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def wrap(command: bytes): """ Wrap the given command into the padding bytes \x02 and \x03 :param command: bytes :return: padded command: bytes """ start = b"\x02" stop = b"\x03" return start + command + stop
def count_tags(data): """Count tags from the data. Parameters ---------- data : iterable List containing tuples, which consist of a word and a POS tag. Returns ------- """ counts = {} for _, tag in data: try: counts[tag] += 1 except KeyError: ...
def l2str(items, start=0, end=None): """Generates string from (part of) a list. Args: items(list): List from which the string is derived (elements need to implement str()) start(int, optional): Inclusive start index for iteration (Default value = 0) end(int, optional): Exclusive end index for...
def format_provider(prv_id, name, lastetl, taxrate): """ Helper for provider row formatting """ data_point = {} data_point["ID"] = prv_id data_point["Name"] = name data_point["LastETL"] = lastetl data_point["TaxRate"] = taxrate return data_point
def es_inicio(i,j): """Verifica si el casillero es el de inicio""" if (i == 7 and j == 7): return True else: return False
def word_after(sentence, word): """Return the word following the given word in the sentence string.""" try: words = sentence.split() index = words.index(word) + 1 return words[index] except: return None
def ensure_iterable(value, strict=False, cast=list): """ Ensures that the provided value is an iterable, either raising a ValueError (if `strict = True`) or returning the value as the first element in an iterable (if `strict = False`). """ if not hasattr(value, '__iter__') or isinstance(value, t...
def action_args(pos1, pos2, named1='terry', named2='frank'): """Take positional and named arguments.""" print("arg1: {} arg2: {} named1: {} named2: {}".format( pos1, pos2, named1, named2 )) return True
def get_bboxes_intersection(roiA, roiB): """ Computes the intersection area of two bboxes :param roiA: the first bbox :param roiB: the second bbox :return: the area of the intersection """ xInter = min(roiA[3], roiB[3]) - max(roiA[1], roiB[1]) yInter = min(roiA[2], roiB[2]) - max...
def get_construct_name(words): """ Find the construct name, currently works for: - AsyncFunctionDef - FunctionDef - ClassDef :param words: Tuple of words (no whitespace) :type words: ```Tuple[str]``` :return: Name of construct if found else None :rtype: ```Optional[str]``` """ ...
def sanitize_string(input_string): """Removes unwanted characters from a string and returns the result """ return input_string.replace('"', '')
def intersect_chroms(chroms1,chroms2): """Return the intersection of two chromosome sets""" chroms=set(chroms1).intersection(set(chroms2)) chroms=list(chroms) chroms.sort() return chroms
def vertical(hztl): """ Transpose of a nx9 list args: -hztl - List, on which the Transpose will be applied returns: Transpose of the list, hztl """ i=0 vert = [] while i<9: j=0 ele = [] while j<len(hztl): ele.append(hztl[j][i]) j=j+1 ...
def add_white_space_end(string, length): """ Adds whitespaces to a string until it has the wished length""" edited_string = str(string) if len(edited_string) >= length: return string else: while len(edited_string) != length: edited_string += ' ' return edit...
def limit_string_length(string, max_len=50): """Limit the length of input string. Args: string: Input string. max_len: (int or None) If int, the length limit. If None, no limit. Returns: Possibly length-limited string. """ if max_len is None or len(string) <= max_len: return string else: ...
def maybe_mod(val: str, base=0): """ Takes an argument, which is a string that may start with + or -, and returns the value. If *val* starts with + or -, it returns *base + val*. Otherwise, it returns *val*. """ base = base or 0 try: if val.startswith(('+', '-')): base +...
def valid_ip(ip): """ checks to insure we have a valid ip address """ try: parts = ip.split('.') return len(parts) == 4 and all(0 <= int(part) < 256 for part in parts) except ValueError: return False # one of the 'parts' not convertible to integer except (AttributeError, TypeErro...
def Dic_by_List_of_Tuple(inlist): """ Convert a list of (key,value) tuples to {key:value} dictionary """ outdic={} for key,value in inlist: outdic[key]=value return outdic
def FIRST(expression): """ Returns the value that results from applying an expression to the first document in a group of documents that share the same group by key. Only meaningful when documents are in a defined order. See https://docs.mongodb.com/manual/reference/operator/aggregation/first/ for m...
