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def get_manual_finding_report_detail(manual_finding_reports): """ Iterate over manual finding report detail from response. :param manual_finding_reports: manual finding report detail from the response :return: List of manual finding report elements. """ return [{ 'ID': manual_finding_re...
def find_root_domain(soa): """ It is nessicary to know which domain is at the top of a zone. This function returns that domain. :param soa: A zone's :class:`SOA` object. :type soa: :class:`SOA` The following code is an example of how to call this function using a Domain as ``domain``. ...
def ints(int_list): """coerce a list of strings that represent integers into a list of integers""" return [ int(number) for number in int_list ]
def jaro_similarity(s1, s2): """ Computes the Jaro similarity between 2 sequences from: Matthew A. Jaro (1989). Advances in record linkage methodology as applied to the 1985 census of Tampa Florida. Journal of the American Statistical Association. 84 (406): 414-20. The Jaro distance...
def merge_nodes(a, b): """Recursively and non-destructively merges two nodes. Returns the newly created node. """ if a is None: return b if b is None: return a if a[0] > b[0]: a, b = b, a return a[0], merge_nodes(b, a[2]), a[1]
def reverse_loop(value): """Reverse string using a loop.""" result = "" for char in value: result = char + result return result
def perm(n, k): """Return P(n, k), the number of permutations of length k drawn from n choices. """ result = 1 assert k > 0 while k: result *= n n -= 1 k -= 1 return result
def checklen(astring): """ (str) -> Boolean Returns true if length of astring is at least 5 characters long, else False >>> checklen('', 1) False >>> checklen('four', 5) False >>> checklen('check', 5) True >>> checklen('check6', 6) True """ return len(astring) >= 5
def dummy_address_check( address ): """ Determines if values contain dummy addresses Args: address: Dictionary, list, or string containing addresses Returns: True if any of the data contains a dummy address; False otherwise """ dummy_addresses = [ "", "0.0.0.0", "::" ] if...
def process_builder_convert(data, test_name): """Converts 'test_name' to run on Swarming in 'data'. Returns True if 'test_name' was found. """ result = False for test in data['gtest_tests']: if test['test'] != test_name: continue test.setdefault('swarming', {}) if not test['swarming'].get('...
def hosoya(height, width): """ Calculates the hosoya triangle height -- height of the triangle """ if (width == 0) and (height in (0,1)): return 1 if (width == 1) and (height in (1,2)): return 1 if height > width: return hosoya(height - 1, width) + hosoya(height - 2, wid...
def get_domains(resolution, frequency, variable_fixed, no_frequencies): """Get the domains for the arguments provided. Args: resolution (int): Resolution frequency (str): Frequency variable_fixed (bool): Is the variable fixed? no_frequencies (bool): True if no frequencies were p...
def filter_keyphrases_brat(raw_ann): """Receive raw content in brat format and return keyphrases""" filter_keyphrases = map(lambda t: t.split("\t"), filter(lambda t: t[:1] == "T", raw_ann.split("\n"))) keyphrases = {} for keyphrase in filter...
def formatter(n): """formatter for venn diagram, so it can be easily turned off.""" #if you want it to be there return f"{n:.02f}"
def ctext(text, colour="green"): """Colour some terminal output""" # colours c = { "off": "\033[0m", # High Intensity "black": "\033[0;90m", "bl": "\033[0;90m", "red": "\033[0;91m", "r": "\033[0;91m", "green": "\033[0;92m", "g": "\033[0;92m",...
def deleteFirstRow(array): """Deletes the first row of a 2D array. It returns a copy of the new array""" array = array[1::] return array
def user_name_for(name): """ Returns a "user-friendly" name for a specified trait. """ name = name.replace('_', ' ') name = name[:1].upper() + name[1:] result = '' last_lower = 0 for c in name: if c.isupper() and last_lower: result += ' ' last_lower = c.islower() ...
def _verify_type(val, default, the_type, name, instance): """ Validate that the input is an instance of the provided type. Parameters ---------- val The prospective value. default : None|float The default value. the_type : Type The desired type for the value. nam...
def pointInPolygon(pt, poly, bbox=None): """Returns `True` if the point is inside the polygon. If `bbox` is passed in (as ``(x0,y0,x1,y1)``), that's used for a quick check first. Main code adapted from http://www.ecse.rpi.edu/Homepages/wrf/Research/Short_Notes/pnpoly.html """ x, y = pt if bbox: ...
def deleteRules(parentRule,ruleName): """ Function to fetch all delete rules matching a ruleName Parameters ---------- ruleName : <List> Default parent rule represented as a list Returns ------- parentRule : Updated Rule tree """ if parentRule[0]['name'] == ruleName: ...
