse | {"schema1.tab1"}) | assert_* | collection | tests/sql/table/test_cte.py | test_with_select_one | 9 | null | |
reata/sqllineage | import os
from pathlib import Path
from unittest.mock import patch
import pytest
from sqllineage.cli import main
from sqllineage.config import SQLLineageConfig
@patch("builtins.open", side_effect=PermissionError())
def test_file_permission_error(_):
with pytest.raises( | SystemExit) | pytest.raises | variable | tests/core/test_cli.py | test_file_permission_error | 46 | null | |
reata/sqllineage | import pytest
from ...helpers import assert_table_lineage_equal
@pytest.mark.parametrize("dialect", ["databricks", "hive", "sparksql"])
def test_set_command(dialect: str):
asse | "SET spark.sql.variable.substitute=false") | assert_* | string_literal | tests/sql/table/test_other_without_lineage_dialect_specific.py | test_set_command | 106 | null | |
reata/sqllineage | import pytest
from ...helpers import assert_table_lineage_equal
@pytest.mark.parametrize("dialect", ["databricks", "sparksql"])
def test_with_select_one_without_as(dialect: str):
# AS in CTE is negligible in SparkSQL, however it is required in most other dialects
# https://spark.apache.org/docs/latest/sql-ref... | {"schema1.tab1"}) | assert_* | collection | tests/sql/table/test_cte_dialect_specific.py | test_with_select_one_without_as | 45 | null | |
reata/sqllineage | from sqllineage.utils.helpers import split
def test_split_statements_with_comment():
sql = """SELECT 1;
-- SELECT 2;"""
assert len(split(sql)) == | 1 | assert | numeric_literal | tests/sql/table/multiple_statements/test_split.py | test_split_statements_with_comment | 18 | null | |
reata/sqllineage | from sqllineage.utils.entities import ColumnQualifierTuple
from ...helpers import assert_column_lineage_equal
def test_insert_overwrite_from_self_with_join():
asse | [ ( ColumnQualifierTuple("price", "tab1"), ColumnQualifierTuple("price", "tab1"), ), ( ColumnQualifierTuple("price", "tab2"), ColumnQualifierTuple("price", "tab1"), ), ]) | assert_* | collection | tests/sql/column/test_column_select_from_join.py | test_insert_overwrite_from_self_with_join | 180 | null | |
reata/sqllineage | import pytest
from sqllineage.core.metadata_provider import MetaDataProvider
from sqllineage.utils.entities import ColumnQualifierTuple
from ...helpers import assert_column_lineage_equal, generate_metadata_providers
providers = generate_metadata_providers(
{
"db.tbl_x": ["id", "a", "b"],
"db.tbl_... | [ ( ColumnQualifierTuple("a", "db.tbl_x"), ColumnQualifierTuple("a", "<default>.test_v"), ), ( ColumnQualifierTuple("id", "db.tbl_x"), ColumnQualifierTuple("id", "<default>.test_v"), ), ( ColumnQualifierTuple("h", "db.tbl_y"), ColumnQualifierTuple("h", "<default>.test_v"), ), ]) | assert_* | collection | tests/sql/column/test_metadata_wildcard.py | test_select_table_join_partial_wildcard_at_beginning | 158 | null | |
reata/sqllineage | from sqllineage.utils.entities import ColumnQualifierTuple
from ...helpers import assert_column_lineage_equal
def test_select_column_without_table_qualifier_from_table_join():
sql = """INSERT INTO tab3
SELECT f1
FROM ( SELECT f1 FROM tab1)
LEFT JOIN ( SELECT f1 FROM tab2) USING (f1)"""
asse | [ ( ColumnQualifierTuple("f1", "tab1"), ColumnQualifierTuple("f1", "tab3"), ), ( ColumnQualifierTuple("f1", "tab2"), ColumnQualifierTuple("f1", "tab3"), ), ]) | assert_* | collection | tests/sql/column/test_column_select_from_join.py | test_select_column_without_table_qualifier_from_table_join | 71 | null | |
reata/sqllineage | import os
from unittest.mock import patch
import pytest
from sqllineage import SQLPARSE_DIALECT
from sqllineage.exceptions import (
InvalidSyntaxException,
SQLLineageException,
UnsupportedStatementException,
)
from sqllineage.runner import LineageRunner
def test_unsupported_query_type_in_sqlfluff():
... | UnsupportedStatementException) | pytest.raises | variable | tests/core/test_exception.py | test_unsupported_query_type_in_sqlfluff | 42 | null | |
reata/sqllineage | import concurrent.futures
import os
import random
import time
from unittest.mock import patch
import pytest
from sqllineage.config import SQLLineageConfig
from sqllineage.exceptions import ConfigException
from sqllineage.runner import LineageRunner
def test_update_config_using_context_manager():
with SQLLineageC... | False | assert | bool_literal | tests/core/test_config.py | test_update_config_using_context_manager | 41 | null | |
reata/sqllineage | import pytest
from ...helpers import assert_table_lineage_equal
@pytest.mark.parametrize("dialect", ["databricks", "sparksql"])
def test_cache_table(dialect: str):
assert_table_lineage_equal( | "cache table tab1 select * from tab2") | assert_* | string_literal | tests/sql/table/test_other_without_lineage_dialect_specific.py | test_cache_table | 30 | null | |
reata/sqllineage | import os
from unittest.mock import patch
import pytest
from sqllineage.core.metadata_provider import MetaDataProvider
from sqllineage.utils.entities import ColumnQualifierTuple
from ...helpers import assert_column_lineage_equal, generate_metadata_providers
providers = generate_metadata_providers(
