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def uniquify(seq): """ Returns the unique elements of a sequence ``seq``. """ #from http://stackoverflow.com/a/480227/1205799 seen = set() seen_add = seen.add return [ x for x in seq if x not in seen and not seen_add(x)]
def preprocess(data_dict): """ Preprocess data to use in json file, for instance change strings to floats or integers for calculations. Keyword arguments: data_dict -- a dictionar containing the raw data from the input file. Outputs a dictionary which is preprocessed and ready to be written to...
def basis_function_one(degree, knot_vector, span, knot): """ Computes the value of a basis function for a single parameter. Implementation of Algorithm 2.4 from The NURBS Book by Piegl & Tiller. :param degree: degree, :math:`p` :type degree: int :param knot_vector: knot vector :type knot_vecto...
def read_line(line, key=' '): """Split line according to key Return list of strings""" str_list = [] str_line = line.split(key) for el in str_line: if "\n" in el: el = el.split('\n')[0] if not el == '': str_list.append(el) return str_list
def reverse_inputs_if_required(inputs, condition): """ Very simple function to reverse a list if requested, but used so frequently during spreadsheet writing that worth having. Args: inputs: A list of the inputs condition: Boolean for whether to reverse or not Returns: The l...
def total_value(metric): """Given a time series of values, sum the values""" total = 0 for i in metric: total += i return total
def getSound(t, sound, sr=44100, fps=24): """ Get part of the sound. :param t: float - time of the part :param sound: 1D array - sound data source :param sr: int - sample rate (total sample per second) :param fps: int - long of the sound part result is 1/fps """ end = t * sr start = end - (sr / fps) ...
def be_to_str(data: bytes) -> str: """Convert bencoded data from bytes to string""" result = [] for num in data: if num < 32 or num in [34, 91, 92, 93] or num > 126: result.append("[%0.2x]" % num) else: result.append(chr(num)) return "".join(result)
def rejoin_all_final_data(final_data, final_filtered_data): """ Takes two dictionaries of final data, one clean and the other filtered, and rejoins them, but with a boolean flag to denote those that have been flagged. :param dict final_data: final data as {'comp': (dates, mrs), 'comp2': (dates, mrs)} ...
def find_markdown_path(line: str): """Parse the given string for the path in a markdown image tag""" path = '' open_paren_count = 0 for char in line: if char == '(': open_paren_count += 1 if char == ')': open_paren_count -= 1 if open_paren_count > 0: ...
def make_team(li, n): """takes in list of participants length 2-5, outputs formatted match(es)""" match = {"team_1": [li[0]], "team_2": [li[1]]} output = {f'match_{n}': match} if len(li) == 2: return output match["team_1"].append(li[2]) if len(li) == 3: return output if len(l...
def list_reverse2(list_in): """ :param list_in list: :return list_out list : Takes a list a returns a new list that is the reverse of the input """ list_out = [] length = len(list_in) for part in range(length): list_out.append(list_in[length - 1 - part]) return list_out
def format_dict(dict_to_format): """ Function that formats the passed dictionary and returns a string :param dict_to_format: A dict you want to format :return: String of the keys and values in the dict formatted :rtype: str """ str_to_rtn = "\n-----------------\n" if not dict_to_f...
def find_by_key(target: str, data: dict) -> str: """ Returns the value of the target key from a nested Python dictionary. """ for key, value in data.items(): if isinstance(value, dict): return find_by_key(target, value) elif key == target: return value return ...
def hasEmpty(listofElems): """ Check if given list contains any empty """ for i in listofElems: if i == "": return True return False
def build_everything_else_cell(cell_num, surface_num, comment): """Create a cell which encompasses everything outside an assembly/core.""" cell_card = "{} 0 {} imp:n=0 {}".format(cell_num, surface_num, comment) assert (len(cell_card) - len(comment)) < 80 return cell_card
def globs(test): """ Return the globals for *test*, which can be a `doctest` or a regular `unittest.TestCase`. """ try: return test.globs except AttributeError: return test.__dict__
def rev_comp(s): """A simple reverse complement implementation working on strings Args: s (string): a DNA sequence (IUPAC, can be ambiguous) Returns: list: reverse complement of the input sequence """ bases = { "a": "t", "c": "g", "g": "c", "t": "a", "y": "r", "r": "y", "w"...
