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# Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0818, 0.0063, 0, 0.66, 0, 88, 0, 1, 0, 0, 88, 0, 0 ], [ 1, 0, 0.0881, 0.0063, 0, 0.66, 0.0909, 715, 0, 1, 0, 0, 715, 0, 0 ], [ 1, 0, 0.0943, 0.0063, 0, 0....
[ "import unittest", "import random", "import math", "from scipy.special import gammaln, psi, polygamma", "from scipy import weave", "from utils.start_cpp import start_cpp", "gamma_code = start_cpp() + \"\"\"\n#ifndef GAMMA_CODE\n#define GAMMA_CODE\n\n#include <cmath>\n\n// Returns the natural logarithm o...
# -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.5, 0.0333, 0, 0.66, 0, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 1, 0, 0.5333, 0.0333, 0, 0.66, 0.5, 154, 0, 1, 0, 0, 154, 0, 0 ], [ 2, 0, 0.8333, 0.3667, 0, 0.66, ...
[ "import inspect", "import hashlib", "def start_cpp(hash_str = None):\n \"\"\"This method does two things - firstly it adds the correct line numbers to scipy.weave code (Good for debugging) and secondly it can optionaly inserts a hash code of some other code into the code. This latter feature is useful for work...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.2031, 0.0156, 0, 0.66, 0, 509, 0, 1, 0, 0, 509, 0, 0 ], [ 1, 0, 0.2188, 0.0156, 0, 0.66, 0.125, 79, 0, 1, 0, 0, 79, 0, 0 ], [ 1, 0, 0.2344, 0.0156, 0, 0.6...
[ "import sys", "import os.path", "import tempfile", "import shutil", "from distutils.core import setup, Extension", "import distutils.ccompiler", "import distutils.dep_util", "try:\n __default_compiler = distutils.ccompiler.new_compiler()\nexcept:\n __default_compiler = None", " __default_compiler...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0634, 0.0049, 0, 0.66, 0, 291, 0, 1, 0, 0, 291, 0, 0 ], [ 1, 0, 0.0683, 0.0049, 0, 0.66, 0.5, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 3, 0, 0.5439, 0.9171, 0, 0.6...
[ "import pydoc", "import inspect", "class DocGen:\n \"\"\"A helper class that is used to generate documentation for the system. Outputs multiple formats simultaneously, specifically html for local reading with a webbrowser and the markup used by the wiki system on Google code.\"\"\"\n def __init__(self, name, ...
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.3636, 0.0227, 0, 0.66, 0, 182, 0, 1, 0, 0, 182, 0, 0 ], [ 2, 0, 0.5682, 0.25, 0, 0.66, 0.5, 903, 0, 1, 0, 0, 0, 0, 9 ], [ 8, 1, 0.4773, 0.0227, 1, 0.43, ...
[ "from ctypes import *", "def setProcName(name):\n \"\"\"Sets the process name, linux only - useful for those programs where you might want to do a killall, but don't want to slaughter all the other python processes. Note that there are multiple mechanisms, and that the given new name can be shortened by differin...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1456, 0.0097, 0, 0.66, 0, 901, 0, 1, 0, 0, 901, 0, 0 ], [ 1, 0, 0.1553, 0.0097, 0, 0.66, 0.1111, 99, 0, 1, 0, 0, 99, 0, 0 ], [ 1, 0, 0.1748, 0.0097, 0, 0....
