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def add_up(n): """ Adds up all numbers from 1 to n. """ numbers = range(1, n + 1) return sum(numbers)
def serial_to_chamber(x: int) -> int: """Convert serialized chamber id to chamber number.""" return (x & 0x0000003F) + 1
def _to_list(obj): """Make object into a list""" return [obj] if not isinstance(obj, list) else obj
def u_func(c, h, mp): """ Calculates utility of chosen (consumption, housing) bundle. Args: c (float): consumption h (float): housing mp (dict): model parameters. Returns: (float): utility of bundle """ return (c**(1-mp['phi']))*(h**mp['phi'])
def JsonString_to_JsonFile(json_string,file_name="test.json"): """Transforms a json string to a json file""" out_file=open(file_name,'w') out_file.write(json_string) out_file.close() return file_name
def _py_assert_stmt(expression1, expression2): """Overload of assert_stmt that executes a Python assert statement.""" assert expression1, expression2() return None
def do_the_diff(defaults, overrides): """Diff two yaml loaded objects, returning diffs in a namedtuple :param defaults: File you wish to compare against, the base. :param overrides: File you wish to compare, the mask. :return: stuff :rtype: dict """ new_combined_diff = {} for key in o...
def pad(l, until=0, fillvalue=None): """ Pad a list. """ for _ in range(until - len(l)): l.insert(0, fillvalue) return l
def convert (number): """ :param number: int :return: str - as requested """ result = '' if (number % 3) == 0: result = 'Pling' if (number % 5) == 0: result += 'Plang' if (number % 7) == 0: result += 'Plong' if len (result) == 0: return f'{number...
def get_total_colors(color_frequencies: dict) -> int: """Count total amount of colors""" return len([p for p in color_frequencies.values() if p])
def generate_variable(r, c, n): """Creates a label for the coordinates and contents of a cell.""" return f'{r},{c}_{n}'
def merge_timelines(timeline_a, timeline_b): """Takes two timelines, both of which must contain a list of times and a list of values, and combines them into a single timeline containing a list of times and added values, so that if an interval in both timelines overlap, then the returned timeline will sh...
def nexus_infile(myid,itwist): """ nexus style input name Args: myid (str): prefix itwist (int): twist index Returns: str: input filename """ prefix = myid.split('.')[0] infile = '.'.join([prefix,'g%s'%str(itwist).zfill(3),'twistnum_%d'%itwist,'in','xml']) return infile
def xlen(seq): """ Returns the length of a sequence or None. Parameters ---------- seq : iterable or None Returns ------- int or None """ if (seq is None): return seq return len(seq)
def divider_row(sizes): """ Create a one line string of '-' characters of given length in each column """ s = '' for i in range(len(sizes)): s = s + '-'.ljust(sizes[i], '-') + ' ' return s
def isempty(s): """return if string is empty """ if s is None or s == "" or s == "-": return True else: return False
def count_vowels(s): """ (str) -> int Return the number of vowels (a, e, i, o, and u) in s. >>> count_vowels('Happy Anniversary!') 5 >>> count_vowels('xyz') 0 """ num_vowels = 0 for char in s: if char in 'aeiouAEIOU': num_vowels = num_vowels + 1 return nu...
def should_force_reinit(config): """Configs older than 2.0.0 should be replaced""" ver = config.get("cli_version", "0.0.0") return int(ver.split(".")[0]) < 2
def extract_features(document, word_features): """ Used to get a word vector required by the naive bayes classifier for training and during streaming :param document: tokens :param word_features: all words :return: """ document_words = set(document) features = [] for word in word_fea...
def get_errors_from_serializer(serializer_errors): """ Extracts the errors from the serializer errors into a list of strings. """ errors = [] for key, details in serializer_errors.items(): for error in details: errors.append(str(error)) return errors
def check_parameter_string(candidate, param): """Checks that a parameter is a string or a list of strings. """ parameters = { "site": "NWIS station id(s) should be a string or list of strings," + "often in the form of an eight digit number enclosed in quotes.", "parameterCd": "NWIS p...
def scalar_mul(eta, x): """Scalar multiplication. Return a list with the same dimensions as `x` where each element in `x` is multiplied by `eta`. Args: eta (float) Scalar to apply to `x`. x (list): Vector to scale. 1 or 2 dimensional. Returns: list: A scaled list. Same dimensio...