def is_unique2(s): """ Use a list and the int of the character will tell if that character has already appeared once """ d = [] for t in s: if d[int(t)]: return False d[int(t)] = True return True
def prefer_end_of_sorted_list(mb): """When all eles fails, prefer the end of the sorted list.""" for aa in mb: aa.sort() mb.sort() return [mb[-1]]
def get_data_field(thing_description, data_field_list): """Get the field specified by 'data_field_list' from each thing description Args: data_field_list(list): list of str that specified the hierarchical field names For example, if the parameter value is ['foo', 'bar', 'foobar'], then this...
def _construct_key(previous_key, separator, new_key): """ Returns the new_key if no previous key exists, otherwise concatenates previous key, separator, and new_key :param previous_key: :param separator: :param new_key: :return: a string if previous_key exists and simply passes through the ...
def GenerateNextInRange(range, prev=None): """Generates next value in range. Args: range: dict, A range descriptor: {start: Value, stop: Value, opt step: Value} prev: int or float or None, A previous value or None. Returns: int or float, Random value. """ start = range['start'] if prev is...
def factors(n): """ """ da_factors = [] for f in [f for f in range(1, int(n**0.5) + 1) if n % f == 0]: da_factors.extend([f, n//f]) return set(da_factors)
def conv_c2f(c): """ Convert Celsius to Fahrenheit :param c: Temperature in Celsius :type c: float :return: Temperature in Fahrenheit :rtype: float :Example: >>> import hygrometry >>> hygrometry.conv_c2f(21.111128) 70.0000304 """ return c*1.8+32.0
def _to_yaml_tags(wrapped, instance, args, kwargs): """ New in v17 public decorator for yaml generator """ return wrapped(*args, **kwargs)
def eformat(f, prec, exp_digits): """ reformats wavelength into scientific notation in meters :param f: wavelength float :param prec: precision :param exp_digits: number of digits in the exponent :return: """ s = "%.*e" % (prec, f) mantissa, exp = s.split('e') # add 1 to digits ...
def path_downward(start, end, path=None): """ Returns a list of paths (if they exist) from an ancestor (start) to a descentdant (end). :param start: The individual at the start of the path :param end: The individual to be found :path: a path to append to :returns: A list of individuals...
def _join_and_groups(items): """ "-OR-" items separate the items that have to be grouped with an "AND" clause This function groups items from a same "AND group" with commas """ indexes = [k for k, v in enumerate(items) if v == '-OR-'] next_group = 0 groups = [] for i in indexes: ...
def next(some_list, current_index): """ Returns the next element of the list using the current index if it exists. Otherwise returns an empty string. """ try: return some_list[int(current_index) + 1] # access the next element except Exception: return ''
def temperature_converter(f_temp): """ >>> temperature_converter(32) 0.0 """ celsius_temp = (f_temp-32)*5/9 return celsius_temp
def vertical_move(t, v_speed=2/320): """Probe moves vertically at v_speed [cm/s]""" return 0.*t, 0*t, v_speed*t
def get_component_name(obj): """ Return the human-readable name of the class of `obj`. Document the type of a config field and can be used as a Union value in a json config. """ if obj is type(None): return None if not hasattr(obj, "__module__"): # builtins retur...
def anagram_iter(s1, s2): """Anagram by iteration. Time complexity: O(n^2). Space complexity: O(n). """ if len(s1) != len(s2): return False # Make list of s2 for search memoization. l2 = list(s2) for c1 in s1: is_found = False for i2, c2 in enumerate(s2): ...
def get_inverse_annotation(regions): """ Get a data structure similar to `regions`, however with the inverse regions defined. Assume that counting starts on 1. """ regions_inverse = {} for id, region in regions.items(): regions_inverse[id] = [] start = 1 for i in region: ...
def build_url_parameters_for_change_list_filtering(queryset, field_key_pairs): """ Builds a URL query of key-value pairs for each field of the form: .. code-block:: xml <field>=<value>,...,<value> (i.e. 'UserID=1,2,3') """ query = '?' for f in field_key_pairs: values = [str(v) ...
def SceneMatch(comp): """ Summary : This functions compares a list to scene with typo handling Parameters : comparison list Return : Boolean """ for item in comp: try: item = item.lower() except: continue if item == 'scen...
