repo_id stringclasses 400
values | commit_sha stringclasses 400
values | commit_index int32 0 951 | in_repo_split stringclasses 1
value | cross_repo_split stringclasses 1
value | test_file stringlengths 7 121 | test_function stringlengths 1 108 | assertion_type stringclasses 32
values | difficulty stringclasses 8
values | context_lines int32 3 600 | prefix large_stringlengths 44 113k | target large_stringlengths 1 498 | anchor_sha stringclasses 400
values | anchor_index int32 0 951 | qna_source stringclasses 1
value |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
gadievron/raptor | 4a510397258bda7fac55efdee938ce033c5b9274 | 7 | train | train | packages/exploit_feasibility/tests/test_strategies.py | test_can_detect_locally | assert | bool_literal | 30 | import pytest
from unittest.mock import patch, MagicMock
from packages.exploit_feasibility.profiles import (
TargetContext,
TargetProfile,
create_local_profile,
create_remote_profile,
create_web_profile,
create_kernel_profile,
)
from packages.exploit_feasibility.strategies import (
Analysis... | True | 4a510397258bda7fac55efdee938ce033c5b9274 | 7 | v2_extractor_at_anchor |
gadievron/raptor | 4a510397258bda7fac55efdee938ce033c5b9274 | 7 | train | train | packages/exploit_feasibility/tests/test_strategies.py | test_get_glibc_version_unknown | assert | none_literal | 31 | import pytest
from unittest.mock import patch, MagicMock
from packages.exploit_feasibility.profiles import (
TargetContext,
TargetProfile,
create_local_profile,
create_remote_profile,
create_web_profile,
create_kernel_profile,
)
from packages.exploit_feasibility.strategies import (
Analysis... | None | 4a510397258bda7fac55efdee938ce033c5b9274 | 7 | v2_extractor_at_anchor |
gadievron/raptor | 4a510397258bda7fac55efdee938ce033c5b9274 | 7 | train | train | packages/exploit_feasibility/tests/test_strategies.py | test_remote_analysis_uses_provided_glibc | assert | numeric_literal | 33 | import pytest
from unittest.mock import patch, MagicMock
from packages.exploit_feasibility.profiles import (
TargetContext,
TargetProfile,
create_local_profile,
create_remote_profile,
create_web_profile,
create_kernel_profile,
)
from packages.exploit_feasibility.strategies import (
Analysis... | 2.31 | 4a510397258bda7fac55efdee938ce033c5b9274 | 7 | v2_extractor_at_anchor |
gadievron/raptor | 4a510397258bda7fac55efdee938ce033c5b9274 | 7 | train | train | packages/exploit_feasibility/tests/test_strategies.py | test_should_not_skip_empirical_tests | assert | bool_literal | 30 | import pytest
from unittest.mock import patch, MagicMock
from packages.exploit_feasibility.profiles import (
TargetContext,
TargetProfile,
create_local_profile,
create_remote_profile,
create_web_profile,
create_kernel_profile,
)
from packages.exploit_feasibility.strategies import (
Analysis... | False | 4a510397258bda7fac55efdee938ce033c5b9274 | 7 | v2_extractor_at_anchor |
gadievron/raptor | 4a510397258bda7fac55efdee938ce033c5b9274 | 7 | train | train | packages/exploit_feasibility/tests/test_techniques.py | test_nonexistent_technique | assert | numeric_literal | 20 | import pytest
from ..techniques import (
TechniqueRequirements,
get_technique_requirements,
get_technique,
get_techniques_for_goal,
get_viable_techniques,
get_missing_primitives,
)
class TestGetMissingPrimitives:
def test_nonexistent_technique(self):
"""Test with non-existent techn... | 0 | 4a510397258bda7fac55efdee938ce033c5b9274 | 7 | v2_extractor_at_anchor |
gadievron/raptor | 4a510397258bda7fac55efdee938ce033c5b9274 | 7 | train | train | packages/exploit_feasibility/tests/test_techniques.py | test_returns_copy | assert | variable | 19 | import pytest
from ..techniques import (
TechniqueRequirements,
get_technique_requirements,
get_technique,
get_techniques_for_goal,
get_viable_techniques,
get_missing_primitives,
)
class TestGetTechniqueRequirements:
def test_returns_copy(self):
"""Test that function returns a fres... | t2 | 4a510397258bda7fac55efdee938ce033c5b9274 | 7 | v2_extractor_at_anchor |
gadievron/raptor | 4a510397258bda7fac55efdee938ce033c5b9274 | 7 | train | train | packages/exploit_feasibility/tests/test_techniques.py | test_existing_technique | assert | none_literal | 17 | import pytest
from ..techniques import (
TechniqueRequirements,
get_technique_requirements,
get_technique,
get_techniques_for_goal,
get_viable_techniques,
get_missing_primitives,
)
class TestGetTechnique:
def test_existing_technique(self):
"""Test getting an existing technique."""
