repo_id stringclasses 409
values | prefix large_stringlengths 34 36.3k | target large_stringlengths 1 498 | assertion_type stringclasses 31
values | difficulty stringclasses 8
values | test_file stringlengths 10 121 | test_function stringlengths 1 104 | test_class stringlengths 0 51 | lineno int32 2 11.3k | commit_idx int32 |
|---|---|---|---|---|---|---|---|---|---|
modelcontextprotocol/python-sdk | from typing import Any
import pytest
from pydantic import BaseModel, Field
from mcp import Client, types
from mcp.client.session import ClientSession, ElicitationFnT
from mcp.server.mcpserver import Context, MCPServer
from mcp.server.session import ServerSession
from mcp.shared._context import RequestContext
from mcp... | "Guest" | assert | string_literal | tests/server/mcpserver/test_elicitation.py | callback_schema_verify | 283 | null | |
modelcontextprotocol/python-sdk | import pytest
from mcp.server.experimental.request_context import Experimental
from mcp.shared.exceptions import MCPError
from mcp.types import (
METHOD_NOT_FOUND,
TASK_FORBIDDEN,
TASK_OPTIONAL,
TASK_REQUIRED,
ClientCapabilities,
ClientTasksCapability,
TaskMetadata,
Tool,
ToolExecut... | True | assert | bool_literal | tests/experimental/tasks/test_request_context.py | test_is_task_true_when_metadata_present | 22 | null | |
modelcontextprotocol/python-sdk | from mcp.server.lowlevel.helper_types import ReadResourceContents
def test_read_resource_contents_with_metadata():
"""Test that ReadResourceContents accepts meta parameter.
ReadResourceContents is an internal helper type used by the low-level MCP server.
When a resource is read, the server creates a ReadR... | metadata | assert | variable | tests/server/lowlevel/test_helper_types.py | test_read_resource_contents_with_metadata | 31 | null | |
modelcontextprotocol/python-sdk | import sys
from pathlib import Path
import pytest
from inline_snapshot import snapshot
from pytest_examples import CodeExample, EvalExample, find_examples
from mcp import Client
from mcp.types import CallToolResult, TextContent, TextResourceContents
@pytest.mark.anyio
async def test_desktop(monkeypatch: pytest.Monke... | content.text | assert | complex_expr | tests/test_examples.py | test_desktop | 91 | null | |
modelcontextprotocol/python-sdk | import pytest
from mcp import Client, types
from mcp.client._memory import InMemoryTransport
from mcp.server import Server, ServerRequestContext
from mcp.server.mcpserver import MCPServer
from mcp.types import ListResourcesResult, Resource
def simple_server() -> Server:
"""Create a simple MCP server for testing."... | 0 | assert | numeric_literal | tests/client/transports/test_memory.py | test_list_tools | 79 | null | |
modelcontextprotocol/python-sdk | import json
from typing import Any
import pytest
from pydantic import BaseModel
from mcp.server.mcpserver import MCPServer
from mcp.server.mcpserver.resources import FunctionResource, ResourceTemplate
from mcp.types import Annotations
class TestResourceTemplateMetadata:
def test_template_from_function_with_meta... | metadata | assert | variable | tests/server/mcpserver/resources/test_resource_template.py | test_template_from_function_with_metadata | TestResourceTemplateMetadata | 281 | null |
modelcontextprotocol/python-sdk | from pathlib import Path
from tempfile import NamedTemporaryFile
import pytest
from pydantic import AnyUrl
from mcp.server.mcpserver.resources import FileResource, FunctionResource, ResourceManager, ResourceTemplate
def temp_file():
"""Create a temporary file for testing.
File is automatically cleaned up af... | metadata | assert | variable | tests/server/mcpserver/resources/test_resource_manager.py | test_add_template_with_metadata | TestResourceManagerMetadata | 159 | null |
modelcontextprotocol/python-sdk | import multiprocessing
import socket
from collections.abc import AsyncGenerator, Generator
from contextlib import asynccontextmanager
import pytest
from starlette.applications import Starlette
from starlette.routing import Mount
from mcp import types
from mcp.client.session import ClientSession
from mcp.client.stream... | None | assert | none_literal | tests/client/test_http_unicode.py | test_streamable_http_client_unicode_tool_call | 196 | null | |
modelcontextprotocol/python-sdk | from collections.abc import Callable
import pytest
from mcp import Client, types
from mcp.server import Server, ServerRequestContext
from mcp.server.mcpserver import MCPServer
from mcp.types import ListToolsResult
from .conftest import StreamSpyCollection
pytestmark = pytest.mark.anyio
async def full_featured_serv... | 0 | assert | numeric_literal | tests/client/test_list_methods_cursor.py | test_list_tools_with_strict_server_validation | 103 | null | |
modelcontextprotocol/python-sdk | import contextlib
from unittest import mock
import httpx
import pytest
import mcp
from mcp import types
from mcp.client.session_group import (
ClientSessionGroup,
ClientSessionParameters,
SseServerParameters,
StreamableHttpParameters,
)
from mcp.client.stdio import StdioServerParameters
from mcp.share... | group.tools | assert | complex_expr | tests/client/test_session_group.py | test_client_session_group_connect_to_server | 114 | null | |
modelcontextprotocol/python-sdk | from __future__ import annotations
import anyio
import pytest
from mcp import types
from mcp.client.session import DEFAULT_CLIENT_INFO, ClientSession
from mcp.shared._context import RequestContext
from mcp.shared.message import SessionMessage
from mcp.shared.session import RequestResponder
from mcp.shared.version imp... | None | assert | none_literal | tests/client/test_session.py | test_client_capabilities_default | 379 | null | |
modelcontextprotocol/python-sdk | from collections.abc import AsyncIterator
from contextlib import asynccontextmanager
from dataclasses import dataclass, field
import anyio
import pytest
from anyio import Event
from anyio.abc import TaskGroup
from mcp import Client
from mcp.server import Server, ServerRequestContext
from mcp.shared.experimental.tasks... | 2 | assert | numeric_literal | tests/experimental/tasks/client/test_tasks.py | test_session_experimental_list_tasks | 227 | null | |