[ "import multiprocessing as mp", "import multiprocessing.synchronize # To make sure we have all the functionality.", "import types", "import marshal", "import unittest", "def repeat(x):\n \"\"\"A generator that repeats the input forever - can be used with the mp_map function to give data to a function tha...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1923, 0.0128, 0, 0.66, 0, 972, 0, 1, 0, 0, 972, 0, 0 ], [ 14, 0, 0.6282, 0.7564, 0, 0.66, 1, 799, 4, 0, 0, 0, 0, 0, 1 ] ]
[ "from utils.start_cpp import start_cpp", "numpy_util_code = start_cpp() + \"\"\"\n#ifndef NUMPY_UTIL_CODE\n#define NUMPY_UTIL_CODE\n\nfloat & Float1D(PyArrayObject * arr, int index = 0)\n{\n return *(float*)(arr->data + index*arr->strides[0]);\n}" ]
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.2857, 0.0179, 0, 0.66, 0, 192, 0, 1, 0, 0, 192, 0, 0 ], [ 1, 0, 0.3036, 0.0179, 0, 0.66, 0.0385, 905, 0, 1, 0, 0, 905, 0, 0 ], [ 1, 0, 0.3214, 0.0179, 0, ...
[ "import cvarray", "import mp_map", "import prog_bar", "import numpy_help_cpp", "import python_obj_cpp", "import matrix_cpp", "import gamma_cpp", "import setProcName", "import start_cpp", "import make", "import doc_gen", "doc = doc_gen.DocGen('utils', 'Utilities/Miscellaneous', 'Library of misc...
# Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0818, 0.0063, 0, 0.66, 0, 88, 0, 1, 0, 0, 88, 0, 0 ], [ 1, 0, 0.0881, 0.0063, 0, 0.66, 0.0909, 715, 0, 1, 0, 0, 715, 0, 0 ], [ 1, 0, 0.0943, 0.0063, 0, 0....
[ "import unittest", "import random", "import math", "from scipy.special import gammaln, psi, polygamma", "from scipy import weave", "from utils.start_cpp import start_cpp", "gamma_code = start_cpp() + \"\"\"\n#ifndef GAMMA_CODE\n#define GAMMA_CODE\n\n#include <cmath>\n\n// Returns the natural logarithm o...
# -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.5, 0.0333, 0, 0.66, 0, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 1, 0, 0.5333, 0.0333, 0, 0.66, 0.5, 154, 0, 1, 0, 0, 154, 0, 0 ], [ 2, 0, 0.8333, 0.3667, 0, 0.66, ...
[ "import inspect", "import hashlib", "def start_cpp(hash_str = None):\n \"\"\"This method does two things - firstly it adds the correct line numbers to scipy.weave code (Good for debugging) and secondly it can optionaly inserts a hash code of some other code into the code. This latter feature is useful for work...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.2031, 0.0156, 0, 0.66, 0, 509, 0, 1, 0, 0, 509, 0, 0 ], [ 1, 0, 0.2188, 0.0156, 0, 0.66, 0.125, 79, 0, 1, 0, 0, 79, 0, 0 ], [ 1, 0, 0.2344, 0.0156, 0, 0.6...
[ "import sys", "import os.path", "import tempfile", "import shutil", "from distutils.core import setup, Extension", "import distutils.ccompiler", "import distutils.dep_util", "try:\n __default_compiler = distutils.ccompiler.new_compiler()\nexcept:\n __default_compiler = None", " __default_compiler...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0634, 0.0049, 0, 0.66, 0, 291, 0, 1, 0, 0, 291, 0, 0 ], [ 1, 0, 0.0683, 0.0049, 0, 0.66, 0.5, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 3, 0, 0.5439, 0.9171, 0, 0.6...
[ "import pydoc", "import inspect", "class DocGen:\n \"\"\"A helper class that is used to generate documentation for the system. Outputs multiple formats simultaneously, specifically html for local reading with a webbrowser and the markup used by the wiki system on Google code.\"\"\"\n def __init__(self, name, ...
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.3636, 0.0227, 0, 0.66, 0, 182, 0, 1, 0, 0, 182, 0, 0 ], [ 2, 0, 0.5682, 0.25, 0, 0.66, 0.5, 903, 0, 1, 0, 0, 0, 0, 9 ], [ 8, 1, 0.4773, 0.0227, 1, 0.47, ...
