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#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.3636, 0.0227, 0, 0.66, 0, 182, 0, 1, 0, 0, 182, 0, 0 ], [ 2, 0, 0.5682, 0.25, 0, 0.66, 0.5, 903, 0, 1, 0, 0, 0, 0, 9 ], [ 8, 1, 0.4773, 0.0227, 1, 0.26, ...
[ "from ctypes import *", "def setProcName(name):\n \"\"\"Sets the process name, linux only - useful for those programs where you might want to do a killall, but don't want to slaughter all the other python processes. Note that there are multiple mechanisms, and that the given new name can be shortened by differin...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1456, 0.0097, 0, 0.66, 0, 901, 0, 1, 0, 0, 901, 0, 0 ], [ 1, 0, 0.1553, 0.0097, 0, 0.66, 0.1111, 99, 0, 1, 0, 0, 99, 0, 0 ], [ 1, 0, 0.1748, 0.0097, 0, 0....
[ "import multiprocessing as mp", "import multiprocessing.synchronize # To make sure we have all the functionality.", "import types", "import marshal", "import unittest", "def repeat(x):\n \"\"\"A generator that repeats the input forever - can be used with the mp_map function to give data to a function tha...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1923, 0.0128, 0, 0.66, 0, 972, 0, 1, 0, 0, 972, 0, 0 ], [ 14, 0, 0.6282, 0.7564, 0, 0.66, 1, 799, 4, 0, 0, 0, 0, 0, 1 ] ]
[ "from utils.start_cpp import start_cpp", "numpy_util_code = start_cpp() + \"\"\"\n#ifndef NUMPY_UTIL_CODE\n#define NUMPY_UTIL_CODE\n\nfloat & Float1D(PyArrayObject * arr, int index = 0)\n{\n return *(float*)(arr->data + index*arr->strides[0]);\n}" ]
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.2857, 0.0179, 0, 0.66, 0, 192, 0, 1, 0, 0, 192, 0, 0 ], [ 1, 0, 0.3036, 0.0179, 0, 0.66, 0.0385, 905, 0, 1, 0, 0, 905, 0, 0 ], [ 1, 0, 0.3214, 0.0179, 0, ...
[ "import cvarray", "import mp_map", "import prog_bar", "import numpy_help_cpp", "import python_obj_cpp", "import matrix_cpp", "import gamma_cpp", "import setProcName", "import start_cpp", "import make", "import doc_gen", "doc = doc_gen.DocGen('utils', 'Utilities/Miscellaneous', 'Library of misc...
# Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0818, 0.0063, 0, 0.66, 0, 88, 0, 1, 0, 0, 88, 0, 0 ], [ 1, 0, 0.0881, 0.0063, 0, 0.66, 0.0909, 715, 0, 1, 0, 0, 715, 0, 0 ], [ 1, 0, 0.0943, 0.0063, 0, 0....
[ "import unittest", "import random", "import math", "from scipy.special import gammaln, psi, polygamma", "from scipy import weave", "from utils.start_cpp import start_cpp", "gamma_code = start_cpp() + \"\"\"\n#ifndef GAMMA_CODE\n#define GAMMA_CODE\n\n#include <cmath>\n\n// Returns the natural logarithm o...
# -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.5, 0.0333, 0, 0.66, 0, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 1, 0, 0.5333, 0.0333, 0, 0.66, 0.5, 154, 0, 1, 0, 0, 154, 0, 0 ], [ 2, 0, 0.8333, 0.3667, 0, 0.66, ...
[ "import inspect", "import hashlib", "def start_cpp(hash_str = None):\n \"\"\"This method does two things - firstly it adds the correct line numbers to scipy.weave code (Good for debugging) and secondly it can optionaly inserts a hash code of some other code into the code. This latter feature is useful for work...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.2031, 0.0156, 0, 0.66, 0, 509, 0, 1, 0, 0, 509, 0, 0 ], [ 1, 0, 0.2188, 0.0156, 0, 0.66, 0.125, 79, 0, 1, 0, 0, 79, 0, 0 ], [ 1, 0, 0.2344, 0.0156, 0, 0.6...
[ "import sys", "import os.path", "import tempfile", "import shutil", "from distutils.core import setup, Extension", "import distutils.ccompiler", "import distutils.dep_util", "try:\n __default_compiler = distutils.ccompiler.new_compiler()\nexcept:\n __default_compiler = None", " __default_compiler...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0634, 0.0049, 0, 0.66, 0, 291, 0, 1, 0, 0, 291, 0, 0 ], [ 1, 0, 0.0683, 0.0049, 0, 0.66, 0.5, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 3, 0, 0.5439, 0.9171, 0, 0.6...
[ "import pydoc", "import inspect", "class DocGen:\n \"\"\"A helper class that is used to generate documentation for the system. Outputs multiple formats simultaneously, specifically html for local reading with a webbrowser and the markup used by the wiki system on Google code.\"\"\"\n def __init__(self, name, ...
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.3636, 0.0227, 0, 0.66, 0, 182, 0, 1, 0, 0, 182, 0, 0 ], [ 2, 0, 0.5682, 0.25, 0, 0.66, 0.5, 903, 0, 1, 0, 0, 0, 0, 9 ], [ 8, 1, 0.4773, 0.0227, 1, 0.97, ...
[ "from ctypes import *", "def setProcName(name):\n \"\"\"Sets the process name, linux only - useful for those programs where you might want to do a killall, but don't want to slaughter all the other python processes. Note that there are multiple mechanisms, and that the given new name can be shortened by differin...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1456, 0.0097, 0, 0.66, 0, 901, 0, 1, 0, 0, 901, 0, 0 ], [ 1, 0, 0.1553, 0.0097, 0, 0.66, 0.1111, 99, 0, 1, 0, 0, 99, 0, 0 ], [ 1, 0, 0.1748, 0.0097, 0, 0....
[ "import multiprocessing as mp", "import multiprocessing.synchronize # To make sure we have all the functionality.", "import types", "import marshal", "import unittest", "def repeat(x):\n \"\"\"A generator that repeats the input forever - can be used with the mp_map function to give data to a function tha...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1923, 0.0128, 0, 0.66, 0, 972, 0, 1, 0, 0, 972, 0, 0 ], [ 14, 0, 0.6282, 0.7564, 0, 0.66, 1, 799, 4, 0, 0, 0, 0, 0, 1 ] ]
[ "from utils.start_cpp import start_cpp", "numpy_util_code = start_cpp() + \"\"\"\n#ifndef NUMPY_UTIL_CODE\n#define NUMPY_UTIL_CODE\n\nfloat & Float1D(PyArrayObject * arr, int index = 0)\n{\n return *(float*)(arr->data + index*arr->strides[0]);\n}" ]
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.2857, 0.0179, 0, 0.66, 0, 192, 0, 1, 0, 0, 192, 0, 0 ], [ 1, 0, 0.3036, 0.0179, 0, 0.66, 0.0385, 905, 0, 1, 0, 0, 905, 0, 0 ], [ 1, 0, 0.3214, 0.0179, 0, ...
[ "import cvarray", "import mp_map", "import prog_bar", "import numpy_help_cpp", "import python_obj_cpp", "import matrix_cpp", "import gamma_cpp", "import setProcName", "import start_cpp", "import make", "import doc_gen", "doc = doc_gen.DocGen('utils', 'Utilities/Miscellaneous', 'Library of misc...
# Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0818, 0.0063, 0, 0.66, 0, 88, 0, 1, 0, 0, 88, 0, 0 ], [ 1, 0, 0.0881, 0.0063, 0, 0.66, 0.0909, 715, 0, 1, 0, 0, 715, 0, 0 ], [ 1, 0, 0.0943, 0.0063, 0, 0....
