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def isOutput(parameter): """ Checks if parameter is output parameter. Returns True if parameter has key 'gisprompt.age' == 'new', False otherwise. """ try: if '@age' in parameter['gisprompt'].keys(): return (parameter['gisprompt']['@age'] == 'new') else: r...
def match(long, short): """ :param long: The DNA sequence to search. :param short: DNA sequence that we want to match. :return: Sub sequences that has the highest pairing rate. """ maximum = 0 homology = '' for i in range(len(long)-len(short)+1): # number of times that we have to...
def get_jira_tag(html_tag): """ Convert from HTML tags to JIRA markdown :param html_tag: :return: """ html_to_jira_tags = { 'ol': '#', 'ul': '*', 'li': '' } if html_tag not in html_to_jira_tags: return '' else: return html_to_jira_tags[html_tag...
def listify(item): """if item is not None and Not a list returns [item] else returns item""" if item is not None and not isinstance(item, (list, tuple)): item = [item] return item
def type_name(obj): """Fetch the type name of an object. This is a cosmetic shortcut. I find the normal method very ugly. :param any obj: The object you want the type name of :returns str: The type name """ return type(obj).__name__
def _sanitize_bin_name(name): """ Sanitize a package name so we can use it in starlark function names """ return name.replace("-", "_")
def profit(initial_capital, multiplier): """ Return profit :param initial_capital: :param multiplier: :return: """ r = initial_capital * (multiplier + 1.0) - initial_capital return r
def trigrid(tripts): """ Return a grid of 4 points inside given 3 points as a list. INPUT: - ``tripts`` -- A list of 3 lists of the form [x,y] where x and y are the Cartesian coordinates of a point. OUTPUT: A list of lists containing 4 points in following order: - 1. Barycenter of...
def rec_replace(in_str, old, new): """ Recursively replace a string in a string """ if old == new: return in_str if old not in in_str: return in_str return rec_replace(in_str.replace(old, new), old, new)
def deg2dec(value): """ encode given `value` as sexagesimal string :param float value: declination in decimal degrees :return str: sring in sexagesmial form """ value = round(value, 5) sign = 1 if value < 0: sign = -1 value = abs(value) dd, r1 = divmod(value, 1) ...
def isAppleItem(item_pl): """Returns True if the item to be installed or removed appears to be from Apple. If we are installing or removing any Apple items in a check/install cycle, we skip checking/installing Apple updates from an Apple Software Update server so we don't stomp on each other""" # ch...
def arg_return_greetings(name=""): """ This is greetings function with arguments and return greeting message :param name: :return: """ message = F"Hello {name}" return message
def stable_unique(seq): """unique a seq and keep its original order""" # See http://stackoverflow.com/questions/480214/how-do-you-remove-duplicates-from-a-list-in-python-whilst-preserving-order seen = set() seen_add = seen.add return [x for x in seq if not (x in seen or seen_add(x))]
def remove_suffix_ness(word): """ :param word: str of word to remove suffix from. :return: str of word with suffix removed & spelling adjusted. This function takes in a word and returns the base word with `ness` removed. """ # print(word[:-4]) word = word[:-4] if word[-1] == "i": ...
def make_entity_name(name): """Creates a valid PlantUML entity name from the given value.""" invalid_chars = "-=!#$%^&*[](){}/~'`<>:;" for char in invalid_chars: name = name.replace(char, "_") return name
def pulverizer(a, b): """return (g, x, y) such that a*x + b*y = g = gcd(a, b)""" x0, x1, y0, y1 = 0, 1, 1, 0 while a != 0: q, b, a = b // a, a, b % a y0, y1 = y1, y0 - q * y1 x0, x1 = x1, x0 - q * x1 return b, x0, y0
def do_sizes_match(imgs): """Returns if sizes match for all images in list.""" return len([*filter(lambda x: x.size != x.size[0], imgs)]) > 0
def get_digest_len(built_prims, prim_type): """ Calculates the maximum digest length for a given primitive type """ retval = 0 for _, p in built_prims: if p.prim_type == prim_type: retval = max(retval, p.digest_len) return retval
def hsv_to_rgb(h, s, v): """ Convert HSV to RGB (based on colorsys.py). Args: h (float): Hue 0 to 1. s (float): Saturation 0 to 1. v (float): Value 0 to 1 (Brightness). """ if s == 0.0: return v, v, v i = int(h * 6.0) f = (h * 6.0) - i p =...