def get_row_col(num_pic: int): """ get figure row and column number """ sqr = num_pic ** 0.5 row = round(sqr) col = row + 1 if sqr - row > 0 else row return row, col
def safe_division_d(number, divisor, **kwargs): """ safe_division_d :param number: :param divisor: :param kwargs: :return: """ # ignore_overflow = kwargs.pop('ignore_overflow', False) # ignore_zero_div = kwargs.pop('ignore_zero_division', False) if kwargs: raise TypeError...
def _parse_ref_dict(reference_dict, strict=True): """Parse the referenced dict into a tuple (TYPE, ID). The ``strict`` parameter controls if the number of keys in the reference dict is checked strictly or not. """ keys = list(reference_dict.keys()) if strict and len(keys) != 1: raise V...
def clean_texmath(txt): """ clean tex math string, preserving control sequences (incluing \n, so also '\nu') inside $ $, while allowing \n and \t to be meaningful in the text string """ s = "%s " % txt out = [] i = 0 while i < len(s)-1: if s[i] == '\\' and s[i+1] in ('n', 't'...
def collect_all_methods(cls, method_name): """Return list of all `method_name` methods for cls and its superclass chain. List is in MRO order, with no duplicates. Methods are unbound. (This is used to simplify mixins and subclasses that contribute to a method set, without requiring superclass chaining...
def cobs_encode(data): """COBS-Encode bytes. :param data: input bytes :return: cobs-encoded bytearray """ out = bytearray(len(data) + 1 + (len(data) // 254)) ci = ri = 0 c = wi = 1 while ri < len(data): if not data[ri]: out[ci] = c c = 1 ci = ...
def _stats_source(year): """Returns the path to the stats source file of the given year.""" return f'stats/stats.{year}.txt'
def replace_in_list(my_list, idx, element): """ Replaces an element in a list at given index """ list_len = len(my_list) if list_len <= idx or idx < 0: return (my_list) my_list[idx] = element return (my_list)
def rake_to_mech(rake): """ Convert rake to mechanism. Args: rake (float): Rake angle in degrees. Returns: str: Mechanism. """ mech = 'ALL' if rake is not None: if (rake >= -180 and rake <= -150) or \ (rake >= -30 and rake <= 30) or \ (rake >= ...
def sub_binary_search(sorted_array, test_value, low, high): """ run through sorted_array and look for test_value. if test_value is in sorted_array, return index for test_value in sorted_array. If test_value is not in sorted_array, return -1 """ if low > high: False else: mid = (l...
def fisbHexErrsToStr(hexErrs): """ Given an list containing error entries for each FIS-B block, return a string representing the errors. This will appear as a comment in either the result string, or the failed error message. Args: hexErrs (list): List of 6 items, one for each FIS-B block. Each entry ...
def remove_comment(line, marker="##"): """Return the given line, without the part which follows the comment marker ## (and without the marker itself).""" i = line.find(marker) if i < 0: return line else: return line[:i]
def config_from_defaults(struct: tuple) -> dict: """Return dict from defaults.""" return {x: y for x, _, y in struct}
def getOverlapSetSim(concepts_1: set, concepts_2: set): """ Returns Overlap Set Similarity for the given concept sets """ intersection = len(concepts_1.intersection(concepts_2)) return intersection/min(len(concepts_1),len(concepts_2))
def time_convert(input_time): """ Convert input time from sec to MM,SS format. :param input_time: input time in sec :type input_time: float :return: converted time as str """ sec = float(input_time) _days, sec = divmod(sec, 24 * 3600) _hours, sec = divmod(sec, 3600) minutes, sec...
def keep_aa(attentions): """ Last minute change: transfer over the network is very slow. Need to drop keys from the JSON to make rendering faster """ aa = attentions['aa'] out = {'aa': aa} return out
def welcome(location): """Takes the input string welcome and returns a string of the form 'Welcome to the location' """ return "Welcome to the " + location
def package_name(package): # type: (str) -> str """ Returns the package name of the given module name """ if not package: return "" lastdot = package.rfind(".") if lastdot == -1: return package return package[:lastdot]
def concatenate_title_and_text(title, text): """Concatenates title and content of an article in the same string. The two parts are separated by a blank space. :param title: The tile of an article :type title: str :param text: The text content of an article :type text: str :return: The strin...