[ "import unittest", "import random", "import math", "from scipy.special import gammaln, psi, polygamma", "from scipy import weave", "from utils.start_cpp import start_cpp", "gamma_code = start_cpp() + \"\"\"\n#ifndef GAMMA_CODE\n#define GAMMA_CODE\n\n#include <cmath>\n\n// Returns the natural logarithm o...
# -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.5, 0.0333, 0, 0.66, 0, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 1, 0, 0.5333, 0.0333, 0, 0.66, 0.5, 154, 0, 1, 0, 0, 154, 0, 0 ], [ 2, 0, 0.8333, 0.3667, 0, 0.66, ...
[ "import inspect", "import hashlib", "def start_cpp(hash_str = None):\n \"\"\"This method does two things - firstly it adds the correct line numbers to scipy.weave code (Good for debugging) and secondly it can optionaly inserts a hash code of some other code into the code. This latter feature is useful for work...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.2031, 0.0156, 0, 0.66, 0, 509, 0, 1, 0, 0, 509, 0, 0 ], [ 1, 0, 0.2188, 0.0156, 0, 0.66, 0.125, 79, 0, 1, 0, 0, 79, 0, 0 ], [ 1, 0, 0.2344, 0.0156, 0, 0.6...
[ "import sys", "import os.path", "import tempfile", "import shutil", "from distutils.core import setup, Extension", "import distutils.ccompiler", "import distutils.dep_util", "try:\n __default_compiler = distutils.ccompiler.new_compiler()\nexcept:\n __default_compiler = None", " __default_compiler...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0634, 0.0049, 0, 0.66, 0, 291, 0, 1, 0, 0, 291, 0, 0 ], [ 1, 0, 0.0683, 0.0049, 0, 0.66, 0.5, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 3, 0, 0.5439, 0.9171, 0, 0.6...
[ "import pydoc", "import inspect", "class DocGen:\n \"\"\"A helper class that is used to generate documentation for the system. Outputs multiple formats simultaneously, specifically html for local reading with a webbrowser and the markup used by the wiki system on Google code.\"\"\"\n def __init__(self, name, ...
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.3636, 0.0227, 0, 0.66, 0, 182, 0, 1, 0, 0, 182, 0, 0 ], [ 2, 0, 0.5682, 0.25, 0, 0.66, 0.5, 903, 0, 1, 0, 0, 0, 0, 9 ], [ 8, 1, 0.4773, 0.0227, 1, 0.5, ...
[ "from ctypes import *", "def setProcName(name):\n \"\"\"Sets the process name, linux only - useful for those programs where you might want to do a killall, but don't want to slaughter all the other python processes. Note that there are multiple mechanisms, and that the given new name can be shortened by differin...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1456, 0.0097, 0, 0.66, 0, 901, 0, 1, 0, 0, 901, 0, 0 ], [ 1, 0, 0.1553, 0.0097, 0, 0.66, 0.1111, 99, 0, 1, 0, 0, 99, 0, 0 ], [ 1, 0, 0.1748, 0.0097, 0, 0....
[ "import multiprocessing as mp", "import multiprocessing.synchronize # To make sure we have all the functionality.", "import types", "import marshal", "import unittest", "def repeat(x):\n \"\"\"A generator that repeats the input forever - can be used with the mp_map function to give data to a function tha...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1923, 0.0128, 0, 0.66, 0, 972, 0, 1, 0, 0, 972, 0, 0 ], [ 14, 0, 0.6282, 0.7564, 0, 0.66, 1, 799, 4, 0, 0, 0, 0, 0, 1 ] ]
[ "from utils.start_cpp import start_cpp", "numpy_util_code = start_cpp() + \"\"\"\n#ifndef NUMPY_UTIL_CODE\n#define NUMPY_UTIL_CODE\n\nfloat & Float1D(PyArrayObject * arr, int index = 0)\n{\n return *(float*)(arr->data + index*arr->strides[0]);\n}" ]
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.2857, 0.0179, 0, 0.66, 0, 192, 0, 1, 0, 0, 192, 0, 0 ], [ 1, 0, 0.3036, 0.0179, 0, 0.66, 0.0385, 905, 0, 1, 0, 0, 905, 0, 0 ], [ 1, 0, 0.3214, 0.0179, 0, ...
[ "import cvarray", "import mp_map", "import prog_bar", "import numpy_help_cpp", "import python_obj_cpp", "import matrix_cpp", "import gamma_cpp", "import setProcName", "import start_cpp", "import make", "import doc_gen", "doc = doc_gen.DocGen('utils', 'Utilities/Miscellaneous', 'Library of misc...
# Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0818, 0.0063, 0, 0.66, 0, 88, 0, 1, 0, 0, 88, 0, 0 ], [ 1, 0, 0.0881, 0.0063, 0, 0.66, 0.0909, 715, 0, 1, 0, 0, 715, 0, 0 ], [ 1, 0, 0.0943, 0.0063, 0, 0....
[ "import unittest", "import random", "import math", "from scipy.special import gammaln, psi, polygamma", "from scipy import weave", "from utils.start_cpp import start_cpp", "gamma_code = start_cpp() + \"\"\"\n#ifndef GAMMA_CODE\n#define GAMMA_CODE\n\n#include <cmath>\n\n// Returns the natural logarithm o...
# -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.5, 0.0333, 0, 0.66, 0, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 1, 0, 0.5333, 0.0333, 0, 0.66, 0.5, 154, 0, 1, 0, 0, 154, 0, 0 ], [ 2, 0, 0.8333, 0.3667, 0, 0.66, ...
[ "import inspect", "import hashlib", "def start_cpp(hash_str = None):\n \"\"\"This method does two things - firstly it adds the correct line numbers to scipy.weave code (Good for debugging) and secondly it can optionaly inserts a hash code of some other code into the code. This latter feature is useful for work...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.2031, 0.0156, 0, 0.66, 0, 509, 0, 1, 0, 0, 509, 0, 0 ], [ 1, 0, 0.2188, 0.0156, 0, 0.66, 0.125, 79, 0, 1, 0, 0, 79, 0, 0 ], [ 1, 0, 0.2344, 0.0156, 0, 0.6...
[ "import sys", "import os.path", "import tempfile", "import shutil", "from distutils.core import setup, Extension", "import distutils.ccompiler", "import distutils.dep_util", "try:\n __default_compiler = distutils.ccompiler.new_compiler()\nexcept:\n __default_compiler = None", " __default_compiler...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0634, 0.0049, 0, 0.66, 0, 291, 0, 1, 0, 0, 291, 0, 0 ], [ 1, 0, 0.0683, 0.0049, 0, 0.66, 0.5, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 3, 0, 0.5439, 0.9171, 0, 0.6...
[ "import pydoc", "import inspect", "class DocGen:\n \"\"\"A helper class that is used to generate documentation for the system. Outputs multiple formats simultaneously, specifically html for local reading with a webbrowser and the markup used by the wiki system on Google code.\"\"\"\n def __init__(self, name, ...
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.3636, 0.0227, 0, 0.66, 0, 182, 0, 1, 0, 0, 182, 0, 0 ], [ 2, 0, 0.5682, 0.25, 0, 0.66, 0.5, 903, 0, 1, 0, 0, 0, 0, 9 ], [ 8, 1, 0.4773, 0.0227, 1, 0.92, ...
[ "from ctypes import *", "def setProcName(name):\n \"\"\"Sets the process name, linux only - useful for those programs where you might want to do a killall, but don't want to slaughter all the other python processes. Note that there are multiple mechanisms, and that the given new name can be shortened by differin...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1456, 0.0097, 0, 0.66, 0, 901, 0, 1, 0, 0, 901, 0, 0 ], [ 1, 0, 0.1553, 0.0097, 0, 0.66, 0.1111, 99, 0, 1, 0, 0, 99, 0, 0 ], [ 1, 0, 0.1748, 0.0097, 0, 0....