[ "from ctypes import *", "def setProcName(name):\n \"\"\"Sets the process name, linux only - useful for those programs where you might want to do a killall, but don't want to slaughter all the other python processes. Note that there are multiple mechanisms, and that the given new name can be shortened by differin...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1456, 0.0097, 0, 0.66, 0, 901, 0, 1, 0, 0, 901, 0, 0 ], [ 1, 0, 0.1553, 0.0097, 0, 0.66, 0.1111, 99, 0, 1, 0, 0, 99, 0, 0 ], [ 1, 0, 0.1748, 0.0097, 0, 0....
[ "import multiprocessing as mp", "import multiprocessing.synchronize # To make sure we have all the functionality.", "import types", "import marshal", "import unittest", "def repeat(x):\n \"\"\"A generator that repeats the input forever - can be used with the mp_map function to give data to a function tha...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1923, 0.0128, 0, 0.66, 0, 972, 0, 1, 0, 0, 972, 0, 0 ], [ 14, 0, 0.6282, 0.7564, 0, 0.66, 1, 799, 4, 0, 0, 0, 0, 0, 1 ] ]
[ "from utils.start_cpp import start_cpp", "numpy_util_code = start_cpp() + \"\"\"\n#ifndef NUMPY_UTIL_CODE\n#define NUMPY_UTIL_CODE\n\nfloat & Float1D(PyArrayObject * arr, int index = 0)\n{\n return *(float*)(arr->data + index*arr->strides[0]);\n}" ]
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.2857, 0.0179, 0, 0.66, 0, 192, 0, 1, 0, 0, 192, 0, 0 ], [ 1, 0, 0.3036, 0.0179, 0, 0.66, 0.0385, 905, 0, 1, 0, 0, 905, 0, 0 ], [ 1, 0, 0.3214, 0.0179, 0, ...
[ "import cvarray", "import mp_map", "import prog_bar", "import numpy_help_cpp", "import python_obj_cpp", "import matrix_cpp", "import gamma_cpp", "import setProcName", "import start_cpp", "import make", "import doc_gen", "doc = doc_gen.DocGen('utils', 'Utilities/Miscellaneous', 'Library of misc...
# Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0818, 0.0063, 0, 0.66, 0, 88, 0, 1, 0, 0, 88, 0, 0 ], [ 1, 0, 0.0881, 0.0063, 0, 0.66, 0.0909, 715, 0, 1, 0, 0, 715, 0, 0 ], [ 1, 0, 0.0943, 0.0063, 0, 0....
[ "import unittest", "import random", "import math", "from scipy.special import gammaln, psi, polygamma", "from scipy import weave", "from utils.start_cpp import start_cpp", "gamma_code = start_cpp() + \"\"\"\n#ifndef GAMMA_CODE\n#define GAMMA_CODE\n\n#include <cmath>\n\n// Returns the natural logarithm o...
# -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.5, 0.0333, 0, 0.66, 0, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 1, 0, 0.5333, 0.0333, 0, 0.66, 0.5, 154, 0, 1, 0, 0, 154, 0, 0 ], [ 2, 0, 0.8333, 0.3667, 0, 0.66, ...
[ "import inspect", "import hashlib", "def start_cpp(hash_str = None):\n \"\"\"This method does two things - firstly it adds the correct line numbers to scipy.weave code (Good for debugging) and secondly it can optionaly inserts a hash code of some other code into the code. This latter feature is useful for work...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.2031, 0.0156, 0, 0.66, 0, 509, 0, 1, 0, 0, 509, 0, 0 ], [ 1, 0, 0.2188, 0.0156, 0, 0.66, 0.125, 79, 0, 1, 0, 0, 79, 0, 0 ], [ 1, 0, 0.2344, 0.0156, 0, 0.6...