{
"pu... | [ ( ColumnQualifierTuple("id", "public.src_tbl1"), ColumnQualifierTuple("name", "public.tgt_tbl1"), ), ( ColumnQualifierTuple("a", "public.src_tbl1"), ColumnQualifierTuple("name", "public.tgt_tbl1"), ), ( ColumnQualifierTuple("b", "public.src_tbl1"), ColumnQualifierTuple("name", "public.tgt_tbl1"), ), ]) | assert_* | collection | tests/sql/column/test_column_select_lateral_alias_ref.py | test_column_enable_lateral_ref_within_subquery | 269 | null | |
reata/sqllineage | from sqllineage.utils.entities import ColumnQualifierTuple
from ...helpers import assert_column_lineage_equal
def test_select_column_using_function():
sql = """INSERT INTO tab1
SELECT max(col1),
count(*)
FROM tab2"""
assert_column_lineage_equal(
sql,
[
(
Colu... | [ ( ColumnQualifierTuple("col1", "tab2"), ColumnQualifierTuple("col2", "tab1"), ), (ColumnQualifierTuple("*", "tab2"), ColumnQualifierTuple("cnt", "tab1")), ]) | assert_* | collection | tests/sql/column/test_column_select_function.py | test_select_column_using_function | 28 | null | |
reata/sqllineage | from sqllineage.utils.entities import ColumnQualifierTuple
from ...helpers import assert_column_lineage_equal
def test_nested_cte_with_partial_wildcard_expansion():
sql = """WITH t2 AS (SELECT *
FROM tab1),
t3 AS (SELECT f1,
*
FROM t2)
INSERT INTO tab3
SELECT *
FROM... | [ (ColumnQualifierTuple("*", "tab1"), ColumnQualifierTuple("*", "tab3")), ]) | assert_* | collection | tests/sql/column/test_column_select_from_cte.py | test_nested_cte_with_partial_wildcard_expansion | 116 | null | |
reata/sqllineage | import os
from pathlib import Path
from unittest.mock import patch
import pytest
from sqllineage.cli import main
from sqllineage.config import SQLLineageConfig
@patch("builtins.open", side_effect=PermissionError())
def test_file_permission_error(_):
with pytest.raises(SystemExit) as e:
main(["-f", __file... | 1 | assert | numeric_literal | tests/core/test_cli.py | test_file_permission_error | 48 | null | |
reata/sqllineage | from sqllineage.utils.entities import ColumnQualifierTuple
from ...helpers import assert_column_lineage_equal
def test_select_column_using_function():
sql = """INSERT INTO tab1
SELECT max(col1),
count(*)
FROM tab2"""
asse | [ ( ColumnQualifierTuple("col1", "tab2"), ColumnQualifierTuple("max(col1)", "tab1"), ), ( ColumnQualifierTuple("*", "tab2"), ColumnQualifierTuple("count(*)", "tab1"), ), ]) | assert_* | collection | tests/sql/column/test_column_select_function.py | test_select_column_using_function | 11 | null | |
reata/sqllineage | import concurrent.futures
import os
import random
import time
from unittest.mock import patch
import pytest
from sqllineage.config import SQLLineageConfig
from sqllineage.exceptions import ConfigException
from sqllineage.runner import LineageRunner
@patch.dict(
os.environ,
{
"SQLLINEAGE_DIRECTORY": o... | str | assert | variable | tests/core/test_config.py | test_config | 23 | null | |
reata/sqllineage | import concurrent.futures
import os
import random
import time
from unittest.mock import patch
import pytest
from sqllineage.config import SQLLineageConfig
from sqllineage.exceptions import ConfigException
from sqllineage.runner import LineageRunner
@patch.dict(
os.environ,
{
"SQLLINEAGE_DIRECTORY": o... | "<default>" | assert | string_literal | tests/core/test_config.py | test_config | 27 | null | |
reata/sqllineage | from sqllineage.utils.entities import ColumnQualifierTuple
from ...helpers import assert_column_lineage_equal, assert_table_lineage_equal
def test_insert_with_custom_columns():
# test with query as subquery
sql = "INSERT INTO tgt_tbl(random1, random2) (SELECT col1,col2 FROM src_tbl)"
asse | [ ( ColumnQualifierTuple("col1", "src_tbl"), ColumnQualifierTuple("random1", "tgt_tbl"), ), ( ColumnQualifierTuple("col2", "src_tbl"), ColumnQualifierTuple("random2", "tgt_tbl"), ), ]) | assert_* | collection | tests/sql/column/test_column_select_column_specified_in_dml.py | test_insert_with_custom_columns | 133 | null | |
reata/sqllineage | import pytest
from sqllineage.utils.entities import ColumnQualifierTuple
from ...helpers import assert_column_lineage_equal
@pytest.mark.parametrize("dialect", ["tsql"])
def test_tsql_assignment_operator(dialect: str):
"""
Assignment Operator is a Transact-SQL specific feature, used interchangeably with colu... | [ ( ColumnQualifierTuple("ProductID", "Production.Product"), ColumnQualifierTuple("SecondColumnHeading", "foo"), ) ]) | assert_* | collection | tests/sql/column/test_column_select_column_dialect_specific.py | test_tsql_assignment_operator | 18 | null | |
reata/sqllineage | from ...helpers import assert_table_lineage_equal
def test_cte_update_from():
asse | {"tab2"}) | assert_* | collection | tests/sql/table/test_cte.py | test_cte_update_from | 68 | null | |
reata/sqllineage | from sqllineage.utils.entities import ColumnQualifierTuple
from ...helpers import assert_column_lineage_equal
def test_select_columns():
sql = """INSERT INTO tab1
SELECT col1,
col2
FROM tab2"""
assert_column_lineage_equal(
sql,
[
(