def get_start_idx(current_window_idx, window_size): """ assuming the following 1. all idx starts from 0 2. end_idx of previous window == start_idx + 1 of the current window. """ return (current_window_idx * window_size)
def sum_digits(y): """Sum all the digits of y. >>> sum_digits(10) # 1 + 0 = 1 1 >>> sum_digits(4224) # 4 + 2 + 2 + 4 = 12 12 >>> sum_digits(1234567890) 45 >>> a = sum_digits(123) # make sure that you are using return rather than print >>> a 6 """ "*** YOUR CODE HERE ***" ...
def composite_trapezoidal(f, b, a, n): """ Calculate the integral from Trapezoidal Rule Parameters: f: Function f(x) a: Initial point b: End point n: Number of intervals Returns: xi: Integral value """ h = (b - a) / n sum_x = 0 for i in range(0,...
def producto_escalar(escalar, vector): """ >>> producto_escalar(2, [1, 2, 3]) [2, 4, 6] :param escalar: :param vector: :return: """ res = [] cont = 0 while cont < len(vector): res.append(escalar * vector[cont]) cont += 1 return res
def debugBlob(blob=None): """In case you need it.""" try: print(str("")) print(str("String:")) print(str("""\"""")) print(str(blob)) print(str("""\"""")) print(str("")) print(str("Raw:")) print(str("""\"""")) print(repr(blob)) print(str("""\"""")) print(str("")) except Exception: return False...
def get_file_name(input_file_name): """ Parses apart the pathway from the raw file name, so the file name can be passed to the rest of the program as a simple variable : Param input_file_name: Full pathway of file being analyzed : Return: The file name with pathway removed """ ...
def has_date(viz_types): """Checks if the datapoint has dates.""" times = False for item in viz_types: if item == 'time': times = True return times
def ns(tags): """go by the tag name, no namespaces for future/version-proofing """ return '/'.join(['*[local-name()="%s"]' % t if t not in ['*', '..', '.'] else t for t in tags.split('/') if t])
def slice_sequence_examples(sequence, num_steps, step_size=1): """ Slices a sequence into examples of length num_steps with step size step_size.""" xs = [] for i in range((len(sequence) - num_steps) // step_size + 1): example = sequence[(i * step_size): (i * step_size) + num_steps] x...
def parsed_path(path): """ message=hello&author=gua { 'message': 'hello', 'author': 'gua', } """ index = path.find('?') if index == -1: return path, {} else: path, query_string = path.split('?', 1) args = query_string.split('&') ...
def get_parameter_for_dev_mode(dev_mode_setting): """Return parameter for whether the test should be running on dev_mode. Args: dev_mode_setting: bool. Whether the test is running on dev_mode. Returns: str: A string for the testing mode command line parameter. """ return '--params....
def extract_vocabulary(D): """ D is the list of documents, pairs of the form (cat, [token, ...]) Returns vocabulary V as a map from words to word indices. """ vocab = set() for (cat, tokens) in D: # naively including every word in the vocabulary! # This could be trimmed down, or...
def is_disease_id(str): """ Returns bool indicating whether or not the passed in string is a valid disease id. Args: str (string) """ return len(str) == 8 and str[0] == "C" and str[1:].isdigit()
def getDeltaMarkup(delta): """Returns sign of delta for elapsed tsc or pmc value""" return '+' if delta > 0 else ''
def adjust_learning_rate_default(epoch, iteration, dataset_len, epochs, warmup_epochs): """ LR schedule that should yield 76% converged accuracy with batch size 256""" factor = epoch // 30 lr = 0.1 ** factor return lr
def search(target, sorted_list): """ The sorted_list should really be sorted """ low_idx = 0 high_idx = len(sorted_list) - 1 while low_idx <= high_idx: mid_idx = int(low_idx + (high_idx - low_idx) / 2) if target < sorted_list[mid_idx]: high_idx = mid_idx - 1 e...
def _sizeof_fmt(num, suffix='B'): """Format a number as human readable, based on 1024 multipliers. Suited to be used to reformat a size expressed in bytes. By Fred Cirera, after https://stackoverflow.com/a/1094933/1870254 Args: num (int): The number to be formatted. suffix (str...
def has_no_keywords(example): """Check if a python file has none of the keywords for: funcion, class, for loop, while loop.""" keywords = ["def ", "class ", "for ", "while "] lines = example["content"].splitlines() for line in lines: for keyword in keywords: if keyword in line.lower(...