def is_Float(s): """ returns True if the string s is a float number. s: str, int, float a string or a number """ try: float(s) return True except: return False
def find_kth(arr, k): """ Finds the kth largest element in the given array arr of integers, :param: arr unsorted array of integers :param: k, the order of value to return :return: kth largest element in array :rtype: int """ # sanity checks # if this is not a valid integer or float,...
def bb_intersection_over_union(boxA, boxB, if_return_areas=False): """ Taken from https://gist.github.com/meyerjo/dd3533edc97c81258898f60d8978eddc both boxes should be in format [x1, y1, x2, y2] """ # determine the (x, y)-coordinates of the intersection rectangle xA = max(boxA[0], boxB[0]) ...
def gammacorrectbyte(lumbyte: int, gamma: float) -> int: """Apply a gamma adjustment to a byte Args: lumbyte: int value gamma: float gamma adjust Returns: unsigned gamma adjusted byte """ return int(((lumbyte / 255) ** gamma) * 255)
def calcDictNative(points): """ SELECT e.euler1, e.euler2, pc.`refine_keep`, pc.`postRefine_keep` """ alldict = {} eulerdict = {} postrefinedict = {} for point in points: ### convert data #print point rad = float(point[0]) theta = float(point[1]) refinekeep = bool(point[2]) postrefinekeep = bool(point[...
def get_related_edges(nodes_list, graph): """ Returns all edges between nodes in a given list. All the nodes and edges are part of a graph which is given as a Graph object. :param nodes_list: A list of nodes :param graph: A Graph object :return: A list of edges """ node_id_list = map(l...
def double_layer_cover_reflection_coefficient(tau_1, rho_1, rho_2) -> float: """ The reflection coefficient Equation 8.15 :param float tau_1: the transmission coefficients of the first layer :param float rho_1: the reflection coefficients of the first layer :param float rho_2: the reflection coe...
def dict_to_table(dictionary): """Return a string table from the supplied dictionary. Note that the table should start on a new line and will insert a blank line at the start of itself and at the end. e.g. good: "hello\n" + dict_to_table({"a": "b"}) e.g. bad: "hello" + dict_to_tab...
def isInside(point_x, point_y, area_left, area_top, area_width, area_height): """ Returns `True` if the point of `point_x`, `point_y` is inside the area described, inclusive of `area_left` and `area_top`. >>> isInside(0, 0, 0, 0, 10, 10) True >>> isInside(10, 0, 0, 0, 10, 10) False """ ...
def byte_to_hex(byteStr): """ Convert byte sequences to a hex string. """ return ''.join(["%02X " % ord(x) for x in byteStr]).strip()
def get_provenance_record(caption: str, ancestors: list): """Create a provenance record describing the diagnostic data and plots.""" record = { 'caption': caption, 'domains': ['reg'], 'authors': [ 'kalverla_peter', 'smeets_stef', 'brunner_lukas...
def str_to_pi_list(inp): """ Parameters ---------- inp Input string Returns A list of pi expressions ------- """ lines = inp.strip().splitlines() lis = [] for line in lines: if line == "None": return [] lis.append(line) return l...
def fahrenheit_to_celsius(deg_F): """Convert degrees Fahrenheit to Celsius.""" return (5 / 9) * (deg_F - 32)
def delta( t1, tauv, taue, tauev, t0c, tzc, txc, dzi, dxi, dz2i, dx2i, vzero, vref, sgntz, sgntx, ): """Solve quadratic equation.""" ta = tauev + taue - tauv tb = tauev - taue + tauv apoly = dz2i + dx2i bpoly = 4.0 * (sgntx * txc * dxi + s...
