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def get_table_name(line): """Get and return table name from table structure SQL file""" start = line.upper().find('TABLE') + 6 end = line[start:].find(' ', 2) + start name = line[start:end] return name.strip().lower()
def consume_whitespace(s: str, offset): """ This also deals with comments. """ while True: while offset < len(s) and s[offset].isspace(): offset += 1 if offset >= len(s) or s[offset] != ";": break while offset < len(s) and s[offset] not in "\n\r": ...
def _process_vals(vals): """ :param vals: None or a single value in a list of a list >>> _process_vals(None) is None True >>> _process_vals([]) [] >>> _process_vals([0]) 0 >>> _process_vals(["0", "1"]) ['0', '1'] """ if vals is None or not vals: return vals ...
def sunion_empty(ls): """ return empty set if the list of sets (ls) is empty""" try: return set.union(*ls) except TypeError: return set()
def rwrap(some_string): """Wraps a string to be red.""" return "\033[91m%s\033[0m" % some_string
def setdefaultx(dct, key, *values): """ Set dict.default() for first non-None value. """ for value in values: if value is not None: dct.setdefault(key, value) break return dct
def make_bytes(s: str) -> bytes: """Helper function to convert a string of digits into packed bytes. Ignores any characters other than 0 and 1, in particular whitespace. The bits are packed in little-endian order within each byte. """ buf = [] byte = 0 idx = 0 for c in s: if c =...
def exp_duration_handler(inputs): """ Helper method to handle the Short, Intermediate, and Long term options ONLY SHORT TERM IS CURRENTLY ALLOWED ON THE FRONTEND :param inputs: dict :return: float """ class_inputs = {'dermal': {}, 'inhal': {}} type = '_st' if inputs['expDurationTy...
def no_overlap(s1, d1, s2, d2): """ no_overlap(s1, d1, s2, d2) Ensures that task 1 (start time s1 with duration d1) does not overlap with task2 (start time s2 with duration d2) """ return [(s1 + d1 <= s2) | (s2 + d2 <= s1)]
def get_execution_timer_name(exec_uuid: int): """Return the name of the timer used for recording pure execution time.""" return f"{exec_uuid}-execution"
def validateFilename(value): """ Validate filename. """ if 0 == len(value): raise ValueError("Name of SimpleGridDB file must be specified.") try: fin = open(value, "r") except IOError: raise IOError("Spatial database file '{}' not found.".format(value)) return value
def is_tty(stream): # taken from catkin_tools/common.py """Returns True if the given stream is a tty, else False""" return hasattr(stream, 'isatty') and stream.isatty()
def ygel(g): """Calculates the y position for a given amount of gelcoat.""" return 10 + (g - 600) * 1
def pagination_range(total_page, current_num=1, display=5): """Return Page range :param total_page: Total numbers of paginator :param current_num: current display page num :param display: Display as many as [:display:] page In order to display many page num on web like: < 1 2 3 4 5 > """ ...
def list_attr(data, key): """ Fetches a list from a querydict or dict. """ try: return data.getlist(key) except AttributeError: if key not in data: return [] value = data[key] if not isinstance(value, list): value = [value] return value
def trim_and_filter_page(page): """ Use the "FOR THE PRESIDENT ONLY" tags and the start, end of each page to further trim the pages that have text. Not all pages (e.g., "Title Page" and Maps) have these lines, so cannot use to split pages. But, because it is missing from these page types,...
def overlapping(start1, end1, start2, end2): """ >>> overlapping(0, 5, 6, 7) False >>> overlapping(1, 2, 0, 4) True >>> overlapping(5,6,0,5) False """ return not ((start1 <= start2 and start1 <= end2 and end1 <= end2 and end1 <= start2) or (start1 >= start2 and start1...
def parse_mode(mode_data): """ Takes in a mode string and parses out which are to be added and which are to be removed. >>> mode_data = "+ocn-Ct" >>> parse_mode(mode_data) ('ocn', 'Ct') """ add = remove = "" directive = "+" for char in mode_data: if char...
def bullet_wall(data): """ The wall is represented by two coordinates W1 (xw1, yw1) and W2 (xw2, yw2) on a coordinate plane. The bullet flies from point "A" (xa, ya), and the direction of its flight is given by the second point "B" (xb, yb). Determine whether the bullet hits the wall or not if gr...
def mixing_dict(xy, normalized=False): """Returns a dictionary representation of mixing matrix. Parameters ---------- xy : list or container of two-tuples Pairs of (x,y) items. normalized : bool (default=False) Return counts if False or probabilities if True. Returns ------- ...