... | None | 4a510397258bda7fac55efdee938ce033c5b9274 | 7 | v2_extractor_at_anchor |
gadievron/raptor | 4a510397258bda7fac55efdee938ce033c5b9274 | 7 | train | train | packages/exploit_feasibility/tests/test_techniques.py | test_missing_one | assert | variable | 20 | import pytest
from ..techniques import (
TechniqueRequirements,
get_technique_requirements,
get_technique,
get_techniques_for_goal,
get_viable_techniques,
get_missing_primitives,
)
class TestGetMissingPrimitives:
def test_missing_one(self):
"""Test when one primitive is missing."""... | missing | 4a510397258bda7fac55efdee938ce033c5b9274 | 7 | v2_extractor_at_anchor |
gadievron/raptor | 4a510397258bda7fac55efdee938ce033c5b9274 | 7 | train | train | packages/exploit_feasibility/tests/test_techniques.py | test_no_mitigations | assert | variable | 22 | import pytest
from ..techniques import (
TechniqueRequirements,
get_technique_requirements,
get_technique,
get_techniques_for_goal,
get_viable_techniques,
get_missing_primitives,
)
class TestGetViableTechniques:
def test_no_mitigations(self):
"""Test with no blocking mitigations.""... | tech_names | 4a510397258bda7fac55efdee938ce033c5b9274 | 7 | v2_extractor_at_anchor |
gadievron/raptor | 4a510397258bda7fac55efdee938ce033c5b9274 | 7 | train | train | packages/exploit_feasibility/tests/test_techniques.py | test_contains_expected_techniques | assert | variable | 25 | import pytest
from ..techniques import (
TechniqueRequirements,
get_technique_requirements,
get_technique,
get_techniques_for_goal,
get_viable_techniques,
get_missing_primitives,
)
class TestGetTechniqueRequirements:
def test_contains_expected_techniques(self):
"""Test that expecte... | techniques | 4a510397258bda7fac55efdee938ce033c5b9274 | 7 | v2_extractor_at_anchor |
gadievron/raptor | 4a510397258bda7fac55efdee938ce033c5b9274 | 7 | train | train | packages/exploit_feasibility/tests/test_techniques.py | test_basic_creation | assert | complex_expr | 26 | import pytest
from ..techniques import (
TechniqueRequirements,
get_technique_requirements,
get_technique,
get_techniques_for_goal,
get_viable_techniques,
get_missing_primitives,
)
class TestTechniqueRequirements:
def test_basic_creation(self):
"""Test creating a technique requirem... | req.provides | 4a510397258bda7fac55efdee938ce033c5b9274 | 7 | v2_extractor_at_anchor |
gadievron/raptor | 4a510397258bda7fac55efdee938ce033c5b9274 | 7 | train | train | packages/exploit_feasibility/tests/test_techniques.py | test_code_execution_goal | assert | complex_expr | 19 | import pytest
from ..techniques import (
TechniqueRequirements,
get_technique_requirements,
get_technique,
get_techniques_for_goal,
get_viable_techniques,
get_missing_primitives,
)
class TestGetTechniquesForGoal:
def test_code_execution_goal(self):
"""Test finding techniques that p... | tech.provides | 4a510397258bda7fac55efdee938ce033c5b9274 | 7 | v2_extractor_at_anchor |
gadievron/raptor | 4a510397258bda7fac55efdee938ce033c5b9274 | 7 | train | train | packages/llm_analysis/tests/test_llm_callbacks.py | test_callback_registered_after_init | assert | numeric_literal | 27 | import pytest
import time
import sys
import os
import litellm
from io import StringIO
from unittest.mock import patch, MagicMock
from pathlib import Path
sys.path.insert(0, str(Path(__file__).parent.parent.parent.parent))
from packages.llm_analysis.llm.client import LLMClient
from packages.llm_analysis.llm.config imp... | 0 | 4a510397258bda7fac55efdee938ce033c5b9274 | 7 | v2_extractor_at_anchor |
gadievron/raptor | 4a510397258bda7fac55efdee938ce033c5b9274 | 7 | train | train | packages/llm_analysis/tests/test_llm_callbacks.py | test_success_event_logs_correctly | assert | none_literal | 43 | import pytest
import time
import sys
import os
import litellm
from io import StringIO
from unittest.mock import patch, MagicMock
from pathlib import Path
sys.path.insert(0, str(Path(__file__).parent.parent.parent.parent))
from packages.llm_analysis.llm.client import LLMClient
from packages.llm_analysis.llm.config imp... | None | 4a510397258bda7fac55efdee938ce033c5b9274 | 7 | v2_extractor_at_anchor |
gadievron/raptor | 4a510397258bda7fac55efdee938ce033c5b9274 | 7 | train | train | packages/llm_analysis/tests/test_llm_callbacks.py | test_failure_event_sanitizes_api_keys | pytest.raises | variable | 27 | import pytest
import time
import sys
import os
import litellm
from io import StringIO
from unittest.mock import patch, MagicMock
from pathlib import Path
sys.path.insert(0, str(Path(__file__).parent.parent.parent.parent))
from packages.llm_analysis.llm.client import LLMClient
from packages.llm_analysis.llm.config imp... | Exception) | 4a510397258bda7fac55efdee938ce033c5b9274 | 7 | v2_extractor_at_anchor |
gadievron/raptor | 4a510397258bda7fac55efdee938ce033c5b9274 | 7 | train | train | packages/llm_analysis/tests/test_llm_callbacks.py | test_callback_singleton_pattern | assert | variable | 32 | import pytest
import time
import sys
import os
import litellm
from io import StringIO
from unittest.mock import patch, MagicMock
from pathlib import Path
sys.path.insert(0, str(Path(__file__).parent.parent.parent.parent))
from packages.llm_analysis.llm.client import LLMClient
from packages.llm_analysis.llm.config imp... | callback_count_2 | 4a510397258bda7fac55efdee938ce033c5b9274 | 7 | v2_extractor_at_anchor |
gadievron/raptor | 4a510397258bda7fac55efdee938ce033c5b9274 | 7 | train | train | packages/llm_analysis/tests/test_llm_callbacks.py | test_callback_registered_after_init | assert | string_literal | 31 | import pytest
import time
import sys
import os
import litellm
from io import StringIO
from unittest.mock import patch, MagicMock
from pathlib import Path
sys.path.insert(0, str(Path(__file__).parent.parent.parent.parent))
from packages.llm_analysis.llm.client import LLMClient
from packages.llm_analysis.llm.config imp... | "RaptorLLMLogger" | 4a510397258bda7fac55efdee938ce033c5b9274 | 7 | v2_extractor_at_anchor |
gadievron/raptor | 4a510397258bda7fac55efdee938ce033c5b9274 | 7 | train | train | packages/llm_analysis/tests/test_llm_callbacks.py | test_cache_hit_no_callback_invocation | assert | complex_expr | 55 | import pytest
import time
import sys
import os
import litellm
from io import StringIO
from unittest.mock import patch, MagicMock
from pathlib import Path
sys.path.insert(0, str(Path(__file__).parent.parent.parent.parent))
from packages.llm_analysis.llm.client import LLMClient
from packages.llm_analysis.llm.config imp... | response2.content | 4a510397258bda7fac55efdee938ce033c5b9274 | 7 | v2_extractor_at_anchor |
gadievron/raptor | 4a510397258bda7fac55efdee938ce033c5b9274 | 7 | train | train | packages/llm_analysis/tests/test_llm_callbacks_instructor.py | test_instructor_fires_callbacks | assert | none_literal | 51 | import pytest
import sys
import os
import litellm
from pathlib import Path
from pydantic import BaseModel