modelcontextprotocol/python-sdk | import pytest
from mcp import Client
from mcp.client.session import ClientSession
from mcp.server.mcpserver import MCPServer
from mcp.shared._context import RequestContext
from mcp.types import (
CreateMessageRequestParams,
CreateMessageResult,
CreateMessageResultWithTools,
SamplingMessage,
TextCon... | True | assert | bool_literal | tests/client/test_sampling_callback.py | test_sampling_callback | 55 | null | |
modelcontextprotocol/python-sdk | import pytest
from mcp import Client, types
from mcp.server import Server, ServerRequestContext
from mcp.types import (
ListResourcesResult,
PaginatedRequestParams,
ReadResourceRequestParams,
ReadResourceResult,
TextResourceContents,
)
pytestmark = pytest.mark.anyio
async def test_relative_uri_ro... | uri_map | assert | variable | tests/issues/test_1574_resource_uri_validation.py | test_relative_uri_roundtrip | 59 | null | |
modelcontextprotocol/python-sdk | from unittest.mock import AsyncMock, Mock
import pytest
from mcp import types
from mcp.server.lowlevel.server import Server
from mcp.server.session import ServerSession
from mcp.shared.session import RequestResponder
@pytest.mark.anyio
@pytest.mark.parametrize(
"exception_class,message",
[
(ValueErro... | "error" | assert | string_literal | tests/server/test_lowlevel_exception_handling.py | test_exception_handling_with_raise_exceptions_false | 50 | null | |
modelcontextprotocol/python-sdk | from collections.abc import AsyncIterator
from dataclasses import dataclass
import anyio
import pytest
from anyio import Event
from anyio.abc import TaskGroup
from anyio.streams.memory import MemoryObjectReceiveStream, MemoryObjectSendStream
from mcp import types
from mcp.client.experimental.task_handlers import Expe... | 1 | assert | numeric_literal | tests/experimental/tasks/client/test_handlers.py | test_client_handles_get_task_result_request | 227 | null | |
modelcontextprotocol/python-sdk | import contextlib
from unittest import mock
import httpx
import pytest
import mcp
from mcp import types
from mcp.client.session_group import (
ClientSessionGroup,
ClientSessionParameters,
SseServerParameters,
StreamableHttpParameters,
)
from mcp.client.stdio import StdioServerParameters
from mcp.share... | group._tools | assert | complex_expr | tests/client/test_session_group.py | test_client_session_group_disconnect_from_server | 208 | null | |
modelcontextprotocol/python-sdk | import anyio
import pytest
from mcp import Client
from mcp.server import Server, ServerRequestContext
from mcp.shared.exceptions import MCPError
from mcp.types import (
CallToolRequest,
CallToolRequestParams,
CallToolResult,
CancelledNotification,
CancelledNotificationParams,
ListToolsResult,
... | 2 | assert | numeric_literal | tests/server/test_cancel_handling.py | test_server_remains_functional_after_cancel | 92 | null | |
modelcontextprotocol/python-sdk | import pytest
from mcp import Client, types
from mcp.server import Server, ServerRequestContext
from mcp.types import (
ListResourcesResult,
PaginatedRequestParams,
ReadResourceRequestParams,
ReadResourceResult,
TextResourceContents,
)
pytestmark = pytest.mark.anyio
async def test_relative_uri_ro... | uri_str | assert | variable | tests/issues/test_1574_resource_uri_validation.py | test_relative_uri_roundtrip | 67 | null | |
modelcontextprotocol/python-sdk | from collections.abc import Callable
from dataclasses import dataclass
from typing import Annotated, Any, Final, NamedTuple, TypedDict
import annotated_types
import pytest
from dirty_equals import IsPartialDict
from pydantic import BaseModel, Field
from mcp.server.mcpserver.exceptions import InvalidSignature
from mcp... | "hello" | assert | string_literal | tests/server/mcpserver/test_func_metadata.py | test_str_vs_list_str | 172 | null | |
modelcontextprotocol/python-sdk | import pytest
from pydantic import FileUrl
from mcp import Client
from mcp.client.session import ClientSession
from mcp.server.mcpserver import MCPServer
from mcp.server.mcpserver.server import Context
from mcp.shared._context import RequestContext
from mcp.types import ListRootsResult, Root, TextContent
@pytest.mark... | "true" | assert | string_literal | tests/client/test_list_roots_callback.py | test_list_roots_callback | 40 | null | |
modelcontextprotocol/python-sdk | from collections.abc import AsyncIterator
from dataclasses import dataclass
import anyio
import pytest
from anyio import Event
from anyio.abc import TaskGroup
from anyio.streams.memory import MemoryObjectReceiveStream, MemoryObjectSendStream
from mcp import types
from mcp.client.experimental.task_handlers import Expe... | 2 | assert | numeric_literal | tests/experimental/tasks/client/test_handlers.py | test_client_handles_list_tasks_request | 283 | null | |
modelcontextprotocol/python-sdk | from __future__ import annotations
import anyio
import pytest
from mcp import types
from mcp.client.session import DEFAULT_CLIENT_INFO, ClientSession
from mcp.shared._context import RequestContext
from mcp.shared.message import SessionMessage
from mcp.shared.session import RequestResponder
from mcp.shared.version imp... | True | assert | bool_literal | tests/client/test_session.py | test_client_capabilities_with_custom_callbacks | 465 | null | |
modelcontextprotocol/python-sdk | import sys
from pathlib import Path
import pytest
from inline_snapshot import snapshot
from pytest_examples import CodeExample, EvalExample, find_examples
from mcp import Client
from mcp.types import CallToolResult, TextContent, TextResourceContents
@pytest.mark.anyio
async def test_desktop(monkeypatch: pytest.Monke... | 1 | assert | numeric_literal | tests/test_examples.py | test_desktop | 84 | null | |
modelcontextprotocol/python-sdk | from datetime import datetime, timezone
from typing import Any
import anyio
import pytest
from mcp import Client
from mcp.client.session import ClientSession
from mcp.server import Server, ServerRequestContext
from mcp.server.lowlevel import NotificationOptions
from mcp.server.models import InitializationOptions