def zero(m, n): """ Create zero matrix of dimension m,n :param m: integer :param n: integer >>> zero(5, 3) [[0, 0, 0], [0, 0, 0], [0, 0, 0], [0, 0, 0], [0, 0, 0]] """ new_matrix = [[0 for row in range(n)] for col in range(m)] # @UnusedVariable return new_matrix
def first_missing_positive(nums): """ :type nums: List[int] :rtype: int Basic idea: 1. for any array whose length is l, the first missing positive must be in range [1,...,l+1], so we only have to care about those elements in this range and remove the rest. 2. we can use the array index ...
def merge_tupls(tupl1, tupl2): """ Takes two tuples and returns a new tuple of their min and max, assumes range (low,high) Parameters: tupl1, tupl2 - a tuple range """ return (min(tupl1[0],tupl2[0]),max(tupl1[1],tupl2[1]))
def is_int(s): """return True or False if input string is integer or not.""" try: int(s) return True except (ValueError, TypeError): return False
def channel_name(channel): """Get IRC channel name. :channel: channel name without # :returns: channel name with # """ return "#%s" % channel if not channel.startswith('#') else channel
def string_to_number(x): """Suppose you want to determine whether an arbitrary text string can be converted to a number. Write a function that uses a try/except clause to solve this problem. Can you think of another way to solve this problem?""" try: return int(x) except ValueError as e: ...
def cpufy(tensor_iter): """ Takes a list of tensors and safely pushes them back onto the cpu""" return [_.cpu() for _ in tensor_iter]
def merge_dicts(*dict_args): """Merge given dicts into a new dict. Examples:: >>> merge_dicts({"a": 1, "b": 2}, {"c": 3, "b": 20}, {"d": 4}) {'a': 1, 'b': 20, 'c': 3, 'd': 4} """ result = {} for dictionary in dict_args: result.update(dictionary) return result
def gcd(x, y): """ Question 22.1: Find the greatest common divisor of two numbers without using multiplication, division, or the modulus operator :return: """ if x == y: return x elif not (x & 1) and not (y & 1): # x even, y even return gcd(x >> 1, y >> 1) << 1 ...
def _get_graph_act_qubits(graph): """Get all acted qubits.""" nodes = set() for node in graph: nodes |= set(node) nodes = list(nodes) return sorted(nodes)
def binary_to_decimal(binarybits): """ Convert binary bits to decimal""" # helps during list access decimal = int(binarybits, 2) return decimal
def minimal_community(community_owner): """Minimal community data as dict coming from the external world.""" return { "id": "comm_id", "access": { "visibility": "public", }, "metadata": { "title": "Title", "type": "topic" } }
def in_tcltk_website(text): """Receives the tcltk website text string and returns the range where the colors are written.""" start = text.find('<PRE>') + len('<PRE>') end = text.find('</PRE>') colors = text[start:end] return colors
def get_bits_from_int(val_int, val_size=16): """Get the list of bits of val_int integer (default size is 16 bits) Return bits list, least significant bit first. Use list.reverse() if need. :param val_int: integer value :type val_int: int :param val_size: bit size of integer...
def recursive_tuple(data): """Convert nested lists/dicts into tuples for structural comparing""" if isinstance(data, (list, tuple)): return tuple(recursive_tuple(x) for x in data) elif isinstance(data, dict): # We cannot use plain tuple(sorted(...)) here, because while it works giving us sta...
def _str(value): """Returns the value formatted as a string""" if value == 0: return '-' else: return r'{}\%'.format(value)
def pyfuncstring_to_tex(pyfuncstr): """ Placeholder - we'd like to fill this out later. This should be a function that takes a short string representing a python funciton and translates it to latex. e.g. pyfuncstring_to_text 'x**1.5/4' -> x^{1.5}/4 :param pyfuncstr: A string representing a p...
def ccw(a, b, c): """Tests whether the turn formed by A, B, and C is ccw""" return (b[0] - a[0]) * (c[1] - a[1]) > (b[1] - a[1]) * (c[0] - a[0])
def monomial_divides(A, B): """ Does there exist a monomial X such that XA == B? >>> from sympy.polys.monomialtools import monomial_divides >>> monomial_divides((1, 2), (3, 4)) True >>> monomial_divides((1, 2), (0, 2)) False """ return all(a <= b for a, b in zip(A, B))
def transform_bbox_square(bbox, slack=1): """ Transforms a bounding box anchored at top left corner of shape () to a square with edge length being the larger of the bounding box's height or width. Only supports square aspect ratios currently. ## Parameters bbox : {tuple or...