def check_x_lim(x_lim, max_x): """ Checks the specified x_limits are valid and sets default if None. """ if x_lim is None: x_lim = (None, None) if len(x_lim) != 2: raise ValueError("The x_lim parameter must be a list of length 2, or None") try: if x_lim[0] is not None and...
def _stripped_codes(codes): """Return a tuple of stripped codes split by ','.""" return tuple([ code.strip() for code in codes.split(',') if code.strip() ])
def euklid_dist(coord1, coord2): """ Return euklidian distance between atoms coord1 and coord2. """ xd2 = (coord1[0]-coord2[0]) ** 2 yd2 = (coord1[1]-coord2[1]) ** 2 zd2 = (coord1[2]-coord2[2]) ** 2 return (xd2 + yd2 + zd2)**0.5
def dump_uint(n): """ Constant-width integer serialization :param writer: :param n: :param width: :return: """ buffer = [] while n: buffer.append(n & 0xff) n >>= 8 return buffer
def get_slurm_script_gpu(output_dir, command): """Returns contents of SLURM script for a gpu job.""" return """#!/bin/bash #SBATCH -N 1 #SBATCH --ntasks-per-node=1 #SBATCH --ntasks-per-socket=1 #SBATCH --gres=gpu:tesla_v100:1 #SBATCH --cpus-per-task=8 #SBATCH --mem=256000 #SBATCH --output={}/slurm_%j.out #SBATC...
def is_unlimited(rate_limit): """ Check whether a rate limit is None or unlimited (indicated by '-1'). :param rate_limit: the rate limit to check :return: bool """ return rate_limit is None or rate_limit == -1
def exgcd(a, b): """ Solve a*x + b*y = gcd(a, b) :param a: :param b: :return: gcd, x, y """ if a == 0: return b, 0, 1 g, y, x = exgcd(b % a, a) return g, x-(b//a)*y, y
def reorder_frameID(frame_dict): """ reorder the frames dictionary in a ascending manner :param frame_dict: a dict with key = frameid and value is a list of lists [object id, x, y, w, h] in the frame, dict :return: ordered dict by frameid """ keys_int = sorted([int(i) for i in frame_dict.keys()]...
def sumTo(n): """Sum from 0 to given numbers""" sum = int((n * (n + 1)) / 2) return sum
def strrep(text, old, new): """ Replaces all the occurrences of a substring into a new one Parameters ---------- text : str the string where to operate old : str the substring to be replaced new : str the new substring Returns ------- str The new...
def builder_support(builder): """Return True when builder is supported. Supported builders output in html format, but exclude `PickleHTMLBuilder` and `JSONHTMLBuilder`, which run into issues when serializing blog objects.""" if hasattr(builder, 'builder'): builder = builder.builder ...
def problem_2(number_str_1, number_str_2): """ Given two strings, return `True` if adding both those numbers in Python would result in an `int`. Otherwise if it would return something else, like a `float`, return `False`. For example if you got "4" and "3.5", you would return `...
def _get_element(lists, indices): """Gets element from nested lists of arbitrary depth.""" result = lists for i in indices: result = result[i] return result
def polygon_area(points_list, precision=100): """Calculate area of an arbitrary polygon using an algorithm from the web. Return the area of the polygon as a positive float. Arguments: points_list -- list of point tuples [(x0, y0), (x1, y1), (x2, y2), ...] (Unclosed polygons will be...
def extract_pose_sequence(pose_results, frame_idx, causal, seq_len, step=1): """Extract the target frame from 2D pose results, and pad the sequence to a fixed length. Args: pose_results (List[List[Dict]]): Multi-frame pose detection results stored in a nested list. Each element of the o...
def erase_none_val_from_list(list_values): """ Parameters ---------- list_values : list List with different values Returns ------- list_no_nones : list List with extract of list_values. No more None values included """ list_no_nones = [] for val in list_values...
def celery_config(celery_config): """Celery configuration (defaults to eager tasks). Scope: module This fixture provides the default Celery configuration (eager tasks, in-memory result backend and exception propagation). It can easily be overwritten in a specific test module: .. code-block:: ...