def get_chain_length(chains, chain_idx, start_gen_idx): """ Get length of the chain with index "chain_idx", starting from (and including) generation "start_gen_idx" to end of chain, or until first empty bin (while excluding empty bin). """ length = 0 for gen_idx, gen in enumerate(chains...
def distance(p1, p0): """euclidean distance """ d = ((p1[0] - p0[0]) ** 2 + (p1[1] - p0[1]) ** 2 + (p1[2] - p0[2]) ** 2) ** 0.5 return d
def parse_fasta(handle): """ Simple fasta parser, returns dict of strings """ output = dict() current_id = None current_seq = [] for line in handle: if line.startswith(">"): if current_id is not None: output[current_id] = ''.join(current_seq) curren...
def leftPadItems(alist): """Add a space to the begining of each string in a given list.""" return [' ' + item for item in alist]
def next_prime(old_prime,values): """ returns the next prime using as the first non-multiple obtained in the within the set of multiples @param: old_prime - prime number values - set of booleans that mark the multiples of 'old_prime' """ for multiple,st...
def noise_removal_w_list(input_text): """Removing noise from text using a list of noise words. :param input_text: Noisy text. :return: Clean text. """ # noise to be removed noise_words = ["is", "a", "this", "..."] # converting sentence into words words = input_text.split() # noise-f...
def _max_order_circular_harmonics(N, max_order): """Compute order of 2D HOA.""" return N // 2 if max_order is None else max_order
def constrain(value, min_val, max_val): """ Constrains value to a specific range. """ if value < min_val: return min_val elif value > max_val: return max_val else: return value
def tic(name=None): """ Returns ------- clock_name : str or None The parameter which was passed as ``name``. Pass it, or the ``name`` directly, to ``toc()`` to get the timing for that particular call to ``tic``. Notes ----- - The ``/PROFILER`` keyword is not implem...
def generate_bn_mat_gamma_0(n, k): """ Defined in the paper eq (24) """ if n == 0: return 0.5 return (2.0 * k * (k + 1) + n * (2 * k + n + 1)) / ((2 * k + n) * (2 * k + n + 2))
def is_bit_set(a, offset): """ Checks whether the offset bit in a is set or not. Returns bool, True if bit in position offset in a is 1 """ return a & (1 << offset) != 0
def is_monic(f): """Check if the homomorphism is monic.""" return len(set(f.keys())) ==\ len(set(f.values()))
def get_column_alphabetical_index_from_zero_indexed_num(col_idx: int) -> str: """Convert zero-index column number to alphabetical base-26 (e.g. 0 -> 'A', 27 -> 'AA'""" num_letters_alphabet = 26 def get_letter_from_zero_indexed_idx(idx: int): ascii_start = 65 return chr(ascii_start + idx) ...
def intToBinaryString(integer : int) -> str: """Convert an integer to a string representing a big endian binary number Parameters ---------- integer : int A positive integer Returns ------- str A string representing a big endian binary number """ rtn = "" while ...
def maybe_tuple(data): """Returns `tuple(data)` if :attr:`data` contains more than 1 elements. Used to wrap `map_func` inputs. """ data = tuple(data) data = data if len(data) > 1 else data[0] return data
def set_override_certificate_errors(override: bool) -> dict: """Enable/disable overriding certificate errors. If enabled, all certificate error events need to be handled by the DevTools client and should be answered with `handleCertificateError` commands. Parameters ---------- override: bool ...
def prime_factorization(n): """ Factorize a number into prime numbers. Not that this has been modified to fit the need of the application """ # Modify a little primes=[] i = 2 while i*i <= n: d = 1 while n % i == 0: d *= i n = n...
def calc_pier_reaction(cur_axle_loc, mod_axle_wt, span1_begin, span1_end, span2_begin, span2_end, num_axles, axle_id, direction): """Calculate the interior pier (floorbeam) reaction. Args: cur_axle_loc (list of floats): current x-coordinate of all axles on span axle_wt (l...
def get_overlap(a, b): """ get overlap between ranges """ return max(0, min(a[1], b[1]) - max(a[0], b[0]))
def _ValidateFeatureOptions(feature_options): """Checks that the feature_options is properly formatted. Args: feature_options (dict): A dictionary mapping feature to its configurations. For example: { 'TouchCrashedComponent': { 'blacklist': ['Internals>Core'], } ...
