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def a2hex(s): """Converts strin to hex representation: ff:00:ff:00 ...""" return ':'.join(x.encode('hex') for x in s)
def quote_dsn_param(s, _special=' \\\''): """Apply the escaping rule required by PQconnectdb.""" if not s: return "''" for char in _special: if char in s: return "'%s'" % s.replace("\\", "\\\\").replace("'", "\\'") return s
def path_cost(path): """The total cost of a path (which is stored in a tuple with the final action.""" # path = (state, (action, total_cost), state, ... ) if len(path) < 3: return 0 else: action, total_cost = path[-2] return total_cost
def increment_counts(counters, data): """ Counter structure: { "PRDP (program)": { "2014 (year)": { "budget": 123, "count": 123, "has_kml": 123, "has_image": 123, "has_clas...
def get_bounds(im_centre, xlen, width, height): """ calculate the bottom left and top right coordinates """ x, y = im_centre ylen = xlen * (width / height) hx = xlen / 2 hy = ylen / 2 # bottom left and then top right return (x - hx, y - hy), (x + hx, y + hy)
def render_to_log_kwargs(wrapped_logger, method_name, event_dict): """ Render `event_dict` into keyword arguments for :func:`logging.log`. The `event` field is translated into `msg` and the rest of the `event_dict` is added as `extra`. This allows you to defer formatting to :mod:`logging`. .....
def get_xdist_worker_id(config): """ Parameters ---------- config: _pytest.config.Config Returns ------- str the id of the current worker ('gw0', 'gw1', etc) or 'master' if running on the 'master' node. If not distributing tests (for example passing `-n0` or not pas...
def weighted_average(items, weights): """ Returns the weighted average of a list of items. Arguments: items is a list of numbers. weights is a list of numbers, whose sum is nonzero. Each weight in weights corresponds to the item in items at the same index. items and weights must be...
def rectangle_default(length=7, width=4): """ 7. Function with more than one default input arguments This function demonstrates how a function handles more than one input arguments and returns multiple outputs This function calculates the area and perimeter of a rectangle length: the length of ...
def find_possible_orientations(field, coords, length): """ Find possible orientations for a ship. ARGUMENTS: field - field in which to find orientations coords - origin coords of ship in format [x, y] length - length of ship in format int(length) RETURNS: list of possible orientations...
def gc(i): """Return the Gray code index of i.""" return i ^ (i >> 1)
def logistic(y, t=0, r=1, k=1): """Logistic growth model """ dydt = r*y*(1 - y/k) return dydt
def get_window_start_times(profileDict): """ Gets the times of the start of the sampling windows used in the profiled run Args: profileDict (dict): Dictionary of values representing an Arm MAP profiled run Returns: List of start times of sampling window """ asse...
def filter_groups(lint_list): """Remove lints""" return [x for x in lint_list if x['cellId'] != 'group']
def get_band_names(list_of_contents): """ Will return a dictionary of names of bands :param list_of_contents: :return: dict of bands """ bands = {} for x in list_of_contents: if x.endswith('.tif'): if 'band4' in x: bands['red'] = x if 'band...
def get_neighbours(x, y, z): """Get neighbours for three dimension point.""" neighbours = [] for nx in (x - 1, x, x + 1): for ny in (y - 1, y, y + 1): for nz in (z - 1, z, z + 1): if (any(num < 0 for num in (nx, ny, nz)) or (x, y, z) == (nx, ny, nz...
def treatment(pop_input, variables_input, treatment_method_input): """Modular function which receives the treatment method that will be applied for individuals which get out of the function borders.""" return treatment_method_input(pop_input, variables_input)
def delete_resource(payload): """Delete resource""" return {'Dummy': 'ResourceDeleted'}
def in_ranges(char, ranges): """Determines whether the given character is in one of several ranges. :param int char: An integer encoding a Unicode character. :param ranges: A sequence of pairs, where the first element of each pair is the start Unicode character code (including) and the second elem...
def _calc_histogram_bins(count): """ Calculates experience-based optimal bins number for histogram. There should be enough number in each bin. So we calc bin numbers according to count. For very small count(1 - 10), we assign carefully chosen number. For large count, we tried to make sure there are 9-1...
def handle_filename_collision(filename, filenames): """ Avoid filename collision, add a sequence number to the name when required. 'file.txt' will be renamed into 'file-01.txt' then 'file-02.txt' ... until their is no more collision. The file is not added to the list. Windows don't make the d...