def _format_kwargs(kwargs): """Returns a dictionary as key value pairs to be used in tags Usage: >>> _format_kwargs({a:1, b:"2"}) a="1" b="2" """ element_as_str = [] for key, value in kwargs.items(): element_as_str.append('{}="{}"'.format(key, value)) return ' '...
def __makenumber(value): """ Helper function to change the poorly formatted numbers to floats Examples: > value is an integer / float data type -> float type returned > value = '1,000', then the float value is 1000 > value = '1 000 000.00' then the float value is 1000000 ...
def get_content_length(environ): """Returns the content length from the WSGI environment as integer. If it's not available or chunked transfer encoding is used, ``None`` is returned. .. versionadded:: 0.9 :param environ: the WSGI environ to fetch the content length from. """ if environ.get...
def get_prop(obj, prop, mytype='str'): """Get a property of a dict, for example device['uptime'], and handle None-values.""" if mytype == 'str': if prop in obj: if obj[prop] is not None: return obj[prop].encode('utf-8') return '' else: if prop in obj: ...
def closeEnough(tolerance, length, string): """ tolerance: the tolerance of the string length length: the target length string: the string to evaluate """ if(abs(len(string) - length) <= tolerance): return True else: return False
def _requires_dist_to_pip_requirement(requires_dist): """Parse "Foo (v); python_version == '2.x'" from Requires-Dist Returns pip-style appropriate for requirements.txt. """ env_mark = '' if ';' in requires_dist: name_version, env_mark = requires_dist.split(';', 1) else: name_ver...
def binary_search(start, end, intervals): """Performs a binary search""" start_search = 0 end_search = len(intervals) while start_search < (end_search - 1): mid = start_search + (end_search - start_search) // 2 (interval_start, interval_end) = intervals[mid] if interval_end <= s...
def enum_name(name): """Shorten an enumeration name.""" assert name.startswith('GL_') return name[3:]
def _replace_oov(original_vocab, line): """Replace out-of-vocab words with "<UNK>". This maintains compatibility with published results. Args: original_vocab: a set of strings (The standard vocabulary for the dataset) line: a unicode string - a space-delimited sequence of words. Returns:...
def speed_func(t_n): """ Returns the normalised velocity U(t)/U0. """ return min(1,t_n)
def return_min(list_of_dims): """ Returns the dimensions that produce the minimum area. In the event of a tie, will return the first match. :param list_of_dims: A list of dimensions. :return: The dimensions with the minimum area. """ return min(list_of_dims, key=lambda dim: dim[...
def html_decode(s): """ Returns the ASCII decoded version of the given HTML string. This does NOT remove normal HTML tags like <p>. """ htmlCodes = ( ("'", '&#39;'), ('"', '&quot;'), ('>', '&gt;'), ('<', '&lt;'), ('&', '&amp;') ) fo...
def _normalize_encoding(encoding): """returns normalized name for <encoding> see dist/src/Parser/tokenizer.c 'get_normal_name()' for implementation details / reference NOTE: for now, parser.suite() raises a MemoryError when a bad encoding is used. (SF bug #979739) """ if encoding is ...
def _true(*args): """ Default rerun filter function that always returns True. """ # pylint:disable=unused-argument return True
def get_calmag(inimag, distance, ebv_val, magext_val): """ Apply the absorption and distance modulus color = colsub * 3.07 * EBV inimag -- magnitude from star star[chip[FILTER] (it should be = star[chip[BAND]] distance -- Distance Modulus used to calculate the calibrated magnitude ebv_va...
def detokenize_text(src): """ Join all tokens corresponding to single characters for creating the resulting text. This function is reverse for the function `tokenize_text`. :param src: source token list. :return: the resulting text. """ new_text = u'' for cur_token in src.split(): ...
def _is_no_rec_name(info_name): """ helper method to see if we should not provide any recommendation """ if info_name == "last_boot_time": return True
def prod(x): """ Computes the product of the elements of an iterable :param x: iterable :type x: iterable :return: product of the elements of x """ ret = 1 for item in x: ret = item * ret return ret
def temporal_filter(start_date, end_date=None): """TemporalFilter data model. Parameters ---------- start_date : str ISO 8601 formatted date. end_date : str, optional ISO 8601 formatted date. Returns ------- temporal_filter : dict TemporalFilter data model a...
def inflate_dict(dct, sep=".", deep=-1): """Inflates a flattened dict. Will look in simple dict of string key with string values to create a dict containing sub dicts as values. Samples are better than explanation: >>> from pprint import pprint as pp >>> pp(inflate_dict({'a.x': 3, 'a....