sys.path.insert(0, str(Path(__file__).parent.parent.parent.parent))
from packages.llm_analysis.llm.client import LLMClient
from packages.llm_analysis.llm.config import ModelConfig
class TestInstructorCompatibili... | None | 4a510397258bda7fac55efdee938ce033c5b9274 | 7 | v2_extractor_at_anchor |
gadievron/raptor | 4a510397258bda7fac55efdee938ce033c5b9274 | 7 | train | train | packages/llm_analysis/tests/test_llm_callbacks_instructor.py | test_instructor_fires_callbacks | assert | variable | 52 | import pytest
import sys
import os
import litellm
from pathlib import Path
from pydantic import BaseModel
sys.path.insert(0, str(Path(__file__).parent.parent.parent.parent))
from packages.llm_analysis.llm.client import LLMClient
from packages.llm_analysis.llm.config import ModelConfig
class TestInstructorCompatibili... | result_dict | 4a510397258bda7fac55efdee938ce033c5b9274 | 7 | v2_extractor_at_anchor |
gadievron/raptor | 4a510397258bda7fac55efdee938ce033c5b9274 | 7 | train | train | packages/llm_analysis/tests/test_llm_callbacks_providers.py | test_anthropic_callback | assert | none_literal | 47 | import pytest
import sys
import os
import litellm
from pathlib import Path
sys.path.insert(0, str(Path(__file__).parent.parent.parent.parent))
from packages.llm_analysis.llm.client import LLMClient
from packages.llm_analysis.llm.config import ModelConfig
class TestMultiProviderCallbacks:
def test_anthropic_call... | None | 4a510397258bda7fac55efdee938ce033c5b9274 | 7 | v2_extractor_at_anchor |
gadievron/raptor | 4a510397258bda7fac55efdee938ce033c5b9274 | 7 | train | train | packages/llm_analysis/tests/test_ollama_warning.py | test_no_warning_for_cloud_providers | assert | numeric_literal | 40 | import pytest
import sys
import os
import logging
from io import StringIO
from pathlib import Path
sys.path.insert(0, str(Path(__file__).parent.parent.parent.parent))
from packages.llm_analysis.llm.client import LLMClient
from packages.llm_analysis.llm.config import ModelConfig, LLMConfig
class TestOllamaWarning:
... | 0 | 4a510397258bda7fac55efdee938ce033c5b9274 | 7 | v2_extractor_at_anchor |
gadievron/raptor | 4a510397258bda7fac55efdee938ce033c5b9274 | 7 | train | train | packages/llm_analysis/tests/test_ollama_warning.py | test_warning_format | assert | string_literal | 50 | import pytest
import sys
import os
import logging
from io import StringIO
from pathlib import Path
sys.path.insert(0, str(Path(__file__).parent.parent.parent.parent))
from packages.llm_analysis.llm.client import LLMClient
from packages.llm_analysis.llm.config import ModelConfig, LLMConfig
class TestOllamaWarning:
... | "WARNING" | 4a510397258bda7fac55efdee938ce033c5b9274 | 7 | v2_extractor_at_anchor |
gadievron/raptor | 4a510397258bda7fac55efdee938ce033c5b9274 | 7 | train | train | packages/llm_analysis/tests/test_quota_detection.py | test_detects_http_429_error | assert | bool_literal | 10 | import pytest
from packages.llm_analysis.llm.client import _is_quota_error, _get_quota_guidance
class TestQuotaErrorDetection:
def test_detects_http_429_error(self):
"""Should detect HTTP 429 (Rate Limit) status code."""
error = Exception("HTTP error 429: Too Many Requests")
assert _is_qu... | True | 4a510397258bda7fac55efdee938ce033c5b9274 | 7 | v2_extractor_at_anchor |
gadievron/raptor | 4a510397258bda7fac55efdee938ce033c5b9274 | 7 | train | train | packages/llm_analysis/tests/test_quota_detection.py | test_non_quota_error_returns_false | assert | bool_literal | 18 | import pytest
from packages.llm_analysis.llm.client import _is_quota_error, _get_quota_guidance
class TestQuotaErrorDetection:
def test_non_quota_error_returns_false(self):
"""Should return False for non-quota errors."""
errors = [
Exception("Connection timeout"),
Exception... | False | 4a510397258bda7fac55efdee938ce033c5b9274 | 7 | v2_extractor_at_anchor |
gadievron/raptor | 4a510397258bda7fac55efdee938ce033c5b9274 | 7 | train | train | packages/llm_analysis/tests/test_quota_detection.py | test_gemini_guidance_by_provider | assert | variable | 11 | import pytest
from packages.llm_analysis.llm.client import _is_quota_error, _get_quota_guidance
class TestQuotaGuidance:
def test_gemini_guidance_by_provider(self):
"""Should return Gemini-specific detection message when provider is 'gemini'."""
guidance = _get_quota_guidance("gemini-2.5-pro", "ge... | guidance | 4a510397258bda7fac55efdee938ce033c5b9274 | 7 | v2_extractor_at_anchor |
gao-lab/GLUE | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | train | train | tests/models/test_base.py | test_base | pytest.raises | variable | 9 | import pytest
import torch
import scglue
def test_base():
model = scglue.models.Model()
with pytest.raises( | RuntimeError) | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | v2_extractor_at_anchor |
gao-lab/GLUE | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | train | train | tests/models/test_base.py | test_base | pytest.raises | variable | 12 | import pytest
import torch
import scglue
def test_base():
model = scglue.models.Model()
with pytest.raises(RuntimeError):
_ = model.trainer
model.compile()
with pytest.raises( | NotImplementedError) | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | v2_extractor_at_anchor |
gao-lab/GLUE | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | train | train | tests/models/test_data.py | test_parallel_dataloader | assert | numeric_literal | 14 | import numpy as np
import pytest
import scglue
import scglue.models.data
from ..fixtures import *
def test_parallel_dataloader():
pdl = scglue.models.data.ParallelDataLoader(range(3), range(5), cycle_flags=[False, False])
for i, _ in enumerate(pdl):
pass
assert i == | 2 | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | v2_extractor_at_anchor |
gao-lab/GLUE | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | train | train | tests/models/test_data.py | test_parallel_dataloader | assert | numeric_literal | 18 | import numpy as np
import pytest
import scglue
import scglue.models.data
from ..fixtures import *
def test_parallel_dataloader():
pdl = scglue.models.data.ParallelDataLoader(range(3), range(5), cycle_flags=[False, False])
for i, _ in enumerate(pdl):
pass
assert i == 2 # pylint: disable=undefined... | 4 | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | v2_extractor_at_anchor |
gao-lab/GLUE | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | train | train | tests/models/test_data.py | test_array_dataset | pytest.raises | variable | 14 | import numpy as np
import pytest
import scglue
import scglue.models.data
from ..fixtures import *
def test_array_dataset(rna, atac):
dataset = scglue.models.data.ArrayDataset(rna.X, atac.X)
assert dataset.size == max(dataset.sizes)
_ = dataset.random_split([0.6, 0.4])
with pytest.raises( | ValueError) | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | v2_extractor_at_anchor |