from... | 1 | assert | numeric_literal | tests/experimental/tasks/server/test_server.py | test_default_task_handlers_via_enable_tasks | 363 | null | |
modelcontextprotocol/python-sdk | from datetime import datetime, timezone
from typing import Any
import anyio
import pytest
from mcp import Client
from mcp.client.session import ClientSession
from mcp.server import Server, ServerRequestContext
from mcp.server.lowlevel import NotificationOptions
from mcp.server.models import InitializationOptions
from... | True | assert | bool_literal | tests/experimental/tasks/server/test_server.py | test_task_metadata_is_task_property | 286 | null | |
modelcontextprotocol/python-sdk | from collections.abc import Callable
from dataclasses import dataclass
from typing import Annotated, Any, Final, NamedTuple, TypedDict
import annotated_types
import pytest
from dirty_equals import IsPartialDict
from pydantic import BaseModel, Field
from mcp.server.mcpserver.exceptions import InvalidSignature
from mcp... | "test" | assert | string_literal | tests/server/mcpserver/test_func_metadata.py | test_basemodel_reserved_names_validation | 1,147 | null | |
modelcontextprotocol/python-sdk | from pathlib import Path
import anyio
import pytest
from anyio.abc import TaskStatus
from anyio.streams.memory import MemoryObjectReceiveStream, MemoryObjectSendStream
from mcp import types
from mcp.client.session import ClientSession
from mcp.server import Server, ServerRequestContext
from mcp.shared.exceptions impo... | str(exc_info.value) | assert | func_call | tests/issues/test_88_random_error.py | client | 98 | null | |
modelcontextprotocol/python-sdk | from datetime import datetime, timezone
import anyio
import pytest
from mcp.shared.experimental.tasks.message_queue import InMemoryTaskMessageQueue, QueuedMessage
from mcp.shared.experimental.tasks.resolver import Resolver
from mcp.types import JSONRPCNotification, JSONRPCRequest
def queue() -> InMemoryTaskMessageQu... | True | assert | bool_literal | tests/experimental/tasks/test_message_queue.py | test_is_empty | TestInMemoryTaskMessageQueue | 95 | null |
modelcontextprotocol/python-sdk | import logging
from typing import Any
import pytest
from mcp import Client
from mcp.server import Server, ServerRequestContext
from mcp.types import (
CallToolRequestParams,
CallToolResult,
ListToolsResult,
PaginatedRequestParams,
TextContent,
Tool,
)
def _make_server(
tools: list[Tool],
... | caplog.text | assert | complex_expr | tests/client/test_output_schema_validation.py | test_tool_not_listed_warning | 165 | null | |
modelcontextprotocol/python-sdk | from unittest.mock import AsyncMock, MagicMock
import pytest
from mcp.server.context import ServerRequestContext
from mcp.server.experimental.request_context import Experimental
from mcp.server.mcpserver import Context
pytestmark = pytest.mark.anyio
async def test_progress_token_zero_first_call():
"""Test that ... | 3 | assert | numeric_literal | tests/issues/test_176_progress_token.py | test_progress_token_zero_first_call | 37 | null | |
modelcontextprotocol/python-sdk | from datetime import datetime, timezone
import anyio
import pytest
from mcp.shared.experimental.tasks.message_queue import InMemoryTaskMessageQueue, QueuedMessage
from mcp.shared.experimental.tasks.resolver import Resolver
from mcp.types import JSONRPCNotification, JSONRPCRequest
def queue() -> InMemoryTaskMessageQu... | [] | assert | collection | tests/experimental/tasks/test_message_queue.py | test_clear_empty_queue | TestInMemoryTaskMessageQueue | 121 | null |
modelcontextprotocol/python-sdk | from collections.abc import Callable
import pytest
from mcp import Client, types
from mcp.server import Server, ServerRequestContext
from mcp.server.mcpserver import MCPServer
from mcp.types import ListToolsResult
from .conftest import StreamSpyCollection
pytestmark = pytest.mark.anyio
async def full_featured_serv... | 1 | assert | numeric_literal | tests/client/test_list_methods_cursor.py | test_list_methods_params_parameter | 74 | null | |
modelcontextprotocol/python-sdk | import pytest
from mcp import Client
from mcp.server import Server, ServerRequestContext
from mcp.types import (
CompleteRequestParams,
CompleteResult,
Completion,
PromptReference,
ResourceTemplateReference,
)
async def handle_completion(ctx: ServerRequestContext, params: CompleteRequestParams... | "test_db" | assert | string_literal | tests/server/test_completion_with_context.py | handle_completion | 135 | null | |
modelcontextprotocol/python-sdk | from typing import Any
import pytest
from mcp.types import (
LATEST_PROTOCOL_VERSION,
ClientCapabilities,
CreateMessageRequestParams,
CreateMessageResult,
CreateMessageResultWithTools,
Implementation,
InitializeRequest,
InitializeRequestParams,
JSONRPCRequest,
ListToolsResult,
... | 1 | assert | numeric_literal | tests/test_types.py | test_jsonrpc_request | 46 | null | |
modelcontextprotocol/python-sdk | import urllib.parse
import warnings
import jwt
import pytest
from pydantic import AnyHttpUrl, AnyUrl
from mcp.client.auth.extensions.client_credentials import (
ClientCredentialsOAuthProvider,
JWTParameters,
PrivateKeyJWTOAuthProvider,
RFC7523OAuthClientProvider,
SignedJWTParameters,
static_as... | token | assert | variable | tests/client/auth/extensions/test_client_credentials.py | test_returns_static_token | TestStaticAssertionProvider | 429 | null |
modelcontextprotocol/python-sdk | import json
import logging
from dataclasses import dataclass
from typing import Any, TypedDict
import pytest
from pydantic import BaseModel
from mcp.server.context import LifespanContextT, RequestT
from mcp.server.mcpserver import Context, MCPServer
from mcp.server.mcpserver.exceptions import ToolError
from mcp.serve... | "a" | assert | string_literal | tests/server/mcpserver/test_tool_manager.py | test_call_tool_with_list_str_or_str_input | TestCallTools | 287 | null |
modelcontextprotocol/python-sdk | import pytest
from pydantic import BaseModel
from mcp.server.mcpserver.resources import FunctionResource
class TestFunctionResource:
@pytest.mark.anyio
async def test_json_conversion(self):
"""Test automatic JSON conversion of non-string results."""