[ "import multiprocessing as mp", "import multiprocessing.synchronize # To make sure we have all the functionality.", "import types", "import marshal", "import unittest", "def repeat(x):\n \"\"\"A generator that repeats the input forever - can be used with the mp_map function to give data to a function tha...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1923, 0.0128, 0, 0.66, 0, 972, 0, 1, 0, 0, 972, 0, 0 ], [ 14, 0, 0.6282, 0.7564, 0, 0.66, 1, 799, 4, 0, 0, 0, 0, 0, 1 ] ]
[ "from utils.start_cpp import start_cpp", "numpy_util_code = start_cpp() + \"\"\"\n#ifndef NUMPY_UTIL_CODE\n#define NUMPY_UTIL_CODE\n\nfloat & Float1D(PyArrayObject * arr, int index = 0)\n{\n return *(float*)(arr->data + index*arr->strides[0]);\n}" ]
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.2857, 0.0179, 0, 0.66, 0, 192, 0, 1, 0, 0, 192, 0, 0 ], [ 1, 0, 0.3036, 0.0179, 0, 0.66, 0.0385, 905, 0, 1, 0, 0, 905, 0, 0 ], [ 1, 0, 0.3214, 0.0179, 0, ...
[ "import cvarray", "import mp_map", "import prog_bar", "import numpy_help_cpp", "import python_obj_cpp", "import matrix_cpp", "import gamma_cpp", "import setProcName", "import start_cpp", "import make", "import doc_gen", "doc = doc_gen.DocGen('utils', 'Utilities/Miscellaneous', 'Library of misc...
# Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0818, 0.0063, 0, 0.66, 0, 88, 0, 1, 0, 0, 88, 0, 0 ], [ 1, 0, 0.0881, 0.0063, 0, 0.66, 0.0909, 715, 0, 1, 0, 0, 715, 0, 0 ], [ 1, 0, 0.0943, 0.0063, 0, 0....
[ "import unittest", "import random", "import math", "from scipy.special import gammaln, psi, polygamma", "from scipy import weave", "from utils.start_cpp import start_cpp", "gamma_code = start_cpp() + \"\"\"\n#ifndef GAMMA_CODE\n#define GAMMA_CODE\n\n#include <cmath>\n\n// Returns the natural logarithm o...
# -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.5, 0.0333, 0, 0.66, 0, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 1, 0, 0.5333, 0.0333, 0, 0.66, 0.5, 154, 0, 1, 0, 0, 154, 0, 0 ], [ 2, 0, 0.8333, 0.3667, 0, 0.66, ...
[ "import inspect", "import hashlib", "def start_cpp(hash_str = None):\n \"\"\"This method does two things - firstly it adds the correct line numbers to scipy.weave code (Good for debugging) and secondly it can optionaly inserts a hash code of some other code into the code. This latter feature is useful for work...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.2031, 0.0156, 0, 0.66, 0, 509, 0, 1, 0, 0, 509, 0, 0 ], [ 1, 0, 0.2188, 0.0156, 0, 0.66, 0.125, 79, 0, 1, 0, 0, 79, 0, 0 ], [ 1, 0, 0.2344, 0.0156, 0, 0.6...
[ "import sys", "import os.path", "import tempfile", "import shutil", "from distutils.core import setup, Extension", "import distutils.ccompiler", "import distutils.dep_util", "try:\n __default_compiler = distutils.ccompiler.new_compiler()\nexcept:\n __default_compiler = None", " __default_compiler...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0634, 0.0049, 0, 0.66, 0, 291, 0, 1, 0, 0, 291, 0, 0 ], [ 1, 0, 0.0683, 0.0049, 0, 0.66, 0.5, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 3, 0, 0.5439, 0.9171, 0, 0.6...
[ "import pydoc", "import inspect", "class DocGen:\n \"\"\"A helper class that is used to generate documentation for the system. Outputs multiple formats simultaneously, specifically html for local reading with a webbrowser and the markup used by the wiki system on Google code.\"\"\"\n def __init__(self, name, ...
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.3636, 0.0227, 0, 0.66, 0, 182, 0, 1, 0, 0, 182, 0, 0 ], [ 2, 0, 0.5682, 0.25, 0, 0.66, 0.5, 903, 0, 1, 0, 0, 0, 0, 9 ], [ 8, 1, 0.4773, 0.0227, 1, 0.65, ...
[ "from ctypes import *", "def setProcName(name):\n \"\"\"Sets the process name, linux only - useful for those programs where you might want to do a killall, but don't want to slaughter all the other python processes. Note that there are multiple mechanisms, and that the given new name can be shortened by differin...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1456, 0.0097, 0, 0.66, 0, 901, 0, 1, 0, 0, 901, 0, 0 ], [ 1, 0, 0.1553, 0.0097, 0, 0.66, 0.1111, 99, 0, 1, 0, 0, 99, 0, 0 ], [ 1, 0, 0.1748, 0.0097, 0, 0....
[ "import multiprocessing as mp", "import multiprocessing.synchronize # To make sure we have all the functionality.", "import types", "import marshal", "import unittest", "def repeat(x):\n \"\"\"A generator that repeats the input forever - can be used with the mp_map function to give data to a function tha...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1923, 0.0128, 0, 0.66, 0, 972, 0, 1, 0, 0, 972, 0, 0 ], [ 14, 0, 0.6282, 0.7564, 0, 0.66, 1, 799, 4, 0, 0, 0, 0, 0, 1 ] ]
[ "from utils.start_cpp import start_cpp", "numpy_util_code = start_cpp() + \"\"\"\n#ifndef NUMPY_UTIL_CODE\n#define NUMPY_UTIL_CODE\n\nfloat & Float1D(PyArrayObject * arr, int index = 0)\n{\n return *(float*)(arr->data + index*arr->strides[0]);\n}" ]
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.2857, 0.0179, 0, 0.66, 0, 192, 0, 1, 0, 0, 192, 0, 0 ], [ 1, 0, 0.3036, 0.0179, 0, 0.66, 0.0385, 905, 0, 1, 0, 0, 905, 0, 0 ], [ 1, 0, 0.3214, 0.0179, 0, ...
[ "import cvarray", "import mp_map", "import prog_bar", "import numpy_help_cpp", "import python_obj_cpp", "import matrix_cpp", "import gamma_cpp", "import setProcName", "import start_cpp", "import make", "import doc_gen", "doc = doc_gen.DocGen('utils', 'Utilities/Miscellaneous', 'Library of misc...
# Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0818, 0.0063, 0, 0.66, 0, 88, 0, 1, 0, 0, 88, 0, 0 ], [ 1, 0, 0.0881, 0.0063, 0, 0.66, 0.0909, 715, 0, 1, 0, 0, 715, 0, 0 ], [ 1, 0, 0.0943, 0.0063, 0, 0....
[ "import unittest", "import random", "import math", "from scipy.special import gammaln, psi, polygamma", "from scipy import weave", "from utils.start_cpp import start_cpp", "gamma_code = start_cpp() + \"\"\"\n#ifndef GAMMA_CODE\n#define GAMMA_CODE\n\n#include <cmath>\n\n// Returns the natural logarithm o...
# -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.5, 0.0333, 0, 0.66, 0, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 1, 0, 0.5333, 0.0333, 0, 0.66, 0.5, 154, 0, 1, 0, 0, 154, 0, 0 ], [ 2, 0, 0.8333, 0.3667, 0, 0.66, ...
[ "import inspect", "import hashlib", "def start_cpp(hash_str = None):\n \"\"\"This method does two things - firstly it adds the correct line numbers to scipy.weave code (Good for debugging) and secondly it can optionaly inserts a hash code of some other code into the code. This latter feature is useful for work...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.2031, 0.0156, 0, 0.66, 0, 509, 0, 1, 0, 0, 509, 0, 0 ], [ 1, 0, 0.2188, 0.0156, 0, 0.66, 0.125, 79, 0, 1, 0, 0, 79, 0, 0 ], [ 1, 0, 0.2344, 0.0156, 0, 0.6...