def calc_lcoe_om(fom, vom, cf=1): """ :param fom: Fixed operation and maintentance costs as CURR/KWY :param vom: Variable cost in the form of CURR/ KWH :param cf: Capacity factor assumed for the plant, default is 1 :return: LCOE O&M component in CURR per KWh """ fixed = fom / (cf * 8600) ...
def process_funql(funql): """Remove quotes and unnecessary spaces.""" funql = funql.replace("'", "") funql = funql.replace(", ", ",") funql = funql.replace(", ", ",") funql = funql.replace(" ,", ",") return funql
def intersection(L1, L2): """ Find the intersection point of the two lines A1 * x + B1 * y = C1 A2 * x + B2 * y = C2 The intersection point is: x = Dx/D y = Dy/D The determinant D A1 B1 which is L1[0] L1[1] A2 B2 L2[0] L2[1] Dx: C1 B1 which is L1[2...
def parse_line(line): """Parse a line of instructions and return a (step, requires) tuple""" assert line.startswith("Step ") and line.endswith(" can begin.") word = line.split() return word[7], word[1]
def quantize(rgb, quanta): """map a tuple (r,g,b) each between 0 and 255 to our discrete color buckets""" r,g,b = rgb r = max([q for q in quanta if q <= r]) g = max([q for q in quanta if q <= g]) b = max([q for q in quanta if q <= b]) return (r,g,b)
def create_word_vocab(input_data): """create word vocab from input data""" word_vocab = {} for sentence in input_data: words = sentence.strip().split(' ') for word in words: if word not in word_vocab: word_vocab[word] = 1 else: word_voc...
def list_merger(base_list, overlay_list): """It is important to note we expect both arg lists to be non-repeating. Merges lists such that the `base_list` is preserved and the `overlay_list` is overlaid onto it. Example: source = ['Node', 'Node1'] target = ['Node', 'Jack'] returns = ['Node', ...
def point_sub(a, b): """ Subtract two 2d vectors (Inline this if you can, function calls are slow) """ return (a[0] - b[0], a[1] - b[1])
def unwrap(mappings): """Remove the set() wrapper around values in component-to-team mapping.""" for c in mappings['component-to-team']: mappings['component-to-team'][c] = mappings['component-to-team'][c].pop() return mappings
def choice_id(choice): """ Returns Choice type field's choice id for form rendering """ try: resp = choice[0] except IndexError: resp = '' pass return resp
def camel_case(name): # type: (str) -> str """Return a camelCased version of a string.""" return name[0:1].lower() + name[1:]
def _validate(validation_func, err, *args): """Generic validation function that returns default on no errors, but the message associated with the err class otherwise. Passes all other arguments into the validation function. :param validation_func: The function used to perform validation. :param err...
def sort_by(comparator, list): """Sorts the list according to the supplied function""" return sorted(list, key=comparator)
def gcd_recursive_by_divrem(m, n): """ Computes the greatest common divisor of two numbers by recursively getting remainder from division. :param int m: First number. :param int n: Second number. :returns: GCD as a number. """ if n == 0: return m return gcd_recursive_by_div...
def sort_and_print(body, num): """ Sorts the values of dictionaries and prints respective top sentences :param body: list of dictionaries of 'sentence': score :param num: no of sentences to be printed :return: prints """ result = [] rank = [] for sentdict in body: for sen...
def _clean_message(output: str) -> str: """Strips the succeeding new line and carriage return characters.""" return output.rstrip("\n\r")
def time_is_hh_mm_ss_ms(str_hh_mm_ss_ms): """test if time value is format hh:mm:ss.ms Args: str_hh_mm_ss_ms (str): time value Raises: Exception: incorrrect format Returns: bol: True if valid """ try: hr, min, sec = map(float, str_hh_mm_ss_ms.split(':')) ...
def reverse_dict(dct): """ Reverse the {key:val} in dct to {val:key} """ newmap = {} for (key, val) in dct.items(): newmap[val] = key return newmap
def _get_interior_years(from_year, to_year, start_year, end_year): """Return the Rule years that overlap with the Match[start_year, end_year]. """ years = [] for year in range(start_year, end_year + 1): if from_year <= year and year <= to_year: years.append(year) return years
def ctd_sbe37im_preswat(p0, p_range_psia): """ Description: OOI Level 1 Pressure (Depth) data product, which is calculated using data from the Sea-Bird Electronics conductivity, temperature and depth (CTD) family of instruments. This data product is derived from SBE 37IM instru...
def M_from_t(t,n,M0,t0): """ find mean anomaly at time t Parameters ---------- t time to find M for n mean motion M0 reference mean anomaly at time t0 t0 reference time t0 Note that M = 0 at pericentre so if t0 = pericentre passage time then M0 = 0 ...
