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def increment_mean(pre_mean, new_data, sample_size): """ Compute incremental mean """ inc_mean = pre_mean + (new_data-pre_mean) / sample_size return inc_mean
def serialize_args(*argnames, **full_args): """ Split positional args from a set of keyword args Args: argnames (List[str]): Names of args to make positional full_args (dict): Keyword arguments dict Returns: Tuple of (positional args list, keyword args dict). """ serial...
def balanced_eq(x, z, y): """Gradient of the max operator with tie breaking. Args: x: The left value z: The maximum of x and y y: The right value Returns: The gradient of the left value i.e. 1 if it is the maximum, 0.5 if they are equal and 0 if it was not the maximum. """ return (x == z...
def _to_latex(string): """Latex-decorate a string.""" return ('$' + string + '$')
def siqs_choose_nf_m(d): """Choose parameters nf (sieve of factor base) and m (for sieving in [-m,m]. """ # Using similar parameters as msieve-1.52 if d <= 34: return 200, 65536 if d <= 36: return 300, 65536 if d <= 38: return 400, 65536 if d <= 40: return...
def mean(values): """Calculate sample mean.""" return sum(values) / len(values)
def get_label_from_directory(directory): """ Function to set the label for each image. In our case, we'll use the file path of a label indicator. Based on your initial data Args: directory: string Returns: int - label Raises: NotImplementedError if unknow...
def read_files(filenames): """ Reads a file line by line Args: filenames : list of str a list of string containing the paths to the files used to learn the embeddings Returns: sents : list of list of str a list containing the words, line per line "...
def api_runner_removal(repo: str) -> str: """Helper function which returns the API endpoint for runner removal. Parameter --------- repo Repository in the format "some_user/repo_name". Returns ------- String containing the full API endpoint to obtain token for runner removal. ...
def md_heading_style_name(level: int) -> str: """Returns the name of the text style used for Markdown headings of the given level.""" assert 1 <= level <= 6 return f"md-h{level}"
def get_access(name): """Get access based on name In Python __var__ refers to a private access _var refers to protected access and var would refer to public access """ assert isinstance(name, str), "Expecting name to be a string" if len(name) > 4 and "__" == name[:2] and "__" == name[-2:]: ...
def truncate_labels(labels, min_doc_count): """ labels is an array of label sets. remove labels that occur in less than min_doc_count documents Sample input: [ ['foo','bar','baz'], ['foo','quux'] ] Sample output (for min_doc_count=2): [ ...
def _eoltype(data): """Guess the EOL type of a file""" if b'\0' in data: # binary return None if b'\r\n' in data: # Windows return b'\r\n' if b'\r' in data: # Old Mac return b'\r' if b'\n' in data: # UNIX return b'\n' return None
def cost_memory_removed_mod( size12, size1, size2, k12, k1, k2, costmod=1, usesizes=True, ): """The default heuristic cost, corresponding to the total reduction in memory of performing a contraction. """ if usesizes: return size12 - costmod * (size1 + size2) return len(k12) - costmod...
def _is_ipy_notebook(node_id: str) -> bool: """ Returns True if node_id is an IPython notebook, otherwise False. """ fpath = node_id.split("::")[0] return fpath.endswith(".ipynb")
def iter_ith( it, item ): """Return i'ith item from iterator""" for i, v in enumerate( it ): if i == item: return v raise IndexError( "iter_ith: iterator does not have item number " + str( item ) )
def maximum_value(maximum_weight, items): """ Find the best solution for the knapsack problem """ _dp = [0 for i in range(maximum_weight + 1)] chosen_items = [[] for i in range(maximum_weight + 1)] for i in range(maximum_weight): for index, item in enumerate(items): if in...