[ "import sys", "import os.path", "import tempfile", "import shutil", "from distutils.core import setup, Extension", "import distutils.ccompiler", "import distutils.dep_util", "try:\n __default_compiler = distutils.ccompiler.new_compiler()\nexcept:\n __default_compiler = None", " __default_compiler...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0634, 0.0049, 0, 0.66, 0, 291, 0, 1, 0, 0, 291, 0, 0 ], [ 1, 0, 0.0683, 0.0049, 0, 0.66, 0.5, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 3, 0, 0.5439, 0.9171, 0, 0.6...
[ "import pydoc", "import inspect", "class DocGen:\n \"\"\"A helper class that is used to generate documentation for the system. Outputs multiple formats simultaneously, specifically html for local reading with a webbrowser and the markup used by the wiki system on Google code.\"\"\"\n def __init__(self, name, ...
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.3636, 0.0227, 0, 0.66, 0, 182, 0, 1, 0, 0, 182, 0, 0 ], [ 2, 0, 0.5682, 0.25, 0, 0.66, 0.5, 903, 0, 1, 0, 0, 0, 0, 9 ], [ 8, 1, 0.4773, 0.0227, 1, 0.13, ...
[ "from ctypes import *", "def setProcName(name):\n \"\"\"Sets the process name, linux only - useful for those programs where you might want to do a killall, but don't want to slaughter all the other python processes. Note that there are multiple mechanisms, and that the given new name can be shortened by differin...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1456, 0.0097, 0, 0.66, 0, 901, 0, 1, 0, 0, 901, 0, 0 ], [ 1, 0, 0.1553, 0.0097, 0, 0.66, 0.1111, 99, 0, 1, 0, 0, 99, 0, 0 ], [ 1, 0, 0.1748, 0.0097, 0, 0....
[ "import multiprocessing as mp", "import multiprocessing.synchronize # To make sure we have all the functionality.", "import types", "import marshal", "import unittest", "def repeat(x):\n \"\"\"A generator that repeats the input forever - can be used with the mp_map function to give data to a function tha...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1923, 0.0128, 0, 0.66, 0, 972, 0, 1, 0, 0, 972, 0, 0 ], [ 14, 0, 0.6282, 0.7564, 0, 0.66, 1, 799, 4, 0, 0, 0, 0, 0, 1 ] ]
[ "from utils.start_cpp import start_cpp", "numpy_util_code = start_cpp() + \"\"\"\n#ifndef NUMPY_UTIL_CODE\n#define NUMPY_UTIL_CODE\n\nfloat & Float1D(PyArrayObject * arr, int index = 0)\n{\n return *(float*)(arr->data + index*arr->strides[0]);\n}" ]
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.2857, 0.0179, 0, 0.66, 0, 192, 0, 1, 0, 0, 192, 0, 0 ], [ 1, 0, 0.3036, 0.0179, 0, 0.66, 0.0385, 905, 0, 1, 0, 0, 905, 0, 0 ], [ 1, 0, 0.3214, 0.0179, 0, ...
[ "import cvarray", "import mp_map", "import prog_bar", "import numpy_help_cpp", "import python_obj_cpp", "import matrix_cpp", "import gamma_cpp", "import setProcName", "import start_cpp", "import make", "import doc_gen", "doc = doc_gen.DocGen('utils', 'Utilities/Miscellaneous', 'Library of misc...
# Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0818, 0.0063, 0, 0.66, 0, 88, 0, 1, 0, 0, 88, 0, 0 ], [ 1, 0, 0.0881, 0.0063, 0, 0.66, 0.0909, 715, 0, 1, 0, 0, 715, 0, 0 ], [ 1, 0, 0.0943, 0.0063, 0, 0....
[ "import unittest", "import random", "import math", "from scipy.special import gammaln, psi, polygamma", "from scipy import weave", "from utils.start_cpp import start_cpp", "gamma_code = start_cpp() + \"\"\"\n#ifndef GAMMA_CODE\n#define GAMMA_CODE\n\n#include <cmath>\n\n// Returns the natural logarithm o...
# -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.5, 0.0333, 0, 0.66, 0, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 1, 0, 0.5333, 0.0333, 0, 0.66, 0.5, 154, 0, 1, 0, 0, 154, 0, 0 ], [ 2, 0, 0.8333, 0.3667, 0, 0.66, ...
[ "import inspect", "import hashlib", "def start_cpp(hash_str = None):\n \"\"\"This method does two things - firstly it adds the correct line numbers to scipy.weave code (Good for debugging) and secondly it can optionaly inserts a hash code of some other code into the code. This latter feature is useful for work...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.2031, 0.0156, 0, 0.66, 0, 509, 0, 1, 0, 0, 509, 0, 0 ], [ 1, 0, 0.2188, 0.0156, 0, 0.66, 0.125, 79, 0, 1, 0, 0, 79, 0, 0 ], [ 1, 0, 0.2344, 0.0156, 0, 0.6...
[ "import sys", "import os.path", "import tempfile", "import shutil", "from distutils.core import setup, Extension", "import distutils.ccompiler", "import distutils.dep_util", "try:\n __default_compiler = distutils.ccompiler.new_compiler()\nexcept:\n __default_compiler = None", " __default_compiler...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0634, 0.0049, 0, 0.66, 0, 291, 0, 1, 0, 0, 291, 0, 0 ], [ 1, 0, 0.0683, 0.0049, 0, 0.66, 0.5, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 3, 0, 0.5439, 0.9171, 0, 0.6...
[ "import pydoc", "import inspect", "class DocGen:\n \"\"\"A helper class that is used to generate documentation for the system. Outputs multiple formats simultaneously, specifically html for local reading with a webbrowser and the markup used by the wiki system on Google code.\"\"\"\n def __init__(self, name, ...
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.3636, 0.0227, 0, 0.66, 0, 182, 0, 1, 0, 0, 182, 0, 0 ], [ 2, 0, 0.5682, 0.25, 0, 0.66, 0.5, 903, 0, 1, 0, 0, 0, 0, 9 ], [ 8, 1, 0.4773, 0.0227, 1, 0.92, ...
[ "from ctypes import *", "def setProcName(name):\n \"\"\"Sets the process name, linux only - useful for those programs where you might want to do a killall, but don't want to slaughter all the other python processes. Note that there are multiple mechanisms, and that the given new name can be shortened by differin...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1456, 0.0097, 0, 0.66, 0, 901, 0, 1, 0, 0, 901, 0, 0 ], [ 1, 0, 0.1553, 0.0097, 0, 0.66, 0.1111, 99, 0, 1, 0, 0, 99, 0, 0 ], [ 1, 0, 0.1748, 0.0097, 0, 0....
[ "import multiprocessing as mp", "import multiprocessing.synchronize # To make sure we have all the functionality.", "import types", "import marshal", "import unittest", "def repeat(x):\n \"\"\"A generator that repeats the input forever - can be used with the mp_map function to give data to a function tha...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1923, 0.0128, 0, 0.66, 0, 972, 0, 1, 0, 0, 972, 0, 0 ], [ 14, 0, 0.6282, 0.7564, 0, 0.66, 1, 799, 4, 0, 0, 0, 0, 0, 1 ] ]
[ "from utils.start_cpp import start_cpp", "numpy_util_code = start_cpp() + \"\"\"\n#ifndef NUMPY_UTIL_CODE\n#define NUMPY_UTIL_CODE\n\nfloat & Float1D(PyArrayObject * arr, int index = 0)\n{\n return *(float*)(arr->data + index*arr->strides[0]);\n}" ]
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.2857, 0.0179, 0, 0.66, 0, 192, 0, 1, 0, 0, 192, 0, 0 ], [ 1, 0, 0.3036, 0.0179, 0, 0.66, 0.0385, 905, 0, 1, 0, 0, 905, 0, 0 ], [ 1, 0, 0.3214, 0.0179, 0, ...