gao-lab/GLUE | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | train | train | tests/models/test_data.py | test_array_dataset | assert | func_call | 12 | import numpy as np
import pytest
import scglue
import scglue.models.data
from ..fixtures import *
def test_array_dataset(rna, atac):
dataset = scglue.models.data.ArrayDataset(rna.X, atac.X)
assert dataset.size == | max(dataset.sizes) | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | v2_extractor_at_anchor |
gao-lab/GLUE | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | train | train | tests/models/test_scclue.py | test_save_load | pytest.raises | variable | 35 | import warnings
import pytest
import scglue
from ..fixtures import *
from ..utils import cmp_arrays
@pytest.mark.parametrize("rna_prob", ["NB"])
@pytest.mark.parametrize("atac_prob", ["NB"])
@pytest.mark.parametrize("backed", [False, True])
def test_save_load(rna_pp, atac_pp, tmp_path, rna_prob, atac_prob, backed):... | ValueError) | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | v2_extractor_at_anchor |
gao-lab/GLUE | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | train | train | tests/models/test_scclue.py | test_save_load | pytest.raises | variable | 44 | import warnings
import pytest
import scglue
from ..fixtures import *
from ..utils import cmp_arrays
@pytest.mark.parametrize("rna_prob", ["NB"])
@pytest.mark.parametrize("atac_prob", ["NB"])
@pytest.mark.parametrize("backed", [False, True])
def test_save_load(rna_pp, atac_pp, tmp_path, rna_prob, atac_prob, backed):... | RuntimeError) | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | v2_extractor_at_anchor |
gao-lab/GLUE | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | train | train | tests/models/test_scglue.py | test_abnormal | pytest.raises | variable | 31 | import warnings
import pytest
import scglue
from ..fixtures import *
from ..utils import cmp_arrays
@pytest.mark.parametrize("model", ["IndSCGLUE", "SCGLUE", "PairedSCGLUE"])
def test_abnormal(rna_pp, atac_pp, prior, tmp_path, model):
if model == "SCGLUE":
ActiveModel = scglue.models.SCGLUEModel
el... | KeyError) | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | v2_extractor_at_anchor |
gao-lab/GLUE | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | train | train | tests/models/test_scglue.py | test_anndataset | pytest.raises | variable | 15 | import warnings
import pytest
import scglue
from ..fixtures import *
from ..utils import cmp_arrays
@pytest.mark.parametrize("use_uid", ["uid", None])
def test_anndataset(rna, atac, use_uid):
scglue.models.configure_dataset(rna, "NB", use_highly_variable=False, use_layer="arange", use_uid=use_uid)
scglue.mo... | ValueError) | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | v2_extractor_at_anchor |
gao-lab/GLUE | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | train | train | tests/models/test_scglue.py | test_save_load | pytest.raises | variable | 57 | import warnings
import pytest
import scglue
from ..fixtures import *
from ..utils import cmp_arrays
@pytest.mark.parametrize("rna_prob", ["NB"])
@pytest.mark.parametrize("atac_prob", ["NB", "ZINB"])
@pytest.mark.parametrize("model", ["IndSCGLUE", "SCGLUE", "PairedSCGLUE"])
@pytest.mark.parametrize("backed", [False,... | RuntimeError) | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | v2_extractor_at_anchor |
gao-lab/GLUE | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | train | train | tests/test_check.py | test_module_checker | pytest.raises | variable | 17 | import pytest
import scglue.check
def test_module_checker():
module_checker = scglue.check.ModuleChecker(
"numpy",
vmin=None, install_hint="You may install via..."
)
module_checker.check()
module_checker = scglue.check.ModuleChecker(
"numpy",
vmin="99.99.99", install_h... | RuntimeError) | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | v2_extractor_at_anchor |
gao-lab/GLUE | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | train | train | tests/test_data.py | test_aggregate_obs | assert | numeric_literal | 13 | import scglue
from .fixtures import *
from .utils import cmp_arrays
def test_aggregate_obs(rna_pp):
rna_agg = scglue.data.aggregate_obs(
rna_pp, by="ct", X_agg="sum",
obs_agg={"ct": "majority"},
obsm_agg={"X_pca": "mean"}
)
assert rna_agg.shape[0] == | 3 | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | v2_extractor_at_anchor |
gao-lab/GLUE | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | train | train | tests/test_data.py | test_get_gene_annotation | pytest.raises | variable | 8 | import scglue
from .fixtures import *
from .utils import cmp_arrays
def test_get_gene_annotation(rna, gtf_file):
with pytest.raises( | ValueError) | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | v2_extractor_at_anchor |
gao-lab/GLUE | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | train | train | tests/test_data.py | test_lsi | assert | collection | 9 | import scglue
from .fixtures import *
from .utils import cmp_arrays
def test_lsi(atac):
scglue.data.lsi(atac, n_components=2)
assert atac.obsm["X_lsi"].shape == | (atac.shape[0], 2) | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | v2_extractor_at_anchor |
gao-lab/GLUE | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | train | train | tests/test_genomics.py | test_bed | pytest.raises | variable | 23 | import pytest
import scglue
from .fixtures import *
from .utils import cmp_graphs
def test_bed(bed_file, fasta_file, fai_file):
bed = scglue.genomics.Bed.read_bed(bed_file)
bed.write_bed(bed_file)
assert bed.equals(scglue.genomics.Bed.read_bed(bed_file))
assert bed.equals(bed.expand(0, 0))
assert... | ValueError) | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | v2_extractor_at_anchor |
gao-lab/GLUE | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | train | train | tests/test_graph.py | test_collapse_multigraph | assert | numeric_literal | 30 | import networkx as nx
import scglue
from .fixtures import *
from .utils import cmp_graphs
def test_collapse_multigraph(composed_graph):
result = scglue.graph.collapse_multigraph(composed_graph)
result = scglue.graph.collapse_multigraph(
composed_graph, merge_fns={"dist": min, "weight": scglue.num.pro... | 0 | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | v2_extractor_at_anchor |
gao-lab/GLUE | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | train | train | tests/test_metrics.py | test_neighbor_conservation | assert | numeric_literal | 15 | import numpy as np
import pytest
import scglue.metrics
from .fixtures import *
def test_neighbor_conservation(rna_pp):
neighbor_conservation = scglue.metrics.neighbor_conservation(
rna_pp.obsm["X_pca"],
rna_pp.obsm["X_pca"],
rna_pp.obs["batch"].to_numpy().ravel()
)
assert neighbo... | 1 | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | v2_extractor_at_anchor |
gao-lab/GLUE | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | train | train | tests/test_metrics.py | test_foscttm | pytest.raises | variable | 21 | import numpy as np