def config_shim(args): """Make new argument parsing method backwards compatible.""" if len(args) == 2 and args[1][0] != '-': return ['--config-file', args[1]]
def unpad(string): """ From: https://github.com/CharlesBlonde/libpurecoollink Copyright 2017 Charles Blonde Licensed under the Apache License Un pad string.""" return string[:-ord(string[len(string) - 1:])]
def pydiff(text1, text2, text1_name='text1', text2_name='text2', prefix_diff_files='tmp_diff', n=3): """ Use Python's ``difflib`` module to compute the difference between strings `text1` and `text2`. Produce text and html diff in files with `prefix_diff_files` as prefix. The `text1_name` ...
def str2tuple(s, sep=',', converter=None, *, maxsplit=-1): """Convert a string to a tuple. If ``converter`` is given and not ``None``, it must be a callable that takes a string parameter and returns an object of the required type, or else a tuple with string elements will be returned. >>> str2tupl...
def downcase(string): """Returns a copy of `string` with all the alphabetic characters converted to lowercase. :param string: string to downcase. """ return string.lower()
def minmax(min_value, value, max_value): """ Restrict value to [min_value; max_value] >>> minmax(-2, -3, 10) -2 >>> minmax(-2, 27, 10) 10 >>> minmax(-2, 0, 10) 0 """ return min(max(min_value, value), max_value)
def makeSafeString( someString:str ) -> str: """ Replaces potentially unsafe characters in a string to make it safe for display. """ #return someString.replace('&','&amp;').replace('<','&lt;').replace('>','&gt;') return someString.replace('<','_LT_').replace('>','_GT_')
def M_TO_N(m, n, e): """ match from m to n occurences of e :param: - `m`: the minimum required number of matches - `n`: the maximum number of matches - `e`: the expression to match """ return "{e}{{{m},{n}}}".format(m=m, n=n, e=e)
def _convert_obj_ids_to_strings(data): """Convert ObjectIds to hexadecimal strings. Takes a dictionary or a list of dictionaries of MongoDB BSON documents. Transforms their ObjectIds into strings so the documents are JSON serializable and the doc ids are easily accessed. """ if isinstance(data,...
def flatten_meal_item(meal_item): """ Input: <meal_items> is in the form: [ [category,title,extra], ... ] Output: dictionaries, each one containing a list of items w/extra text that fall into the category. {...
def sumDigits(s): """ :Assumes s is a string: :Returns the sum of the decimal digits in s: :For example, if s is 'a2b3c' it returns 5: """ digits = [] for char in s: try: digits.append(int(char)) except ValueError: pass return sum(digits)
def lr_schedule_adam(epoch): """Learning Rate Schedule # Arguments epoch (int): The number of epochs # Returns lr (float32): learning rate """ # for Adam Optimizer lr = 1e-3 if epoch > 350: lr = 1e-5 elif epoch > 300: lr = 1e-4 elif epoch > 200: ...
def index_name(i, j=None, k=None, l=None): """ Provides formatting for a name, given title and up to 3 indices. Parameters: title: string i: string j: string k: string l: string Returns: string """ if i is not None and j is None and k is None and l is No...
def calc_avg(varlist): """ Collecting the statistics for descriptives, including number of elements, number of functions, number of variables, number of constants :param varlist: list of dict of the variables :return: total variables, average elements per equation, number of functions and average, ...
def unpad(bytestring, k=16): """ Remove the PKCS#7 padding from a text bytestring. """ val = bytestring[-1] if val > k: raise ValueError("Input is not padded or padding is corrupt") l = len(bytestring) - val return bytestring[:l]
def find_min_loc(L): """find min loc uses a loop to return the minimum of L and the location (index or day) of that minimum. Argument L: a nonempty list of numbers. Results: the smallest value in L, its location (index) """ minval = L[0] minloc = 0 for i in lis...
def _format_tracestate(tracestate): """Parse a w3c tracestate header into a TraceState. Args: tracestate: the tracestate header to write Returns: A string that adheres to the w3c tracestate header format. """ return ','.join(key + '=' + value for key, value in tracestate.it...