def decode_cp1252(string): """ CSV files look to be in CP-1252 encoding (Western Europe) Decoding to ASCII is normally fine, except when it gets an O umlaut, for example In this case, values must be decoded from cp1252 in order to be added as unicode to the final XML output. This function helps ...
def count_mismatches(aligned_seq1, aligned_seq2): """ :param seq1, aligned_seq2: aligned sgRNA and genomic target (seq+PAM) :return: """ cnt = 0 ending = len(aligned_seq1) - 3 for i in range(ending): cnt += int(aligned_seq1[i] != aligned_seq2[i] and aligned_seq1[i] != "-" and aligned_seq2[i] != "-") ...
def decimal_to_binary_util(val): """ Convert 8-bit decimal number to binary representation :type val: str :rtype: str """ bits = [128, 64, 32, 16, 8, 4, 2, 1] val = int(val) binary_rep = '' for bit in bits: if val >= bit: binary_rep += str(1) val -= bi...
def get_catalog_record_embargo_available(cr): """ Get access rights embargo available date as string for a catalog record. :param cr: :return: """ return cr.get('research_dataset', {}).get('access_rights', {}).get('available', '')
def _damerau_levenshtein(a, b): """Returns Damerau-Levenshtein edit distance from a to b.""" memo = {} def distance(x, y): """Recursively defined string distance with memoization.""" if (x, y) in memo: return memo[x, y] if not x: d = len(y) elif not y: d = len(x) else: ...
def itb(num: int, length: int): #print(num) """ Converts integer to bit array Someone fix this please :D - it's horrible :param num: number to convert to bits :param length: length of bits to convert to :return: bit array """ if num >= 2**length: num = 2**length - 1 if nu...
def get_filesize_est(n_regions): """ Get a filesize estimate given the number of regions in grid encoding. Parameters ---------- n_regions: int number of regions encoded by grid encoding Returns ------- float Estimated filesize """ return 0.00636654 * n_regions...
def sext(binary, bits): """ Sign-extend the binary number, check the most significant bit """ neg = binary & (1 << (bits - 1)) if neg: mask = 0 for i in range(bits, 16): mask |= (0b1 << i) return (mask | binary) else: return binary
def zfp_precision_opts(precision): """Create a compression options for ZFP in fixed-precision mode The float precision parameter is the number of uncompressed bits per value. """ zfp_mode_precision = 2 return zfp_mode_precision, 0, precision, 0, 0, 0
def schur_representative_from_index(i0, i1): """ Simultaneously reorder a pair of tuples to obtain the equivalent element of the distinguished basis of the Schur algebra. .. SEEALSO:: :func:`schur_representative_indices` INPUT: - A pair of tuples of length `r` with elements in `\{1,\...
def get_qualified_name(_object): """Return the Fully Qualified Name from an instance or class.""" module = _object.__module__ if hasattr(_object, '__name__'): _class = _object.__name__ else: _class = _object.__class__.__name__ return module + '.' + _class
def is_valid(x, y, grid, x_max, y_max): """Check the bounds and free space in the map""" if 0 <= x < x_max and 0 <= y < y_max: return grid[x][y] == 0 return False
def keys_of(d): """ Returns the keys of a dict. """ try: return list(d.keys()) except: raise ValueError('keys_of(d) must be passed a dict')
def sint(mixed, default=None): """Safe int cast.""" try: return int(mixed) except: return default
def quick_exponent_with_mod(base, power, modulo): """Compute quickly the exponent within a given modulo range. Will apply a modulo with the specified base at every iteration of the exponentiation algorithm, making sure the result is in the given range.""" # 'powers' will be a list of the base with powe...
def list_to_string(list_to_convert): """ list_to_convert -> List that should be converted into string e.g. '[1,2,False,String]' returns string """ list_to_string = '[' for j in range(len(list_to_convert)): list_to_string += str(list_to_convert[j]) + ',' # remove last ',' lis...
def compute_U(Sigma_sfr, Sigma_g): """ Ionizaton parameter as a function of star formation and gas surface densities. reference: Eq. 38 Ferrara et al. 2019 inputs: Sigma_sfr in Msun/yr/kpc^2 Sigma_g in Msun/kpc^2 """ out= (1.7e+14)*(Sigma_sfr/(Sigma_g*Sigma_g)) return ou...