def get_data() -> dict[str, str]:
... | content | assert | variable | tests/server/mcpserver/resources/test_function_resources.py | test_json_conversion | TestFunctionResource | 73 | null |
modelcontextprotocol/python-sdk | from collections.abc import AsyncIterator
from contextlib import asynccontextmanager
from dataclasses import dataclass, field
import anyio
import pytest
from anyio import Event
from anyio.abc import TaskGroup
from mcp import Client
from mcp.server import Server, ServerRequestContext
from mcp.shared.experimental.tasks... | 1 | assert | numeric_literal | tests/experimental/tasks/client/test_tasks.py | test_session_experimental_get_task_result | 182 | null | |
modelcontextprotocol/python-sdk | import pytest
from mcp.server.mcpserver import MCPServer
from mcp.server.mcpserver.resources import FunctionResource, Resource
from mcp.types import Annotations
class TestResourceAnnotations:
@pytest.mark.anyio
async def test_resource_annotations_in_mcpserver(self):
"""Test resource annotations via M... | ["assistant"] | assert | collection | tests/server/mcpserver/resources/test_resources.py | test_resource_annotations_in_mcpserver | TestResourceAnnotations | 146 | null |
modelcontextprotocol/python-sdk | import subprocess
import sys
from pathlib import Path
from typing import Any
import pytest
from mcp.cli.cli import _build_uv_command, _get_npx_command, _parse_file_path # type: ignore[reportPrivateUsage]
@pytest.mark.parametrize(
"spec, expected_obj",
[
("server.py", None),
("foo.py:srv_obj"... | file.resolve() | assert | func_call | tests/cli/test_utils.py | test_parse_file_path_accepts_valid_specs | 23 | null | |
modelcontextprotocol/python-sdk | import pytest
from pydantic import BaseModel
from mcp.server.mcpserver.resources import FunctionResource
class TestFunctionResource:
def test_function_resource_creation(self):
"""Test creating a FunctionResource."""
def my_func() -> str: # pragma: no cover
return "test content"
... | my_func | assert | variable | tests/server/mcpserver/resources/test_function_resources.py | test_function_resource_creation | TestFunctionResource | 26 | null |
modelcontextprotocol/python-sdk | import pytest
from mcp import Client, types
from mcp.client._memory import InMemoryTransport
from mcp.server import Server, ServerRequestContext
from mcp.server.mcpserver import MCPServer
from mcp.types import ListResourcesResult, Resource
def simple_server() -> Server:
"""Create a simple MCP server for testing."... | None | assert | none_literal | tests/client/transports/test_memory.py | test_with_server | 57 | null | |
modelcontextprotocol/python-sdk | import base64
import time
from unittest import mock
from urllib.parse import parse_qs, quote, unquote, urlparse
import httpx
import pytest
from inline_snapshot import Is, snapshot
from pydantic import AnyHttpUrl, AnyUrl
from mcp.client.auth import OAuthClientProvider, PKCEParameters
from mcp.client.auth.exceptions im... | 1 | assert | numeric_literal | tests/client/test_auth.py | test_build_protected_resource_discovery_urls | TestOAuthFlow | 294 | null |
modelcontextprotocol/python-sdk | import multiprocessing
import socket
from collections.abc import AsyncGenerator, Generator
from contextlib import asynccontextmanager
import pytest
from starlette.applications import Starlette
from starlette.routing import Mount
from mcp import types
from mcp.client.session import ClientSession
from mcp.client.stream... | "user" | assert | string_literal | tests/client/test_http_unicode.py | test_streamable_http_client_unicode_prompts | 235 | null | |
modelcontextprotocol/python-sdk | import anyio
import pytest
from pydantic import BaseModel, Field
from mcp import Client, types
from mcp.client.session import ClientSession
from mcp.server.elicitation import CancelledElicitation, DeclinedElicitation, elicit_url
from mcp.server.mcpserver import Context, MCPServer
from mcp.server.session import ServerS... | "accept" | assert | string_literal | tests/server/mcpserver/test_url_elicitation.py | ask_name | 170 | null | |
modelcontextprotocol/python-sdk | import pytest
from mcp.shared.experimental.tasks.context import TaskContext
from mcp.shared.experimental.tasks.helpers import create_task_state, task_execution
from mcp.shared.experimental.tasks.in_memory_task_store import InMemoryTaskStore
from mcp.types import CallToolResult, TaskMetadata, TextContent
@pytest.mark.... | "working" | assert | string_literal | tests/experimental/tasks/server/test_context.py | test_task_context_properties | 20 | null | |
modelcontextprotocol/python-sdk | import errno
import os
import shutil
import sys
import tempfile
import textwrap
import time
import anyio
import pytest
from mcp.client.session import ClientSession
from mcp.client.stdio import (
StdioServerParameters,
_create_platform_compatible_process,
_terminate_process_tree,
stdio_client,
)
from m... | size2 | assert | variable | tests/client/test_stdio.py | test_nested_process_tree | TestChildProcessCleanup | 422 | null |
modelcontextprotocol/python-sdk | import anyio
import pytest
from mcp import Client
from mcp.server import Server, ServerRequestContext
from mcp.shared.exceptions import MCPError
from mcp.types import (
CallToolRequest,
CallToolRequestParams,
CallToolResult,
CancelledNotification,
CancelledNotificationParams,
ListToolsResult,
... | "text" | assert | string_literal | tests/server/test_cancel_handling.py | test_server_remains_functional_after_cancel | 89 | null | |
modelcontextprotocol/python-sdk | import pytest
from mcp.shared.experimental.tasks.context import TaskContext
from mcp.shared.experimental.tasks.helpers import create_task_state, task_execution
from mcp.shared.experimental.tasks.in_memory_task_store import InMemoryTaskStore
from mcp.types import CallToolResult, TaskMetadata, TextContent
@pytest.mark.... | task.task_id | assert | complex_expr | tests/experimental/tasks/server/test_context.py | test_task_context_properties | 18 | null | |
modelcontextprotocol/python-sdk | import pytest
from mcp.server.mcpserver import MCPServer
from mcp.types import Icon
pytestmark = pytest.mark.anyio
async def test_multiple_icons():
"""Test that multiple icons can be added to tools, resources, and prompts."""
