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def binary_string(number: int) -> str: """Number to binary string :param number: some number (an integer) to turn into a binary string :return: Some string which is the binary string :rtype: str .. doctest:: python >>> binary_string(200) '11001000' >>> binary_string(10) ...
def zeros(shape: tuple) -> list: """ Return a metrics that all elements are zero with the specified shape. """ return [shape[1] * [0] for _ in range(shape[0])]
def reextract_table_filename(table_file_name: str) -> str: """ :param table_file_name: :return: """ return table_file_name.replace('.tbl', '.reextract.tbl')
def deep_tuple(x): """Convert list recursively to tuple.""" if isinstance(x, list): return tuple(map(deep_tuple, x)) return x
def horizon_float(k0, plus_or_minus): """Returns a floating point representation of k direction face index; eg. 3.5 for face between layers 3 and 4.""" result = float(k0) if plus_or_minus == '+': result += 0.5 elif plus_or_minus == '-': result -= 0.5 else: assert False return result
def check_kwargs(keys, list_of_valid_params, exception): """ Make sure we have a valid set of keys for a given endpoint. If list_of_valid_params is `None` we don't have anything to check. """ if list_of_valid_params: for key in keys: if key not in list_of_valid_params: er...
def pad_decr(ids): """Strip ID 0 and decrement ids by 1.""" if len(ids) < 1: return list(ids) if not any(ids): return [] # all padding. idx = -1 while not ids[idx]: idx -= 1 if idx == -1: ids = ids # pylint: disable=self-assigning-variable else: ids = ids[:idx + 1] return [i - 1 fo...
def parser_private_data_indicator_Descriptor(data,i,length,end): """\ parser_private_data_indicator_Descriptor(data,i,length,end) -> dict(parsed descriptor elements). This descriptor is not parsed at the moment. The dict returned is: { "type": "private_data_indicator", "contents" : unparsed_desc...
def get_source_uuids(*sources) -> str: """Returns file_uuid attributes of objects. Args: *sources: Objects whose file_uuid attributes are read (if exist). Returns: str: UUIDs separated by comma. """ uuids = [source.dataset.file_uuid for source in sources if hasattr(source, 'datase...
def parse_date(datestring, languagecode): """Parses a string of format yyyy-mm-dd into yyyy, mm-dd""" months = {'en': { '01': 'Jan', '02': 'Feb', '03': 'Mar', '04': 'Apr', '05': 'May', '06': 'Jun', '07': 'Jul', '08': 'Aug', '09': 'Sep', ...
def addhttp(url, s=False): """ Add 'http://' prefix to url """ """ Strip 'http://' or https:// prefix to url """ if url[:7] == 'http://': return url elif url[:8] == 'https://': return url return ("https://" if s else "https://") + url
def gradient_colors(nb_colors, color_start=None, color_end=None): """Produce a color gradient.""" if color_start is None: color_start = [1, 0, 0] if color_end is None: color_end = [0, 0, 1] # start at black, finish at white gradient = [color_start] # If only one color, return bla...
def make_ternary_dict(x, y): """Create a dictionary of location pairs and resulting values. :param x: A list of 2- or 3-element lists noting independant parameters :type x: list :param y: A 1-D list of values mapping to the position list :type x: list :returns: dict -- the dictionary to...
def _get_text_recursively(text_entry) -> str: """ Get the text given a arbitrary object Parameters ---------- text_entry : any A arbitrary object that contains some text Returns ------- str The extracted text """ if text_entry is None: return '' if t...
def composite_colors(first, second): """ Composite two colors together using their given alpha. The first color will be composited on top of the second color. Parameters ---------- first : tuple The rgba tuple of the first color. All values are floats in the range 0.0 - 1.0. s...
def set_debug(amount=1): """ Set the current global debug verbosity level Parameters: amount (int): the new level Returns: int: the new level """ global DEBUG DEBUG = amount return DEBUG
def gen_pred_text(pred_texts, img_info): """Get the predict texts to save Args: pred_texts(list): predict texts img_info(list): the imgs information respectively Returns: list(dict): updated img_info which add predict texts """ for i, instance in enumerate(img_info): ...
def TrimExtraIndent(text_block): """Trim a uniform amount of whitespace off of each line in a string. Compute the minimum indent on all non blank lines and trim that from each, so that the block of text has no extra indentation. Args: text_block: a multiline string Returns: text_block with the comm...