[ "import cvarray", "import mp_map", "import prog_bar", "import numpy_help_cpp", "import python_obj_cpp", "import matrix_cpp", "import gamma_cpp", "import setProcName", "import start_cpp", "import make", "import doc_gen", "doc = doc_gen.DocGen('utils', 'Utilities/Miscellaneous', 'Library of misc...
# Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0818, 0.0063, 0, 0.66, 0, 88, 0, 1, 0, 0, 88, 0, 0 ], [ 1, 0, 0.0881, 0.0063, 0, 0.66, 0.0909, 715, 0, 1, 0, 0, 715, 0, 0 ], [ 1, 0, 0.0943, 0.0063, 0, 0....
[ "import unittest", "import random", "import math", "from scipy.special import gammaln, psi, polygamma", "from scipy import weave", "from utils.start_cpp import start_cpp", "gamma_code = start_cpp() + \"\"\"\n#ifndef GAMMA_CODE\n#define GAMMA_CODE\n\n#include <cmath>\n\n// Returns the natural logarithm o...
# -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.5, 0.0333, 0, 0.66, 0, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 1, 0, 0.5333, 0.0333, 0, 0.66, 0.5, 154, 0, 1, 0, 0, 154, 0, 0 ], [ 2, 0, 0.8333, 0.3667, 0, 0.66, ...
[ "import inspect", "import hashlib", "def start_cpp(hash_str = None):\n \"\"\"This method does two things - firstly it adds the correct line numbers to scipy.weave code (Good for debugging) and secondly it can optionaly inserts a hash code of some other code into the code. This latter feature is useful for work...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.2031, 0.0156, 0, 0.66, 0, 509, 0, 1, 0, 0, 509, 0, 0 ], [ 1, 0, 0.2188, 0.0156, 0, 0.66, 0.125, 79, 0, 1, 0, 0, 79, 0, 0 ], [ 1, 0, 0.2344, 0.0156, 0, 0.6...
[ "import sys", "import os.path", "import tempfile", "import shutil", "from distutils.core import setup, Extension", "import distutils.ccompiler", "import distutils.dep_util", "try:\n __default_compiler = distutils.ccompiler.new_compiler()\nexcept:\n __default_compiler = None", " __default_compiler...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0634, 0.0049, 0, 0.66, 0, 291, 0, 1, 0, 0, 291, 0, 0 ], [ 1, 0, 0.0683, 0.0049, 0, 0.66, 0.5, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 3, 0, 0.5439, 0.9171, 0, 0.6...
[ "import pydoc", "import inspect", "class DocGen:\n \"\"\"A helper class that is used to generate documentation for the system. Outputs multiple formats simultaneously, specifically html for local reading with a webbrowser and the markup used by the wiki system on Google code.\"\"\"\n def __init__(self, name, ...
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.3636, 0.0227, 0, 0.66, 0, 182, 0, 1, 0, 0, 182, 0, 0 ], [ 2, 0, 0.5682, 0.25, 0, 0.66, 0.5, 903, 0, 1, 0, 0, 0, 0, 9 ], [ 8, 1, 0.4773, 0.0227, 1, 0.31, ...
[ "from ctypes import *", "def setProcName(name):\n \"\"\"Sets the process name, linux only - useful for those programs where you might want to do a killall, but don't want to slaughter all the other python processes. Note that there are multiple mechanisms, and that the given new name can be shortened by differin...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1456, 0.0097, 0, 0.66, 0, 901, 0, 1, 0, 0, 901, 0, 0 ], [ 1, 0, 0.1553, 0.0097, 0, 0.66, 0.1111, 99, 0, 1, 0, 0, 99, 0, 0 ], [ 1, 0, 0.1748, 0.0097, 0, 0....
[ "import multiprocessing as mp", "import multiprocessing.synchronize # To make sure we have all the functionality.", "import types", "import marshal", "import unittest", "def repeat(x):\n \"\"\"A generator that repeats the input forever - can be used with the mp_map function to give data to a function tha...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1923, 0.0128, 0, 0.66, 0, 972, 0, 1, 0, 0, 972, 0, 0 ], [ 14, 0, 0.6282, 0.7564, 0, 0.66, 1, 799, 4, 0, 0, 0, 0, 0, 1 ] ]
[ "from utils.start_cpp import start_cpp", "numpy_util_code = start_cpp() + \"\"\"\n#ifndef NUMPY_UTIL_CODE\n#define NUMPY_UTIL_CODE\n\nfloat & Float1D(PyArrayObject * arr, int index = 0)\n{\n return *(float*)(arr->data + index*arr->strides[0]);\n}" ]
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.2857, 0.0179, 0, 0.66, 0, 192, 0, 1, 0, 0, 192, 0, 0 ], [ 1, 0, 0.3036, 0.0179, 0, 0.66, 0.0385, 905, 0, 1, 0, 0, 905, 0, 0 ], [ 1, 0, 0.3214, 0.0179, 0, ...
[ "import cvarray", "import mp_map", "import prog_bar", "import numpy_help_cpp", "import python_obj_cpp", "import matrix_cpp", "import gamma_cpp", "import setProcName", "import start_cpp", "import make", "import doc_gen", "doc = doc_gen.DocGen('utils', 'Utilities/Miscellaneous', 'Library of misc...
# Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0818, 0.0063, 0, 0.66, 0, 88, 0, 1, 0, 0, 88, 0, 0 ], [ 1, 0, 0.0881, 0.0063, 0, 0.66, 0.0909, 715, 0, 1, 0, 0, 715, 0, 0 ], [ 1, 0, 0.0943, 0.0063, 0, 0....
[ "import unittest", "import random", "import math", "from scipy.special import gammaln, psi, polygamma", "from scipy import weave", "from utils.start_cpp import start_cpp", "gamma_code = start_cpp() + \"\"\"\n#ifndef GAMMA_CODE\n#define GAMMA_CODE\n\n#include <cmath>\n\n// Returns the natural logarithm o...
# -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.5, 0.0333, 0, 0.66, 0, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 1, 0, 0.5333, 0.0333, 0, 0.66, 0.5, 154, 0, 1, 0, 0, 154, 0, 0 ], [ 2, 0, 0.8333, 0.3667, 0, 0.66, ...
[ "import inspect", "import hashlib", "def start_cpp(hash_str = None):\n \"\"\"This method does two things - firstly it adds the correct line numbers to scipy.weave code (Good for debugging) and secondly it can optionaly inserts a hash code of some other code into the code. This latter feature is useful for work...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.2031, 0.0156, 0, 0.66, 0, 509, 0, 1, 0, 0, 509, 0, 0 ], [ 1, 0, 0.2188, 0.0156, 0, 0.66, 0.125, 79, 0, 1, 0, 0, 79, 0, 0 ], [ 1, 0, 0.2344, 0.0156, 0, 0.6...
[ "import sys", "import os.path", "import tempfile", "import shutil", "from distutils.core import setup, Extension", "import distutils.ccompiler", "import distutils.dep_util", "try:\n __default_compiler = distutils.ccompiler.new_compiler()\nexcept:\n __default_compiler = None", " __default_compiler...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0634, 0.0049, 0, 0.66, 0, 291, 0, 1, 0, 0, 291, 0, 0 ], [ 1, 0, 0.0683, 0.0049, 0, 0.66, 0.5, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 3, 0, 0.5439, 0.9171, 0, 0.6...
[ "import pydoc", "import inspect", "class DocGen:\n \"\"\"A helper class that is used to generate documentation for the system. Outputs multiple formats simultaneously, specifically html for local reading with a webbrowser and the markup used by the wiki system on Google code.\"\"\"\n def __init__(self, name, ...