def conv_F2C(value): """Converts degree Fahrenheit to degree Celsius. Input parameter: scalar or array """ value_c = (value-32)*(5/9) if(hasattr(value_c, 'units')): value_c.attrs.update(units='degC') return(value_c)
def get_nonisomorphic_matroids(MSet): """ Return non-isomorphic members of the matroids in set ``MSet``. For direct access to ``get_nonisomorphic_matroids``, run:: sage: from sage.matroids.advanced import * INPUT: - ``MSet`` -- an iterable whose members are matroids. OUTPUT: A ...
def getPMUtiming(lines): """ Function to get the timing for the PMU recording. Parameters ---------- lines : list of str list with PMU file lines To improve speed, don't pass the first line, which contains the raw data. Returns ------- MPCUTime : list of two int ...
def _get_query_names_by_table_column_tuple(table_name, dwsupport_model): """ Helper function,returns Dict representing query names Dict is indexed by tuples of (table, column) names for fields which belong to the listed queries Keyword Parameters: source_id -- Sting, identifying the project...
def format_td(td): """ Nicely format a timedelta object as HH:MM:SS """ if td is None: return "unknown" if isinstance(td, str): return td seconds = int(td.total_seconds()) h = seconds // 3600 seconds = seconds % 3600 m = seconds // 60 seconds = seconds % 60 ...
def response_with_headers(headers): """ Content-Type: text/html Set-Cookie: user=gua """ header = 'HTTP/1.1 210 VERY OK\r\n' header += ''.join(['{}: {}\r\n'.format(k, v) for k, v in headers.items()]) return header
def sex_to_dec(s): """Convert sexigisimal-formatted string/integer to a decimal degree value.""" s = format(int(s), '07d') degree, arcmin, arcsec = s[:3], s[3:5], s[5:] return float(degree) + float(arcmin) / 60 + float(arcsec) / 3600
def API_package(API): """ Returns the package of API """ return API.split('->')[0]
def split_data(iterable, pred): """ Split data from ``iterable`` into two lists. Each element is passed to function ``pred``; elements for which ``pred`` returns True are put into ``yes`` list, other elements are put into ``no`` list. >>> split_data(["foo", "Bar", "Spam", "egg"], lambda t: t.is...
def rate2height(rain_flow_rate, duration): """ convert the rain flow rate to the height of rainfall in [mm] if 2 array-like parameters are give, a element-wise calculation will be made. So the length of the array must be the same. Args: rain_flow_rate (float | np.ndarray | pd.Series): in [l...
def sorted_keys(grouped_events): """Sort events by thread names""" keys = list(grouped_events.keys()) keys = sorted(keys, key=lambda s: s.split('|')[-1]) return list(reversed(keys))
def remove_spaces(s): """variable value is used locally """ value = s if value is None: return None if type(s) is not str: raise TypeError("you messed up") if value == "": return "" if value[0] != " ": return value[0] + remove_spaces(value[1:]) else: ...
def generate_freenas_volume_name(name, iqn_prefix): """Create FREENAS volume / iscsitarget name from Cinder name.""" backend_volume = 'volume-' + name.split('-')[1] backend_target = 'target-' + name.split('-')[1] backend_iqn = iqn_prefix + backend_target return {'name': backend_volume, 'target': bac...
def parse_tuple(tuple_string): """ strip any whitespace then outter characters. """ return tuple_string.strip().strip("\"[]")
def part1(depths): """ Count the number of times a depth measurement increases from the previous measurement How many measurements are larger than the previous measurement? """ depth_increases = 0 previous_depth = depths[0] for depth in depths: if depth > previous_depth: ...
def best_and_worst_hour(percentages): """ Args: percentages: output of compute_percentage Return: list of strings, the first element should be the best hour, the second (and last) element should be the worst hour. Hour are represented by string with format %H:%M e.g. ["18:00", "20:00"] ...
def str_to_hex(value: str) -> str: """Convert a string to a variable-length ASCII hex string.""" if not isinstance(value, str): raise ValueError(f"Invalid value: {value}, is not a string") return "".join(f"{ord(x):02X}" for x in value)
def weightSlice (S1, S2, f): """Calculates the interpolated result intermediate between two slices: result = (1.-f)*S1 + f*S2""" ns = len (S1) rt = [] for i in range (0, ns): if S1[i][0] < 0 or S2[i][0] < 0: rt.append ((-32767.,-32767.,-32767.)) else: r0 ...