def lon180_2lon360(lon): """ Convert from -180 - 180 to 0 - 360 :param lon: :return: """ return (lon)%360
def djoin (*args): """'dotless' join, for nicer paths.""" from os.path import join i = 0 alen = len (args) while i < alen and (args[i] == '' or args[i] == '.'): i += 1 if i == alen: return '.' return join (*args[i:])
def join_strings(strings, level): """ Define join symbol by level and join strings. :type strings: collections.Iterable[unicode or str] :param strings: strings to join :type level: int :param level: deep level :rtype: unicode :return: joined string """ return (u', ' if...
def add_rollup(raw, tag): """ Returns a buffer that has ' R' appended to all performance report lines in the text buffer raw that are tagged with string tag. """ result = [] for line in raw.split('\n'): words = line.split('[ PERFORMANCE ] ') if len(words) == 2 and words[0] == '' ...
def height2width(bbox, height): """Get optimized width for a given height regarding a known bbox""" x1 = bbox[0] y1 = bbox[1] x2 = bbox[2] y2 = bbox[3] return int(height * (x2 - x1) / (y2 - y1))
def color_string(guess: str, target: str) -> str: """ Returns Wordle colors for guess given target. """ c_string = "" for pos, letter in enumerate(guess): if target[pos] == letter: c_string += "g" elif letter in target: c_string += "y" else: ...
def HeadingStr(heading): """ Gives a heading string given the heading float """ headstr = "?" if heading != None: if heading < 22.5 or heading >= 337.5: headstr = "N" elif heading >=22.5 and heading < 67.5: headstr = "NE" elif heading >= 67.5 and heading < 112.5: headstr = "E" elif heading >= 112....
def sets_to_clusters(sets, idx_to_name): """ Converts a set representation of a partition to a vector of object labels. """ assert len(idx_to_name) == sum([len(a) for a in sets]) arr = [] for i in range(len(idx_to_name)): name = idx_to_name[i] cl = [j for j in range(len(set...
def sfbool(string): """ Parse a string into a boolean value The string "true" regradless of case parses to True. Everything else parses to False. If anything other than a string is passed, an exception (ValueError) is raised. """ return string.lower() == 'true'
def is_valid(s): """ :type s: str :rtype: bool """ pairs = {"(": ")", "{": "}", "[": "]"} match = [] for c in s: if c in pairs.keys(): match.append(pairs[c]) elif not match or c != match.pop(): return False return len(match) == 0
def formatter(data, headers): """Just dump the json data""" data["body"] = f"{data}" return data
def apply_list_offset(lst, offset): """ :param lst: list of values :param offset: value to be added to the list :return: new list with offset applied """ return [i + offset for i in lst]
def samesign(a,b): """ Check if two numbers have the same sign Paramenters --------- a: `float` b: `float` Returns --------- a * b > 0: `bool` True if a and b have the same sign """ return a * b > 0
def permutate(array: list, permutation: list): """ permutate a fixed array with a given permutation list Args: array: An array of random elements permutation: The permutation of the given array Returns: """ _swapped_array = [] _counter = 0 for i in permutation: ...
def format_str_value(value, format_str): """Format value based on format code in field in format id:02d""" if not format_str: return str(value) format_str = "{0:" + f"{format_str}" + "}" return format_str.format(value)
def nth_percentile(values, n=0.95): """Get's the value in values that is closest to the nth percentile. For example, nth_percentile([4, 2, 1, 5], .75) would return 4. """ sorted_vals = sorted(values) ind = int(len(sorted_vals) * n) return sorted_vals[ind]
def mock_purge_success(url, request): """ Mock a success Purge request """ return {'status_code': 201, 'content-type': 'application/json', 'server': 'Apache', 'content-location': '/ccu/v2/purges/1234-456-7890', 'content': { "estimatedSecond...
def create_cubes(n): """returns list of cubes from 0 to n""" result = [] for x in range(n): result.append(x**3) # entire 'result' list in memory (inefficient) return result
def _make_diamond_gradient(X, Y, angle): """Generates index map for diamond gradients.""" import numpy as np theta = np.radians(angle % 360) Z = np.abs(np.cos(theta) * X - np.sin(theta) * Y) + np.abs(np.sin(theta) * X + np.cos(theta) * Y) return Z
def lerp_vector(v1, v2, pct): """ lerps pct percent between v1 and v2 """ comp = 1 - pct return v1[0]*comp+v2[0]*pct,v1[1]*comp+v2[1]*pct,v1[2]*comp+v2[2]*pct
def apply_building_mapping(mapdict, label): """ Applies a building map YAML to a given label, binning it into the appropriate category. """ for category in mapdict: #print(mapdict, category, label) if label in mapdict[category]['labels']: return category return "house"
def get_history_text(workflow_count): """ Given a dictionary of closed workflow executions and their count, get the workflow history text to include in the email body If no workflow_count is supplied, get it from the object time_period in seconds """ history_text = "" # Concatenate the mes...