import pytest
import scglue.metrics
from .fixtures import *
def test_foscttm(rna_pp, atac_pp):
foscttm_x, foscttm_y = scglue.metrics.foscttm(
rna_pp.obsm["X_pca"], rna_pp.obsm["X_pca"]
)
assert np.all(foscttm_x == 0)
assert np.all(foscttm_y == 0)
foscttm_x, foscttm_y = ... | ValueError) | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | v2_extractor_at_anchor |
gao-lab/GLUE | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | train | train | tests/test_metrics.py | test_foscttm | assert | func_call | 18 | import numpy as np
import pytest
import scglue.metrics
from .fixtures import *
def test_foscttm(rna_pp, atac_pp):
foscttm_x, foscttm_y = scglue.metrics.foscttm(
rna_pp.obsm["X_pca"], rna_pp.obsm["X_pca"]
)
assert np.all(foscttm_x == 0)
assert np.all(foscttm_y == 0)
foscttm_x, foscttm_y = ... | foscttm_x.mean() | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | v2_extractor_at_anchor |
gao-lab/GLUE | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | train | train | tests/test_metrics.py | test_foscttm | assert | func_call | 19 | import numpy as np
import pytest
import scglue.metrics
from .fixtures import *
def test_foscttm(rna_pp, atac_pp):
foscttm_x, foscttm_y = scglue.metrics.foscttm(
rna_pp.obsm["X_pca"], rna_pp.obsm["X_pca"]
)
assert np.all(foscttm_x == 0)
assert np.all(foscttm_y == 0)
foscttm_x, foscttm_y = ... | foscttm_y.mean() | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | v2_extractor_at_anchor |
gao-lab/GLUE | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | train | train | tests/test_metrics.py | test_graph_connectivity | assert | variable | 14 | import numpy as np
import pytest
import scglue.metrics
from .fixtures import *
def test_graph_connectivity(atac_pp):
graph_connectivity = scglue.metrics.graph_connectivity(
atac_pp.obsm["X_lsi"],
atac_pp.obs["batch"].to_numpy().ravel()
)
assert 0 <= | graph_connectivity | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | v2_extractor_at_anchor |
gao-lab/GLUE | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | train | train | tests/test_metrics.py | test_avg_silhouette_width | assert | variable | 14 | import numpy as np
import pytest
import scglue.metrics
from .fixtures import *
def test_avg_silhouette_width(rna_pp):
avg_silhouette_width = scglue.metrics.avg_silhouette_width(
rna_pp.obsm["X_pca"],
rna_pp.obs["ct"].to_numpy().ravel()
)
assert 0 <= | avg_silhouette_width | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | v2_extractor_at_anchor |
gao-lab/GLUE | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | train | train | tests/test_metrics.py | test_neighbor_conservation | assert | variable | 22 | import numpy as np
import pytest
import scglue.metrics
from .fixtures import *
def test_neighbor_conservation(rna_pp):
neighbor_conservation = scglue.metrics.neighbor_conservation(
rna_pp.obsm["X_pca"],
rna_pp.obsm["X_pca"],
rna_pp.obs["batch"].to_numpy().ravel()
)
assert neighbor... | neighbor_conservation | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | v2_extractor_at_anchor |
gao-lab/GLUE | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | train | train | tests/test_metrics.py | test_mean_average_precision | assert | variable | 14 | import numpy as np
import pytest
import scglue.metrics
from .fixtures import *
def test_mean_average_precision(rna_pp):
mean_average_precision = scglue.metrics.mean_average_precision(
rna_pp.obsm["X_pca"],
rna_pp.obs["ct"].to_numpy().ravel()
)
assert 0 <= | mean_average_precision | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | v2_extractor_at_anchor |
gao-lab/GLUE | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | train | train | tests/test_metrics.py | test_normalized_mutual_info | assert | variable | 14 | import numpy as np
import pytest
import scglue.metrics
from .fixtures import *
def test_normalized_mutual_info(rna_pp):
normalized_mutual_info = scglue.metrics.normalized_mutual_info(
rna_pp.obsm["X_pca"],
rna_pp.obs["ct"].to_numpy().ravel()
)
assert 0 <= | normalized_mutual_info | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | v2_extractor_at_anchor |
gao-lab/GLUE | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | train | train | tests/test_metrics.py | test_seurat_alignment_score | assert | variable | 14 | import numpy as np
import pytest
import scglue.metrics
from .fixtures import *
def test_seurat_alignment_score(atac_pp):
seurat_alignment_score = scglue.metrics.seurat_alignment_score(
atac_pp.obsm["X_lsi"],
atac_pp.obs["batch"].to_numpy().ravel()
)
assert 0 <= | seurat_alignment_score | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | v2_extractor_at_anchor |
gao-lab/GLUE | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | train | train | tests/test_metrics.py | test_avg_silhouette_width_batch | assert | variable | 15 | import numpy as np
import pytest
import scglue.metrics
from .fixtures import *
def test_avg_silhouette_width_batch(atac_pp):
avg_silhouette_width_batch = scglue.metrics.avg_silhouette_width_batch(
atac_pp.obsm["X_lsi"],
atac_pp.obs["ct"].to_numpy().ravel(),
atac_pp.obs["batch"].to_numpy()... | avg_silhouette_width_batch | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | v2_extractor_at_anchor |
gao-lab/GLUE | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | train | train | tests/test_num.py | test_sigmoid | assert | numeric_literal | 10 | import numpy as np
import pytest
import scglue
from .fixtures import *
def test_sigmoid():
assert scglue.num.sigmoid(0) == | 0.5 | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | v2_extractor_at_anchor |
gao-lab/GLUE | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | train | train | tests/test_num.py | test_col_var | pytest.raises | variable | 13 | import numpy as np
import pytest
import scglue
from .fixtures import *
def test_col_var(mat, spmat):
_ = scglue.num.col_var(mat)
_ = scglue.num.col_var(spmat)
_ = scglue.num.col_var(mat[:10, :2], spmat[:10, :][:, :2])
with pytest.raises( | ValueError) | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | v2_extractor_at_anchor |
gao-lab/GLUE | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | train | train | tests/test_num.py | test_sigmoid | assert | func_call | 11 | import numpy as np
import pytest
import scglue
from .fixtures import *
def test_sigmoid():
assert scglue.num.sigmoid(0) == 0.5
assert 0 < | scglue.num.sigmoid(-1) | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | v2_extractor_at_anchor |
gao-lab/GLUE | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | train | train | tests/test_utils.py | test_get_rs | assert | variable | 9 | import logging
import scglue
def test_get_rs():
rs1 = scglue.utils.get_rs(0)
rs2 = scglue.utils.get_rs(rs1)
assert rs1 is | rs2 | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | v2_extractor_at_anchor |
gao-lab/GLUE | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | train | train | tests/test_utils.py | test_log_manager | assert | variable | 18 | import logging