def uint_to_string(uint, both=False): """ Prints uint in readable form """ if both: return hex(uint) + ' (' + repr(uint) + ')' return hex(uint)
def underscore_to_uppercase(dict_to_edit): """ This function convert underscore convention to uppercase convention input: dictionary output: dictionary with uppercase convention """ if not isinstance(dict_to_edit, (dict, list)): return dict_to_edit if isinstance(dict_to_edit, list): ...
def iss(text: str) -> bool: """ :param text: string to test :return: true if text is at lease one non-whitespace character """ if text is None: return False if (len(text) == 0) or (text.strip() == ""): return False return True
def es_subcadena(adn1, adn2): """ (str, str) -> bool Funcion que retorna la subcadena de una cadena >>> es_subcadena('ATCTTA', 'ATC') True >>> es_subcadena('TCGA', 'AAT') False :param adn1: str Primer Cadena :param adn2: str Segunda Cadena :return: Retorna la subcadena de la pri...
def str2bool(v): """From https://github.com/amdegroot/ssd.pytorch""" return v.lower() in ("yes", "true", "t", "1")
def remap(x, in_min, in_max, out_min, out_max): """ Scale x from range [in_min, in_max] to [out_min, out_max] Based on this StackOverflow answer: https://stackoverflow.com/a/43567380/2260 """ return (x - in_min) * (out_max - out_min) / (in_max - in_min) + out_min
def is_filename_char(x): """Return True if x is an acceptable filename character.""" if x.isalnum(): return True if x in ['-', '_']: return True return False
def condition_1(x): """ >>> condition_1('b') False """ if 'be' not in x and 'ba' not in x and 'bu' not in x: return True else: return False
def filter_by_tag(tests,tag): """Return a list of tests filtered by a tag Keyword arguments: tests -- list of tests tag -- the considered tag """ return [x for x in tests if tag in x.get("tags",[])]
def findDuplicate(nums): """ :type nums: List[int] :rtype: int """ set_array = list(set(nums)) if set_array == nums: return None else: sorted_nums = sorted(nums) for x in range(0, len(sorted_nums)): if x <= len(...
def human_size(bytes, units=[' bytes', 'KB', 'MB', 'GB', 'TB', 'PB', 'EB']): """ Returns a human readable string reprentation of bytes""" return str(bytes) + units[0] if bytes < 1024 else human_size(bytes >> 10, units[1:])
def check_enter(user_input): """Accepts no input (= Enter) and skip""" if user_input in ['', 'skip']: return True return False
def get_datetime_string(datetime): """ Given a datetime object, return a human readable string (e.g 05/21/2014 11:12 AM) """ try: if datetime is not None: return datetime.strftime("%m/%d/%Y %I:%M %p") return None except: return None
def division(x,y): """Return result of division""" try: return x/y except ZeroDivisionError: print("Division by zero")
def dict_filter(indict, key_list): """Filter dictionary according to specified keys.""" return dict((key, value) for key, value in list(indict.items()) if key in key_list)
def encode_cookies(string_to_encode: str) -> str: """ Decode the utf-8 string, and encode it to latin-1. Args: string_to_encode: string to encode Returns: str: encoded string """ return string_to_encode.encode('utf-8').decode('latin-1')
def _get_displayed_page_numbers(current, final): """ This utility function determines a list of page numbers to display. This gives us a nice contextually relevant set of page numbers. For example: current=14, final=16 -> [1, None, 13, 14, 15, 16] This implementation gives one page to each side ...
def rot_char(character, n): """Rot-n for a single character""" if character.islower(): return chr(((ord(character)-97+n)%26)+97) elif character.isupper(): return chr(((ord(character)-65+n)%26)+65) else: return character
def normalizeXRI(xri): """Normalize an XRI, stripping its scheme if present""" if xri.startswith("xri://"): xri = xri[6:] return xri
def convert_weight(val, old_scale="kg", new_scale="pound"): """ Convert from a weight scale to another one among kg, gram, and pound. Parameters ---------- val: float or int Value of the weight to be converted expressed in the original scale. old_scale: str Original scale from ...
def j_to_paths(path_list): """ A helper function to retrieve a candidate paths dictionary from JSON. Parameters ---------- path_list : list a list of dictionaries, each representing a JSON path candidate object with from, to, and paths keywords. Returns ...