def noNewLine(str): """ Delete all '\n' and '\r' characters in a string. """ return str.replace('\n', '').replace('\r','')
def green(string: str) -> str: """Add green colour codes to string Args: string (str): Input string Returns: str: Green string """ return "\033[92m" + string + "\033[0m"
def middle_atom(rotors,k): """ Verify if the kth atom is in a rotor and return two appropriate zmat neighbors return its neighbors """ for rot in rotors: if k == rot[1]: return 1, [rot[0],rot[2]] if k == rot[2]: return 1, [rot[1],rot[3]] ...
def build_simc_file(talent_string, covenant_string, profile_name): """Returns output file name based on talent and covenant strings""" if covenant_string: if talent_string: return "profiles/{0}/{1}/{2}.simc".format(talent_string, covenant_string, profile_name) return "profiles/{0}/{1...
def is_wanted_dir(path, files): """ Check if the directory matches required criteria. - It must be in 'target directory' - It should contain files - it shoud contain one of the following in the path: - doc/pod - lib/perl - pan """ if 'target' not in path: ...
def p_a1(npsyns, ninputs): """ Probability of selecting one input given ninputs and npsyns attempts. This uses the intersection operator. @param npsyns: The number of proximal synapses. @param ninputs: The number of inputs. @return: The computed probability. """ return (npsyns + 1.) / ninput...
def get_gpu_share_cfg(k8s_conf): """ Returns GPU share enablement choice :return true/false """ if k8s_conf.get('enable_gpu_share') : return k8s_conf['enable_gpu_share']
def _slowXTextDecode(s, errors=None): """ Decode the xtext-encoded string C{s}. """ r = [] i = 0 while i < len(s): if s[i] == '+': try: r.append(chr(int(s[i + 1:i + 3], 16))) except ValueError: r.append(s[i:i + 3]) i += ...
def cost(dic, PhoneCost, EmailCost, OverbondCost): """Calculates the cost by summing over all connections in the dictionary dic. Note that this time only one of the vertices knows of the connection to avoid redundancy. """ price = [OverbondCost, PhoneCost, EmailCost] result = 0.0 for a...
def process_base64(img_string: str): """ Converts a base64 image string to byte array. Example: "data:image/png;base64,iVBORw0KGgoAAAANSUhE..." becomes b'iVBORw0KGgoAAAANSUhE...' """ # If base64 has metadata attached, get only data after comma if img_string.startswith("data"): im...
def getNewRecordsFromEventObject(event=None): """ This function returns a list of (bucketName, objectKey) tuples extracted from the event object. """ if not event or not event["Records"]: raise ValueError("no Records to process") s3Records = [eventRecord['s3'] for eventRecord in eve...
def _parse_integrator(int_method): """parse the integrator method to pass to C""" #Pick integrator if int_method.lower() == 'rk4_c': int_method_c= 1 elif int_method.lower() == 'rk6_c': int_method_c= 2 elif int_method.lower() == 'symplec4_c': int_method_c= 3 elif int_metho...
def get_class(module: str, *attrs): """cls = get_class("module", "class / static function", "class static function")""" from importlib import import_module cls = import_module(module) for a in attrs: cls = getattr(cls, a) return cls
def convert_to_bool(text): """ Convert a few common variations of "true" and "false" to boolean :param text: string to test :return: boolean :raises: ValueError """ try: return bool(int(text)) except: pass text = str(text).lower() if text == "true": return T...
def concat(l): """concat([[1,2], [3]]) => [1,2,3] Concats a list of lists into a list. """ res = [] for k in l: res.extend(k) return res
def getPdbOccupancy(a): """ return pdb atom occupancy""" try: return float(a[60:67]) except: return 0.0
def intersection(actual, predicted): """ This function computes the intersection between the ground truth list and the predicted list :param actual: list containing ground truths :param predicted: list containing predictions :return : intersection between actual and predicted lists""" return...
def _get_link(name, link, data=None): """ Creates a link header field based on the supplied name, link, and data. If the data is empty, then a link header field with a rel tag and link value are generated. Otherwise, data is considered to contain keys and values representing the available link head...
def lineFunc(x, m, k): """ A line function. Arguments: x: [float] Independant variable. m: [float] Slope. k: [float] Intercept. Return: y: [float] Line evaluation. """ return m*x + k
def state2feature(key): """ :returns: the feature string from the given key :rtype: str """ index = key.find("'") if index < 0: return key else: return key[index+3:]
def parsable(instring): """ Return an easily parsable list of strings from an input string. """ lines = instring lines = lines.replace('\t', ' ') lines = lines.strip() # strips trailing and leading whitespace splitlines = lines.split('\n') # split by newlines splitlines = [' '.join(k.s...