def _running_locally(coreapi_url, jobs_api_url): """Check if tests are running locally.""" return not (coreapi_url and jobs_api_url)
def merge_dicts(*args, **kwargs): """ Merge dict into one dict """ final = {} for element in args: for key in element: final[key] = element[key] return final
def empty_cache(max_T, labeling_with_blanks): """Create empty cache.""" return [[None for _ in range(len(labeling_with_blanks))] for _ in range(max_T)]
def _score(estimator, x, y, scorers): """Return a dict of scores""" scores = {} for name, scorer in scorers.items(): score = scorer(estimator, x, y) scores[name] = score return scores
def gcd(a, b): """ >>> gcd(3,6) 3 >>> gcd(10,15) 5 """ if a == 0: return abs(b) if b == 0: return abs(a) if a < 0: a = -a if b < 0: b = -b while b: c = a % b a = b b = c return a
def permute(string): """permute(str) -> str Outputs a list of all possible permutations a string. Note: If a character is repeated, each occurence as distinct. >>> permute('abc') ['abc', 'acb', 'bac', 'bca', 'cab', 'cba'] >>> permute('dog') ['dog', 'dgo', 'odg', 'o...
def reverse(s): """ (str) -> str Return a reversed version of s. >>> reverse('hello') 'olleh' >>> reverse('a') 'a' """ rev = '' # For each character in s, add that char to the beginning of rev. for ch in s: rev = ch + rev return rev
def create_grid(locked_positions={}): """Creates the playfield's gridfield.""" grid = [[(0, 0, 0) for _ in range(10)] for _ in range(20)] for i in range(len(grid)): for j in range(len(grid[i])): if (j, i) in locked_positions: c = locked_positions[(j, i)] ...
def int_or_none(x): """Given a value x it cast as int or None :param x: The value to transform and return :returns: Either None or x cast to an int """ if x is None: return None return int(x)
def lambda_handler(event, context): """Lambda function which does no operation Args: event (dict): Parameter to pass in event data to the handler. context (bootstrap.LambdaContext): Parameter to provide runtime information to the handler. Returns: json: A simple json object with tw...
def get_role_name(account_id, role): """Shortcut to insert the `account_id` and `role` into the iam string.""" return "arn:aws:iam::{0}:role/{1}".format(account_id, role)
def has_pythonX_package(pkg_name, name_by_version, version): """Given the package name, check if python<version>-<pkg_name> or <pkg_name>-python<version> exists in name_by_version. Return: (bool) True if such package name exists, False otherwise """ return ( 'python{}-{}'.format(version, pk...
def get_primes(start_value, end_value) -> list: """ :param start_value: interval start_value :param end_value: interval end_value :return: List of primes in the given range """ primes_list = [] for value in range(start_value, end_value + 1): if value > 1: for n in range...
def constrain(x, lower, upper): """Limits the incoming value to the given lower and upper limit.""" y = 0 if x > upper: y = upper elif x < lower: y = lower if x > 6500: y = 0 else: y = x return y
def gen_I(n): """Returns an nxn identity matrix.""" return [[min(x // y, y // x) for x in range(1, n + 1)] for y in range(1, n + 1)]
def padr(text, n, c): """ padr - right pad of text with character c """ text = str(text) return text + str(c) * (n - len(text))
def myfun(x, binary=True): """ fonction de seuillage si > theta : 1 si < theta : min sinon theta """ if binary: _min, _theta = 0, .5 else: _min, _theta = -1, 0 if x > _theta: return 1 if x == _theta: return _theta return _min
def convert_list_items(old_list: list, convert_type: type): """ Info: Converts each list item to the type specified Paramaters: old_list: list - List to convert convert_type: type - The type to convert to. Usage: convert_list_items(old_list, convert_type) Retur...
def find_column(header_row, pattern="rs"): """Find the first column in a row that matches a pattern.""" snp_columns = (index for index, column in enumerate(header_row) if column.startswith(pattern)) # return the first index return next(snp_columns)
def invalid_route(path): """Catches all invalid routes.""" response = {"success": False, "error": {"type": "RouteNotFoundError", "message": "No such route"}} return response, 404
def merge_outfiles(filelist, outfile_name): """ merge the output from multiple BLAST runs of type 6 output (no headers) """ # only grab .tab files, ie, the blast output with open(outfile_name, "a") as outf: for idx, f in enumerate(filelist): with open(f, "r") as inf: ...
def skip_mul(n): """Return the product of n * (n - 2) * (n - 4) * ... >>> skip_mul(5) # 5 * 3 * 1 15 >>> skip_mul(8) # 8 * 6 * 4 * 2 384 """ if n == 2: return 2 elif n == 1: return 1 else: return n * skip_mul(n - 2)
def _bool2str(b): """ Convert boolean to string Used by XML serialization """ return "true" if b else "false"
def count_empty_fields(cur_elem): """ Loop through the whole dict and count the number of fields that contain empty values, such as empty lists or empty dicts """ empty_elems = 0 if type(cur_elem) is dict: if len(cur_elem.items()) == 0: empty_elems += 1 for k, v in c...