def news_helper(news) -> dict: """Parsing the results from a database query into a Python dict.""" return { 'id': str(news['_id']), 'title': news['title'], 'link': news['link'], 'image_url': news['image_url'], 'source': news['source'], }
def hex2rgb(value): """Converts a hexadeximal color string to an RGB 3-tuple EXAMPLE ------- >>> hex2rgb('#0000FF') (0, 0, 255) """ value = value.lstrip('#') lv = len(value) return tuple(int(value[i:i+lv//3], 16) for i in range(0, lv, lv//3))
def process_coordinates(result): """ A function read the dictionary contains key: neighborhood value: list of coordinates (latitude, longitude) and reconstruct a new dictionary contains key: neighborhood value: a dictionary contains a list of latitudes and a list of longitudes. Parame...
def fix_tftp_filepath(file_path): """Validate the filepath for the TFTP transfer and verify the source file exists. The TFTP configuration file sets the default TFTP directory, normally /var/lib/tftpboot (the equivalent of in.tftpd -s or --secure flag). Therefore, if the directory is also in the file pa...
def string_to_bool(string: str) -> bool: """Converts a string to a bool""" return string.lower() in ("yes", "y", "true", "t", "yes")
def stringToFields(jobFields): """ Convert a jobState string to a fields array """ jobFields = jobFields.replace('[','').replace(']','') jobFields = jobFields.replace("\'","") rf = jobFields.split(',') fields = [] for f in rf: fields += [f.strip()] return fields
def func_pro_pn_limit(string,bool_repeats=True): """process pn_limit Raw input should be a string 1) '1,p, 2, p, 3:P, 4 - Positive, 5 :N, 6- negative, 7, 8, 9 n' 2) '1p, 2 3, p 4, - , p, 5 ,6n, 7 8 ,, 9 n' 3) '1,2,3,4p, 5,6,7,8,9n' 4) '1-p, 2:p, 3-p, 4p, 5n, 6n, 7-n, 8n, 9n' 5) '...
def writeFragments( outfile_fasta, outfile_index, fragments, mangler, size, write_all = False): """write mangled fragments to outfile in chunks of size. returns remaining chunk. if write_all is True, all of fragments are written and the position of the last posit...
def toUnicode(text): """Converts bytes to unicode.""" if type(text) != str: try: text = str(text, encoding='UTF-8') except UnicodeDecodeError: text = "\n[WARNING] : Failed to decode bytes!\n" except TypeError: text = "\n[WARNING] : Failed to decode byt...
def int_or_none(item): """ Tries to convert ``item`` to :py:func:`int`. If it is not possible, returns ``None``. :param object item: Element to convert into :py:func:`int`. >>> int_or_none(1) ... 1 >>> int_or_none("1") ... 1 >>> int_or_none("smth") ... None """ if isins...
def top_sort(dafsa): """Generates list of nodes in topological sort order.""" incoming = {} def count_incoming(node): """Counts incoming references.""" if node: if id(node) not in incoming: incoming[id(node)] = 1 for child in node[1]: count_incoming(child) else: ...
def group_labels_func(labels, preds, group_keys): """Devide labels and preds into several group according to values in group keys. Args: labels (list): ground truth label list. preds (list): prediction score list. group_keys (list): group key list. Returns: all_labels: labe...
def gc(seq): """ Return the GC content of as an int >>> x = tuple('TTTTTATGGAGGTATTGAGAACGTAAGATGTTTGGATAT') >>> gc(x) 30 """ g = seq.count('G') c = seq.count('C') return int((g + c) / len(seq) * 100)
def _consume_single_get(response_iterator): """Consume a gRPC stream that should contain a single response. The stream will correspond to a ``BatchGetDocuments`` request made for a single document. Args: response_iterator (~google.cloud.exceptions.GrpcRendezvous): A streaming itera...
def zigzag(value: int) -> int: """Zig-zag encode a parameter to turn signed ints into unsigned ints. Zig-zag encoding is required by Geometry commands that require parameters, and the number of parameters will be (number_of_commands * number_of_arguments). For more information about this technique, che...
def _get_user_id_from_access_token(access_token): """ Get user's identifier from the access token claims """ token_user_id = access_token.get("sub") if token_user_id: try: token_user_id = int(token_user_id) except ValueError: # if we can't cast to an int, that...