def choose(n, k, d={}): """The binomial coefficient "n choose k". Args: n: number of trials k: number of successes d: map from (n,k) tuples to cached results Returns: int """ if k == 0: return 1 if n == 0: return 0 try: return d[n, k] ex...
def edits1(word): """ Return all strings that are one edits away. """ alphabet = 'abcdefghijklmnopqrstuvwxyz' def splits(word): """ return a list of all possible pairs that the input word is made of """ return [(word[:i], word[i:]) for i in range(len(word)+1)]...
def lookup_verbs(roots, spacy_lemmas): """Return a full of list light verbs and all its forms""" def flatten(list_of_lists): "Return a flattened list of a list of lists" return [item for sublist in list_of_lists for item in sublist] verblist = [] for root in roots: verbs = [key...
def locate_candidate_recommendation(recommendation_list): """ Locates a candidate recommendation for workflow testing in our recommendation list. Args: recommendation_list (list[Recommendation]): List of possible recommendations to be our candidate. Returns: Recommendation: A candidate...
def ipc_error_response(resp_data): """Make error response.""" response = ("error", resp_data) return response
def flux(rho, u_max, rho_max): """ Computes the traffic flux F = V * rho. Parameters ---------- rho : numpy.ndarray Traffic density along the road as a 1D array of floats. u_max : float Maximum speed allowed on the road. rho_max : float Maximum car density allowed on ...
def pick_one(iterable): """ Helper function that returns an element of an iterable (it the iterable is ordered this will be the first element). """ it = iter(iterable) return next(it)
def extract_fixed_price(fixed_payment_type: str) -> int: """ Returns the fixed price as int for message_printer() if-statement """ # Accounts for job_post["Budget"] == "$1,234" if "," in fixed_payment_type: return int((fixed_payment_type).replace(",", "").lstrip("$")) # Accounts for job_post["Bu...
def normalize_name(name): """Normalizes a transformice nickname.""" if name[0] == "+": name = "+" + (name[1:].capitalize()) else: name = name.capitalize() if "#" not in name: name += "#0000" return name
def get_relation_phrases(relations): """ :param relations: yaml dict of relation to partial phrases :return: a mapping from relation to all possible phrases """ rel_to_phrases = {} for key, val in relations.items(): for gender in ['male', 'female']: rel = val[gender]['rel'] ...
def guess_ip_version(ip_string): """ Guess the version of an IP address, check its validity \param ip_string A string containing an IP address \return The version of the IP protocol used (int(4) for IPv4 or int(6) for IPv6, int(0) otherwise) """ import socket try: ipv4_bu...
def create_dictionary(all_groups, sub_keys): """ Create nested dictionary - each group within a file and its properties. Parameters ---------- all_groups : List, groups within .h5 file. sub_keys : List, keys for each group within .h5 file. Returns ------- dictionary : Dictionary in...
def calculate_sample_required(conc1, conc2, vol2): """Classic C1V1 = C2V2. Calculates V1. All arguments should be floats. """ if conc1 == 0.0: conc1 = 0.000001 # don't want to divide by zero :) return (conc2 * vol2) / conc1
def multv(A, V, MOD): """ produit matrice/vecteur: A * V """ a00, a10, a01, a11 = A b0, b1 = V return [(a00 * b0 + a10 * b1) % MOD, (a01 * b0 + a11 * b1) % MOD]
def rk4_step(f, x0, t0, t1): """ One time step of Runge-Kutta method f : function dx_dt(t0, x0) x0 : initial condition t0 : this step time t1 : next step time """ delta_t = (t1 - t0) delta_t_half = delta_t * 0.5 t_half = t0 + delta_t_half # Step 1 s1 = f(t0, x0) ...
def nside2npix(nside): """ Convert healpix resolution (nside) to the number of healpix pixels in a full-sky map. """ return 12 * nside * nside
def _check_n_components(n_features, n_components): """Checks that n_components is less than n_features and deal with the None case""" if n_components is None: return n_features if 0 < n_components <= n_features: return n_components raise ValueError('Invalid n_components, must be in [1, %d]' % n...
def Newcombprecangles(epoch1, epoch2): """ ---------------------------------------------------------------------- Purpose: Calculate precession angles for a precession in FK4, using Newcombs method (Woolard and Clemence angles) Input: Besselian start epoch1 and Besselian end epoch2 Returns: A...