def extent(lst): """Get extent (dimensions object given by lst).""" vecs = zip(*lst) return [max(v) - min(v) for v in vecs]
def imap_helper(args): """ Helper function for imap. This is needed since built-in multiprocessing library does not have `istarmap` function. If packed arguments are passed, it unpacks the arguments and pass through the function. Otherwise, it just pass the argument through the given function. ...
def valid_cmd(cmd: str): """ Returns true if the given command is valid. Valid commads are of the form: ACTION TICKER AMOUNT """ if cmd in ("q" or "quit"): return False tokens = cmd.split(" ") if len(tokens) != 3: print("Incorrect format: require ACTION TICKER AMOUN...
def convert_to_int(byte_arr): """Converts an array of bytes into an array of integers""" result = [] for i in byte_arr: result.append(int.from_bytes(i, byteorder='big')) #introducem termenul liber result.insert(0, 1) # print(result) return result
def precompute_idfs(wglobal, dfs, total_docs): """Pre-compute the inverse document frequency mapping for all terms. Parameters ---------- wglobal : function Custom function for calculating the "global" weighting function. See for example the SMART alternatives under :func:`~gensi...
def _i_get(data, i_map, key): """Get an item from data insensitively. :param data: Data with sensitive keys :type data: Dict :param i_map: Map of lowercase keys to real keys. :type i_map: Dict :param key: Sensitive key :type key: String :returns: Value :rtype: object """ key...
def upper(value): """ returns the uppercase copy of input string. :param str value: string to make uppercase. :rtype: str """ return value.upper()
def _categorizeVector(v): """ Takes X,Y vector v and returns one of r, h, v, or 0 depending on which of X and/or Y are zero, plus tuple of nonzero ones. If both are zero, it returns a single zero still. >>> _categorizeVector((0,0)) ('0', (0,)) >>> _categorizeVector((1,0)) ('h', (1,)) >>> _categorizeVector((0...
def set_low_byte(target, lo_byte): """ Sets the low byte of a 16 bit (or longer) target value (*not* a little endian word!) to lo_byte """ return (target & 0xFF00) + lo_byte
def is_valid_arrangement(arrangement, song): """ Validates an arrangement against a song. Returns True (valid) or False (invalid). Valid means that every setion specified in the arrangement exists in the song's specified sections. :param song: a dictionary conforming to the Song object data model. ...
def common_substring(word1, word2): """ Returns the common substring between word1 and word2 """ ret = "" for a, b in zip(word1, word2): if a == b: ret += a return ret
def unique_data(x, y, doc_ids): """Remove duplicate provisions""" print('Removing duplicate provisions') seen = set([]) uniq_x, uniq_y, uniq_doc_ids = [], [], [] for x_, y_, doc_id in zip(x, y, doc_ids): if not x_ in seen: uniq_x.append(x_) uniq_y.append(y_) ...
def str_to_value(input_str): """ Convert data type of value of dict to appropriate one. Assume there are only three types: str, int, float. """ if input_str.isalpha(): return input_str elif input_str.isdigit(): return int(input_str) else: return float(input_str)
def is_required(param): """ :param param: :return: """ if "?" in param: return False else: return True
def get_matched_midi_md5(msd_id: str, msd_score_matches: dict): """ Returns the MD5 of the matched MIDI from its MSD id. :param msd_id: the MSD id :param msd_score_matches: the MSD score dict, use get_msd_score_matches :return: the matched MIDI MD5 """ max_score = 0 matched_midi_md5 = None for midi_m...
def ternary(value, true_val, false_val): """ value ? true_val : false_val """ if value: return true_val else: return false_val
def _subsequence(s, c): """ Takes as parameter list like object s and returns the length of the longest subsequence of s constituted only by consecutive character 'c's. Example: If the string passed as parameter is "001000111100", and c is '0', then the longest subsequence of only '0's has length 3....
def matrix_divided(matrix, div): """divides all elements of a matrix""" if (matrix == [] or matrix == [[]] or type(matrix) is not list or not all(type(row) is list for row in matrix)): raise TypeError("matrix must be a matrix (list of lists) " ...