ColumnQualifierTuple("col1", "tab2... | [ ( ColumnQualifierTuple("col1", "tab2"), ColumnQualifierTuple("max(col1)", "tab1"), ), ( ColumnQualifierTuple("col2", "tab2"), ColumnQualifierTuple("max(col2)", "tab1"), ), ]) | assert_* | collection | tests/sql/column/test_column_select_column.py | test_select_columns | 146 | null | |
reata/sqllineage | import pytest
from ...helpers import assert_table_lineage_equal
@pytest.mark.parametrize("dialect", ["mysql"])
def test_rename_tables(dialect: str):
asse | "rename table tab1 to tab2, tab3 to tab4") | assert_* | string_literal | tests/sql/table/test_other_without_lineage_dialect_specific.py | test_rename_tables | 18 | null | |
reata/sqllineage | import pytest
from ...helpers import assert_table_lineage_equal
@pytest.mark.parametrize("dialect", ["databricks", "sparksql"])
def test_uncache_table_if_exists(dialect: str):
assert_table_lineage_equal( | "uncache table if exists tab1") | assert_* | string_literal | tests/sql/table/test_other_without_lineage_dialect_specific.py | test_uncache_table_if_exists | 40 | null | |
reata/sqllineage | from ...helpers import assert_table_lineage_equal
def test_select():
assert_table_lineage_equal("SELECT col1 FROM tab1", | {"tab1"}) | assert_* | collection | tests/sql/table/test_select.py | test_select | 5 | null | |
reata/sqllineage | import pytest
from sqllineage.config import SQLLineageConfig
from sqllineage.core.graph import get_graph_operator_class
from sqllineage.core.graph.networkx import NetworkXGraphOperator
from sqllineage.core.graph.rustworkx import RustworkXGraphOperator
def test_graph_operator_dummy():
with pytest.raises( | TypeError) | pytest.raises | variable | tests/core/test_graph_operator.py | test_graph_operator_dummy | 10 | null | |
reata/sqllineage | from sqllineage.utils.entities import ColumnQualifierTuple
from ...helpers import assert_column_lineage_equal
def test_select_column_using_function_with_complex_parameter():
sql = """INSERT INTO tab1
SELECT if(col1 = 'foo' AND col2 = 'bar', 1, 0) AS flag
FROM tab2"""
asse | [ ( ColumnQualifierTuple("col1", "tab2"), ColumnQualifierTuple("flag", "tab1"), ), ( ColumnQualifierTuple("col2", "tab2"), ColumnQualifierTuple("flag", "tab1"), ), ]) | assert_* | collection | tests/sql/column/test_column_select_function.py | test_select_column_using_function_with_complex_parameter | 44 | null | |
reata/sqllineage | import os
import tempfile
from sqllineage.cli import main
from sqllineage.config import SQLLineageConfig
from sqllineage.core.models import SubQuery
from sqllineage.runner import LineageRunner
from sqllineage.utils.constant import LineageLevel
from ..helpers import _gen_graph_operators, assert_table_lineage_equal
de... | sql | assert | variable | tests/core/test_runner.py | test_statements_trim_comment | 29 | null | |
reata/sqllineage | from sqllineage.utils.entities import ColumnQualifierTuple
from ...helpers import assert_column_lineage_equal
def test_column_update_with_multi_tables():
sql = """
update
public.tgt_tbl1 as t
set
name = s1.name,
email = s2.email
from
public.src_tbl1 as s1
join
... | [ ( ColumnQualifierTuple("name", "public.src_tbl1"), ColumnQualifierTuple("name", "public.tgt_tbl1"), ), ( ColumnQualifierTuple("email", "public.src_tbl2"), ColumnQualifierTuple("email", "public.tgt_tbl1"), ), ]) | assert_* | collection | tests/sql/column/test_column_update.py | test_column_update_with_multi_tables | 82 | null | |
reata/sqllineage | import pytest
from sqllineage.core.models import Path
from ...helpers import assert_table_lineage_equal
@pytest.mark.parametrize("dialect", ["databricks", "hive", "sparksql"])
def test_insert_overwrite_directory(dialect: str):
"""
check following link for syntax reference:
https://spark.apache.org/do... | {Path("hdfs://path/to/folder")}) | assert_* | collection | tests/sql/table/test_path_dialect_specific.py | test_insert_overwrite_directory | 63 | null | |
reata/sqllineage | import os
from unittest.mock import patch
import pytest
from sqllineage.core.metadata_provider import MetaDataProvider
from sqllineage.utils.entities import ColumnQualifierTuple
from ...helpers import assert_column_lineage_equal, generate_metadata_providers
providers = generate_metadata_providers(
{
"pu... | [ ( ColumnQualifierTuple("name", "public.src_tbl1"), ColumnQualifierTuple("name", "public.tgt_tbl1"), ), ( ColumnQualifierTuple("name", "public.src_tbl1"), ColumnQualifierTuple("email", "public.tgt_tbl1"), ), ( ColumnQualifierTuple("email", "public.src_tbl1"), ColumnQualifierTuple("email", "public.tgt_tbl1"), ), ]) | assert_* | collection | tests/sql/column/test_column_select_lateral_alias_ref.py | test_column_top_level_enable_lateral_ref | 62 | null | |
reata/sqllineage | from sqllineage.utils.helpers import split
def test_split_statements():
sql = "SELECT * FROM tab1; SELECT * FROM tab2;"
assert len(split(sql)) == | 2 | assert | numeric_literal | tests/sql/table/multiple_statements/test_split.py | test_split_statements | 6 | null | |
reata/sqllineage | from ...helpers import assert_table_lineage_equal
def test_merge_into_using_table():
sql = """MERGE INTO target
USING src ON target.k = src.k
WHEN MATCHED THEN UPDATE SET target.v = src.v"""