[ "import sys", "import os.path", "import tempfile", "import shutil", "from distutils.core import setup, Extension", "import distutils.ccompiler", "import distutils.dep_util", "try:\n __default_compiler = distutils.ccompiler.new_compiler()\nexcept:\n __default_compiler = None", " __default_compiler...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0634, 0.0049, 0, 0.66, 0, 291, 0, 1, 0, 0, 291, 0, 0 ], [ 1, 0, 0.0683, 0.0049, 0, 0.66, 0.5, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 3, 0, 0.5439, 0.9171, 0, 0.6...
[ "import pydoc", "import inspect", "class DocGen:\n \"\"\"A helper class that is used to generate documentation for the system. Outputs multiple formats simultaneously, specifically html for local reading with a webbrowser and the markup used by the wiki system on Google code.\"\"\"\n def __init__(self, name, ...
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.3636, 0.0227, 0, 0.66, 0, 182, 0, 1, 0, 0, 182, 0, 0 ], [ 2, 0, 0.5682, 0.25, 0, 0.66, 0.5, 903, 0, 1, 0, 0, 0, 0, 9 ], [ 8, 1, 0.4773, 0.0227, 1, 0.63, ...
[ "from ctypes import *", "def setProcName(name):\n \"\"\"Sets the process name, linux only - useful for those programs where you might want to do a killall, but don't want to slaughter all the other python processes. Note that there are multiple mechanisms, and that the given new name can be shortened by differin...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1456, 0.0097, 0, 0.66, 0, 901, 0, 1, 0, 0, 901, 0, 0 ], [ 1, 0, 0.1553, 0.0097, 0, 0.66, 0.1111, 99, 0, 1, 0, 0, 99, 0, 0 ], [ 1, 0, 0.1748, 0.0097, 0, 0....
[ "import multiprocessing as mp", "import multiprocessing.synchronize # To make sure we have all the functionality.", "import types", "import marshal", "import unittest", "def repeat(x):\n \"\"\"A generator that repeats the input forever - can be used with the mp_map function to give data to a function tha...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1923, 0.0128, 0, 0.66, 0, 972, 0, 1, 0, 0, 972, 0, 0 ], [ 14, 0, 0.6282, 0.7564, 0, 0.66, 1, 799, 4, 0, 0, 0, 0, 0, 1 ] ]
[ "from utils.start_cpp import start_cpp", "numpy_util_code = start_cpp() + \"\"\"\n#ifndef NUMPY_UTIL_CODE\n#define NUMPY_UTIL_CODE\n\nfloat & Float1D(PyArrayObject * arr, int index = 0)\n{\n return *(float*)(arr->data + index*arr->strides[0]);\n}" ]
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.2857, 0.0179, 0, 0.66, 0, 192, 0, 1, 0, 0, 192, 0, 0 ], [ 1, 0, 0.3036, 0.0179, 0, 0.66, 0.0385, 905, 0, 1, 0, 0, 905, 0, 0 ], [ 1, 0, 0.3214, 0.0179, 0, ...
[ "import cvarray", "import mp_map", "import prog_bar", "import numpy_help_cpp", "import python_obj_cpp", "import matrix_cpp", "import gamma_cpp", "import setProcName", "import start_cpp", "import make", "import doc_gen", "doc = doc_gen.DocGen('utils', 'Utilities/Miscellaneous', 'Library of misc...
# Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0818, 0.0063, 0, 0.66, 0, 88, 0, 1, 0, 0, 88, 0, 0 ], [ 1, 0, 0.0881, 0.0063, 0, 0.66, 0.0909, 715, 0, 1, 0, 0, 715, 0, 0 ], [ 1, 0, 0.0943, 0.0063, 0, 0....
[ "import unittest", "import random", "import math", "from scipy.special import gammaln, psi, polygamma", "from scipy import weave", "from utils.start_cpp import start_cpp", "gamma_code = start_cpp() + \"\"\"\n#ifndef GAMMA_CODE\n#define GAMMA_CODE\n\n#include <cmath>\n\n// Returns the natural logarithm o...