def polygon_clip(poly, clip_poly): """ Computes the intersection of an arbitray polygon with a convex clipping polygon, by implementing Sutherland-Hodgman's algorithm for polygon clipping. :param poly: list of tuples, representing the arbitrary polygon :param clip_poly: list of tuples, representing...
def kHat(c, ell, em, ess=-2): """ Compute diagonal elements of sparse matrix to be solved. Inputs: c (float): a * omega ell (int): swsh mode number em (int): mode number ess (int) [-2]: spin number Returns: kHat (float): diagonal element """ # print(ell)...
def prune_empty(row): """ prune attributes whose value is None """ new_row = {} for k in row: if row[k]: new_row[k] = row[k] return new_row
def test_lambda(n): """ >>> [f() for f in test_lambda(3)] [0, 1, 2] """ return [lambda v=i: v for i in range(n)]
def flt(val): """ Returns ------- returns a float value """ try: return float(val) except: return float(0)
def getdate(targetconnection, ymdstr, default=None): """Convert a string of the form 'yyyy-MM-dd' to a Date object. The returned Date is in the given targetconnection's format. Arguments: - targetconnection: a ConnectionWrapper whose underlying module's Date format is used - ym...
def is_float(s): """ Returns True if string 's' is float and False if not. 's' MUST be a string. :param s: string with number :type s: str :rtype: bool """ try: float(s) return True except ValueError: return False
def getAliasString(emailList): """ Function to extract and return a list (String, comma separated) of Mamga aliases from provided email list """ toAlias = '' for toAdd in emailList: toA = toAdd.split('@molten-magma.com')[0] if toAlias == '': toAlias = '%s'...
def reverse_list(in_list): """Return list in reversed index order""" return list(reversed(in_list))
def lever_pressing(eventcode, lever1, lever2=False): """ :param eventcode: list of event codes from operant conditioning file :param lever1: eventcode for lever pressing or :param lever2: optional parameter for second lever eventcode if two levers are used :return: count of first lever presses, seco...
def check_theme(theme, themes): """Check if theme is legit. """ if theme in themes: return theme print(('(!) Theme "{0}" not in {1}, ' 'using "{2}"').format(theme, themes, themes[0])) return themes[0]
def flat_list(l): """ Convert a nested list to a flat list """ try: return [item for sublist in l for item in sublist] except: return l
def deepupdate_dict(target, update): """ Updates dicts and calls itself recursively if a list or dict is encountered to perform updating at nesting levels instead of just the first one. Does not work with tuples. """ for k, v in update.items(): if isinstance(v, list): target[k] = target.get(k, []) + v elif...
def generate_power_sets(sample_list): """Generate all possible subsets from the `sample_list`. Parameters ---------- sample_list : [int] Returns ------- [[int]] All possible subsets """ num_of_combinations = pow(2, len(sample_list)) all_sets = [] for elemen...
def classify(gc_content): """ gc_content - a number representing the GC content Returns a string representing GC Classification. Must return one of these: "low", "moderate", or "high" """ classification = "high" if gc_content < .4: classification = "low" elif gc_content <= .6: ...
def df_string(*args): """ Creates DF command line string """ return ('df', ) + args
def get_vcf(config, var_caller, sample): """ input: BALSAMIC config file output: retrieve list of vcf files """ vcf = [] for v in var_caller: for s in sample: vcf.append(config["vcf"][v]["type"] + "." + config["vcf"][v]["mutation"] + "." + s + "." + v)...
def show_popover_descripcion(descripcion): """ mostrar un pop up con la descripcion de las notificaciones """ return {'descripcion': descripcion}
def report_spdu(spdu_dict: dict) -> str: """A testing/debugging function that returns a printable report of SPDU contents after parsing :param spdu_dict: a dictionary containing SPDU fields such as returned from parse_received_spdu() :type spdu_dict: dict :return: a string representation of the SPDU f...
def generate_city_code(citi): """ A dictionary of city codes used by megabus to identify each city. :return: The proper city code, string. """ citi = citi.strip() # Strips the city provided of any extra spaces citi = citi.upper() citi_codes = { 'ALBANY, NY': '89', 'A...
def move1(course): """Meh >>> move1(EX_INPUT.split('\\n')) (15, 10, 150) """ horiz = 0 depth = 0 for mvt in course: if not len(mvt): continue where, count = mvt.split(" ") count = int(count) if where == "forward": horiz += count ...
def calculate_initial_position_of_sliding_window(num_seeds): """ Calculate the initial position where the sliding position will start its calculations. """ # Calculate the initial position of the sliding window: # We know that the left part of the first interval in the sliding window is: # i...