def color_html(string, color): """ Wrap a string in a span with color specified as style. """ return '<span style="color: {}">{}</span>'.format(color, string)
def dict_to_list(d): """Converts an ordered dict into a list.""" # make sure it's a dict, that way dict_to_list can be used as an # array_hook. d = dict(d) try: return [d[x] for x in range(len(d))] except KeyError: # pragma: no cover raise ValueError("dict is not a sequence")
def machine_function(project_data, prerequisites): """ Dummy test func. """ return {'version': 'test_v2'}
def MinMaxScaling(input,min,max,a=-1,b=1): """rescales input array from [min,max] -> [a,b]""" output = a + (input-min)*(b-a)/(max-min) return output
def useless_range(rng): """ Check if rng is valid and useful range. Empty range is not significative. :param rng: :return: True | False """ if not rng: return True
def is_bytes(obj): """Helper method to see if the object is a bytestring. >>> is_bytes(b'foo') True """ return type(obj) is bytes
def mask_address(ip, prefix): """ Reduce a 32-bit integer to its first prefix bits :param ip: 32-bit integer :param prefix: integer, 0 <= prefix <= 32 :return: integer corresponding to ip where bits [prefix+1..32] are 0 """ return ip & (0xffffffff << (32 - prefix))
def tempConvert(temp, unit): """ Convert Fahrenheit to Celsius """ if unit == 'F': celsius = (temp-32) * 5/9 return celsius else: return temp
def validate_string(string, min_len=5): """ Validates a string. Returns False if the string is less than 'min_len' long. """ string = string.strip() if len(string) < min_len: return False return True
def convert(size: tuple, box: list): """Takes as input: (width, height) of an image (xmin, ymin, xmax, ymax) of the bounding box and returns (x, y, w, h) of the bounding box in yolo format. """ dw = 1./size[0] dh = 1./size[1] x = (box[2] + box[0])/2.0 y...
def is_state_valid(missionaries_right, cannibals_right): """ Called by generate_child_state so that it does not generate invalid states. """ if missionaries_right > 3 or cannibals_right > 3: return False if missionaries_right < 0 or cannibals_right < 0: return False if missiona...
def divide(x: float, y: float) -> float: """Returns the division of two numbers.""" if y == 0: raise ValueError("Can not divide by zero!") return x / y
def get_uppercase_words(text): """Finds individual uppercase words and return in a list""" s = [] if isinstance(text, list): text = " ".join(text) for t in text.split(): if len(t) > 1: if t.isupper() and not t.isnumeric(): s.append(t) return s
def permutations(str): """Generates all the permutations of a given string. The runtime is O(n*n!) where n is the length of the string. Outer loop runs (n-1). Middle loop runs (n-1)! Inner loop runs (n). (n-1) * (n-1)! * (n) = (n-1) * n! = n*n! - n! = O(n*n!). Arguments: ...
def line2items(l_w, midlabel_func=None, dummy_label="N"): """Returns items of a line with dummy label, use only for tagging""" if midlabel_func is None: midlabel_func = lambda x: x return [(w, midlabel_func(w), dummy_label) for w in l_w]
def avg(l): """Returns the average of a list of numbers Parameters ---------- l: sequence The list of numbers. Returns ------- float The average. """ return(sum(l) / float(len(l)))
def _velocity_to_output(velocity): """Approximately maps keyboard velocity in range [1, 120] to output value in range [0, 255]""" return (velocity - 1) * 2 + 1
def reverse_dict(dictionary): """Reverse a dictionary. Keys become values and vice versa. Parameters ---------- dictionary : dict Dictionary to reverse Returns ------- dict Reversed dictionary Raises ------ TypeError If there is a value which is un...
def split_every(length, collection): """Splits a collection into slices of the specified length""" return [ collection[length * i : length * (i + 1)] for i in range(0, round(len(collection) / length + 1)) if collection[length * i : length * (i + 1)] ]
def index_generation_with_scene_list(crt_i, max_n, N, scene_list, padding='replicate'): """Generate an index list for reading N frames from a sequence of images (with a scene list) Args: crt_i (int): current center index max_n (int): max number of the sequence of images (calculated from 1) ...
def get_part_name(reference: str) -> str: """ Extracts the part name from a passed in SBOL Component reference. Args: reference: Input string. Should look something like <https://synbiohub.programmingbiology.org/user/wrjackso/test/ Design0_Group1_Object2/pTet_Component/1> Retur...
def text2bool(text: str) -> bool: """Convert input text into boolean, if possible.""" if str(text).lower().startswith(("t", "y", "1", "on", "s")): return True elif str(text).lower().startswith(("f", "n", "0", "off")): return False raise ValueError("Valor booleano no comprendido '%s'" %...