# -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.5, 0.0333, 0, 0.66, 0, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 1, 0, 0.5333, 0.0333, 0, 0.66, 0.5, 154, 0, 1, 0, 0, 154, 0, 0 ], [ 2, 0, 0.8333, 0.3667, 0, 0.66, ...
[ "import inspect", "import hashlib", "def start_cpp(hash_str = None):\n \"\"\"This method does two things - firstly it adds the correct line numbers to scipy.weave code (Good for debugging) and secondly it can optionaly inserts a hash code of some other code into the code. This latter feature is useful for work...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.2031, 0.0156, 0, 0.66, 0, 509, 0, 1, 0, 0, 509, 0, 0 ], [ 1, 0, 0.2188, 0.0156, 0, 0.66, 0.125, 79, 0, 1, 0, 0, 79, 0, 0 ], [ 1, 0, 0.2344, 0.0156, 0, 0.6...
[ "import sys", "import os.path", "import tempfile", "import shutil", "from distutils.core import setup, Extension", "import distutils.ccompiler", "import distutils.dep_util", "try:\n __default_compiler = distutils.ccompiler.new_compiler()\nexcept:\n __default_compiler = None", " __default_compiler...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0634, 0.0049, 0, 0.66, 0, 291, 0, 1, 0, 0, 291, 0, 0 ], [ 1, 0, 0.0683, 0.0049, 0, 0.66, 0.5, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 3, 0, 0.5439, 0.9171, 0, 0.6...
[ "import pydoc", "import inspect", "class DocGen:\n \"\"\"A helper class that is used to generate documentation for the system. Outputs multiple formats simultaneously, specifically html for local reading with a webbrowser and the markup used by the wiki system on Google code.\"\"\"\n def __init__(self, name, ...
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.3636, 0.0227, 0, 0.66, 0, 182, 0, 1, 0, 0, 182, 0, 0 ], [ 2, 0, 0.5682, 0.25, 0, 0.66, 0.5, 903, 0, 1, 0, 0, 0, 0, 9 ], [ 8, 1, 0.4773, 0.0227, 1, 0.94, ...
[ "from ctypes import *", "def setProcName(name):\n \"\"\"Sets the process name, linux only - useful for those programs where you might want to do a killall, but don't want to slaughter all the other python processes. Note that there are multiple mechanisms, and that the given new name can be shortened by differin...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1456, 0.0097, 0, 0.66, 0, 901, 0, 1, 0, 0, 901, 0, 0 ], [ 1, 0, 0.1553, 0.0097, 0, 0.66, 0.1111, 99, 0, 1, 0, 0, 99, 0, 0 ], [ 1, 0, 0.1748, 0.0097, 0, 0....
[ "import multiprocessing as mp", "import multiprocessing.synchronize # To make sure we have all the functionality.", "import types", "import marshal", "import unittest", "def repeat(x):\n \"\"\"A generator that repeats the input forever - can be used with the mp_map function to give data to a function tha...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1923, 0.0128, 0, 0.66, 0, 972, 0, 1, 0, 0, 972, 0, 0 ], [ 14, 0, 0.6282, 0.7564, 0, 0.66, 1, 799, 4, 0, 0, 0, 0, 0, 1 ] ]
[ "from utils.start_cpp import start_cpp", "numpy_util_code = start_cpp() + \"\"\"\n#ifndef NUMPY_UTIL_CODE\n#define NUMPY_UTIL_CODE\n\nfloat & Float1D(PyArrayObject * arr, int index = 0)\n{\n return *(float*)(arr->data + index*arr->strides[0]);\n}" ]
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.2857, 0.0179, 0, 0.66, 0, 192, 0, 1, 0, 0, 192, 0, 0 ], [ 1, 0, 0.3036, 0.0179, 0, 0.66, 0.0385, 905, 0, 1, 0, 0, 905, 0, 0 ], [ 1, 0, 0.3214, 0.0179, 0, ...