# Create multiple test icons
icon1 = Icon(src="data:image/png;base64,icon1", m... | 3 | assert | numeric_literal | tests/issues/test_1338_icons_and_metadata.py | test_multiple_icons | 116 | null | |
modelcontextprotocol/python-sdk | import sys
import tempfile
import textwrap
from pathlib import Path
import anyio
import pytest
from mcp import ClientSession, StdioServerParameters
from mcp.client.stdio import _create_platform_compatible_process, stdio_client
from tests.shared.test_win32_utils import escape_path_for_python
@pytest.mark.anyio
async ... | "hello" | assert | string_literal | tests/issues/test_1027_win_unreachable_cleanup.py | test_lifespan_cleanup_executed | 99 | null | |
modelcontextprotocol/python-sdk | from typing import Any
import pytest
from mcp.types import (
LATEST_PROTOCOL_VERSION,
ClientCapabilities,
CreateMessageRequestParams,
CreateMessageResult,
CreateMessageResultWithTools,
Implementation,
InitializeRequest,
InitializeRequestParams,
JSONRPCRequest,
ListToolsResult,
... | [] | assert | collection | tests/test_types.py | test_tool_result_content | 114 | null | |
scikit-fingerprints/scikit-fingerprints | import numpy as np
import pytest
from numpy.testing import assert_equal
from rdkit.Chem import Mol
from sklearn.utils._param_validation import InvalidParameterError
from skfp.filters import MolecularWeightFilter
from skfp.preprocessing import MolFromSmilesTransformer
def smiles_light_mols() -> list[str]:
# less t... | len(y)) | assert_* | func_call | tests/filters/mol_weight.py | test_mol_weight_return_condition_indicators_transform_x_y | 233 | null | |
scikit-fingerprints/scikit-fingerprints | import numpy as np
import pytest
from numpy.testing import assert_equal
from skfp.filters import FAF4LeadlikeFilter
def smiles_passing_faf4_leadlike() -> list[str]:
return [
# paracetamol
"CC(=O)Nc1ccc(O)cc1",
# Ibuprofen
"CC(C)CC1=CC=C(C=C1)C(C)C(=O)O",
# caffeine
... | len(y)) | assert_* | func_call | tests/filters/faf4_leadlike.py | test_faf4_leadlike_return_condition_indicators_transform_x_y | 142 | null | |
scikit-fingerprints/scikit-fingerprints | import inspect
import pickle
from functools import partial
import numpy as np
import pytest
from numpy.testing import assert_allclose, assert_equal
from sklearn import clone
from sklearn.utils._testing import create_memmap_backed_data, set_random_state
from sklearn.utils.estimator_checks import (
check_dont_overwr... | len(X) | assert | func_call | tests/sklearn_compatibility/basic_checks.py | check_transformers_unfitted_stateless | 173 | null | |
scikit-fingerprints/scikit-fingerprints | import numpy as np
import pytest
from numpy.testing import assert_allclose, assert_equal
from rdkit.Chem.rdMolDescriptors import BCUT2D
from skfp.fingerprints import BCUT2DFingerprint
def gasteiger_allowed_mols(mols_list):
# Gasteiger partial charge model does not work for metals
# allowed elements: https://g... | len(y_skfp)) | assert_* | func_call | tests/fingerprints/bcut2d.py | test_bcut2d_transform_x_y | 73 | null | |
scikit-fingerprints/scikit-fingerprints | import pytest
from numpy.testing import assert_equal
from sklearn.utils._param_validation import InvalidParameterError
from skfp.datasets.moleculenet import (
load_bace,
load_bbbp,
load_clintox,
load_esol,
load_freesolv,
load_hiv,
load_lipophilicity,
load_moleculenet_benchmark,
load... | len(valid) | assert | func_call | tests/datasets/moleculenet.py | test_load_ogb_splits | 89 | null | |
scikit-fingerprints/scikit-fingerprints | import numpy as np
from mordred import Calculator, descriptors
from numpy.testing import assert_allclose, assert_equal
from scipy.sparse import csr_array
from skfp.fingerprints import MordredFingerprint
def test_mordred_fingerprint(smallest_smiles_list, smallest_mols_list):
mordred_fp = MordredFingerprint(n_jobs=... | X_seq) | assert_* | variable | tests/fingerprints/mordred_fp.py | test_mordred_fingerprint | 17 | null | |
scikit-fingerprints/scikit-fingerprints | import numpy as np
import pytest
from numpy.testing import assert_equal
from skfp.filters import FAF4DruglikeFilter
def smiles_passing_faf4_druglike() -> list[str]:
return [
# paracetamol
"CC(=O)Nc1ccc(O)cc1",
# Ibuprofen
"CC(C)CC1=CC=C(C=C1)C(C)C(=O)O",
# caffeine
... | (14,)) | assert_* | collection | tests/filters/faf4_druglike.py | test_faf4_druglike_condition_names | 132 | null | |
scikit-fingerprints/scikit-fingerprints | import os
import numpy as np
from numpy.testing import assert_equal
from scipy.sparse import csr_array, load_npz
from skfp.fingerprints import LingoFingerprint
def test_lingo_fingerprint_bit():
smiles = ["CC(=O)NCCC1=CNC2=C1C=C(C=C2)OC", "C[n]1cnc2N(C)C(=O)N(C)C(=O)c12"]
lingo_fp = LingoFingerprint()
X_s... | (2, 1024)) | assert_* | collection | tests/fingerprints/lingo.py | test_lingo_fingerprint_bit | 55 | null | |
scikit-fingerprints/scikit-fingerprints | import numpy as np
import pytest
from numpy.testing import assert_equal
from skfp.filters import RuleOfThreeFilter
def smiles_passing_basic_rule_of_three() -> list[str]:
return [
"C=CCNC(=S)NCc1ccccc1OC",
"C=CCOc1ccc(Br)cc1/C=N/O",
"c1ccc(-c2nnc3n2CCCC3)cc1",
]
def smiles_failing_basi... | len(y)) | assert_* | func_call | tests/filters/rule_of_three.py | test_basic_rule_of_three_return_condition_indicators_transform_x_y | 238 | null | |
scikit-fingerprints/scikit-fingerprints | import numpy as np
import pytest
from numpy.testing import assert_equal
from skfp.filters import OpreaFilter
def smiles_passing_oprea() -> list[str]:
return [
"C1CC1N2C=C(C(=O)C3=CC(=C(C=C32)N4CCNCC4)F)C(=O)O", # Ciprofloxacin
"CC(=O)CC(C1=CC=CC=C1)C2=C(C3=CC=CC=C3OC2=O)O", # Warfarin
]
def... | 0) | assert_* | numeric_literal | tests/filters/oprea.py | test_mols_failing_oprea_filter | 50 | null | |