def write_positions(positions): """parse float tuples of a text string return string """ result = "" if positions is not None: for x,y in positions: result = "%s %s,%s" % (result, x, y) return result
def parse_boolean_from_param(param): """ Helper to establish True or False """ result = False if param.strip() == "": result = False elif param.strip() == "True": result = True elif param.strip() == "true": result = True elif param.strip() == "False": re...
def yandex_operation_is_failed(data: dict) -> bool: """ :returns: Yandex response contains status which indicates that operation is failed. """ return ( ("status" in data) and (data["status"] in ( # Yandex documentation is different in some places "failure...
def broken_bond_keys(tra): """ keys for bonds that are broken in the transformation """ _, _, brk_bnd_keys = tra return brk_bnd_keys
def skipped_msg(ctx, members): """Returns formatted message listing users.""" if not members: return '' msg = "Skipped: " if len(members) == 1: msg += members[0].name elif len(members) == 2: msg += f'{members[0].name} and {members[1].name}' elif len(members) > 2: ...
def check_params(params, field_list): """ Helper to validate params. Use this in function definitions if they require specific fields to be present. :param params: structure that contains the fields :type params: ``dict`` :param field_list: list of dict representing the fields ...
def apply_no_ans_threshold(scores, na_probs, qid_to_has_ans, na_prob_thresh): """Applies no answer threshhold""" new_scores = {} for qid, s in scores.items(): pred_na = na_probs[qid] > na_prob_thresh if pred_na: new_scores[qid] = float(not qid_to_has_ans[qid]) else: ...
def variable_set_up_computer(num): """Returns the computer's choice""" if num == 1: return 'The computer chose rock.' elif num == 2: return 'The computer chose paper.' elif num == 3: return 'The computer chose scissors.'
def get_swagger_version(obj): """ get swagger version from loaded json """ if isinstance(obj, dict): if 'swaggerVersion' in obj: return obj['swaggerVersion'] elif 'swagger' in obj: return obj['swagger'] elif 'openapi' in obj: return obj['openapi'] ...
def _guess_file_format_1(n): """ Try to guess the file format for flow-graph files without version tag """ try: has_non_numeric_message_keys = any(not ( connection_n.find('source_key').isdigit() and connection_n.find('sink_key').isdigit() ) for connection_n in n.f...
def get_loc_techs(loc_techs, tech=None, loc=None): """ Get a list of loc_techs associated with the given technology and/or location. If multiple of both loc and tech are given, the function will return any combination of members of loc and tech lists found in loc_techs. Parameters ---------- ...
def sortedAcronym(field): """Find first character of each token, and sort them alphanumerically. Examples: .. code:: python > print(sortedAcronym('Xavier woodward 4K')) > ('4Xw',) """ return (''.join(sorted(each[0] for each in field.split())),)
def check_mailing_list(sig_info, errors): """ Check mailing_list :param sig_info: content of sig-info.yaml :param errors: errors count :return: errors """ if 'mailing_list' not in sig_info.keys(): print('ERROR! mailing_list is a required field') errors += 1 else: ...
def _detect_encoding(data=None): """Return the default system encoding. If data is passed, try to decode the data with the default system encoding or from a short list of encoding types to test. Args: data - list of lists Returns: enc - system encoding """ import locale ...
def getIfromRGB(rgb): """ Converts rgb tuple to integer :param rgb: the rgb tuple n 255 scale :return: the integer """ red = rgb[0] green = rgb[1] blue = rgb[2] RGBint = (red << 16) + (green << 8) + blue return RGBint
def n_files_str(count): """Return 'N file(s)' with the proper plurality on 'file'.""" return "{} file{}".format(count, "s" if count != 1 else "")
def theta(x): """heaviside function.""" return int(x >= 0)
def reverseComplement(seq): """ Returns the reverse complement of a DNA sequence, retaining the case of each letter""" complement = "" for base in seq: if base == "A": complement += "T" elif base == "T": complement += "A" elif base == "G": complement += "C" elif ba...
def bool_from_native(value): """Convert value to bool.""" if value in ('false', 'f', 'False', '0'): return False return bool(value)
def _is_empty_tuple(x): """Check if x is either empty or a tuple of (tuples of) empty things.""" if not isinstance(x, (list, tuple)): return False for y in x: if not _is_empty_tuple(y): return False return True
def indent(block_of_text, indentation): """ Helper function to indent a block of text. Take a block of text, an indentation string and return the indented block. """ return "\n".join(map(lambda x: indentation + x, block_of_text.split("\n")))
def caesar_cipher_encode(n: int, text: str, p: str) -> str: """ Returns a string where the characters in text are shifted right n number of spaces. The characters in text are only encrypted if they exist in p. If they don't exist in p, they will remain unchanged. Ex. str = 'abc12' n = 3 ...