def get_selected_sentences_with_different_vocabulary(sorted_score_index, sorted_indeces_no_predicted_chunks, step_size, majority_category, inactive_learning, prefer_predicted_chunks): """ Help function to do the final selection of samples. """ #print("sorted_score_index", sorted_score_index) #print...
def comma_separated_list(value): """ Configuration-friendly list type converter. Supports both list-valued and string-valued inputs (which are comma-delimited lists of values, e.g. from env vars). """ if isinstance(value, list): return value if value == "": return [] retu...
def cross(A, B): """Calculate the cross product of two arrays. Args: A(list) - the left side of the cross product B(list) - the right side of the cross product Returns: A list containing all possible combinations of elements from A and B """ return [ s+t for s in A for t in ...
def get_head(page, marker): """ Returns page content before the marker """ if page is None: return None if marker in page: return page.split(marker,1)[0]
def get_uce_name(header): """use own function vs. import from match_contigs_to_probes - we don't want lowercase""" return header.lstrip('>').split(' ')[0].split('_')[0]
def cvtRange(x, in_min, in_max, out_min, out_max): """ Convert a value, x, from its old range of (in_min to in_max) to the new range of (out_min to out_max) """ return (x - in_min) * (out_max - out_min) / (in_max - in_min) + out_min
def unique(x): """Convert a list in a unique list.""" return list(set(x))
def tenth(raw_table, base_index): """ Word value divide by ten """ raw_value = raw_table[base_index] if raw_value == 0xFFFF: return None sign = 1 if raw_value & 0x8000: sign = -1 return sign * (raw_value & 0x7FFF) / 10
def combine_dictionaries( dictionaries): """Utility for merging entries from all dictionaries in `dictionaries`. If there are multiple dictionaries with the same key, the entry from the latest dictionary is used for that key. Args: dictionaries: Iterable of dictionaries to combine entries of. Retur...
def fetch_token_mock(self, token_url=None, code=None, authorization_response=None, body='', auth=None, username=None, password=None, method='POST', ...
def compress(uncompressed): # uncompressed is a string """Compress a string to a list of output symbols.""" # Build the dictionary. dict_size = 256 dictionary = {chr(i): i for i in range(dict_size)} w = "" result = [] for c in uncompressed: wc = w + c if wc in dictionary:...
def birth_x(well): """If the chosen well is empty, will create an xantophore""" if well == 'S': return 'X' else: return well
def inRegion(reg, site): """given a region tuple, (start, end) returns True if site is >= start <= end""" return site >= reg[0] and site <= reg[1]
def intcode_parse(code): """Accepts intcode. Parses intcode and returns individual parameters. """ actual_code = code % 100 parameter_piece = code - actual_code parameter_piece = parameter_piece // 100 parameter_code_list = [] while parameter_piece > 0: parameter_code_list.append(param...
def calculate_m(q_c1ncs): """ m parameter from CPT, Eq 2.15b """ m = 1.338 - 0.249 * q_c1ncs ** 0.264 if q_c1ncs >= 254: m = 0.263823991466759 if q_c1ncs <= 21: m = 0.781756126201587 return m
def __is_dead(ref): """Return ``True`` if the weak reference `ref` no longer points to an in-memory object. """ return ref() is None
def clear(x, y, player, game_map): """ check if cell is safe to move in """ # if there is no shipyard, or there is player's shipyard # and there is no ship if ((game_map[x][y]["shipyard"] == player or game_map[x][y]["shipyard"] == None) and game_map[x][y]["ship"] == None): retu...
def strongly_connected_components(graph): """ Tarjan's Algorithm (named for its discoverer, Robert Tarjan) is a graph theory algorithm for finding the strongly connected components of a graph. graph should be a dictionary mapping node names to lists of successor nodes. Based on: http://en.wiki...
def druckumrechner(inHG): """ Umwandlung von inHG in mBar :param inHG: int, float or None :return: float or None """ if isinstance(inHG, (int, float)): mbar = inHG * 33.86389 mbar = round(mbar, 2) return mbar else: return None
def number_of_ways_for_the_frog_to_jump_n_feet(n): """number of ways for the frog to jump n feet :param n: num of feets :return: """ global total if n == 0: return 1 if n < 0: return 0 return number_of_ways_for_the_frog_to_jump_n_feet(n - 1) + number_of_ways_for_the_fro...