def get_type_str(json): """ Recreates json as str :param json: input json :return: json string. """ type_str = '' if json.get('type') is not None: type_str += json['type'] for key, val in json.items(): if key == 'type': continue if key == 'typedef': ...
def getJ1939ProtocolString(protocol = 1, Baud = "Auto", Channel = None, SampleLocation = 95, SJW = 1, PROP_SEG = 1, PHASE_SEG1 = 2, PHASE_SEG2 = 1, TSEG1 = 2, TSEG2 = 1, SampleTimes = 1) -> bytes: """ Generates fpchProtocol string for Clien...
def min_(string): """ Returns a string stripped of underscores. Parameters ---------- string : str A string containing underscores Returns ------- values: str A string without underscores """ return string.replace('_', '')
def compare(sequenceA, sequenceB, gaps = False): """Compares two sequences and returns the identity. If gaps is set to True then count a shared gap as identical. Args: sequenceA (str): The first sequence. sequenceA (str): The second sequence. gaps (bool): Should gaps count as identical?...
def _underline(string, character="-"): """Convert string to header marks""" return character * len(string)
def get_model_name(name, batch_size, learning_rate, epoch): """ Generate a name for the model consisting of all the hyperparameter values Args: config: Configuration object containing the hyperparameters Returns: path: A string with the hyperparameter name and value concatenated """ ...
def count_significant_bits(input_x: int) -> int: """ Counts the number of significant bits of an integer, ignoring negative signs and leading zeroes. For example, for -0b000110010000, returns 5. """ x = input_x for i in range(x.bit_length()): if x & (1 << i) > 0: return x.bit...
def format_fing(fingerprint): """ Format a fingerprint by capitalizing it and adding spaces every four characters. >>> format_fing('abc123def456ghi789jkl012mno345pqr678stu9') 'ABC1 23DE F456 GHI7 89JK L012 MNO3 45PQ R678 STU9' @type fingerprint: C{string} or C{buffer} @param fingerprint: T...
def convert_to_list(data): """Converts 2d list to a request""" return "?" + "&".join(["{}={}".format(key, value) for key, value in data.items()])
def sln(cost, salvage, life): """ Returns the straight-line depreciation of an asset for one period. """ return (float(cost) - float(salvage)) / float(life)
def host_match(cursor, name, topic=None): """ Check for matches with supplied values 0 - no matches -1 - error n - number of matching rows (should be only 1)""" try: if topic is None: records = cursor.execute('''select count(*) from host_activity where host=? and ...
def capitalize(item): """Return a copy of the string with its first character capitalized and the rest lowercased """ return item.capitalize()
def generate_cat_num_to_artifacts_dict(artifacts_summary=None, artifacts_details=None, append=False): """Make a dict of cat nums to artifacts from a dictionary of artifacts. The artifacts_summary parameter is the result of calling extract_all_of_artifacts_dir. The artifacts_details parameter is the result ...
def FormatYesNo(value): """Returns "Yes" if *value* is True, "No" otherwise. Reverses the transformation defined by :py:func:`ParseYesNo`.""" if value: return u'Yes' else: return u'No'
def arr(num=0): """Function which return a list of n elements""" return [elem for elem in range(num)]
def _validate_name_index_duplication(params): """ Validate for duplicate names and indices. :param params: Ansible list of dict :return: bool or error. """ msg = "" for i in range(len(params) - 1): for j in range(i + 1, len(params)): if params[i]['Name'] == params[j]['Nam...
def get_current_sentence(target, mini): """ (\n| )... min ... """ lfstart = target.rfind("\n", 0, mini) lfend = target.find("\n", mini) if lfend < 0: lfend = len(target) spstart = target.rfind(" ", 0, mini) spend = target.find(" ", mini) if spend < 0: spend = len...
def date_parser(dates): """ This function returns a list of strings where each element in the returned list contains only the date Example ------- Input: ['2019-11-29 12:50:54', '2019-11-29 12:46:53', '2019-11-29 12:46:10'] Output: ['2019-11-29', '2019-...
def set_overlap(source_set, target_set): """Compute the overlap score between a source and a target set. It is the intersection of the two sets, divided by the length of the target set.""" word_overlap = target_set.intersection(source_set) overlap = len(word_overlap) / float(len(target_set)) assert ...