assert_table_lineage_equal(sql, {"src"}, | {"target"}) | assert_* | collection | tests/sql/table/test_merge.py | test_merge_into_using_table | 8 | null | |
reata/sqllineage | from ...helpers import assert_table_lineage_equal
def test_create():
asse | {"tab1"}) | assert_* | collection | tests/sql/table/test_create.py | test_create | 5 | null | |
reata/sqllineage | import os
from unittest.mock import patch
import pytest
from sqllineage.core.metadata_provider import MetaDataProvider
from sqllineage.utils.entities import ColumnQualifierTuple
from ...helpers import assert_column_lineage_equal, generate_metadata_providers
providers = generate_metadata_providers(
{
"pu... | [ ( ColumnQualifierTuple("name", "public.src_tbl1"), ColumnQualifierTuple("user_name", "public.tgt_tbl1"), ), ( ColumnQualifierTuple("name", "public.src_tbl1"), ColumnQualifierTuple("id", "public.tgt_tbl1"), ), ( ColumnQualifierTuple("email", "public.src_tbl1"), ColumnQualifierTuple("id", "public.tgt_tbl1"), ), ]) | assert_* | collection | tests/sql/column/test_column_select_lateral_alias_ref.py | test_column_top_level_enable_lateral_ref | 31 | null | |
reata/sqllineage | import pytest
from ...helpers import assert_table_lineage_equal
@pytest.mark.parametrize("dialect", ["databricks", "hive", "sparksql"])
def test_select_left_semi_join(dialect: str):
assert_table_lineage_equal( | {"tab1", "tab2"}) | assert_* | collection | tests/sql/table/test_select_dialect_specific.py | test_select_left_semi_join | 40 | null | |
reata/sqllineage | import pytest
from sqllineage.utils.entities import ColumnQualifierTuple
from ...helpers import assert_column_lineage_equal
def test_cast_using_constant():
sql = """INSERT INTO tab1
SELECT cast('2012-12-21' AS date) AS col2"""
assert_column_lineage_equal( | sql) | assert_* | variable | tests/sql/column/test_column_select_cast.py | test_cast_using_constant | 115 | null | |
reata/sqllineage | from sqllineage.utils.entities import ColumnQualifierTuple
from ...helpers import assert_column_lineage_equal
def test_select_column_in_subquery():
sql = """INSERT INTO tab1
SELECT col1
FROM (SELECT col1 FROM tab2) dt"""
asse | [(ColumnQualifierTuple("col1", "tab2"), ColumnQualifierTuple("col1", "tab1"))]) | assert_* | collection | tests/sql/column/test_column_select_from_subquery.py | test_select_column_in_subquery | 10 | null | |
reata/sqllineage | from sqllineage.utils.entities import ColumnQualifierTuple
from ...helpers import assert_column_lineage_equal
def test_current_timestamp():
"""
current_timestamp is a keyword since ANSI SQL-2016
sqlparse cannot produce the correct AST for this case
"""
sql = """INSERT INTO tab1
SELECT current_time... | [ ( ColumnQualifierTuple("col2", "tab2"), ColumnQualifierTuple("col2", "tab1"), ), ( ColumnQualifierTuple("col3", "tab2"), ColumnQualifierTuple("col3", "tab1"), ), ]) | assert_* | collection | tests/sql/column/test_column_select_column.py | test_current_timestamp | 245 | null | |
reata/sqllineage | from sqllineage.utils.entities import ColumnQualifierTuple
from ...helpers import assert_column_lineage_equal
def test_select_column_from_table_join():
sql = """INSERT INTO tab1
SELECT tab2.col1,
tab3.col2
FROM tab2
INNER JOIN tab3
ON tab2.id = tab3.id"""
asse | [ ( ColumnQualifierTuple("col1", "tab2"), ColumnQualifierTuple("col1", "tab1"), ), ( ColumnQualifierTuple("col2", "tab3"), ColumnQualifierTuple("col2", "tab1"), ), ]) | assert_* | collection | tests/sql/column/test_column_select_from_join.py | test_select_column_from_table_join | 13 | null | |
reata/sqllineage | import os
from unittest.mock import patch
import pytest
from sqllineage.core.metadata_provider import MetaDataProvider
from sqllineage.utils.entities import ColumnQualifierTuple
from ...helpers import assert_column_lineage_equal, generate_metadata_providers
providers = generate_metadata_providers(
{
"pu... | [ ( ColumnQualifierTuple("id", "public.src_tbl1"), ColumnQualifierTuple("id", "public.tgt_tbl1"), ), ( ColumnQualifierTuple("id", "public.src_tbl1"), ColumnQualifierTuple("id_original", "public.tgt_tbl1"), ), ]) | assert_* | collection | tests/sql/column/test_column_select_lateral_alias_ref.py | test_column_top_level_enable_lateral_ref | 93 | null | |
reata/sqllineage | from sqllineage.utils.entities import ColumnQualifierTuple
from ...helpers import assert_column_lineage_equal
def test_column_lineage_with_table_alias_in_nested_parentheses():
sql = """INSERT INTO tab3
SELECT t2.col1
FROM (
(tab2 AS t2
JOIN tab1 AS t1
ON t2.id = t1.t2_id)
)"""... | [ ( ColumnQualifierTuple("col1", "tab2"), ColumnQualifierTuple("col1", "tab3"), ), ]) | assert_* | collection | tests/sql/column/test_column_select_from_join.py | test_column_lineage_with_table_alias_in_nested_parentheses | 168 | null | |
reata/sqllineage | import pytest
from sqlparse.sql import Parenthesis
from sqllineage.core.models import Column, Path, Schema, SubQuery, Table
from sqllineage.exceptions import SQLLineageException
def test_hash_eq():
assert Schema("a") == Schema("a")
assert len({Schema("a"), Schema("a")}) == 1
assert Table("a") == | Table("a") | assert | func_call | tests/core/test_models.py | test_hash_eq | 24 | null | |
reata/sqllineage | import pytest