def location_name(country=None, state=None): """return the name of the country and/or state used in the current filter""" locations = [] if state: locations.append(state) if country: locations.append(country) return " - ".join(locations) if len(locations) > 0 else "everywhere"
def is_subpath(x, y): """Returns True if x is a subpath of y, otherwise return False. Example: is_subpath('/a/', '/b/') = False is_subpath('/a/', '/a/') = True is_subpath('/a/abc', '/a/') = True is_subpath('/a/', '/a/abc') = False """ if y.endswith("/"): return x.startswith(y) o...
def sanitize_name(name: str): """ Sanitize the callsites for general dataset. """ ret_name = "" if name is None: ret_name = "Unknown" return ret_name if "/" in name: name_split = name.split("/") ret_name = name_split[len(name_split) - 1] else: ret_name...
def format_nri_list(data): """Return NRI lists as dict with names or ids as the key.""" if not data: return None info = {} for item in data: if item.get("name") is not None: key = item.pop("name") elif item.get("id") is not None: key = item.pop("id") ...
def merge_two_dicts(x, y): """Given two dicts, merge them into a new dict as a shallow copy. Credit: http://stackoverflow.com/questions/38987/how-to-merge-two-python-dictionaries-in-a-single-expression""" z = x.copy() z.update(y) return z
def validate_tag(tag): """ Chceks if tag is valid. Tag should not be empty and should start with '#' character """ tag = tag.strip().lower() return len(tag) > 1 and tag.startswith("#")
def get_public_members(obj): """ Retrieves a list of member-like objects (members or properties) that are publically exposed. :param obj: The object to probe. :return: A list of strings. """ return {attr: getattr(obj, attr) for attr in dir(obj) if not attr.startswith("_") ...
def cast_string_to_int_error(what): """ Retrieves the "can not cast from string to integer" error message. :param what: Environment variable name. :return: String - Can not cast from string to integer. """ return "ERROR: " + what + " value cannot be cast from string to int"
def column_names(row, colnames): """ Pair items in row with corresponding column name. Return dictionary keyed by the column names. """ mapped = {col_name: val for val, col_name in zip(row, colnames)} return mapped
def get_bucket_name(gem_group, barcode, num_buckets): """ gem_group - integer barcode - barcode sequence num_buckets - desired number of buckets for gem group """ # NOTE: Python modulo returns non-negative numbers here, which we want return str(gem_group) + '-' + str(hash(barcode) % num_buc...
def make_table_options(param): """make table param of Embedding tables Args: param (dict or list): param can be initializer or list of column_option. initializer can be made by make_uniform_initializer or make_normal_initializer, column options can be made by make_column_options Returns: d...
def power_bin_recursive(base, exp): """Funkce vypocita hodnotu base^exp pomoci rekurzivniho algoritmu v O(log(exp)). Staci se omezit na prirozene hodnoty exp. """ if exp == 0: return 1 if exp % 2 == 1: return base * power_bin_recursive(base * base, exp // 2) return power_bin_re...
def mass_to_richness(mass, norm=2.7e13, slope=1.4): """Calculate richness from mass. Mass-richness relation assumed is: mass = norm * (richness / 20) ^ slope. Parameters ---------- mass : ndarray or float Cluster mass value(s) in units of solar masses. norm : float, optional ...
def trim_string(text: str, max_length: int = 200, ellipsis: str = "...") -> str: """ If text is longer than max_length then return a trimmed string. """ assert max_length >= len(ellipsis) if len(text) > max_length: return text[: max_length - len(ellipsis)] + ellipsis else: return...
def _escape_column(column): """ transfer columns, return tuple, such as ('a', 'b', 'c'), when constructing SQL, direct use the__ str__ () method """ if not len(column): raise ValueError('Field cannot be empty') if len(column) == 1: column = column[0] if isinstance(column...
def center(numpoints, refcoords): """Center a molecule using equally weighted points. :param numpoints: number of points :type numpoints: int :param refcoords: list of reference coordinates, with each set a list of form [x,y,z] :type refcoords: [[float, float, float]] :return: (cen...
def replace(txt, start, end, repltxt): """Replaces the part of txt between index start and end with repltxt""" return txt[:start] + repltxt + txt[end+1:]
def vec_is_void(a): """ Check whether a given vector is empty A vector is considered "void" if it is None or has no elements. Parameters ---------- a: list[] The vector to be checked Returns ------- bool True if the vector is empty, False otherwise """ ...
def float_or_string(arg): """Force float or string """ try: res = float(arg) except ValueError: res = arg return res