def get_drop_type(group_name): """ A function to map devlink trap group names into unified Mellanox WJH drop types. """ return group_name.split("_")[0]
def getXOutside(y): """ Funcion para generar una parabola con el embone hacia la izquierda < :param y: valor de y :return: valor de x """ return 5*(y**2) - 5*y + 1
def is_maple_invoke_dync_bp_plt_disabled(buf): """ determine where Maple breakpoint plt disable or not params: buf: a string output of m_util.gdb_exec_to_str("info b") """ match_pattern = "<maple::InvokeInterpretMethod(maple::DynMFunction&)@plt>" buf = buf.split('\n') for ...
def needs_escaping(text: str) -> bool: """Check whether the ``text`` contains a character that needs escaping.""" for character in text: if character == "\a": return True elif character == "\b": return True elif character == "\f": return True e...
def triangleArea(ax, ay, bx, by, cx, cy): """Returns the area of a triangle given its 3 vertices in cartesian coordinates. """ # Formula found in: # http://www.mathopenref.com/coordtrianglearea.html return abs(ax * (by - cy) + bx * (cy - ay) + cx * (ay - by)) / 2
def get_line_column(data, line, column, position): """Returns the line and column of the given position in the string. Column is 1-based, that means, that the first character in a line has column equal to 1. A line with n character also has a n+1 column, which sits just before the newline. Args: ...
def _is_noop_report(report): """ Takes report and checks for needed fields :param report: list :rtype: bool """ try: return 'noop' in report['summary']['events'] except (KeyError, AttributeError, TypeError): return False
def format_string(string: str) -> str: """Replace specific unicode characters with ASCII ones. Args: string: Unicode string. Returns: ASCII string. """ string \ .replace("\u2013", "-") \ .replace("\u00a0", " ") \ .replace("\u2018", "'") \ .replace("\u2...
def find_matrix(document): """ Find **matrix** in document. The spline syntax allows following definitions: - **'matrix'** - ordered execution of each pipeline (short form) - **'matrix(ordered)'** - ordered execution of each pipeline (more readable form) - **'matrix(parallel)'** - ...
def calcPositions(M=1, a=1, e=0, p=0.5): """ Given total mass of system M, semimajor axis a, and percentage of total mass contained in primary star p, calculate positions of binary components keep COM at origin (ex: If 1Msol system and MPri = Msec = 0.5 -> M =1 -> p = 0.5) Assume stars start a perih...
def _format_app_object_string(app_objects): """Format app object string to store in test case.""" app_string = '' print("app_objects==============", app_objects) for key in app_objects: print("6666666666666666666666666", key) app_string = app_string + " ' " + key + " ' :" + app_objects[k...
def num_from_str(s): """Return a number from a string.""" try: return int(s) except ValueError: try: return float(s) except ValueError: raise ValueError( 'Can not convert the string "' + s + '" into a numeric value.' )
def drop_prefix(s, start): """Remove prefix `start` from sting `s`. Raises a :py:exc:`ValueError` if `s` didn't start with `start`.""" l = len(start) if s[:l] != start: raise ValueError('string does not start with expected value') return s[l:]
def smi_spliter(smi): """ Tokenize a SMILES molecule or reaction """ import re pattern = "(\[[^\]]+]|Br?|Cl?|N|O|S|P|F|I|b|c|n|o|s|p|\(|\)|\.|=|#|-|\+|\\\\|\/|:|~|@|\?|>|\*|\$|\%[0-9]{2}|[0-9])" regex = re.compile(pattern) tokens = [token for token in regex.findall(smi)] assert smi == ''...