scikit-fingerprints/scikit-fingerprints | import numpy as np
import pytest
from numpy.testing import assert_equal
from skfp.filters import RuleOfFourFilter
def smiles_passing_rule_of_four() -> list[str]:
return [
"c1ccc2oc(-c3ccc(Nc4nc(N5CCCCC5)nc(N5CCOCC5)n4)cc3)nc2c1",
"c1csc(-c2csc3nc(CN4CCOCC4)nc(NCc4ccc5c(c4)OCO5)c23)c1",
"CC... | len(y)) | assert_* | func_call | tests/filters/rule_of_four.py | test_rule_of_four_return_condition_indicators_transform_x_y | 159 | null | |
scikit-fingerprints/scikit-fingerprints | import numpy as np
from numpy.testing import assert_allclose, assert_equal
from rdkit.Chem.EState.Fingerprinter import FingerprintMol
from scipy.sparse import csr_array
from skfp.fingerprints import EStateFingerprint
def test_estate_bit_fingerprint(smiles_list, mols_list):
estate_fp = EStateFingerprint(variant="b... | np.uint8) | assert_* | complex_expr | tests/fingerprints/estate.py | test_estate_bit_fingerprint | 17 | null | |
scikit-fingerprints/scikit-fingerprints | import numpy as np
import pytest
from numpy.testing import assert_equal
from skfp.filters import FAF4LeadlikeFilter
def smiles_passing_faf4_leadlike() -> list[str]:
return [
# paracetamol
"CC(=O)Nc1ccc(O)cc1",
# Ibuprofen
"CC(C)CC1=CC=C(C=C1)C(C)C(=O)O",
# caffeine
... | 0) | assert_* | numeric_literal | tests/filters/faf4_leadlike.py | test_mols_failing_faf4_leadlike | 45 | null | |
scikit-fingerprints/scikit-fingerprints | import numpy as np
import pytest
from numpy.testing import assert_allclose
from skfp.metrics import bedroc_score, enrichment_factor, rie_score
def test_max_rie_score():
y_test = [0] * 90 + [1] * 10
y_score = [0] * 90 + [1] * 10
N = len(y_test)
n = sum(y_test)
alpha = 20
max_rie = (N / n) * (1... | max_rie) | assert_* | variable | tests/metrics/virtual_screening.py | test_max_rie_score | 55 | null | |
scikit-fingerprints/scikit-fingerprints | import numpy as np
import pytest
from numpy.testing import assert_equal
from rdkit.Chem import Mol
from skfp.filters import LipinskiFilter
def smiles_passing_lipinski() -> list[str]:
return [
# paracetamol
"CC(=O)Nc1ccc(O)cc1",
# caffeine
"CN1C=NC2=C1C(=O)N(C(=O)N2C)C",
# n... | len(y)) | assert_* | func_call | tests/filters/lipinski.py | test_lipinski_return_condition_indicators_transform_x_y | 193 | null | |
scikit-fingerprints/scikit-fingerprints | import numpy as np
import pytest
from numpy.testing import assert_equal
from rdkit.Chem import Mol, MolFromFASTA, MolToSmiles
from skfp.preprocessing import MolFromAminoseqTransformer
def sequence_list(fasta_list):
return [fst.split("\n")[1] for fst in fasta_list]
def peptide_list(fasta_list):
return [MolFro... | len(y_2)) | assert_* | func_call | tests/preprocessing/input_output/aminoseq.py | test_from_invalid_smiles_with_y | 95 | null | |
scikit-fingerprints/scikit-fingerprints | from inspect import getmembers, isfunction
import numpy as np
import rdkit.Chem.Fragments
from numpy.testing import assert_equal
from scipy.sparse import csr_array
from skfp.fingerprints import FunctionalGroupsFingerprint
def test_functional_groups_bit_fingerprint(smiles_list, mols_list):
fg_fp = FunctionalGroup... | X_rdkit) | assert_* | variable | tests/fingerprints/functional_groups.py | test_functional_groups_bit_fingerprint | 26 | null | |
scikit-fingerprints/scikit-fingerprints | import numpy as np
from numpy.testing import assert_equal
from scipy.sparse import csr_array
from skfp.fingerprints import MQNsFingerprint
def test_mqns_feature_names():
mqn_fp = MQNsFingerprint()
feature_names = mqn_fp.get_feature_names_out()
assert_equal(len(feature_names), mqn_fp.n_features_out)
a... | "C atoms") | assert_* | string_literal | tests/fingerprints/mqns.py | test_mqns_feature_names | 55 | null | |
scikit-fingerprints/scikit-fingerprints | import pytest
from numpy.testing import assert_equal
from sklearn.utils._param_validation import InvalidParameterError
from skfp.datasets.moleculenet import (
load_bace,
load_bbbp,
load_clintox,
load_esol,
load_freesolv,
load_hiv,
load_lipophilicity,
load_moleculenet_benchmark,
load... | train | assert | variable | tests/datasets/moleculenet.py | test_load_ogb_splits_as_dict | 104 | null | |
scikit-fingerprints/scikit-fingerprints | import pytest
from numpy.testing import assert_equal
from skfp.datasets.lrgb import (
load_lrgb_mol_benchmark,
load_lrgb_mol_dataset,
load_lrgb_mol_splits,
load_peptides_func,
load_peptides_struct,
)
from tests.datasets.test_utils import run_basic_dataset_checks
def get_dataset_names() -> list[str... | len(valid) | assert | func_call | tests/datasets/lrgb.py | test_load_lrgb_splits | 54 | null | |
scikit-fingerprints/scikit-fingerprints | import numpy as np
from numpy.testing import assert_equal
from rdkit.Chem import MolFromSmiles
from rdkit.Chem.rdMolDescriptors import GetMACCSKeysFingerprint
from scipy.sparse import csr_array
from skfp.fingerprints import MACCSFingerprint
def test_maccs_count_feature_names():
# we check a few selected feature n... | "NA(A)A") | assert_* | string_literal | tests/fingerprints/maccs.py | test_maccs_count_feature_names | 81 | null | |
scikit-fingerprints/scikit-fingerprints | import numpy as np
import pytest
from numpy.testing import assert_allclose, assert_equal
from rdkit import Chem
from rdkit.Chem import Mol
from skfp.model_selection.splitters.maxmin_split import (
maxmin_stratified_train_test_split,
maxmin_stratified_train_valid_test_split,
maxmin_train_test_split,
max... | v2) | assert_* | variable | tests/model_selection/splitters/maxmin_split.py | test_seed_consistency_train_valid_test_split | 65 | null | |
scikit-fingerprints/scikit-fingerprints | import numpy as np