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.3636, 0.0227, 0, 0.66, 0, 182, 0, 1, 0, 0, 182, 0, 0 ], [ 2, 0, 0.5682, 0.25, 0, 0.66, 0.5, 903, 0, 1, 0, 0, 0, 0, 9 ], [ 8, 1, 0.4773, 0.0227, 1, 0.95, ...
[ "from ctypes import *", "def setProcName(name):\n \"\"\"Sets the process name, linux only - useful for those programs where you might want to do a killall, but don't want to slaughter all the other python processes. Note that there are multiple mechanisms, and that the given new name can be shortened by differin...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1456, 0.0097, 0, 0.66, 0, 901, 0, 1, 0, 0, 901, 0, 0 ], [ 1, 0, 0.1553, 0.0097, 0, 0.66, 0.1111, 99, 0, 1, 0, 0, 99, 0, 0 ], [ 1, 0, 0.1748, 0.0097, 0, 0....
[ "import multiprocessing as mp", "import multiprocessing.synchronize # To make sure we have all the functionality.", "import types", "import marshal", "import unittest", "def repeat(x):\n \"\"\"A generator that repeats the input forever - can be used with the mp_map function to give data to a function tha...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1923, 0.0128, 0, 0.66, 0, 972, 0, 1, 0, 0, 972, 0, 0 ], [ 14, 0, 0.6282, 0.7564, 0, 0.66, 1, 799, 4, 0, 0, 0, 0, 0, 1 ] ]
[ "from utils.start_cpp import start_cpp", "numpy_util_code = start_cpp() + \"\"\"\n#ifndef NUMPY_UTIL_CODE\n#define NUMPY_UTIL_CODE\n\nfloat & Float1D(PyArrayObject * arr, int index = 0)\n{\n return *(float*)(arr->data + index*arr->strides[0]);\n}" ]
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.2857, 0.0179, 0, 0.66, 0, 192, 0, 1, 0, 0, 192, 0, 0 ], [ 1, 0, 0.3036, 0.0179, 0, 0.66, 0.0385, 905, 0, 1, 0, 0, 905, 0, 0 ], [ 1, 0, 0.3214, 0.0179, 0, ...
[ "import cvarray", "import mp_map", "import prog_bar", "import numpy_help_cpp", "import python_obj_cpp", "import matrix_cpp", "import gamma_cpp", "import setProcName", "import start_cpp", "import make", "import doc_gen", "doc = doc_gen.DocGen('utils', 'Utilities/Miscellaneous', 'Library of misc...
# Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0818, 0.0063, 0, 0.66, 0, 88, 0, 1, 0, 0, 88, 0, 0 ], [ 1, 0, 0.0881, 0.0063, 0, 0.66, 0.0909, 715, 0, 1, 0, 0, 715, 0, 0 ], [ 1, 0, 0.0943, 0.0063, 0, 0....
[ "import unittest", "import random", "import math", "from scipy.special import gammaln, psi, polygamma", "from scipy import weave", "from utils.start_cpp import start_cpp", "gamma_code = start_cpp() + \"\"\"\n#ifndef GAMMA_CODE\n#define GAMMA_CODE\n\n#include <cmath>\n\n// Returns the natural logarithm o...
# -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.5, 0.0333, 0, 0.66, 0, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 1, 0, 0.5333, 0.0333, 0, 0.66, 0.5, 154, 0, 1, 0, 0, 154, 0, 0 ], [ 2, 0, 0.8333, 0.3667, 0, 0.66, ...
[ "import inspect", "import hashlib", "def start_cpp(hash_str = None):\n \"\"\"This method does two things - firstly it adds the correct line numbers to scipy.weave code (Good for debugging) and secondly it can optionaly inserts a hash code of some other code into the code. This latter feature is useful for work...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.2031, 0.0156, 0, 0.66, 0, 509, 0, 1, 0, 0, 509, 0, 0 ], [ 1, 0, 0.2188, 0.0156, 0, 0.66, 0.125, 79, 0, 1, 0, 0, 79, 0, 0 ], [ 1, 0, 0.2344, 0.0156, 0, 0.6...
[ "import sys", "import os.path", "import tempfile", "import shutil", "from distutils.core import setup, Extension", "import distutils.ccompiler", "import distutils.dep_util", "try:\n __default_compiler = distutils.ccompiler.new_compiler()\nexcept:\n __default_compiler = None", " __default_compiler...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0634, 0.0049, 0, 0.66, 0, 291, 0, 1, 0, 0, 291, 0, 0 ], [ 1, 0, 0.0683, 0.0049, 0, 0.66, 0.5, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 3, 0, 0.5439, 0.9171, 0, 0.6...
[ "import pydoc", "import inspect", "class DocGen:\n \"\"\"A helper class that is used to generate documentation for the system. Outputs multiple formats simultaneously, specifically html for local reading with a webbrowser and the markup used by the wiki system on Google code.\"\"\"\n def __init__(self, name, ...
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.3636, 0.0227, 0, 0.66, 0, 182, 0, 1, 0, 0, 182, 0, 0 ], [ 2, 0, 0.5682, 0.25, 0, 0.66, 0.5, 903, 0, 1, 0, 0, 0, 0, 9 ], [ 8, 1, 0.4773, 0.0227, 1, 0.61, ...
[ "from ctypes import *", "def setProcName(name):\n \"\"\"Sets the process name, linux only - useful for those programs where you might want to do a killall, but don't want to slaughter all the other python processes. Note that there are multiple mechanisms, and that the given new name can be shortened by differin...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1456, 0.0097, 0, 0.66, 0, 901, 0, 1, 0, 0, 901, 0, 0 ], [ 1, 0, 0.1553, 0.0097, 0, 0.66, 0.1111, 99, 0, 1, 0, 0, 99, 0, 0 ], [ 1, 0, 0.1748, 0.0097, 0, 0....
[ "import multiprocessing as mp", "import multiprocessing.synchronize # To make sure we have all the functionality.", "import types", "import marshal", "import unittest", "def repeat(x):\n \"\"\"A generator that repeats the input forever - can be used with the mp_map function to give data to a function tha...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1923, 0.0128, 0, 0.66, 0, 972, 0, 1, 0, 0, 972, 0, 0 ], [ 14, 0, 0.6282, 0.7564, 0, 0.66, 1, 799, 4, 0, 0, 0, 0, 0, 1 ] ]
[ "from utils.start_cpp import start_cpp", "numpy_util_code = start_cpp() + \"\"\"\n#ifndef NUMPY_UTIL_CODE\n#define NUMPY_UTIL_CODE\n\nfloat & Float1D(PyArrayObject * arr, int index = 0)\n{\n return *(float*)(arr->data + index*arr->strides[0]);\n}" ]
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.2857, 0.0179, 0, 0.66, 0, 192, 0, 1, 0, 0, 192, 0, 0 ], [ 1, 0, 0.3036, 0.0179, 0, 0.66, 0.0385, 905, 0, 1, 0, 0, 905, 0, 0 ], [ 1, 0, 0.3214, 0.0179, 0, ...
[ "import cvarray", "import mp_map", "import prog_bar", "import numpy_help_cpp", "import python_obj_cpp", "import matrix_cpp", "import gamma_cpp", "import setProcName", "import start_cpp", "import make", "import doc_gen", "doc = doc_gen.DocGen('utils', 'Utilities/Miscellaneous', 'Library of misc...
# Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0818, 0.0063, 0, 0.66, 0, 88, 0, 1, 0, 0, 88, 0, 0 ], [ 1, 0, 0.0881, 0.0063, 0, 0.66, 0.0909, 715, 0, 1, 0, 0, 715, 0, 0 ], [ 1, 0, 0.0943, 0.0063, 0, 0....