import scglue
def test_log_manager(tmp_path):
file1 = tmp_path / "log1.log"
scglue.log.log_file = file1
scglue.log.console_log_level = logging.WARNING
scglue.log.file_log_level = logging.INFO
logger1 = scglue.log.get_logger("logger1")
file2 = tmp_path / "log2.log"
scglue.lo... | logger2 | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | v2_extractor_at_anchor |
gao-lab/GLUE | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | train | train | tests/utils.py | cmp_graphs | assert | variable | 19 | import numpy as np
def cmp_arrays(a, b, squeeze=False):
a, b = np.asarray(a), np.asarray(b)
if squeeze:
a, b = a.squeeze(), b.squeeze()
assert np.array_equal(a, b)
def cmp_graphs(a, b):
set_a = set(
(e, tuple(sorted(p for p in a.get_edge_data(*e).items())))
for e in a.edges
... | set_b | caa3f9d0eeb4b35ca744e68b216027634387ae82 | 3 | v2_extractor_at_anchor |
gee-community/geetools | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | train | train | tests/test_Array.py | test_full_with_integers | assert | collection | 8 | import ee
class TestFull:
def test_full_with_integers(self):
full_array = ee.Array.geetools.full(3, 3, 1)
assert full_array.getInfo() == | [[1, 1, 1], [1, 1, 1], [1, 1, 1]] | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | v2_extractor_at_anchor |
gee-community/geetools | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | train | train | tests/test_Array.py | test_set_with_integers | assert | collection | 9 | import ee
class TestSet:
def test_set_with_integers(self):
array = ee.Array.geetools.full(3, 3, 1)
set_array = array.geetools.set(1, 1, 0)
assert set_array.getInfo() == | [[1, 1, 1], [1, 0, 1], [1, 1, 1]] | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | v2_extractor_at_anchor |
gee-community/geetools | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | train | train | tests/test_Array.py | test_full_with_floats | assert | collection | 8 | import ee
class TestFull:
def test_full_with_floats(self):
full_array = ee.Array.geetools.full(3.1, 3.1, 1.0)
assert full_array.getInfo() == | [ [1.0, 1.0, 1.0], [1.0, 1.0, 1.0], [1.0, 1.0, 1.0], ] | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | v2_extractor_at_anchor |
gee-community/geetools | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | train | train | tests/test_Array.py | test_set_with_floats | assert | collection | 9 | import ee
class TestSet:
def test_set_with_floats(self):
array = ee.Array.geetools.full(3.1, 3.1, 1.0)
set_array = array.geetools.set(1, 1, 0.0)
assert set_array.getInfo() == | [ [1.0, 1.0, 1.0], [1.0, 0.0, 1.0], [1.0, 1.0, 1.0], ] | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | v2_extractor_at_anchor |
gee-community/geetools | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | train | train | tests/test_Asset.py | test_st_size | assert | numeric_literal | 16 | import os
from unittest.mock import patch
import ee
import pytest
import geetools # noqa F401
EARTHENGINE_PROJECT = os.environ.get("EARTHENGINE_PROJECT")
class TestProperties:
def test_st_size(self, gee_test_folder):
gee_test_folder = ee.Asset(gee_test_folder)
assert (gee_test_folder / "folde... | 31 | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | v2_extractor_at_anchor |
gee-community/geetools | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | train | train | tests/test_Asset.py | test_lt | assert | bool_literal | 16 | import os
from unittest.mock import patch
import ee
import pytest
import geetools # noqa F401
EARTHENGINE_PROJECT = os.environ.get("EARTHENGINE_PROJECT")
class TestOperations:
def test_lt(self):
asset = ee.Asset("projects/bar/foo")
assert (asset < "projects/bar/foo/bar") is | True | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | v2_extractor_at_anchor |
gee-community/geetools | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | train | train | tests/test_ComputedObect.py | test_isinstance_with_string | assert | numeric_literal | 8 | import ee
import pytest
class TestIsinstance:
def test_isinstance_with_string(self):
assert ee.String("").isInstance(ee.String).getInfo() == | 1 | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | v2_extractor_at_anchor |
gee-community/geetools | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | train | train | tests/test_ComputedObect.py | test_open_not_correct_suffix | pytest.raises | variable | 8 | import ee
import pytest
class TestOpen:
def test_open_not_correct_suffix(self):
with pytest.raises( | ValueError) | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | v2_extractor_at_anchor |
gee-community/geetools | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | train | train | tests/test_Date.py | test_is_leap_1992 | assert | numeric_literal | 14 | from datetime import datetime as dt
from zoneinfo import ZoneInfo
import ee
import pytest
import geetools # noqa: F401
class TestIsLeap:
def test_is_leap_1992(self):
leap = ee.Date("1992-01-01").geetools.isLeap()
assert leap.getInfo() == | 1 | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | v2_extractor_at_anchor |
gee-community/geetools | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | train | train | tests/test_Date.py | test_is_leap_1900 | assert | numeric_literal | 14 | from datetime import datetime as dt
from zoneinfo import ZoneInfo
import ee
import pytest
import geetools # noqa: F401
class TestIsLeap:
def test_is_leap_1900(self):
leap = ee.Date("1900-01-01").geetools.isLeap()
assert leap.getInfo() == | 0 | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | v2_extractor_at_anchor |
gee-community/geetools | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | train | train | tests/test_Date.py | test_unit_since_epoch | assert | numeric_literal | 14 | from datetime import datetime as dt
from zoneinfo import ZoneInfo
import ee
import pytest
import geetools # noqa: F401
class TestGetUnitSinceEpoch:
def test_unit_since_epoch(self, date_instance):
unit = date_instance.geetools.getUnitSinceEpoch("year")
assert unit.getInfo() >= | 49 | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | v2_extractor_at_anchor |
gee-community/geetools | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | train | train | tests/test_Date.py | test_now | assert | none_literal | 14 | from datetime import datetime as dt
from zoneinfo import ZoneInfo
import ee
import pytest
import geetools # noqa: F401
class TestNow:
def test_now(self):
date = ee.Date.geetools.now()
assert date.getInfo() is not | None | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | v2_extractor_at_anchor |
gee-community/geetools | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | train | train | tests/test_Date.py | test_wrong_unit | pytest.raises | variable | 13 | from datetime import datetime as dt
from zoneinfo import ZoneInfo
import ee
import pytest
import geetools # noqa: F401
class TestGetUnitSinceEpoch:
def test_wrong_unit(self, date_instance):
with pytest.raises( | ValueError) | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | v2_extractor_at_anchor |
gee-community/geetools | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | train | train | tests/test_Date.py | test_from_epoch | assert | string_literal | 14 | from datetime import datetime as dt
from zoneinfo import ZoneInfo
import ee
import pytest
import geetools # noqa: F401
class TestFromEpoch:
def test_from_epoch(self):
date = ee.Date.geetools.fromEpoch(49, "year")
assert date.format("YYYY-MM-DD").getInfo() == | "2019-01-01" | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | v2_extractor_at_anchor |
gee-community/geetools | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | train | train | tests/test_Date.py | test_from_doy | assert | string_literal | 14 | from datetime import datetime as dt
from zoneinfo import ZoneInfo
import ee
import pytest
import geetools # noqa: F401
class TestFromDOY:
def test_from_doy(self):
date = ee.Date.geetools.fromDOY(1, 2020)
assert date.format("YYYY-MM-DD").getInfo() == | "2020-01-01" | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | v2_extractor_at_anchor |
gee-community/geetools | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | train | train | tests/test_Date.py | test_wrong_year | assert | string_literal | 15 | from datetime import datetime as dt
from zoneinfo import ZoneInfo
import ee
import pytest
import geetools # noqa: F401
class TestFromDOY:
def test_wrong_year(self):
# check GEE can use year < EPOCH
date = ee.Date.geetools.fromDOY(1, 3)
assert date.format("YYYY-MM-DD").getInfo() == | "0003-01-01" | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | v2_extractor_at_anchor |
gee-community/geetools | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | train | train | tests/test_Date.py | test_wrong_doy | assert | string_literal | 15 | from datetime import datetime as dt
from zoneinfo import ZoneInfo
import ee
import pytest
import geetools # noqa: F401
class TestFromDOY:
def test_wrong_doy(self):
# check that GEE can use > 365 doy
date = ee.Date.geetools.fromDOY(367, 2020)
assert date.format("YYYY-MM-DD").getInfo() =... | "2021-01-01" | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | v2_extractor_at_anchor |
gee-community/geetools | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | train | train | tests/test_Date.py | test_to_datetime_timezone | assert | func_call | 16 | from datetime import datetime as dt
from zoneinfo import ZoneInfo
import ee
import pytest
import geetools # noqa: F401
class TestToDatetime:
def test_to_datetime_timezone(self, date_instance):
tz = ZoneInfo("America/Buenos_Aires")
py_dt = date_instance.geetools.to_datetime(tz)
# Buenos ... | dt(2019, 12, 31, 21, tzinfo=tz) | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | v2_extractor_at_anchor |
gee-community/geetools | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | train | train | tests/test_Date.py | test_to_datetime | assert | func_call | 14 | from datetime import datetime as dt
from zoneinfo import ZoneInfo
import ee
import pytest
import geetools # noqa: F401
class TestToDatetime:
def test_to_datetime(self, date_instance):
py_dt = date_instance.geetools.to_datetime()
assert py_dt == | dt(2020, 1, 1, tzinfo=ZoneInfo("UTC")) | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | v2_extractor_at_anchor |
gee-community/geetools | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | train | train | tests/test_Date.py | test_to_datetime_str_timezone | assert | func_call | 16 | from datetime import datetime as dt
from zoneinfo import ZoneInfo
import ee
import pytest
import geetools # noqa: F401
class TestToDatetime:
def test_to_datetime_str_timezone(self, date_instance):
str_tz = "America/Buenos_Aires"
py_dt = date_instance.geetools.to_datetime(str_tz)
# Bueno... | dt(2019, 12, 31, 21, tzinfo=ZoneInfo(str_tz)) | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | v2_extractor_at_anchor |
gee-community/geetools | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | train | train | tests/test_DateRange.py | split_with_end_outside | assert | numeric_literal | 11 | import ee
import pytest
class TestSplit:
def split_with_end_outside(self, daterange_instance):
list = daterange_instance.geetools.split(2, "month")
first = ee.DateRange(list.get(0)).start()
last = ee.DateRange(list.get(-1)).end()
assert list.size().getInfo() == | 1 | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | v2_extractor_at_anchor |
gee-community/geetools | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | train | train | tests/test_DateRange.py | test_split | assert | numeric_literal | 11 | import ee
import pytest
class TestSplit:
def test_split(self, daterange_instance):
list = daterange_instance.geetools.split(1, "day")
first = ee.DateRange(list.get(0)).start()
last = ee.DateRange(list.get(-1)).end()
assert list.size().getInfo() == | 30 | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | v2_extractor_at_anchor |
gee-community/geetools | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | train | train | tests/test_DateRange.py | test_check_unit | pytest.raises | variable | 8 | import ee
import pytest
class TestCheckUnit:
def test_check_unit(self):
with pytest.raises( | ValueError) | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | v2_extractor_at_anchor |
gee-community/geetools | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | train | train | tests/test_DateRange.py | test_split | assert | string_literal | 12 | import ee
import pytest
class TestSplit:
def test_split(self, daterange_instance):
list = daterange_instance.geetools.split(1, "day")
first = ee.DateRange(list.get(0)).start()
last = ee.DateRange(list.get(-1)).end()
assert list.size().getInfo() == 30
assert first.format("Y... | "2020-01-01" | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | v2_extractor_at_anchor |
gee-community/geetools | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | train | train | tests/test_DateRange.py | test_split | assert | string_literal | 13 | import ee
import pytest
class TestSplit:
def test_split(self, daterange_instance):
list = daterange_instance.geetools.split(1, "day")
first = ee.DateRange(list.get(0)).start()
last = ee.DateRange(list.get(-1)).end()
assert list.size().getInfo() == 30
assert first.format("YY... | "2020-01-31" | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | v2_extractor_at_anchor |
gee-community/geetools | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | train | train | tests/test_Dictionary.py | test_getMany | assert | collection | 10 | import ee
import geetools # noqa: F401
class TestGetMany:
def test_getMany(self):
d = ee.Dictionary({"foo": 1, "bar": 2}).geetools.getMany(["foo"])
assert d.getInfo() == | [1] | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | v2_extractor_at_anchor |