def _coerce_ascii(c): """ coerce an ASCII value into the alphabetical range """ while True: if c > 127: c -= 128 if c < 64: c += 64 if (c >= 65 and c <= 90) or (c >= 97 and c <= 122): return c c += 7
def status_8bit(inp): """ Return the status of each bit in a 8 byte status """ idx = 7 matches = {} for num in (2 ** p for p in range(idx, -1, -1)): if ((inp - num) > 0) or ((inp - num) == 0): inp = inp - num matches[idx] = True else: matches[...
def query_url(namespace, cls_version, extension=''): """ """ url = 'https://kg.humanbrainproject.org/query/%s/%s/fg' %\ (namespace.lower(), cls_version) return url+extension
def prune_position(step): """Keep only ``left`` and ``top`` keys in step position.""" return {k: v for k, v in step.get('position', {}).items() if k in ('left', 'top')}
def _header_name(channel_name: str, i_bin: int, unique: bool = True) -> str: """Constructs the header name for a column in a yield table. There are two modes: by default the names are unique (to be used as keys). With ``unique=False``, the region names are skipped for bins beyond the first bin (for les...
def pack_message_other(code, data): """ Method by which other modules messages are (re-)packed :param code: the code of the message :param data: the data to pack :return: dict, code and data """ b_data = bytes(data, 'ascii') return {'code': code, 'data': b_data}
def solution(N): """ DINAKAR convert to binary and find gap by just knowing the entry of 1 and remember the last index of 1 also remember the longest in each iteration when 1 is encountered """ longest = -1 last_longest_index = 0 ar = bin(N).replace("0b", "") print(ar) for i in r...
def get_item_safe(sequence, index=0, default=""): """ Retrives the item at index in sequence defaults to default if the item des not exist """ try: item = sequence[index] except IndexError: item = default return item
def merge_datasets(datasets): """ Merge a list of datasets into one dataset """ dataset = datasets[0] for i in range(1, len(datasets)): dataset.extend(datasets[i]) return dataset
def get_subdict(d, param): """ Get a subdictionary d : key -> value in a dictionary of form d : key -> (d : param -> value) """ return dict([(key, d[key][param]) for key in d.keys()])
def check_correlation_method(method): """Confirm that the input method is currently supported. Parameters ---------- method : str The correlation metric to use. Returns ------- str Correctly formatted correlation method. """ method = method.lower() avail_metho...
def get_label_from_iri_list(iri_list, iri2label_dict): """ Helper for getting labels of a df with IRI lists as values using an iri2label dict""" label_list = [iri2label_dict[iri] for iri in iri_list] return label_list
def StripComments(lines): """strip comments and empty lines """ result = [] found_comment = 0 for line in lines: if not line.strip(): continue if found_comment: if line.startswith(" */"): found_comment = 0 else: if line.startswith(" //"): continue elif li...
def _number(string): """ Extracts an int from a string. Returns a 0 if None or an empty string was passed. """ if not string: return 0 else: try: return int(string) except ValueError: return float(string)
def next_month_is(year, month): """ Short function to get the next month given a particular month of interest :param year: year of interest :param month: month of interest :type year: integer :type month: integer """ next_year = year next_month = month + 1 if next_month > 12...
def example_func(parameter): """ This is an example function """ try: var = int(parameter) result = var * var except ValueError: result = 'Nan' return result
def removeTags(fileStr): """ Removes all tags from the chat that start with '<xyz' and end with '</xyz'. """ current = 0 while True: #print("Next char:",fileStr[current]) openAngleBracketIndex = fileStr.find('<',current) if openAngleBracketIndex == -1: ...
def class_ldap(log): """An error classifier. log the console log text Return None if not recognized, else the error type string. """ if 'failed to bind to LDAP server' in log: return 'LDAP failure' return None
def array_chunk_loop(array, size): """Return an array containing chunks of the specified array with the specified size, using a loop.""" result = [] chunk = [] for i, value in enumerate(array): chunk.append(value) if len(chunk) == size or i + 1 == len(array): result.append(ch...
def flatten(data): """ Flatten a list/tuple/set of any nestedness. """ result = [] for item in data: if isinstance(item, (tuple, list, set)): result.extend(flatten(item)) else: result.append(item) return result
def check_line_for_error(line,errormsg): """ Parse given line for VASP error code Args: line (string): error statement Returns: errormsg (string): VASP error code """ if 'inverse of rotation matrix was not found (increase SYMPREC)' in line: errormsg.append('inv_rot_mat') elif 'WARNING: Sub-Space-Matrix i...