from ...helpers import assert_table_lineage_equal
@pytest.mark.parametrize("dialect", ["databricks", "sparksql"])
def test_drop_function(dialect: str):
assert_table_lineage_equal( | "DROP FUNCTION test_avg") | assert_* | string_literal | tests/sql/table/test_other_without_lineage_dialect_specific.py | test_drop_function | 101 | null | |
reata/sqllineage | from sqllineage.utils.entities import ColumnQualifierTuple
from ...helpers import assert_column_lineage_equal
def test_merge_into_update_multiple_columns():
sql = """MERGE INTO target
USING src ON target.k = src.k
WHEN MATCHED THEN UPDATE SET target.v = src.v, target.v1 = src.v1"""
asse | [ (ColumnQualifierTuple("v", "src"), ColumnQualifierTuple("v", "target")), (ColumnQualifierTuple("v1", "src"), ColumnQualifierTuple("v1", "target")), ]) | assert_* | collection | tests/sql/column/test_column_merge.py | test_merge_into_update_multiple_columns | 20 | null | |
reata/sqllineage | import pytest
from sqllineage.core.models import Path
from ...helpers import assert_table_lineage_equal
@pytest.mark.parametrize("dialect", ["postgres", "redshift"])
def test_copy_from_path(dialect: str):
"""
https://www.postgresql.org/docs/current/sql-copy.html (Postgres)
https://docs.aws.amazon.com/es_... | {"tab1"}) | assert_* | collection | tests/sql/table/test_path_dialect_specific.py | test_copy_from_path | 14 | null | |
MolecularAI/aizynthfinder | import numpy as np
import networkx as nx
from aizynthfinder.search.retrostar.nodes import MoleculeNode
from aizynthfinder.chem.serialization import MoleculeSerializer, MoleculeDeserializer
from aizynthfinder.search.andor_trees import ReactionTreeFromAndOrTrace
def test_serialization_deserialization(
setup_star_ro... | root.mol | assert | complex_expr | tests/retrostar/test_retrostar_nodes.py | test_serialization_deserialization | 103 | null | |
MolecularAI/aizynthfinder | import random
import pytest
from aizynthfinder.search.dfpn.search_tree import SearchTree
def test_search(default_config, setup_policies, setup_stock):
root_smi = "CN1CCC(C(=O)c2cccc(NC(=O)c3ccc(F)cc3)c2F)CC1"
child1_smi = ["CN1CCC(Cl)CC1", "N#Cc1cccc(NC(=O)c2ccc(F)cc2)c1F", "O"]
child2_smi = ["CN1CCC(Cl)... | StopIteration) | pytest.raises | variable | tests/dfpn/test_search.py | test_search | 42 | null | |
MolecularAI/aizynthfinder | import numpy as np
import networkx as nx
from aizynthfinder.search.retrostar.nodes import MoleculeNode
from aizynthfinder.chem.serialization import MoleculeSerializer, MoleculeDeserializer
from aizynthfinder.search.andor_trees import ReactionTreeFromAndOrTrace
def test_create_stub(setup_star_root, get_action):
ro... | reaction | assert | variable | tests/retrostar/test_retrostar_nodes.py | test_create_stub | 40 | null | |
MolecularAI/aizynthfinder | import pytest
from aizynthfinder.chem import Molecule
from aizynthfinder.search.retrostar.cost import (
MoleculeCost,
RetroStarCost,
ZeroMoleculeCost,
)
def test_molecule_cost_retrostar(default_config, setup_mocked_model):
default_config.search.algorithm_config["molecule_cost"] = {
"cost": "ai... | molecule_cost, abs=0.001) | pytest.approx | complex_expr | tests/retrostar/test_retrostar_cost.py | test_molecule_cost_retrostar | 45 | null | |
MolecularAI/aizynthfinder | import pytest
from aizynthfinder.search.dfpn.nodes import MoleculeNode, BIG_INT
from aizynthfinder.search.dfpn import SearchTree
def setup_root(default_config):
def wrapper(smiles):
owner = SearchTree(default_config)
return MoleculeNode.create_root(smiles, config=default_config, owner=owner)
... | node.children[0] | assert | complex_expr | tests/dfpn/test_nodes.py | test_promising_child | 46 | null | |
MolecularAI/aizynthfinder | import pytest
from aizynthfinder.reactiontree import ReactionTree
def test_mcts_route_to_reactiontree(setup_linear_mcts, load_reaction_tree):
def remove_metadata(tree_dict):
if "metadata" in tree_dict:
tree_dict["metadata"] = {}
for child in tree_dict.get("children", []):
r... | 5 | assert | numeric_literal | tests/test_reactiontree.py | test_mcts_route_to_reactiontree | 20 | null | |
MolecularAI/aizynthfinder | import numpy as np
import networkx as nx
from aizynthfinder.search.retrostar.nodes import MoleculeNode
from aizynthfinder.chem.serialization import MoleculeSerializer, MoleculeDeserializer
from aizynthfinder.search.andor_trees import ReactionTreeFromAndOrTrace
def test_create_stub(setup_star_root, get_action):
ro... | 1 | assert | numeric_literal | tests/retrostar/test_retrostar_nodes.py | test_create_stub | 37 | null | |
MolecularAI/aizynthfinder | import pytest
from aizynthfinder.search.breadth_first.nodes import MoleculeNode
from aizynthfinder.chem.serialization import MoleculeSerializer, MoleculeDeserializer
def setup_root(default_config):
def wrapper(smiles):
return MoleculeNode.create_root(smiles, config=default_config)
return wrapper
def... | reaction | assert | variable | tests/breadth_first/test_nodes.py | test_create_stub | 33 | null | |
MolecularAI/aizynthfinder | from aizynthfinder.chem.serialization import MoleculeSerializer, MoleculeDeserializer
from aizynthfinder.chem import Molecule, TreeMolecule