[ "import cvarray", "import mp_map", "import prog_bar", "import numpy_help_cpp", "import python_obj_cpp", "import matrix_cpp", "import gamma_cpp", "import setProcName", "import start_cpp", "import make", "import doc_gen", "doc = doc_gen.DocGen('utils', 'Utilities/Miscellaneous', 'Library of misc...
# Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0818, 0.0063, 0, 0.66, 0, 88, 0, 1, 0, 0, 88, 0, 0 ], [ 1, 0, 0.0881, 0.0063, 0, 0.66, 0.0909, 715, 0, 1, 0, 0, 715, 0, 0 ], [ 1, 0, 0.0943, 0.0063, 0, 0....
[ "import unittest", "import random", "import math", "from scipy.special import gammaln, psi, polygamma", "from scipy import weave", "from utils.start_cpp import start_cpp", "gamma_code = start_cpp() + \"\"\"\n#ifndef GAMMA_CODE\n#define GAMMA_CODE\n\n#include <cmath>\n\n// Returns the natural logarithm o...
# -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.5, 0.0333, 0, 0.66, 0, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 1, 0, 0.5333, 0.0333, 0, 0.66, 0.5, 154, 0, 1, 0, 0, 154, 0, 0 ], [ 2, 0, 0.8333, 0.3667, 0, 0.66, ...
[ "import inspect", "import hashlib", "def start_cpp(hash_str = None):\n \"\"\"This method does two things - firstly it adds the correct line numbers to scipy.weave code (Good for debugging) and secondly it can optionaly inserts a hash code of some other code into the code. This latter feature is useful for work...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.2031, 0.0156, 0, 0.66, 0, 509, 0, 1, 0, 0, 509, 0, 0 ], [ 1, 0, 0.2188, 0.0156, 0, 0.66, 0.125, 79, 0, 1, 0, 0, 79, 0, 0 ], [ 1, 0, 0.2344, 0.0156, 0, 0.6...
[ "import sys", "import os.path", "import tempfile", "import shutil", "from distutils.core import setup, Extension", "import distutils.ccompiler", "import distutils.dep_util", "try:\n __default_compiler = distutils.ccompiler.new_compiler()\nexcept:\n __default_compiler = None", " __default_compiler...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0634, 0.0049, 0, 0.66, 0, 291, 0, 1, 0, 0, 291, 0, 0 ], [ 1, 0, 0.0683, 0.0049, 0, 0.66, 0.5, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 3, 0, 0.5439, 0.9171, 0, 0.6...
[ "import pydoc", "import inspect", "class DocGen:\n \"\"\"A helper class that is used to generate documentation for the system. Outputs multiple formats simultaneously, specifically html for local reading with a webbrowser and the markup used by the wiki system on Google code.\"\"\"\n def __init__(self, name, ...
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.3636, 0.0227, 0, 0.66, 0, 182, 0, 1, 0, 0, 182, 0, 0 ], [ 2, 0, 0.5682, 0.25, 0, 0.66, 0.5, 903, 0, 1, 0, 0, 0, 0, 9 ], [ 8, 1, 0.4773, 0.0227, 1, 0.27, ...
[ "from ctypes import *", "def setProcName(name):\n \"\"\"Sets the process name, linux only - useful for those programs where you might want to do a killall, but don't want to slaughter all the other python processes. Note that there are multiple mechanisms, and that the given new name can be shortened by differin...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1456, 0.0097, 0, 0.66, 0, 901, 0, 1, 0, 0, 901, 0, 0 ], [ 1, 0, 0.1553, 0.0097, 0, 0.66, 0.1111, 99, 0, 1, 0, 0, 99, 0, 0 ], [ 1, 0, 0.1748, 0.0097, 0, 0....