def _resolve_collections(collections): """ Split a list of raw collections into a list of database/collection tuples :param list[str] collections: :rtype: list[(str, str|None)] """ ret = [] for raw_collection in collections: attr_chain = raw_collection.split('.', 1) database...
def decodeLF(line): """takes the line as it comes from the socket and decodes it to the original binary data contained in a string of bytes""" return line.replace("\\n", "\n").replace("\\/", "\\")
def get_installation_id(msg_body): """ This is used to identify each bundle install within the porter state store. """ return msg_body['id']
def palindrome1(x): """ Determine if the argument is a palindrome, using a recursive solution. :param x: An iterable. :return: True if the argument is a palindrome, False otherwise. """ # Arguments of length 0 or 1 are always palindromes. if len(x) < 2: return True # If the fir...
def str_dict(some_dict): """Convert dict of ascii str/unicode to dict of str, if necessary""" return {str(k): str(v) for k, v in some_dict.items()}
def get_ids_and_bounds(iterable): """Retrieve the identifier and bounds of a number of objects.""" return [ "{0.lower_bound} <= {0.id} <= {0.upper_bound}".format(elem) for elem in iterable ]
def get_target(name): """Transform the targets to binary labels. """ if name %2 ==0: target = 0 else: target = 1 return target
def rainfall_parti(ptf, snowm, srz, rzsc, beta): """effective precipitation partition""" # pe: effective precipitation pe = ptf + snowm # runoff coefficient rcoeff = 1 - (1 - srz / (rzsc * (1 + beta))) ** beta # infiltration infil = pe * (1 - rcoeff) # water exceed rzsc if infil + sr...
def _parse_req(requires_dist): """Parse "Foo (v); python_version == '2.x'" from Requires-Dist Returns pip-style appropriate for requirements.txt. """ if ';' in requires_dist: name_version, env_mark = requires_dist.split(';', 1) env_mark = env_mark.strip() else: name_version,...
def get_image_path(path:str) -> str: """Takes in the path to an image and returns it in usable format to use in img tags as src attribute Parameters ---------- path : str The raw image path from metadata Returns ------- str The string corresponding to the correct path to us...
def zipwith(Combine, *Lists): """ Combine the elements of two lists of equal length into one list. For each pair X, Y of list elements from the two lists, the element in the result list will be Combine(X, Y). zipwith(fun(X, Y) -> {X,Y} end, List1, List2) is equivalent to zip(List1, List2). Exa...
def pairFR(L): """In : L (list of states) Out: List of pairs with L[0] paired with each state in L[1:], with the distinguishability distance initialized to -1. Helper for generating state_combos. """ return list(map(lambda x: ((L[0], x), -1), L[1:]))
def peak_list_to_dict(peak_list): """Create dict of peaks""" peak_dict = {} for peak in peak_list: peak_dict[peak.peak_id] = peak return peak_dict
def insert_text(original, new, after): """Inserts the new text into the original""" ret = list() for line in original.split('\n'): ret.append(line) if line == after: for new_line in new.split('\n'): ret.append(new_line) return '\n'.join(ret)
def add(X, varX, Y, varY): """Addition with error propagation""" Z = X + Y varZ = varX + varY return Z, varZ
def _remove_bad_times(gutime_result): """This is a hack to deal with some weird GUTime results. In some cases GUTIME will create a TIMEX3 tag with duplicate attributes. For example, with input "at 7:48am (2248 GMT)" you get a TIMEX3 tag spanning "48am" (which is weird in itself) which looks like: <...
def beidou_nav_decode(dwrds: list) -> dict: """ Helper function to decode RXM-SFRBX dwrds for BEIDOU navigation data. :param list dwrds: array of navigation data dwrds :return: dict of navdata attributes :rtype: dict """ return {"dwrds": dwrds}
def full_to_type_name(full_resource_name): """Creates a type/name format from full resource name. Args: full_resource_name (str): the full_resource_name of the resource Returns: str: type_name of that resource """ return '/'.join(full_resource_name.split('/')[-2:])
def EscapeShellArgument(s): """ Quotes an argument so that it will be interpreted literally by a POSIX shell. Taken from http://stackoverflow.com/questions/35817/whats-the-best-way-to-escape-ossystem-calls-in-python """ return "'" + s.replace("'", "'\\''") + "'"