import pytest
from numpy.testing import assert_allclose
from skfp.metrics import bedroc_score, enrichment_factor, rie_score
def test_max_enrichment_factor():
y_test = [0] * 90 + [1] * 10
y_score = [0] * 90 + [1] * 10
# if X >= n/N, max value is N/n
max_ef = len(y_test) / sum(y_test... | max_ef) | assert_* | variable | tests/metrics/virtual_screening.py | test_max_enrichment_factor | 29 | null | |
scikit-fingerprints/scikit-fingerprints | from collections.abc import Sequence
import pytest
from numpy.testing import assert_equal
from rdkit.Chem import Mol, MolToSmiles
from sklearn.utils._param_validation import InvalidParameterError
from skfp.preprocessing import (
MolFromAminoseqTransformer,
MolFromInchiTransformer,
MolFromSmilesTransformer... | output | assert | variable | tests/bases/base_preprocessor.py | test_base_verbose | 38 | null | |
scikit-fingerprints/scikit-fingerprints | import numpy as np
from numpy.testing import assert_equal
from rdkit.Chem import Mol
from skfp.preprocessing import MolFromSmilesTransformer, MolToSmilesTransformer
def test_from_invalid_smiles_with_y(smiles_list):
invalid_smiles_list = ["[H]=[H]", "invalid"]
all_smiles_list = smiles_list + invalid_smiles_lis... | len(y_2)) | assert_* | func_call | tests/preprocessing/input_output/smiles.py | test_from_invalid_smiles_with_y | 76 | null | |
scikit-fingerprints/scikit-fingerprints | import pytest
from numpy.testing import assert_equal
from sklearn.utils._param_validation import InvalidParameterError
from skfp.datasets.moleculenet import (
load_bace,
load_bbbp,
load_clintox,
load_esol,
load_freesolv,
load_hiv,
load_lipophilicity,
load_moleculenet_benchmark,
load... | valid | assert | variable | tests/datasets/moleculenet.py | test_load_ogb_splits_as_dict | 105 | null | |
scikit-fingerprints/scikit-fingerprints | import numpy as np
import pytest
from numpy.testing import assert_equal
from skfp.filters import GhoseFilter
def smiles_passing_ghose() -> list[str]:
return [
"CC(=O)C1=C(O)C(=O)N(CCc2c[nH]c3ccccc23)C1c1ccc(C)cc1",
r"CC(=O)C1C(=O)c2c(cccc2[N+](=O)[O-])/C1=N\c1ccccc1C",
"CC(=O)c1c(C)n(CC2CC... | 3) | assert_* | numeric_literal | tests/filters/ghose.py | test_mols_passing_with_violation_ghose | 56 | null | |
scikit-fingerprints/scikit-fingerprints | import numpy as np
import pytest
from numpy.testing import assert_equal
from rdkit.Chem import Mol
from skfp.filters import LipinskiFilter
def smiles_passing_lipinski() -> list[str]:
return [
# paracetamol
"CC(=O)Nc1ccc(O)cc1",
# caffeine
"CN1C=NC2=C1C(=O)N(C(=O)N2C)C",
# n... | 3) | assert_* | numeric_literal | tests/filters/lipinski.py | test_mols_failing_strict_lipinski | 64 | null | |
scikit-fingerprints/scikit-fingerprints | import numpy as np
from numpy.testing import assert_equal
from rdkit.Chem import MolFromSmiles
from rdkit.Chem.rdMolDescriptors import GetMACCSKeysFingerprint
from scipy.sparse import csr_array
from skfp.fingerprints import MACCSFingerprint
def test_maccs_count_feature_names():
# we check a few selected feature n... | "N") | assert_* | string_literal | tests/fingerprints/maccs.py | test_maccs_count_feature_names | 75 | null | |
scikit-fingerprints/scikit-fingerprints | import numpy as np
from numpy.testing import assert_equal
from scipy.sparse import csr_array
from skfp.fingerprints import LaggnerFingerprint
def test_laggner_feature_names():
# we check a few selected feature names
laggner_fp = LaggnerFingerprint()
feature_names = laggner_fp.get_feature_names_out()
... | "Allene") | assert_* | string_literal | tests/fingerprints/laggner.py | test_laggner_feature_names | 79 | null | |
scikit-fingerprints/scikit-fingerprints | import pytest
from numpy.testing import assert_equal
from rdkit.DataStructs import (
IntSparseIntVect,
LongSparseIntVect,
SparseBitVect,
UIntSparseIntVect,
ULongSparseIntVect,
)
from sklearn.utils._param_validation import InvalidParameterError
from skfp.bases.base_fp_transformer import BaseFingerpr... | output | assert | variable | tests/bases/base_fp_transformer.py | test_base_verbose | 46 | null | |
scikit-fingerprints/scikit-fingerprints | import pytest
from sklearn.utils._param_validation import InvalidParameterError
from skfp.datasets.moleculeace import (
load_chembl204_ki,
load_chembl214_ki,
load_chembl218_ec50,
load_chembl219_ki,
load_chembl228_ki,
load_chembl231_ki,
load_chembl233_ki,
load_chembl234_ki,
load_chem... | len(test) | assert | func_call | tests/datasets/moleculeace.py | test_load_moleculeace_splits | 100 | null | |
scikit-fingerprints/scikit-fingerprints | import numpy as np
import pytest
from numpy.testing import assert_equal
from skfp.metrics import extract_pos_proba
def test_extract_pos_proba_single_task():
n_samples = 10
predictions = np.random.rand(n_samples, 2)
predictions = extract_pos_proba(predictions)
assert_equal(predictions.shape, | (n_samples,)) | assert_* | collection | tests/metrics/utils.py | test_extract_pos_proba_single_task | 14 | null | |
scikit-fingerprints/scikit-fingerprints | import pytest
from sklearn.utils._param_validation import InvalidParameterError
from skfp.datasets.moleculeace import (
load_chembl204_ki,
load_chembl214_ki,
load_chembl218_ec50,
load_chembl219_ki,
load_chembl228_ki,
load_chembl231_ki,
load_chembl233_ki,
load_chembl234_ki,
load_chem... | 0 | assert | numeric_literal | tests/datasets/moleculeace.py | test_load_moleculeace_splits | 93 | null | |
scikit-fingerprints/scikit-fingerprints | import numpy as np
import pytest
from numpy.testing import assert_equal
from rdkit.Chem.rdMHFPFingerprint import MHFPEncoder
from scipy.sparse import csr_array
from sklearn.utils._param_validation import InvalidParameterError
from skfp.fingerprints import MHFPFingerprint