def test_chaining():
serializer = MoleculeSerializer()
mol1 = TreeMolecule(parent=None, smiles="CCC", transform=1)
mol2 = TreeMolecule(smiles="CCO", parent=mol1)
... | mol2.smiles | assert | complex_expr | tests/chem/test_serialization.py | test_chaining | 83 | null | |
MolecularAI/aizynthfinder | import os
from unittest import mock
import pytest
from aizynthfinder.aizynthfinder import AiZynthFinder
from aizynthfinder.context.config import Configuration
from aizynthfinder.context.stock import StockException
def test_load_from_file(write_yaml):
filename = write_yaml(
{
"search": {
... | "OR" | assert | string_literal | tests/context/test_mcts_config.py | test_load_from_file | 48 | null | |
MolecularAI/aizynthfinder | import os
from tarfile import TarFile
import pytest
from aizynthfinder.utils import image
from aizynthfinder.chem import TreeMolecule, TemplatedRetroReaction
def setup_graph():
mol1 = TreeMolecule(smiles="CCCO", parent=None)
reaction = TemplatedRetroReaction(mol=mol1, smarts="")
return [mol1], [reaction]... | nfiles + 2 | assert | complex_expr | tests/utils/test_image.py | test_save_molecule_images | 28 | null | |
MolecularAI/aizynthfinder | from aizynthfinder.chem import (
FixedRetroReaction,
SmilesBasedRetroReaction,
TemplatedRetroReaction,
TreeMolecule,
UniqueMolecule,
hash_reactions,
)
def test_mapped_atom_bonds_rdkit():
smi = "CC(C)C[C:1](=O)[N:2](C)O"
mol = TreeMolecule(smiles=smi, parent=None)
smarts = (
... | [(9, 2), (2, 8)] | assert | collection | tests/chem/test_reaction.py | test_mapped_atom_bonds_rdkit | 239 | null | |
MolecularAI/aizynthfinder | from aizynthfinder.chem import TreeMolecule
from aizynthfinder.chem.serialization import MoleculeDeserializer, MoleculeSerializer
from aizynthfinder.search.mcts import MctsNode, MctsSearchTree, MctsState
def test_deserialize_node(setup_mcts_search, default_config):
serializer = MoleculeSerializer()
root, _, _ ... | str(root.state) | assert | func_call | tests/mcts/test_serialization.py | test_deserialize_node | 109 | null | |
MolecularAI/aizynthfinder | import pytest
import sys
import pandas as pd
from aizynthfinder.chem import Molecule
from aizynthfinder.context.stock import (
StockException,
)
from aizynthfinder.context.stock.queries import HAS_MOLBLOOM
from aizynthfinder.tools.make_stock import (
extract_plain_smiles,
extract_smiles_from_module,
m... | 4 | assert | numeric_literal | tests/context/test_stock.py | test_extract_smiles_from_module | 489 | null | |
MolecularAI/aizynthfinder | def test_select_leaf(setup_complete_mcts_tree):
tree, nodes = setup_complete_mcts_tree
leaf = tree.select_leaf()
assert leaf is | nodes[2] | assert | complex_expr | tests/mcts/test_tree.py | test_select_leaf | 15 | null | |
MolecularAI/aizynthfinder | import numpy as np
import networkx as nx
from aizynthfinder.search.retrostar.nodes import MoleculeNode
from aizynthfinder.chem.serialization import MoleculeSerializer, MoleculeDeserializer
from aizynthfinder.search.andor_trees import ReactionTreeFromAndOrTrace
def test_serialization_deserialization(
setup_star_ro... | reaction.smarts | assert | complex_expr | tests/retrostar/test_retrostar_nodes.py | test_serialization_deserialization | 109 | null | |
MolecularAI/aizynthfinder | from aizynthfinder.chem.serialization import MoleculeSerializer, MoleculeDeserializer
from aizynthfinder.chem import Molecule, TreeMolecule
def test_deserialize_tree_mols():
store = {
123: {
"smiles": "CCC",
"class": "TreeMolecule",
"parent": None,
"transform... | 1 | assert | numeric_literal | tests/chem/test_serialization.py | test_deserialize_tree_mols | 70 | null | |
MolecularAI/aizynthfinder | import pytest
from aizynthfinder.search.mcts.node import ParetoMctsNode
from aizynthfinder.search.mcts import MctsSearchTree
def generate_root(default_config):
def wrapper(smiles, config=None):
return ParetoMctsNode.create_root(
smiles, tree=None, config=config or default_config
)
... | "weighted-sum" | assert | string_literal | tests/mcts/test_multiobjective.py | test_setup_weighted_sum_tree | 87 | null | |
MolecularAI/aizynthfinder | import glob
import json
import os
import sys
from typing import Dict, List
import pandas as pd
import pytest
import yaml
from aizynthfinder.analysis import RouteCollection
from aizynthfinder.chem import MoleculeException
from aizynthfinder.interfaces import AiZynthApp
from aizynthfinder.interfaces.aizynthapp import m... | 1 | assert | numeric_literal | tests/test_cli.py | test_download_public_data | 430 | null | |
MolecularAI/aizynthfinder | import os
import gzip
import json
import pytest
import pandas as pd
from aizynthfinder.utils.files import (
cat_datafiles,
split_file,
start_processes,
read_datafile,
save_datafile,
)
def create_dummy_file(tmpdir, mocker):
patched_tempfile = mocker.patch("aizynthfinder.utils.files.tempfile.mk... | trees1 + trees2 | assert | complex_expr | tests/utils/test_file_utils.py | test_cat_hdf_trees | 126 | null | |
MolecularAI/aizynthfinder | import os
import gzip
import json
import pytest
import pandas as pd
from aizynthfinder.utils.files import (
cat_datafiles,
split_file,
start_processes,
read_datafile,
save_datafile,