gee-community/geetools | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | train | train | tests/test_Dictionary.py | test_from_pairs_with_list | assert | collection | 10 | import ee
import geetools # noqa: F401
class TestFromPairs:
def test_from_pairs_with_list(self):
d = ee.Dictionary.geetools.fromPairs([["foo", 1], ["bar", 2]])
assert d.getInfo() == | {"foo": 1, "bar": 2} | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | v2_extractor_at_anchor |
gee-community/geetools | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | train | train | tests/test_Dictionary.py | test_sort | assert | collection | 10 | import ee
import geetools # noqa: F401
class TestSort:
def test_sort(self):
d = ee.Dictionary({"foo": 1, "bar": 2}).geetools.sort()
assert d.getInfo() == | {"bar": 2, "foo": 1} | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | v2_extractor_at_anchor |
gee-community/geetools | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | train | train | tests/test_Export.py | test_toAsset | assert | numeric_literal | 24 | import ee
import pytest
from ee.cli.utils import wait_for_task
import geetools # noqa F401
class TestImageCollection:
@pytest.mark.skip(reason="The export task timeout when to many tests are run at the same time")
def test_toAsset(self, gee_test_folder):
task_list = ee.batch.Export.geetools.imagecol... | 2 | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | v2_extractor_at_anchor |
gee-community/geetools | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | train | train | tests/test_FeatureCollection.py | test_add_id | assert | numeric_literal | 15 | import io
import ee
import geopandas as gpd
import pytest
from matplotlib import pyplot as plt
import geetools # noqa: F401
class TestAddId:
def test_add_id(self, fc_instance):
fc = fc_instance.geetools.addId()
assert fc.first().get("id").getInfo() == | 1 | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | v2_extractor_at_anchor |
gee-community/geetools | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | train | train | tests/test_FeatureCollection.py | test_to_polygons | assert | numeric_literal | 17 | import io
import ee
import geopandas as gpd
import pytest
from matplotlib import pyplot as plt
import geetools # noqa: F401
class TestToPolygons:
def test_to_polygons(self, fc_instance, dataframe_regression):
fc = fc_instance.geetools.toPolygons()
gdf = gpd.GeoDataFrame.from_features(fc.getInfo... | 66 | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | v2_extractor_at_anchor |
gee-community/geetools | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | train | train | tests/test_FeatureCollection.py | test_error_from_geo_interface_ | pytest.raises | variable | 14 | import io
import ee
import geopandas as gpd
import pytest
from matplotlib import pyplot as plt
import geetools # noqa: F401
class TestFromGeoInterface:
def test_error_from_geo_interface_(self):
with pytest.raises( | ValueError) | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | v2_extractor_at_anchor |
gee-community/geetools | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | train | train | tests/test_FeatureCollection.py | test_to_image | assert | collection | 16 | import io
import ee
import geopandas as gpd
import pytest
from matplotlib import pyplot as plt
import geetools # noqa: F401
class TestToImage:
def test_to_image(self, fc_instance, vatican):
image = fc_instance.geetools.toImage()
values = image.reduceRegion(ee.Reducer.mean(), vatican, 1)
... | {"constant": 0} | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | v2_extractor_at_anchor |
gee-community/geetools | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | train | train | tests/test_FeatureCollection.py | test_to_image_with_color | assert | collection | 16 | import io
import ee
import geopandas as gpd
import pytest
from matplotlib import pyplot as plt
import geetools # noqa: F401
class TestToImage:
def test_to_image_with_color(self, fc_instance, vatican):
image = fc_instance.geetools.toImage(color="ADM0_CODE")
values = image.reduceRegion(ee.Reducer... | {"constant": 110} | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | v2_extractor_at_anchor |
gee-community/geetools | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | train | train | tests/test_Filter.py | test_dateRange_with_daterange | assert | numeric_literal | 9 | import ee
class TestDateRange:
def test_dateRange_with_daterange(self, l8_sr_raw):
filter = ee.Filter.geetools.dateRange(ee.DateRange("2018-01-01", "2019-01-01"))
filtered_col = l8_sr_raw.filter(filter)
assert filtered_col.size().getInfo() == | 165030 | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | v2_extractor_at_anchor |
gee-community/geetools | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | train | train | tests/test_Float.py | test_name | assert | string_literal | 8 | import ee
import pytest
class TestFloat:
def test_name(self):
assert ee.Float.__name__ == | "Float" | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | v2_extractor_at_anchor |
gee-community/geetools | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | train | train | tests/test_Float.py | test_init | pytest.raises | variable | 8 | import ee
import pytest
class TestFloat:
def test_init(self):
with pytest.raises( | NotImplementedError) | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | v2_extractor_at_anchor |
gee-community/geetools | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | train | train | tests/test_Geometry.py | test_keep_type | assert | string_literal | 7 | class TestKeepType:
def test_keep_type(self, geom_instance, data_regression):
geom = geom_instance.geetools.keepType("LineString")
geojson = geom.getInfo()
assert geojson["type"] == | "MultiLineString" | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | v2_extractor_at_anchor |
gee-community/geetools | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | train | train | tests/test_Geometry.py | test_keep_type | assert | collection | 8 | class TestKeepType:
def test_keep_type(self, geom_instance, data_regression):
geom = geom_instance.geetools.keepType("LineString")
geojson = geom.getInfo()
assert geojson["type"] == "MultiLineString"
assert geom.coordinates().getInfo() == | [[[0, 1], [0, 0]]] | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | v2_extractor_at_anchor |
gee-community/geetools | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | train | train | tests/test_Image.py | test_min_scale | assert | numeric_literal | 22 | import io
import zipfile
from io import BytesIO
from math import isclose
from pathlib import Path
from tempfile import TemporaryDirectory
from urllib.request import urlretrieve
import ee
import numpy as np
import pytest
from jsonschema import validate
from matplotlib import pyplot as plt
import geetools
class TestMi... | 10 | 14fdc796fc471e27c2ada9196f923a747077d011 | 81 | v2_extractor_at_anchor |
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