def get_class_bases(klass): """Getting the base classes excluding the type ``object``""" bases = klass.__bases__ if len(bases) == 1 and bases[0] == object: return [] else: return list(bases)
def happiness_detect(info) : """Checks to see if a smiley is in the message""" for emotion in [":)", ":D", "C:", "=D", "=)", "C=", "(=", "(:" "xD", ":p", ";p", "=p", ":(", "D:", "=(", "D=", "):", ")=", "=C", ":C", ":P"] : if emotion in info["message"] : return True return False
def list_to_string(list): """ Converts list to string. :param list: List to convert. :return: String """ string = "" for a in list: string = string + a + " " return string.strip()
def to_bash_variable(param: str) -> str: """ Convert a command variable in a bash variable """ return param.upper().replace('-', '_')
def get_db_img_name(img_name, processing): """Creates image name given processing type Args: img_name (str): image name processing (str): processing applied Returns: str: Created image name """ img_name, filetype = img_name.split('.') return img_name + processing + "." ...
def get_provenance_record(caption): """Create a provenance record describing the diagnostic data and plot.""" record = { 'caption': caption, 'statistics': ['mean', 'diff'], 'domains': ['global'], 'authors': ['schlund_manuel'], 'references': ['gregory04grl'], 'real...
def snake2camel(text): """Convert snake case to camel case. This assumes the input is valid snake case (if you have some weird hybrid of snake and camel case, for instance, you'd want to do some preprocessing first). Parameters ---------- text: str Snake case string, e.g. vader_sentimen...
def top_n(data, n=2): """ # Arguments data {list}: [0.3,0.1,0.5,0.01] # Returns mask {list}: [2,0] """ index = list(range(len(data))) new_data = list(zip(data,index)) # range # new_data = list(filter(lambda x: x[0]>0 and x[0]<1, new_data)) sorted_new_data = sor...
def serialize_list(items): """Serializes a list of SQLAlchemy Objects, exposing their attributes. :param items - List of Objects that inherit from Mixin :returns List of dictionaries """ if not items or items is None: return [] return [x.to_dict() for x in items]
def minmax (minValue, maxValue, value): """returns the value if it lies in the range [minValue, maxValue], the range borders otherwise""" return max(minValue, min(maxValue, value))
def to_c_type(bit_width): """ Convert a bitwidth to the nearest <stdint.h> type that can hold it. """ if bit_width > 32: return "std::uint64_t" if bit_width > 16: return "std::uint32_t" if bit_width > 8: return "std::uint16_t" if bit_width > 1: return "s...
def selection_sort(some_list): """ https://en.wikipedia.org/wiki/Selection_sort Split the list into a sorted/unsorted portion. Go through the list from left to right, starting with position 0 in the unsorted portion. When we find the minimum element of the unsorted portion, swap it to the end of the sor...
def factorial(n): """Computes factorial. """ f = 1 for i in range(n): f *= i + 1 return f
def phase_increment(f_out, phase_bits, f_clk): """ Calculate the phase increment required to produce the desired frequency. :param f_out: :param phase_bits: :param f_clk: :return: """ return int(f_out * 2**phase_bits / f_clk)
def translate_from_farenheit_to_celsius(farenheit: float) -> float: """ Translate from Farenheit unit to Celsius unit :param farenheit: the value to translate :return: the translated value """ return (farenheit - 32) * 5./9.
def get_date(csl_item): """ Return date in iso-like format, such as: 2019 2019-05 2019-05-01 """ try: return '-'.join(f'{int(x):02d}' for x in csl_item['issued']['date-parts'][0]) except Exception: return None
def fake_query_tsh_sample_rate(tsh_id): """probably gonna be part of more extensive get/fetch or class definition""" if tsh_id == 'tshes-44': return 250.0 else: raise Exception('using fake query/get/fetch -- so only a fake, tshes-44, works')
def comment_string_with_block(string, block_comment): """Return string commented using block comments""" if not string: return string beg, end = block_comment return beg + ' ' + string.replace(beg, '').replace(end, '') + ' ' + end
def get_count_words(text): """Converts from a text to a dict of words -> their count.""" count_words = {} for line in text.splitlines(): for word in line.split(): count_words.setdefault(word, 0) count_words[word] += 1 return count_words
def IndexLstToIndexStr(index): """ IndexLstToIndexStr ================== transform a list into an index element e.g. list named 'a' and index ref is [1,1,2], result is '[1][1][2]' @param index: a flat list of indexes @return: a string """ return str(index)....
def kineticEnergy(I, w): """ variables: K = kinetic energy I = moment of inertia w = magnitude of angular velocity (w_z) """ K = 0.5*I*w**2 return K
def get_dup_applicability_payload(file_token, device_ids=None, group_ids=None, baseline_ids=None): """Returns the DUP applicability JSON payload.""" dup_applicability_payload = {'SingleUpdateReportBaseline': [], 'SingleUpdateReportGroup': [], 'Si...