def getjov_gravity(Rp,Mp): """gravity in cgs from radius and mass in the Jovian unit Args: Rp: radius in the unit of Jovian radius Mp: radius in the unit of Jovian mass Returns: gravity (cm/s2) Note: Mpcgs=Mp*const.MJ, Rpcgs=Rp*const.RJ then gravity is given...
def shorten_str(s: str, maxlen: int = 32): """ If `s` is longer than `maxlen`, shorten it to at mos maxlen using `'...'`. """ if len(s) > maxlen: s = s[:maxlen - 3] + "..." return s
def build_reverse_mappings_from_nidb(nidb): """Builds IP reverse mappings from NIDB""" rev_map = { "subnets": {}, "loopbacks": {}, "infra_interfaces": {}, } for node in nidb: if node.broadcast_domain: rev_map["subnets"][str(node.ipv4_subnet)] = no...
def _extract_options(line_part): """Return k/v options found in the part of the line The part of the line looks like k=v,k=v,k=2 .""" result = {} pairs = line_part.split(",") for pair in pairs: if "=" not in pair: continue parts = pair.split("=") key = parts[0].s...
def _reverse64(b): """Converts (a,b) from big to little endian to be consistent with secp256k1""" x = b[:32] y = b[32:] return x[::-1] + y[::-1]
def filter_yellow_square(words:tuple, letter:str, offset:int) -> tuple: """ For example `filter_bad_location(words, 'e', 3)` will return all the words that *do* contain at least one 'e', as long as it is *not* in column 3. """ return tuple( word for word in words if word[offset] != l...
def sort_dict_snapshots(dict_snapshots, times): """ Sort dictionary of snapshots by time :param dict_snapshots: :param times: :return: """ new_dict = {t: dict_snapshots[t] for t in times} return new_dict
def _total_size(shape_values): """Given list of tensor shape values, returns total size. If shape_values contains tensor values (which are results of array_ops.shape), then it returns a scalar tensor. If not, it returns an integer.""" result = 1 for val in shape_values: result *= val return result
def find_locked_exits(room, stuff): """ Given a room, and the player's stuff, find a list of exits that they can use right now. That means the exits must not be hidden, and if they require a key, the player has it. RETURNS - a list of exits that are visible (not hidden) and don't require a key! ...
def command_result_processor_parameter_extra(parameter_values): """ Command result message processor if received extra parameter(s). Parameters ---------- parameter_values : `str` Extra parameters. Returns ------- message : `str` """ message_parts = [] ...
def append_write(filename="", text=""): """ append_write - append a string to a file and return the number of chars """ with open(filename, "a", encoding="utf-8") as f: return f.write(text)
def __get_taxa(rank): """ Return set of taxids with abundance > 0 >>> __get_taxa(query_rank) {123} :param rank: Set of taxids of specific rank :return: list of taxids """ return set(k for k, v in rank.items() if v > 0)
def dot_bracket(pair_list, len_seq): """convert the list of BPs into a dot bracket notation """ str_struct = list("."*len_seq) for pi, pj in pair_list: str_struct[pi], str_struct[pj] = "(", ")" return "".join(str_struct)
def part1(instructions): """ >>> part1([0, 3, 0, 1, -3]) 5 >>> part1(read_input()) 318883 """ size = len(instructions) index = 0 count = 0 while 0 <= index < size: jump = instructions[index] instructions[index] += 1 index += jump count += 1 ...
def decode_integer(value): """ Decode from binary and return the integer value as a string """ return str(int(value, 2))
def _make_nested_padding(pad_shape, pad_token): """Create nested lists of pad_token of shape pad_shape.""" result = [pad_token] for dimension in reversed(pad_shape): result = [result * dimension] return result[0]
def brewery_location(brewery): """Takes an untappd brewery response and returns a location string""" brewery_loca = [] if "brewery_city" in brewery["location"]: if brewery["location"]["brewery_city"]: brewery_loca.append(brewery["location"]["brewery_city"]) if "brewery_state" in bre...
def any_value_except(mapping, excluded_keys): """Return a random value from a dict that is not associated with excluded_key. Raises StopIteration if there are no other keys than excluded_key""" return next(mapping[key] for key in mapping if key not in excluded_keys)
def get_reference_output_files(reference_files_dict: dict, file_type: str) -> list: """ Returns list of files matching a file_type from reference files Args: reference_files_dict: A validated dict model from reference file_type: a file type string, e.g. vcf, fasta...
def dec_to_bin_slow(n): """ Manually transform a decimal number to its binary representation. Parameters ---------- n: int Number in base 10 """ res = '' if n < 0: raise ValueError if n == 0: return '0' while n > 0: res = str(n % 2) + res n = n...