[ "import unittest", "import random", "import math", "from scipy.special import gammaln, psi, polygamma", "from scipy import weave", "from utils.start_cpp import start_cpp", "gamma_code = start_cpp() + \"\"\"\n#ifndef GAMMA_CODE\n#define GAMMA_CODE\n\n#include <cmath>\n\n// Returns the natural logarithm o...
# -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.5, 0.0333, 0, 0.66, 0, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 1, 0, 0.5333, 0.0333, 0, 0.66, 0.5, 154, 0, 1, 0, 0, 154, 0, 0 ], [ 2, 0, 0.8333, 0.3667, 0, 0.66, ...
[ "import inspect", "import hashlib", "def start_cpp(hash_str = None):\n \"\"\"This method does two things - firstly it adds the correct line numbers to scipy.weave code (Good for debugging) and secondly it can optionaly inserts a hash code of some other code into the code. This latter feature is useful for work...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.2031, 0.0156, 0, 0.66, 0, 509, 0, 1, 0, 0, 509, 0, 0 ], [ 1, 0, 0.2188, 0.0156, 0, 0.66, 0.125, 79, 0, 1, 0, 0, 79, 0, 0 ], [ 1, 0, 0.2344, 0.0156, 0, 0.6...
[ "import sys", "import os.path", "import tempfile", "import shutil", "from distutils.core import setup, Extension", "import distutils.ccompiler", "import distutils.dep_util", "try:\n __default_compiler = distutils.ccompiler.new_compiler()\nexcept:\n __default_compiler = None", " __default_compiler...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0634, 0.0049, 0, 0.66, 0, 291, 0, 1, 0, 0, 291, 0, 0 ], [ 1, 0, 0.0683, 0.0049, 0, 0.66, 0.5, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 3, 0, 0.5439, 0.9171, 0, 0.6...
[ "import pydoc", "import inspect", "class DocGen:\n \"\"\"A helper class that is used to generate documentation for the system. Outputs multiple formats simultaneously, specifically html for local reading with a webbrowser and the markup used by the wiki system on Google code.\"\"\"\n def __init__(self, name, ...
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.3636, 0.0227, 0, 0.66, 0, 182, 0, 1, 0, 0, 182, 0, 0 ], [ 2, 0, 0.5682, 0.25, 0, 0.66, 0.5, 903, 0, 1, 0, 0, 0, 0, 9 ], [ 8, 1, 0.4773, 0.0227, 1, 0.57, ...
[ "from ctypes import *", "def setProcName(name):\n \"\"\"Sets the process name, linux only - useful for those programs where you might want to do a killall, but don't want to slaughter all the other python processes. Note that there are multiple mechanisms, and that the given new name can be shortened by differin...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1456, 0.0097, 0, 0.66, 0, 901, 0, 1, 0, 0, 901, 0, 0 ], [ 1, 0, 0.1553, 0.0097, 0, 0.66, 0.1111, 99, 0, 1, 0, 0, 99, 0, 0 ], [ 1, 0, 0.1748, 0.0097, 0, 0....
[ "import multiprocessing as mp", "import multiprocessing.synchronize # To make sure we have all the functionality.", "import types", "import marshal", "import unittest", "def repeat(x):\n \"\"\"A generator that repeats the input forever - can be used with the mp_map function to give data to a function tha...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1923, 0.0128, 0, 0.66, 0, 972, 0, 1, 0, 0, 972, 0, 0 ], [ 14, 0, 0.6282, 0.7564, 0, 0.66, 1, 799, 4, 0, 0, 0, 0, 0, 1 ] ]
[ "from utils.start_cpp import start_cpp", "numpy_util_code = start_cpp() + \"\"\"\n#ifndef NUMPY_UTIL_CODE\n#define NUMPY_UTIL_CODE\n\nfloat & Float1D(PyArrayObject * arr, int index = 0)\n{\n return *(float*)(arr->data + index*arr->strides[0]);\n}" ]
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.2857, 0.0179, 0, 0.66, 0, 192, 0, 1, 0, 0, 192, 0, 0 ], [ 1, 0, 0.3036, 0.0179, 0, 0.66, 0.0385, 905, 0, 1, 0, 0, 905, 0, 0 ], [ 1, 0, 0.3214, 0.0179, 0, ...
[ "import cvarray", "import mp_map", "import prog_bar", "import numpy_help_cpp", "import python_obj_cpp", "import matrix_cpp", "import gamma_cpp", "import setProcName", "import start_cpp", "import make", "import doc_gen", "doc = doc_gen.DocGen('utils', 'Utilities/Miscellaneous', 'Library of misc...
# Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0818, 0.0063, 0, 0.66, 0, 88, 0, 1, 0, 0, 88, 0, 0 ], [ 1, 0, 0.0881, 0.0063, 0, 0.66, 0.0909, 715, 0, 1, 0, 0, 715, 0, 0 ], [ 1, 0, 0.0943, 0.0063, 0, 0....
[ "import unittest", "import random", "import math", "from scipy.special import gammaln, psi, polygamma", "from scipy import weave", "from utils.start_cpp import start_cpp", "gamma_code = start_cpp() + \"\"\"\n#ifndef GAMMA_CODE\n#define GAMMA_CODE\n\n#include <cmath>\n\n// Returns the natural logarithm o...
# -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.5, 0.0333, 0, 0.66, 0, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 1, 0, 0.5333, 0.0333, 0, 0.66, 0.5, 154, 0, 1, 0, 0, 154, 0, 0 ], [ 2, 0, 0.8333, 0.3667, 0, 0.66, ...
[ "import inspect", "import hashlib", "def start_cpp(hash_str = None):\n \"\"\"This method does two things - firstly it adds the correct line numbers to scipy.weave code (Good for debugging) and secondly it can optionaly inserts a hash code of some other code into the code. This latter feature is useful for work...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.2031, 0.0156, 0, 0.66, 0, 509, 0, 1, 0, 0, 509, 0, 0 ], [ 1, 0, 0.2188, 0.0156, 0, 0.66, 0.125, 79, 0, 1, 0, 0, 79, 0, 0 ], [ 1, 0, 0.2344, 0.0156, 0, 0.6...
[ "import sys", "import os.path", "import tempfile", "import shutil", "from distutils.core import setup, Extension", "import distutils.ccompiler", "import distutils.dep_util", "try:\n __default_compiler = distutils.ccompiler.new_compiler()\nexcept:\n __default_compiler = None", " __default_compiler...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0634, 0.0049, 0, 0.66, 0, 291, 0, 1, 0, 0, 291, 0, 0 ], [ 1, 0, 0.0683, 0.0049, 0, 0.66, 0.5, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 3, 0, 0.5439, 0.9171, 0, 0.6...
[ "import pydoc", "import inspect", "class DocGen:\n \"\"\"A helper class that is used to generate documentation for the system. Outputs multiple formats simultaneously, specifically html for local reading with a webbrowser and the markup used by the wiki system on Google code.\"\"\"\n def __init__(self, name, ...
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.3636, 0.0227, 0, 0.66, 0, 182, 0, 1, 0, 0, 182, 0, 0 ], [ 2, 0, 0.5682, 0.25, 0, 0.66, 0.5, 903, 0, 1, 0, 0, 0, 0, 9 ], [ 8, 1, 0.4773, 0.0227, 1, 0.44, ...
[ "from ctypes import *", "def setProcName(name):\n \"\"\"Sets the process name, linux only - useful for those programs where you might want to do a killall, but don't want to slaughter all the other python processes. Note that there are multiple mechanisms, and that the given new name can be shortened by differin...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1456, 0.0097, 0, 0.66, 0, 901, 0, 1, 0, 0, 901, 0, 0 ], [ 1, 0, 0.1553, 0.0097, 0, 0.66, 0.1111, 99, 0, 1, 0, 0, 99, 0, 0 ], [ 1, 0, 0.1748, 0.0097, 0, 0....