def ordered(state): """Returns an ordered version of the state (to improve node pruning).""" sorted_state = sorted(zip(state[::2], state[1::2])) return tuple(item for subl in sorted_state for item in subl)
def _refs(r): """ref function in perl - called when followed by a backslash""" _ref_map = {"<class 'int'>": 'SCALAR', "<class 'str'>": 'SCALAR', "<class 'float'>": 'SCALAR', "<class 'NoneType'>": 'SCALAR', "<class 'list'>": 'ARRAY', "<class 'tuple'>": 'ARRAY', ...
def compress(word): """Return 'a3b2c4' if input is 'aaabbcccc'""" result = [] counter = 0 word = word.lower() last = word[0] for i in word: if last == i: counter += 1 else: result.append(last) result.append(str(...
def calc_assignment_average(assignment_list): """ Function that will take in a list of assignments and return a list of average grades for each assignment """ return [sum(grades)/len(grades) for grades in assignment_list]
def is_power2(num): """Test if number is a power of 2. Parameters ---------- num : int Number. Returns ------- b : bool True if is power of 2. Examples -------- >>> is_power2(2 ** 3) True >>> is_power2(5) False """ num = int(num) return ...
def _cmplx_negate_ ( s ) : """Negation: >>> v = ... >>> v1 = -v """ return -complex ( s )
def shell_sort(to_be_sorted): """ Subquadratic :param to_be_sorted: :return: """ if len(to_be_sorted) < 2: return to_be_sorted gap = len(to_be_sorted) // 2 while gap > 0: for i in range(gap, len(to_be_sorted)): j = i while to_be_sorted[j - gap]...
def format_proxies(proxy_host, proxy_port, proxy_user=None, proxy_password=None): """Sets proxy dict for requests.""" PREFIX_HTTP = 'http://' PREFIX_HTTPS = 'https://' proxies = None if proxy_host and proxy_port: if proxy_host.startswith(PREFIX_HTTP): proxy_host = proxy_host[len(...
def check_cgal_params(max_facet_distance, max_cell_circumradius, voxelsize): """Check CGAL mesher parameters. # https://github.com/nschloe/pygalmesh#volume-meshes-from-surface-meshes Parameters ---------- max_facet_distance max_cell_circumradius voxelsize : float Image voxel size. ...
def windowfy(_value): """ Turn backslashes into forward slashes :param _value: A string value """ return _value.replace("/", "\\")
def expandtabs(s, tabstop=8, ignoring=None): """Expand tab characters `'\\\\t'` into spaces. :param tabstop: number of space characters per tab (defaults to the canonical 8) :param ignoring: if not `None`, the expansion will be "smart" and go from one tabstop to th...
def remove_mongo_date(resources: list) -> list: """Utility function to remove and flatten nested $date properties""" res = [] for document in resources: updated_document = document.copy() for field, value in document.items(): if isinstance(value, dict) and "$date" in value: ...
def spell(t): """Returns spelled representation of time""" units = [(0.000001, 'microsecond', 'microseconds'), (0.001, 'milisecond', 'miliseconds'), (1, 'second', 'seconds'), (60, 'minute', 'minutes'), (60 * 60, 'hour', 'hours'), ] i = 0 a...
def get_eta_params(param_dict): """ Extract and return parameters from dictionary for all forms other than the powerlaw form """ rScale = param_dict['rScale'] rc = param_dict['rc'] etaScale = param_dict['etaScale'] lambdaH = param_dict['lambdaH'] B = param_dict['B'] F = param_di...
def containsNearbyDuplicate(nums, k): """ :type nums: List[int] :type k: int :rtype: bool """ d={} for i in range(len(nums)): if nums[i] in d and i-d[nums[i]] <= k: return True d[nums[i]]=i return False
def check_all_values(base, target, tolerance=1e-15): """ Check the deviation of each element of two data arrays. :param base: usually data arrays :param target: usually data arrays :param tolerance: max allowed deviation :return: boolean, True for pass """ rtn = True # sanity check ...