)
def create_dummy_file(tmpdir, mocker):
patched_tempfile = mocker.patch("aizynthfinder.utils.files.tempfile.mk... | "a\nb\nc" | assert | string_literal | tests/utils/test_file_utils.py | test_split_file_odd | 61 | null | |
MolecularAI/aizynthfinder | import os
from tarfile import TarFile
import numpy as np
import pytest
from aizynthfinder.analysis import TreeAnalysis, RouteCollection
from aizynthfinder.analysis.routes import SUPPORT_CLUSTERING
from aizynthfinder.analysis.utils import RouteSelectionArguments
from aizynthfinder.reactiontree import ReactionTree
from... | 3 | assert | numeric_literal | tests/test_analysis.py | test_sort_nodes_multiobjective | 33 | null | |
MolecularAI/aizynthfinder | import pytest
from aizynthfinder.reactiontree import ReactionTree
def test_reactiontree_child_reactions(load_reaction_tree):
dict_ = load_reaction_tree("branched_route.json")
rt = ReactionTree.from_dict(dict_)
reactions = list(rt.reactions())
child_reactions = rt.child_reactions(reactions[0])
chi... | 1 | assert | numeric_literal | tests/test_reactiontree.py | test_reactiontree_child_reactions | 186 | null | |
MolecularAI/aizynthfinder | import logging
import pandas as pd
import pytest
from aizynthfinder.aizynthfinder import AiZynthFinder
def state_smiles(state):
return [mol.smiles for mol in state.mols]
def test_non_broken_frozen_bond_filter(setup_aizynthfinder, shared_datadir):
root_smi = "CN1CCC(C(=O)c2cccc([NH:1][C:2](=O)c3ccc(F)cc3)c2F)... | 3 | assert | numeric_literal | tests/test_finder.py | test_non_broken_frozen_bond_filter | 134 | null | |
MolecularAI/aizynthfinder | import numpy as np
import networkx as nx
from aizynthfinder.search.retrostar.nodes import MoleculeNode
from aizynthfinder.chem.serialization import MoleculeSerializer, MoleculeDeserializer
from aizynthfinder.search.andor_trees import ReactionTreeFromAndOrTrace
def test_serialization_deserialization(
setup_star_ro... | grandchild2.mol | assert | complex_expr | tests/retrostar/test_retrostar_nodes.py | test_serialization_deserialization | 115 | null | |
MolecularAI/aizynthfinder | from aizynthfinder.aizynthfinder import AiZynthExpander
def test_expander_defaults(get_one_step_expansion, setup_policies):
expander = AiZynthExpander()
setup_policies(get_one_step_expansion, config=expander.config)
smi = "CCCCOc1ccc(CC(=O)N(C)O)cc1"
reactions = expander.do_expansion(smi)
assert... | 2 | assert | numeric_literal | tests/test_expander.py | test_expander_defaults | 11 | null | |
MolecularAI/aizynthfinder | import os
import gzip
import json
import pytest
import pandas as pd
from aizynthfinder.utils.files import (
cat_datafiles,
split_file,
start_processes,
read_datafile,
save_datafile,
)
def create_dummy_file(tmpdir, mocker):
patched_tempfile = mocker.patch("aizynthfinder.utils.files.tempfile.mk... | data2.a.to_list() | assert | func_call | tests/utils/test_file_utils.py | test_save_load_datafile_roundtrip | 145 | null | |
MolecularAI/aizynthfinder | import numpy as np
from aizynthfinder.search.retrostar.search_tree import SearchTree
from aizynthfinder.chem.serialization import MoleculeSerializer
def test_serialization_deserialization(
mocker, setup_search_tree, tmpdir, default_config
):
tree = setup_search_tree
tree.one_iteration()
mocked_json_d... | len(tree.root.children) | assert | func_call | tests/retrostar/test_retrostar.py | test_serialization_deserialization | 107 | null | |
MolecularAI/aizynthfinder | import os
import gzip
import json
import pytest
import pandas as pd
from aizynthfinder.utils.files import (
cat_datafiles,
split_file,
start_processes,
read_datafile,
save_datafile,
)
def create_dummy_file(tmpdir, mocker):
patched_tempfile = mocker.patch("aizynthfinder.utils.files.tempfile.mk... | "a\nb" | assert | string_literal | tests/utils/test_file_utils.py | test_split_file_even | 46 | null | |
MolecularAI/aizynthfinder | from aizynthfinder.chem import (
FixedRetroReaction,
SmilesBasedRetroReaction,
TemplatedRetroReaction,
TreeMolecule,
UniqueMolecule,
hash_reactions,
)
def test_smiles_based_retroreaction():
mol = TreeMolecule(smiles="CNC(C)=O", parent=None)
reaction = SmilesBasedRetroReaction(mol, react... | "CC(=O)O" | assert | string_literal | tests/chem/test_reaction.py | test_smiles_based_retroreaction | 91 | null | |
MolecularAI/aizynthfinder | import logging
import pandas as pd
import pytest
from aizynthfinder.aizynthfinder import AiZynthFinder
def state_smiles(state):
return [mol.smiles for mol in state.mols]
def test_broken_frozen_bond_filter(setup_aizynthfinder, shared_datadir):
root_smi = "CN1CCC(C(=O)c2cccc([NH:1][C:2](=O)c3ccc(F)cc3)c2F)CC1"... | 2 | assert | numeric_literal | tests/test_finder.py | test_broken_frozen_bond_filter | 98 | null | |
MolecularAI/aizynthfinder | def test_route_to_node(setup_complete_mcts_tree):
tree, nodes = setup_complete_mcts_tree
actions, route_nodes = nodes[2].path_to()
assert len(actions) == 2
assert len(nodes) == 3
assert nodes[0] == route_nodes[0]
assert nodes[1] == route_nodes[1]
assert nodes[2] == | route_nodes[2] | assert | complex_expr | tests/mcts/test_tree.py | test_route_to_node | 40 | null | |