[ "import multiprocessing as mp", "import multiprocessing.synchronize # To make sure we have all the functionality.", "import types", "import marshal", "import unittest", "def repeat(x):\n \"\"\"A generator that repeats the input forever - can be used with the mp_map function to give data to a function tha...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1923, 0.0128, 0, 0.66, 0, 972, 0, 1, 0, 0, 972, 0, 0 ], [ 14, 0, 0.6282, 0.7564, 0, 0.66, 1, 799, 4, 0, 0, 0, 0, 0, 1 ] ]
[ "from utils.start_cpp import start_cpp", "numpy_util_code = start_cpp() + \"\"\"\n#ifndef NUMPY_UTIL_CODE\n#define NUMPY_UTIL_CODE\n\nfloat & Float1D(PyArrayObject * arr, int index = 0)\n{\n return *(float*)(arr->data + index*arr->strides[0]);\n}" ]
# -*- coding: utf-8 -*- # Copyright 2011 Tom SF Haines # Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at # http://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agre...
[ [ 1, 0, 0.0568, 0.0044, 0, 0.66, 0, 526, 0, 1, 0, 0, 526, 0, 0 ], [ 1, 0, 0.0611, 0.0044, 0, 0.66, 0.1429, 954, 0, 1, 0, 0, 954, 0, 0 ], [ 1, 0, 0.0655, 0.0044, 0, ...
[ "import math", "import numpy", "import numpy.linalg", "import numpy.random", "from wishart import Wishart", "from gaussian import Gaussian", "from student_t import StudentT", "class GaussianPrior:\n \"\"\"The conjugate prior for the multivariate Gaussian distribution. Maintains the 4 values and suppo...
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright 2011 Tom SF Haines # Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at # http://www.apache.org/licenses/LICENSE-2.0 # Unless required by...
[ [ 1, 0, 0.4667, 0.0333, 0, 0.66, 0, 884, 0, 1, 0, 0, 884, 0, 0 ], [ 1, 0, 0.5333, 0.0333, 0, 0.66, 0.125, 970, 0, 1, 0, 0, 970, 0, 0 ], [ 14, 0, 0.7, 0.0333, 0, 0.6...
[ "import gcp", "from utils import doc_gen", "doc = doc_gen.DocGen('gcp', 'Gaussian Conjugate Prior', 'Library of distributions focused on the Gaussian and its conjugate prior')", "doc.addFile('readme.txt', 'Overview')", "doc.addClass(gcp.Gaussian)", "doc.addClass(gcp.GaussianInc)", "doc.addClass(gcp.Wish...
# -*- coding: utf-8 -*- # Copyright 2011 Tom SF Haines # Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at # http://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agre...
[ [ 1, 0, 0.7647, 0.0588, 0, 0.66, 0, 78, 0, 1, 0, 0, 78, 0, 0 ], [ 1, 0, 0.8235, 0.0588, 0, 0.66, 0.25, 680, 0, 1, 0, 0, 680, 0, 0 ], [ 1, 0, 0.8824, 0.0588, 0, 0.66...
[ "from gaussian import Gaussian", "from gaussian_inc import GaussianInc", "from wishart import Wishart", "from student_t import StudentT", "from gaussian_prior import GaussianPrior" ]
# -*- coding: utf-8 -*- # Copyright 2011 Tom SF Haines # Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at # http://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agre...
[ [ 1, 0, 0.1287, 0.0099, 0, 0.66, 0, 526, 0, 1, 0, 0, 526, 0, 0 ], [ 1, 0, 0.1386, 0.0099, 0, 0.66, 0.25, 954, 0, 1, 0, 0, 954, 0, 0 ], [ 1, 0, 0.1485, 0.0099, 0, 0....
[ "import math", "import numpy", "import numpy.linalg", "import numpy.random", "class Gaussian:\n \"\"\"A basic multivariate Gaussian class. Has caching to avoid duplicate calculation.\"\"\"\n def __init__(self, dims):\n \"\"\"dims is the number of dimensions. Initialises with mu at the origin and the id...
#! /usr/bin/env python # Copyright 2011 Tom SF Haines # Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at # http://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agree...
[ [ 1, 0, 0.52, 0.04, 0, 0.66, 0, 712, 0, 1, 0, 0, 712, 0, 0 ], [ 1, 0, 0.6, 0.04, 0, 0.66, 0.25, 970, 0, 1, 0, 0, 970, 0, 0 ], [ 14, 0, 0.8, 0.04, 0, 0.66, 0.5, ...
[ "import dpgmm", "from utils import doc_gen", "doc = doc_gen.DocGen('dpgmm', 'Dirichlet Process Gaussian Mixture Model', 'Dynamically resizing Gaussian mixture model')", "doc.addFile('readme.txt', 'Overview')", "doc.addClass(dpgmm.DPGMM)" ]
# -*- coding: utf-8 -*- # Copyright 2010 Tom SF Haines # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation, either version 3 of the License, or # (at your option) any later version. # This program...
[ [ 1, 0, 0.4762, 0.0238, 0, 0.66, 0, 206, 0, 1, 0, 0, 206, 0, 0 ], [ 1, 0, 0.5, 0.0238, 0, 0.66, 0.25, 977, 0, 1, 0, 0, 977, 0, 0 ], [ 1, 0, 0.5238, 0.0238, 0, 0.66,...
[ "from params import Params", "from document import Document", "from corpus import Corpus", "try:\n from solve_weave_mp import fit, fitDoc\n __fitter = 'multiprocess weave'\nexcept:\n try:\n from solve_weave import fit, fitDoc\n __fitter = 'weave'\n except:", " from solve_weave_mp import fit, fitD...
# -*- coding: utf-8 -*- # Copyright 2010 Tom SF Haines # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation, either version 3 of the License, or # (at your option) any later version. # This program...
[ [ 1, 0, 0.0885, 0.0044, 0, 0.66, 0, 251, 0, 1, 0, 0, 251, 0, 0 ], [ 1, 0, 0.0929, 0.0044, 0, 0.66, 0.3333, 954, 0, 1, 0, 0, 954, 0, 0 ], [ 1, 0, 0.0973, 0.0044, 0, ...
[ "import heapq", "import numpy", "import corpus", "class State:\n \"\"\"The state required by the solvers - stored as a few large numpy arrays for conveniance and speed. It is generated from a Corpus, but once generated is stand alone. It includes the ability to split out the final answer into the Corpus, as ...
# -*- coding: utf-8 -*- # Copyright 2010 Tom SF Haines # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation, either version 3 of the License, or # (at your option) any later version. # This program...
[ [ 3, 0, 0.6031, 0.8041, 0, 0.66, 0, 219, 0, 15, 0, 0, 0, 0, 8 ], [ 8, 1, 0.2165, 0.0103, 1, 0.15, 0, 0, 1, 0, 0, 0, 0, 0, 0 ], [ 2, 1, 0.2629, 0.0825, 1, 0.15, ...
[ "class Params:\n \"\"\"Parameters for running the fitter that are universal to all fitters.\"\"\"\n def __init__(self):\n self.runs = 8\n self.samples = 10\n self.burnIn = 1000\n self.lag = 100", " \"\"\"Parameters for running the fitter that are universal to all fitters.\"\"\"", " def __init__(...
# -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.2941, 0.0196, 0, 0.66, 0, 509, 0, 1, 0, 0, 509, 0, 0 ], [ 1, 0, 0.3137, 0.0196, 0, 0.66, 0.5, 654, 0, 1, 0, 0, 654, 0, 0 ], [ 3, 0, 0.6863, 0.6078, 0, 0.6...
[ "import sys", "import time", "class ProgBar:\n \"\"\"Simple console progress bar class. Note that object creation and destruction matter, as they indicate when processing starts and when it stops.\"\"\"\n def __init__(self, width = 60, onCallback = None):\n self.start = time.time()\n self.fill = 0\n ...