def group_events(events): """ Groups events by ID, station, instrument and channel code. """ grouped = [] grouped_ids = [] for i, e in enumerate(events): if i in grouped_ids: continue group_tag = e['id'] + e['station'] + e['instrument'] current_group = [e]...
def _get_result_color(time_taken): """Get time taken result color.""" time_taken_ms = time_taken * 1000 if time_taken_ms <= 1000: color = "green" elif time_taken_ms <= 3000: color = "yellow" else: color = "red" return color
def _get_ascii_resolution(numeric_str): """Determines the maximum resolution of an ascii-encoded numerical value Necessary because HPSS logs contain numeric values at different and often-insufficient resolutions. For example, tiny but finite transfers can show up as taking 0.000 seconds, which results...
def bbox_str_to_list(bbox: str): """ Parse the bbox query param and return a list of floats """ bboxList = bbox.split(',') return list(map(float, bboxList))
def dict_deep_overlay(defaults, params): """If defaults and params are both dictionaries, perform deep overlay (use params value for keys defined in params), otherwise use defaults value""" if isinstance(defaults, dict) and isinstance(params, dict): for key in params: defaults[key] =...
def _locations_mirror(x): """ Mirrors the points in a list-of-list-of-...-of-list-of-points. For example: >>> _locations_mirror([[[1, 2], [3, 4]], [5, 6], [7, 8]]) [[[2, 1], [4, 3]], [6, 5], [8, 7]] """ if hasattr(x, '__iter__'): if hasattr(x[0], '__iter__'): return list...
def is_disabled(context, name): """Whether a specific pattern is disabled. The context object might define an inclusion list (includes) or an exclusion list (excludes) A pattern is considered disabled if it's found in the exclusion list or it's not found in the inclusion list and the inclusion list is ...
def multiplicative_inverse(a, b): """ Returns a tuple (r, i, j) such that r = gcd(a, b) = ia + jb """ # r = gcd(a,b) i = multiplicitive inverse of a mod b # or j = multiplicitive inverse of b mod a # Neg return values for i or j are made positive mod b or a respectively # Iterateiv...
def bslice(high, low=None): """ Represents: the bits range [high : low] of some value. If low is not given, represents just [high] (only 1 bit), which is the same as [high : high]. """ if low is None: low = high return slice(low, high + 1)
def _MakeTile(repeated_string): """Make exactly 1Mb tile of the repeated string.""" total_size = 1024*1024 tile = repeated_string * (total_size // len(repeated_string)) tile += repeated_string[:total_size % len(repeated_string)] return tile
def _todo_recordgroup_create_values(coll_id="testcoll", group_id="testgroup", render_type="Text", value_mode="Value_direct", update="Field"): """ Entity values used when creating a group entity """ return ( { 'rdfs:label': "%s %s/_field/%s"%(update, coll_id, grou...
def complement(base: str) -> (str): """ Complement the base with respect to the IUPAC code. :param base: the base to complement :return: the complemented base """ # assert base in IUPAC_BASES if base == 'A': return 'T' elif base == 'T': return 'A' elif base...
def DecrementPatchNumber(version_num, num): """Helper function for `GetLatestVersionURI`. DecrementPatchNumber('68.0.3440.70', 6) => '68.0.3440.64' Args: version_num(string): version number to be decremented num(int): the amount that the patch number need to be reduced Returns: string: decremente...
def tl(lst): """ Returns all but first element from list if it len(list) > 1 """ return lst[1:] if len(lst) > 1 else None
def _replace_none(lst, repl=""): """Auxiliary function to replace None's with another value.""" return ['' if v is None else v for v in lst]
def _parse_units(units): """ Get the units factors regarding the cgs system """ # Get all the physical magnitudes mags = [] pwrs = [] # Sign of the power sign_pwr = 1 val_pwr = 1 # Multiplications symbols mul_signs = [' ', '*'] # Auxiliar units aux_unit = '' ...