MolecularAI/aizynthfinder | import numpy as np
from aizynthfinder.search.retrostar.search_tree import SearchTree
from aizynthfinder.chem.serialization import MoleculeSerializer
def test_one_expansion_with_finder(setup_aizynthfinder):
"""
Test the building of this tree:
root
|
child 1
... | root_smi | assert | variable | tests/retrostar/test_retrostar.py | test_one_expansion_with_finder | 52 | null | |
MolecularAI/aizynthfinder | import pytest
from aizynthfinder.chem import TreeMolecule
from aizynthfinder.context.policy import (
MultiExpansionStrategy,
TemplateBasedExpansionStrategy,
)
from aizynthfinder.utils.exceptions import PolicyException
def test_weighted_multi_expansion_strategy(
default_config, setup_template_expansion_pol... | [0.1944, 0.0556, 0.5833, 0.1667] | assert | collection | tests/context/test_expansion_strategies.py | test_weighted_multi_expansion_strategy | 92 | null | |
MolecularAI/aizynthfinder | import pytest
from aizynthfinder.context.collection import ContextCollection
def test_add_single_item():
collection = StringCollection()
collection.load("key1", "value1")
assert len(collection) == | 1 | assert | numeric_literal | tests/context/test_collection.py | test_add_single_item | 31 | null | |
MolecularAI/aizynthfinder | import pytest
from aizynthfinder.utils.loading import load_dynamic_class
def test_incorrect_class():
bad_class = "ReactionTreee"
with pytest.raises( | ValueError, match=bad_class) | pytest.raises | complex_expr | tests/utils/test_dynamic_loading.py | test_incorrect_class | 43 | null | |
MolecularAI/aizynthfinder | import pytest
import sys
import pandas as pd
from aizynthfinder.chem import Molecule
from aizynthfinder.context.stock import (
StockException,
)
from aizynthfinder.context.stock.queries import HAS_MOLBLOOM
from aizynthfinder.tools.make_stock import (
extract_plain_smiles,
extract_smiles_from_module,
m... | stock | assert | variable | tests/context/test_stock.py | test_mol_in_stock | 119 | null | |
MolecularAI/aizynthfinder | import numpy as np
import networkx as nx
from aizynthfinder.search.retrostar.nodes import MoleculeNode
from aizynthfinder.chem.serialization import MoleculeSerializer, MoleculeDeserializer
from aizynthfinder.search.andor_trees import ReactionTreeFromAndOrTrace
def test_serialization_deserialization(
setup_star_ro... | root.value | assert | complex_expr | tests/retrostar/test_retrostar_nodes.py | test_serialization_deserialization | 104 | null | |
MolecularAI/aizynthfinder | from networkx import get_node_attributes, set_node_attributes
import numpy as np
import pytest
from aizynthfinder.chem import Molecule, UniqueMolecule
from aizynthfinder.context.config import Configuration
from aizynthfinder.context.scoring import (
AverageTemplateOccurrenceScorer,
BrokenBondsScorer,
Combi... | 0 | assert | numeric_literal | tests/context/test_score.py | test_template_occurrence_scorer_no_metadata | 88 | null | |
MolecularAI/aizynthfinder | def test_promising_child_of_root(setup_mcts_search):
root, _, _ = setup_mcts_search
root.expand()
child = root.promising_child()
view = root.children_view()
assert view["objects"][0] is child
assert root.children == [child]
assert root[child]["visitations"] == | 1 | assert | numeric_literal | tests/mcts/test_node.py | test_promising_child_of_root | 80 | null | |
MolecularAI/aizynthfinder | import pytest
from aizynthfinder.search.mcts.node import ParetoMctsNode
from aizynthfinder.search.mcts import MctsSearchTree
def generate_root(default_config):
def wrapper(smiles, config=None):
return ParetoMctsNode.create_root(
smiles, tree=None, config=config or default_config
)
... | view_post["visitations"][1:] | assert | complex_expr | tests/mcts/test_multiobjective.py | test_backpropagate | 71 | null | |
MolecularAI/aizynthfinder | import numpy as np
import networkx as nx
from aizynthfinder.search.retrostar.nodes import MoleculeNode
from aizynthfinder.chem.serialization import MoleculeSerializer, MoleculeDeserializer
from aizynthfinder.search.andor_trees import ReactionTreeFromAndOrTrace
def test_create_stub(setup_star_root, get_action):
ro... | 2 | assert | numeric_literal | tests/retrostar/test_retrostar_nodes.py | test_create_stub | 38 | null | |
MolecularAI/aizynthfinder | import os
from tarfile import TarFile
import numpy as np
import pytest
from aizynthfinder.analysis import TreeAnalysis, RouteCollection
from aizynthfinder.analysis.routes import SUPPORT_CLUSTERING
from aizynthfinder.analysis.utils import RouteSelectionArguments
from aizynthfinder.reactiontree import ReactionTree
from... | 6 | assert | numeric_literal | tests/test_analysis.py | test_tree_statistics | 101 | null | |
MolecularAI/aizynthfinder | from aizynthfinder.chem.serialization import MoleculeSerializer, MoleculeDeserializer
from aizynthfinder.chem import Molecule, TreeMolecule
def test_deserialize_single_mol():
store = {123: {"smiles": "CCC", "class": "Molecule"}}
deserializer = MoleculeDeserializer(store)
assert deserializer[123].smiles =... | "CCC" | assert | string_literal | tests/chem/test_serialization.py | test_deserialize_single_mol | 50 | null |
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