def get_border(border, size): """ Get border """ i = 1 while size - border // i <= border // i: # size > 2 * (border // i) i *= 2 return border // i
def merge_tuples(*tuples): """ Utility method to merge a number of tuples into a list. To aid output, this also converts numbers into strings for easy output :param tuples: :return: List[String] """ return [str(j) for i in tuples for j in (i if isinstance(i, tuple) else (i,))]
def func1(a): """ This should fail mutation testing (we don't test edge cases of a=5, a=6) >>> func1(4) False >>> func1(8) True """ if a > 5: return True return False
def normalize_value(val): """ Normalize strings with booleans into Python types. """ if val is not None: if val.lower() == 'false': val = False elif val.lower() == 'true': val = True return val
def skip_n_lines_in_file(file_path, num_lines): """ Remove the initial num_lines of text from a file. :param file_path: The path to the file that needs initial lines removed. :param num_lines: The number of initial text lines to remove from the file at file_path. :return: The ...
def normalize_weekly(data): """ Normalization for dining menu data """ if "tblMenu" not in data["result_data"]["Document"]: data["result_data"]["Document"]["tblMenu"] = [] if isinstance(data["result_data"]["Document"]["tblMenu"], dict): data["result_data"]["Document"]["tblMenu"] = [...
def echo(string, newline=True, interpret=False): """ write output given to this command. backslash escapes: these can be given, and will be evaluated. if you want to include a backslash escapped character, escape it with another backslash. (only applies in backslash interpretation mode (-e))""" ...
def factorial(n): """recursive factorial""" if n == 0: return 1 else: return n * factorial(n-1)
def logic(tup, time): """ determines whether an onoff tuple is true by checking with time. v2.00 corrected v2.025 """ st=False if tup==(None, None): return None # v2.034 if tup: # empty tuple means False ontime=tup[0] offtime=tup[1]...
def reverse_cut_n_cards(nb_cards, n, position): """Same as single_cut_n_cards with reversed argument.""" return (position + n) % nb_cards
def beta_word(beta: float) -> str: """Describe a beta Parameters ---------- beta : float The beta for a portfolio Returns ---------- str The description of the beta """ if abs(1 - beta) > 3: part = "extremely " elif abs(1 - beta) > 2: part = "ver...
def get_dynamic_element_keys(data, keys=[], key=None, result=[]): """ get_dynamic_element_keys """ keys_cp = keys.copy() if key is None: result = list() if key is not None and ( isinstance(data, dict) or isinstance(data, list) or isinstance(data, tuple)): keys_cp.append(key...
def kfun(x, s, ksat=7.5): """ Increasing conductivity to the right of the domain """ return ksat + 0.0065*x
def class_repr(value): """Returns a representation of the value class. Arguments --------- value A class or a class instance Returns ------- str The "module.name" representation of the value class. Example ------- >>> from datetime import date >>> class_rep...
def get_greppable(string): """Simply produces a string that -- when grepped -- will omit listing the grep process in a grep listing. """ return string.replace(string[0], '[%s]' % string[0], 1)
def _get_duration_in_seconds(selected_duration): """ Converts hours/minutes to seconds Args: selected_duration (string): String with number followed by unit (e.g. 3 hours, 2 minutes) Returns: int: duration in seconds """ num_time, num_unit = selected_duration.split(' ')...
def startofyear_cps(changepoints, thresh=5): """ Determine whether the person has change points in a given model at the start of a new year, specifically in the first thresh (optional argument) days of the year. """ num_soy_cps = 0 for cp in changepoints: if (cp.month == 1) and (cp.day...
def predict_url(*args): """ Function to make prediction on a URL """ message = 'Not implemented in the model (predict_url)' message = {"Error": message} return message
def staircase(size: int = 0) -> str: """Generates a staircase of '#', ascending to the right Args: size: Width and height of staircase. Returns: A string composed of '#' and ' ', separated by '\n'. When printed to console, renders the following (given 'size' of 5). # ...
def gf_int(a, p): """Coerce `a mod p` to an integer in `[-p/2, p/2]` range. """ if a <= p // 2: return a else: return a - p
def wep_check_all_params_against_set(valid_params: set, request: dict) -> set: """ Check an entire request against a set of valid parameters. :param valid_params: a set of valid parameters :param request: the request object containing zero or more parameters :return: The missing parameters, as a se...
def iob2(tags): """Check that tags have a valid IOB format. Tags in IOB1 format are converted to IOB2. """ for i, tag in enumerate(tags): if tag == "O": continue split = tag.split("-") if len(split) != 2 or split[0] not in ["I", "B"]: return False ...