def is_power2(num): """ states if a number is a power of two """ return num != 0 and ((num & (num - 1)) == 0)
def insertion_sort(x): """Implementation of Selection sort. Takes integer list as input, returns sorted list. """ print("Starting insertion sort on list:\n", x) iteration = 0 for i in range(1, (len(x))): iteration += 1 print("Selection sort is in interation: ", iteration) ...
def make_col_indicator(index): """Return a carrot indicator at index.""" return '{}^'.format(' ' * index)
def revert(vocab, indices): """revert indices into words""" ivocab = dict((v, k) for k, v in vocab.items()) return [ivocab.get(i, 'UNK') for i in indices]
def pow__mod_c(a, k, c): """computes a^k (mod c), we assume a,k>=1, c > 1 integers""" if (k == 0): return 1 elif (k & 1): return ((a * pow__mod_c(a, k//2, c)**2) % c) else: return ((pow__mod_c(a, k//2, c)**2) % c)
def get_extension(local_file: str) -> str: """Extract the file extension of a file.""" return local_file.rsplit(".", 1)[1].lower()
def concat_dicts(list_of_dicts): """ Concatenate a list of dictionaries together into a single dictionary """ output_dict = list_of_dicts.pop(0) for dictionary in list_of_dicts: output_dict.update(dictionary) return output_dict
def prettify_seconds(seconds): """ Prettifies seconds. Takes number of seconds (int) as input and returns a prettified string. Example: >>> prettify_seconds(342543) '3 days, 23 hours, 9 minutes and 3 seconds' """ if seconds < 0: raise ValueError("negative input not allowed") ...
def get_jel_categories(s): """Return set of jel categories.""" cats = set() try: cats.update([j[0] for j in s["jel"] if j[0].isalpha()]) except TypeError: pass try: cats.update([j[0] for j in s["jel3"] if j[0].isalpha()]) except TypeError: pass return list(cat...
def peel_digits(num): """ Given a positive integer num, peel_digits returns a list filled with the digits eg. given 1984, peel_digits returns the list [1, 9, 8, 4] :param num: an integer to peel into a list of digits :return: A list where each element of the list is a digit from num """ str_...
def is_float(arg): """ Returns True iff arg is a valid float """ if isinstance(arg, float) or isinstance(arg, int): return True try: float(arg) except ValueError: return False return True
def v3_matrix_from_string(matrix_string): """Convert string-based rows of numbers to list of lists. Turning everything into a list comprehension """ return [ [float(n) for n in row_string.split()] for row_string in matrix_string.splitlines() ]
def get_a_plus(chain_exon_class, aa_cesar_sat, aa_block_sat_chain, aa_ex_len): """Mark A+ exons as A+.""" chains = chain_exon_class.keys() to_mark_a_p = [] for chain in chains: c_exon_classes = chain_exon_class[chain] c_cesar_sat = aa_cesar_sat[chain] c_sat_chain = aa_block_sat_c...
def read(filename): """Returns the file content as a string""" f = open(filename) content = f.read() f.close() return content
def has_valueQ(remuneracao_dict): """ Return TRUE if 'remuneracao_dict' has a key like 'valor'. Return FALSE otherwise. """ return any([s.lower().find('valor') != -1 for s in remuneracao_dict.keys()])
def generate(g, n): """Generate a (sub-)group using g as generator in modulus n""" result = [] for i in range(1,n): val = g ** i % n if val != None and val > 0: result.append(val) if val < 2: return result
def expand_iupac(base: str, fill_n: bool=False) -> (str): """ Expand the IUPAC base :param base: the IUPAC base to expand :param fill_n: should we fill N or leave it empty :return: a string with all the primary bases that are encoded by the IUPAC bases """ ...