def auc(points): """Calulate the area under the curve using trapezoid rule.""" return sum((p[0]-lp[0])/100*(lp[1]+(p[1]-lp[1])/2.0)/100 for p, lp in zip(points[1:], points[:-1]))
def learner_stats_id(ctr_info): """Assemble stats id.""" broker_id = ctr_info.get('broker_id') explorer_id = ctr_info.get('explorer_id') agent_id = ctr_info.get('agent_id') return "_".join(map(str, (broker_id, explorer_id, agent_id)))
def isSet(input): """ This function check input is a set object. :param input: unknown type object """ return isinstance(input, set)
def pascal_triangle(n): """pascal triangle""" if (n <= 0): return [] init = [[1]] for i in range(1, n): if (i == 1): init.append([1, 1]) else: init.append([0] * (i + 1)) init_point = 0 for num in range(i + 1): if (nu...
def fnSeconds_To_Hours(time_period): """ Convert from seconds to hours, minutes and seconds. Date: 16 October 2016 """ num_hrs = int(time_period/(60.*60.)); time_period =time_period - num_hrs*60.*60.; num_mins = int(time_period/60.); num_secs = time_period - num_mins*60.; return...
def with_subfolder(location: str, subfolder: str): """ Wrapper to appends a subfolder to a location. :param location: :param subfolder: :return: """ if subfolder: location += subfolder + '/' return location
def merge(dict1, dict2, def1, def2, func): """Merge two nested dictionaries, using default values when it makes sense""" assert isinstance(dict1, dict) assert isinstance(dict2, dict) toReturn = {} keys1 = set(dict1.keys()) keys2 = set(dict2.keys()) for key in keys1 | keys2: # change this ...
def create_mute_list(time_list): """ Args: subs (tuple): a list of tuples (start,end) Returns: """ muteTimeList = [] for timePair in time_list: lineStart = timePair[0] lineEnd = timePair[1] muteTimeList.append("volume=enable='between(t," + format...
def is_convolution_or_linear(layer): """ Return True if `layer` is a convolution or a linear layer """ classname = layer.__class__.__name__ if classname.find('Conv') != -1: return True if classname.find('Linear') != -1: return True return False
def ngram(max_ngram_size: int, s1: str, s2: str, *, weighted: bool = False, any_mismatch: bool = False, longer_worse: bool = False) -> int: """ Calculates how many of n-grams of s1 are contained in s2 (the more the number, the more words are similar). Args: max_ngram_size: n in ngram ...
def get_audio_args(name, data, sample_rate=None, step=None, **kwargs): """ Wrapper to parse args """ return (name, data, step, sample_rate)
def _crossing(n_x, n_y, n, shift): """tells you if the shift crosses PBC in the x or why direction :param n_x: system size in x :type n_x: int :param n_y: system_size in y :type n_y: int :param n: what index you are currently at :type n: int :param shift: whoch way you want to shift to ...
def qmul(q1, q2): """ Return quaduple (4 tuple) result of quaternion multiplation of q1 * q2 Quaternion multiplication is not commutative q1 * q2 != q2 * q1 Quaternions q1 and q2 are sequences are of the form [w, x, y, z] """ w = q1[0] * q2[0] - q1[1] * q2[1] - q1[2] * q2[2] - q1[3] * q2[3] ...
def build_placements(shoes): """ (list of str) -> dict of {str: list of int} Return a dictionary where each key is a company and each value is a list of placements by people wearing shoes made by that company. >>> result = build_placements(['Saucony', 'Asics', \ 'Asics', 'NB...
def get_path(obj, *keys): """Extract a value from a JSON data structure.""" for key in keys: if not obj: return obj if isinstance(key, int): try: obj = obj[key] except IndexError: return None elif isinstance(key, str): ...
def decimal_to_string(decimal): """ """ # Don't love this problem_fractions = {0.13: "1/8", 0.67: "2/3", 0.33: "1/3"} if decimal in problem_fractions: return problem_fractions.get(decimal) ratio = float(decimal).as_integer_ratio() return "/".join(str(d) for d in ratio)
def key_to_list(key): """make a list that contains primaryKey of this ingredient""" return [x.strip() for x in key.split(',')]
def formatannotation_fwdref(annotation, base_module=None): """the python 3.7 _formatannotation with an extra repr() for 3rd party modules""" if getattr(annotation, "__module__", None) == "typing": return repr(annotation).replace("typing.", "") if isinstance(annotation, type): if annotat...
def prod(iterator): """Product of the values in this iterator.""" p = 1 for v in iterator: p *= v return p