def which_recovered(recovered_names, all_names): """Produce dictionary of recovered TRUE/FALSE""" recovery_dict = {} for name in all_names: if name in recovered_names: recovery_dict[name] = 'TRUE' else: recovery_dict[name] = 'FALSE' return(recovery_dict)
def _escapeWildCard(klassContent): """ >>> _escapeWildCard('') '' >>> _escapeWildCard(':*') '' >>> _escapeWildCard(':Object') ':Object' """ return klassContent.replace(':*', '')
def enhance(desc, key, value): """Enhances a description text. This allows to enhance a description text with addition key-value information. Before enhancing it checks whether the values are existing or not.""" if value is None: return desc if desc is not None and desc != '': ...
def remove_u(input_string): """ Convert unicode text """ words = input_string.split() words_u = [ (word.encode("unicode-escape")).decode("utf-8", "strict") for word in words ] words_u = [ word_u.split("\\u")[1] if r"\u" in word_u else word_u for word_u in words_u ...
def _normalizePath(path): """Normalize a path by resolving '.' and '..' path elements.""" # Special case for the root path. if path == u'/': return path new_segments = [] prefix = u'' if path.startswith('/'): prefix = u'/' path = path[1:] for segment in path.split(...
def include_file(file_path: str, ignore_py: bool): """Returns whether the given file path should be considered a test file for this execution. file_path -- the path of the file in the tests path ignore_py -- whether files that in in .py should be considered a test file """ return file_path.en...
def chrom_to_number(chrom): """ Converts chromosome based position, such as chr1,chr2 etc, to 1,2 """ return chrom.split('chr')[1]
def Align16(i): """Round up to the nearest multiple of 16. See unit tests.""" return ((i-1) | 15) + 1
def get_commondir(dirlist): """Figure out the common portion/parent (commondir) of all the paths in DIRLIST and return a tuple consisting of commondir, dirlist. If a commondir is found, the dirlist returned is rooted in that commondir. If no commondir is found, dirlist is returned unchanged, and commondir i...
def elementwise_absolute_error(true_val, pred_val): """The absolute error between a single true and predicted value. Parameters ---------- true_val : float True value. pred_val : float Predicted value. Returns ------- residual : float Absolute error, |true_val -...
def v4_add(matrix1, matrix2): """Add corresponding numbers in given 2-D matrices. Removing the variable - row - altogether. """ combined = [] for row1, row2 in zip(matrix1, matrix2): combined.append([ n + m for n, m in zip(row1, row2) ]) return combined
def wrap_angle(angle): """ Helper function to keep angle under 360 """ if angle < 0: return 360 + angle elif angle >= 360: return angle - 360 else: return angle
def split_time(time): """Split time in seconds into hours, minutes, and seconds. Parameters ---------- time : array, shape (n_steps,) Seconds since start Returns ------- hours : array, shape (n_steps,) Hours since start minutes : array, shape (n_steps,) Minutes...
def mel_to_hz(mel): """From Young et al. "The HTK book", Chapter 5.4.""" return 700.0 * (10.0**(mel / 2595.0) - 1.0)
def is_power2(num): """ States if a number is a power of two (Author: A.Polino) """ return num != 0 and ((num & (num - 1)) == 0)
def __get_accuracy(predictor, test_set, evaluate): """Calculates the accuracy of a given classification predictor using the given test set. :param predictor: Predictor to test. :param test_set: Test set to use for testing. :param evaluate: Function that is used to evaluate the predictor. Should ...
def sample(population, k): """Return a *k* length list of unique elements chosen from the population sequence. Used for random sampling without replacement.""" return [population[0]]
def vni_id_is_valid(vni): """Check if the vni id is in acceptable range (between 1 and 2^24) """ if (vni < 1) or (vni > 16777215): return False return True
def calc_supply_age( prev_cs, cs, transferred_value, prev_age_ms, ms_since_prev_block ) -> int: """ Calculate mean supply height in ms from given args. Definitions: - h: height - s(h): circulating supply at h - a(h): mean supply age at h - e(h): coinbase emission for block...
def parse_string_to_list(line): """Parse a line in the csv format into a list of strings""" line = line.replace('\n', ' ') line = line.replace('\r', ' ') return [field.strip() for field in line.split(',') if field.strip()]
def numCreator(a,b,c,d): """convert the random numbers into a 4 digit int""" output =0 output += a*1000 output += b*100 output += c*10 output += d output = int(output) return output
def is_sequence_of_gids(seq): """Checks whether the argument is a potentially valid sequence of GIDs (non-negative integers). Parameters ---------- seq : object Object to check Returns ------- bool: True if object is a potentially valid sequence of GIDs """ ret...