def _limits(band): """ Returns initialisation wavelength and termination wavelength """ limits = {'g':(3990.0, 5440.0), 'r':(5440.0, 6960.0), 'r':(5440.0, 6960.0), 'i':(6960.0, 8500.0), 'z':(8500.0, 9320.0), 'y':(9320.0, 10760.0)} return limits[band]
def update_balance(iteration_balance, contribution, current_year_tuple): """ Takes in a single year's data during a single simulation and updates the balance. """ STOCK_RATE = 0 BOND_RATE = 1 STOCK_PCT = 2 iteration_balance = iteration_balance + contribution stock_balance = iteration_balance * c...
def selection_sort(marks): """Function to return a sorted list using the selection sort algorithm.""" for i in range(len(marks)): min = i for j in range(i+1, len(marks)): if marks[min] > marks[j]: min = j marks[i], marks[min] = marks[min], marks[i] retur...
def get_formatted_string(text, width, formatted=True): """Return text with trailing spaces.""" return " " + text + " " + (" " * (width - len(text))) if formatted else text
def get_root_name(fp): """Get the root name of a Python simulation. Extracts both the file path and the root name of the simulation. Parameters ---------- fp: str The directory path to a Python .pf file Returns ------- root: str The root name of the Python simulation ...
def update_Q(Qsa, Qsa_next, reward, alpha = 0.01, gamma = 0.9): """ updates the action-value function estimate using the most recent time step """ return Qsa + (alpha * (reward + (gamma * Qsa_next) - Qsa))
def nonify_string(string): """Return stripped string unless string is empty string, then return None. """ if string is None: return None string = str(string).strip() if len(string) == 0: return None return string
def calc_var_indices(input_vars, affected_vars): """Calculate indices of `affected_vars` in `input_vars`""" if affected_vars is None: return None return [ input_vars.index(var) for var in affected_vars ]
def two_strings(s1: str, s2: str) -> str: """ >>> two_strings("hello", "world") 'YES' >>> two_strings("hi", "world") 'NO' """ intersection = {*s1} & {*s2} return "YES" if intersection else "NO"
def rec_pts(rec, yds, tds): """ multi line strings in python are between three double quotes it's not required, but the convention is to put what the fn does in one of these multi line strings (called "docstring") right away in function this function takes number of recieving: yards, receptions and to...
def pretty_time_delta(seconds: int) -> str: """Format seconds timedelta to days, hours, minutes, seconds :param seconds: Seconds representing a timedelta :return: Formatted timedelta :Example: >>> pretty_time_delta(3601) '1h0m1s' >>> pretty_time_delta(-3601) '-1h0m1s' """ sign_...
def clean_query_string(string: str): """ Cleans string of ' 's and 's """ string.replace(' ', '%20') string.replace(',', '') return string
def render_pep440_pre(pieces): """TAG[.post2.devRUN_NUMBER] -- No -dirty. Exceptions: 1: no tags. 0.post2.devRUN_NUMBER """ if pieces["closest-tag"]: rendered = pieces["closest-tag"] # this needs to stay distance, run_number is always non-zero if pieces["distance"]: ...
def _strip_empty(d): """Strips entries of dict with no value, but allow zero.""" return { k: v for k, v in d.items() if v or (type(v) == int and v == 0) or (type(v) == str and v == "") }
def id(obj): # pylint: disable=redefined-builtin,invalid-name """Return ``id`` key of dict.""" return obj['__id']
def remap(obj, mapping): """ Helper method to remap entries in a list or keys in a dictionary based on an input map, used to translate symbols to properties and vice-versa Args: obj ([] or {} or set) a list of properties or property-keyed dictionary to be remapped using symbols....
def removeFromStart(text, toRemove, ignoreCase=None): """returns the text with "toRemove" stripped from the start if it matches >>> removeFromStart('abcd', 'a') u'bcd' >>> removeFromStart('abcd', 'not') u'abcd' working of ignoreCase: >>> removeFromStart('ABCD', 'a') u'ABCD' >>> removeFromStart('ABCD', ...
def dict_to_vega_dataset(data_dict): """ Convert a dictionary of values, such as that produced by COBRApy, into a Vega dataset (array of data elements) Args: data_dict (:obj:`dict`): dictionary that maps the labels of predicted variables to their predicted values Returns: :...