def test_mhfp_bit_fingerprint(smiles_list, mol... | X_rdkit) | assert_* | variable | tests/fingerprints/mhfp.py | test_mhfp_bit_fingerprint | 22 | null | |
scikit-fingerprints/scikit-fingerprints | import pytest
from numpy.testing import assert_allclose, assert_equal
from rdkit.Chem import Mol, MolFromSmiles
from skfp.filters.utils import (
get_max_num_fused_aromatic_rings,
get_max_ring_size,
get_non_carbon_to_carbon_ratio,
get_num_aromatic_rings,
get_num_carbon_atoms,
get_num_charged_fun... | 1 / 6) | assert_* | complex_expr | tests/filters/utils.py | test_get_non_carbon_to_carbon_ratio | 80 | null | |
scikit-fingerprints/scikit-fingerprints | import numpy as np
import pandas as pd
from numpy.testing import assert_equal
from skfp.utils import get_data_from_indices
def test_get_data_from_indices_numpy():
data = np.array([1, 2, 3, 4])
idxs = [0, 2]
selected_data = get_data_from_indices(data, idxs)
assert_equal(selected_data, | [1, 3]) | assert_* | collection | tests/utils/functions.py | test_get_data_from_indices_numpy | 12 | null | |
scikit-fingerprints/scikit-fingerprints | import numpy as np
import pytest
from numpy.testing import assert_equal
from skfp.filters import REOSFilter
def smiles_passing_reos() -> list[str]:
return [
"CC(C)CC1=CC=C(C=C1)C(C)C(=O)O", # Ibuprofren
"CN1CC[C@@]23CCCC[C@@H]2[C@@H]1CC4=C3C=C(C=C4)OC", # Dextromethorphan
]
def smiles_passi... | len(y)) | assert_* | func_call | tests/filters/reos.py | test_reos_return_condition_indicators_transform_x_y | 140 | null | |
scikit-fingerprints/scikit-fingerprints | import numpy as np
import pytest
from numpy.testing import assert_allclose, assert_equal
from rdkit.Chem.rdMolDescriptors import GetUSR
from skfp.fingerprints import USRFingerprint
def mols_conformers_3_plus_atoms(mols_conformers_list):
return [mol for mol in mols_conformers_list if mol.GetNumAtoms() >= 3]
def t... | X_rdkit) | assert_* | variable | tests/fingerprints/usr.py | test_usr_bit_fingerprint | 25 | null | |
scikit-fingerprints/scikit-fingerprints | import numpy as np
import pytest
from numpy.testing import assert_equal
from rdkit.Chem import Mol
from skfp.filters import LipinskiFilter
def smiles_passing_lipinski() -> list[str]:
return [
# paracetamol
"CC(=O)Nc1ccc(O)cc1",
# caffeine
"CN1C=NC2=C1C(=O)N(C(=O)N2C)C",
# n... | (4,)) | assert_* | collection | tests/filters/lipinski.py | test_lipinski_condition_names | 161 | null | |
scikit-fingerprints/scikit-fingerprints | import numpy as np
import pytest
from numpy.testing import assert_equal
from skfp.fingerprints import ElectroShapeFingerprint
from skfp.preprocessing import ConformerGenerator, MolFromSmilesTransformer
def mols_conformers_3_plus_atoms(mols_conformers_list):
# electroshape descriptor requires at least 3 atoms to w... | len(y_skfp)) | assert_* | func_call | tests/fingerprints/electroshape.py | test_electroshape_bit_fingerprint_transform_x_y | 33 | null | |
scikit-fingerprints/scikit-fingerprints | import numpy as np
import pytest
from numpy.testing import assert_equal
from skfp.filters import FAF4LeadlikeFilter
def smiles_passing_faf4_leadlike() -> list[str]:
return [
# paracetamol
"CC(=O)Nc1ccc(O)cc1",
# Ibuprofen
"CC(C)CC1=CC=C(C=C1)C(C)C(=O)O",
# caffeine
... | (15,)) | assert_* | collection | tests/filters/faf4_leadlike.py | test_faf4_leadlike_condition_names | 109 | null | |
scikit-fingerprints/scikit-fingerprints | import pytest
from sklearn.utils._param_validation import InvalidParameterError
from skfp.datasets.moleculeace import (
load_chembl204_ki,
load_chembl214_ki,
load_chembl218_ec50,
load_chembl219_ki,
load_chembl228_ki,
load_chembl231_ki,
load_chembl233_ki,
load_chembl234_ki,
load_chem... | test | assert | variable | tests/datasets/moleculeace.py | test_load_moleculeace_splits_as_dict | 116 | null | |
scikit-fingerprints/scikit-fingerprints | import numpy as np
import pytest
from numpy.testing import assert_equal
from skfp.filters import PfizerFilter
def smiles_passing_pfizer() -> list[str]:
return [
"COC(=O)c1ccccc1NC(=O)CSc1nc(O)c(-c2ccccc2)c(=O)[nH]1",
"CS(=O)(=O)NCc1nnc(SCc2ccccc2C(F)(F)F)o1",
"COCCCn1c(C)nnc1SCC(=O)NCc1ccc... | 3) | assert_* | numeric_literal | tests/filters/pfizer.py | test_mols_passing_with_violation_pfizer | 52 | null | |
scikit-fingerprints/scikit-fingerprints | import numpy as np
import pytest
from numpy.testing import assert_equal
from scipy.sparse import csr_array
from sklearn.utils._param_validation import InvalidParameterError
from skfp.bases.base_substructure_fp import BaseSubstructureFingerprint
def substructure_smiles_list() -> list[str]:
return [
"CCOC",... | np.uint32 | assert | complex_expr | tests/bases/base_substructure_fp.py | test_substructure_count_fingerprint | 40 | null | |
scikit-fingerprints/scikit-fingerprints | import numpy as np
from numpy.testing import assert_equal
from rdkit.Chem.rdFingerprintGenerator import (
GetMorganFeatureAtomInvGen,
GetMorganGenerator,
)
from scipy.sparse import csr_array
from skfp.fingerprints import ECFPFingerprint
def test_ecfp_bit_fingerprint(smiles_list, mols_list):
ecfp_fp = ECFP... | X_rdkit) | assert_* | variable | tests/fingerprints/ecfp.py | test_ecfp_bit_fingerprint | 19 | null | |
scikit-fingerprints/scikit-fingerprints | import numpy as np
import pytest
from numpy.testing import assert_equal
from rdkit.Chem.rdmolops import LayeredFingerprint as RDKitLayeredFingerprint
from scipy.sparse import csr_array
from sklearn.utils._param_validation import InvalidParameterError
from skfp.fingerprints import LayeredFingerprint
def test_layered_f... | X_rdkit) | assert_* | variable | tests/fingerprints/layered.py | test_layered_fingerprint | 16 | null |
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