def increase_by_one(liste, n): """ Parameters ---------- liste : list n : int Returns ------- bool True, if it can continue. False, if not. """ i = 1 liste[-i] += 1 while i <= len(liste) and liste[-i] == n: liste[-i] = 0 i += 1 if (i == l...
def get_default(arr, idx, default_value): """get arr[idx] or return default_value """ try: return arr[idx] except IndexError: return default_value
def format_pci_addr(pci_addr): """Pad a PCI address eg 0:0:1.1 becomes 0000:00:01.1 :param pci_addr: str :return pci_addr: str """ domain, bus, slot_func = pci_addr.split(':') slot, func = slot_func.split('.') return '{}:{}:{}.{}'.format(domain.zfill(4), bus.zfill(2), slot.zfill(2), ...
def check_symmetry_and_dim(number, dim=3): """ check if it is a valid number for the given symmetry Args: number: int dim: 0, 1, 2, 3 """ valid = True msg = 'This is a valid group number' numbers = [56, 75, 80, 230] if dim not in [0, 1, 2, 3]: msg = "invalid...
def optimize_filter(vlan_filter, sep=","): """ Reorder and optimize vlan filter :param vlan_filter: :return: """ def get_part(v): v = v.strip() if "-" in v: v1, v2 = [int(x) for x in v.split("-")] return min(v1, v2), max(v1, v2) else: ...
def format_heading(level, text): """Create a heading of <level> [1, 2 or 3 supported].""" underlining = { 0: '', 1: '=', 2: '-', 3: '~', } return '{}\n{}\n\n'.format(text, underlining[level] * len(text))
def get_raw_text(tag): """ :type tag: Tag :rtype: NoneType or str """ if hasattr(tag, 'text'): text = tag.text if text is None: return None else: text = str(tag) return text
def binarize_labels_nosaic_mnist(labels): """Change labels like even (class 0) vs odd (class 1) numbers """ labels = labels % 2 return labels
def fis_zmf(x:float, a:float, b:float): """Z-shaped Member Function""" m = ((a + b) / 2.0) t = (b - a) if x <= a: return 1.0 if x <= m: t = (x - a) / t return (1.0 - (2.0 * t * t)) if x <= b: t = (b - x) / t return (1.0 - (2.0 * t * t)) return 0.0
def remove_border_spaces(string): """ Strips the whitespace borders of a string. Used inside 'read_config_file' function. """ if type(string) != str: raise TypeError( "Hey, a non-string object was passed to function " "'Remove_border_spaces'!") if string == '': ...
def partition(l, pivot_index): """ Partitions a list at pivot index. Returns a tuple consisting of the sublist before the partition, the pivot, and the sublist after the pivot. """ return (l[:pivot_index], l[pivot_index], l[pivot_index + 1:])
def make_matrix(rows, cols, fill=0.0): """Returns a matrix (list of list of floats) using a default value. :param rows: Number of rows :type rows: int :param cols: Number of columns :type cols: int :param fill: Default value for each element in the matrix :type fill: float """ m...
def align_to_next(number, alignment): """Returns number if number % alignment is 0 or returns the next number such that number % alignment is 0""" if number % alignment == 0: return number return number + alignment - (number % alignment)
def interpolate(x0, y0, x1, y1, x): """Linear interpolation between two values. """ try: y = (y0 * (x1 - x) + y1 * (x - x0)) / (x1 - x0) except ZeroDivisionError as e: print(x1,x0) raise e return y
def parse_request(func): """ get json spec """ data = {} if hasattr(func, 'json'): data = { 'content': { 'application/json': { 'schema': { '$ref': f'#/components/schemas/{func.json}' } ...
def _display_result(field, result): """Accept a field name and a validation result pair Display an error if it exists """ okay, error = result return '' if okay else error(field)