[ "import multiprocessing as mp", "import multiprocessing.synchronize # To make sure we have all the functionality.", "import types", "import marshal", "import unittest", "def repeat(x):\n \"\"\"A generator that repeats the input forever - can be used with the mp_map function to give data to a function tha...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1923, 0.0128, 0, 0.66, 0, 972, 0, 1, 0, 0, 972, 0, 0 ], [ 14, 0, 0.6282, 0.7564, 0, 0.66, 1, 799, 4, 0, 0, 0, 0, 0, 1 ] ]
[ "from utils.start_cpp import start_cpp", "numpy_util_code = start_cpp() + \"\"\"\n#ifndef NUMPY_UTIL_CODE\n#define NUMPY_UTIL_CODE\n\nfloat & Float1D(PyArrayObject * arr, int index = 0)\n{\n return *(float*)(arr->data + index*arr->strides[0]);\n}" ]
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.2857, 0.0179, 0, 0.66, 0, 192, 0, 1, 0, 0, 192, 0, 0 ], [ 1, 0, 0.3036, 0.0179, 0, 0.66, 0.0385, 905, 0, 1, 0, 0, 905, 0, 0 ], [ 1, 0, 0.3214, 0.0179, 0, ...
[ "import cvarray", "import mp_map", "import prog_bar", "import numpy_help_cpp", "import python_obj_cpp", "import matrix_cpp", "import gamma_cpp", "import setProcName", "import start_cpp", "import make", "import doc_gen", "doc = doc_gen.DocGen('utils', 'Utilities/Miscellaneous', 'Library of misc...
# Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0818, 0.0063, 0, 0.66, 0, 88, 0, 1, 0, 0, 88, 0, 0 ], [ 1, 0, 0.0881, 0.0063, 0, 0.66, 0.0909, 715, 0, 1, 0, 0, 715, 0, 0 ], [ 1, 0, 0.0943, 0.0063, 0, 0....
[ "import unittest", "import random", "import math", "from scipy.special import gammaln, psi, polygamma", "from scipy import weave", "from utils.start_cpp import start_cpp", "gamma_code = start_cpp() + \"\"\"\n#ifndef GAMMA_CODE\n#define GAMMA_CODE\n\n#include <cmath>\n\n// Returns the natural logarithm o...
# -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.5, 0.0333, 0, 0.66, 0, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 1, 0, 0.5333, 0.0333, 0, 0.66, 0.5, 154, 0, 1, 0, 0, 154, 0, 0 ], [ 2, 0, 0.8333, 0.3667, 0, 0.66, ...
[ "import inspect", "import hashlib", "def start_cpp(hash_str = None):\n \"\"\"This method does two things - firstly it adds the correct line numbers to scipy.weave code (Good for debugging) and secondly it can optionaly inserts a hash code of some other code into the code. This latter feature is useful for work...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.2031, 0.0156, 0, 0.66, 0, 509, 0, 1, 0, 0, 509, 0, 0 ], [ 1, 0, 0.2188, 0.0156, 0, 0.66, 0.125, 79, 0, 1, 0, 0, 79, 0, 0 ], [ 1, 0, 0.2344, 0.0156, 0, 0.6...
[ "import sys", "import os.path", "import tempfile", "import shutil", "from distutils.core import setup, Extension", "import distutils.ccompiler", "import distutils.dep_util", "try:\n __default_compiler = distutils.ccompiler.new_compiler()\nexcept:\n __default_compiler = None", " __default_compiler...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0634, 0.0049, 0, 0.66, 0, 291, 0, 1, 0, 0, 291, 0, 0 ], [ 1, 0, 0.0683, 0.0049, 0, 0.66, 0.5, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 3, 0, 0.5439, 0.9171, 0, 0.6...
[ "import pydoc", "import inspect", "class DocGen:\n \"\"\"A helper class that is used to generate documentation for the system. Outputs multiple formats simultaneously, specifically html for local reading with a webbrowser and the markup used by the wiki system on Google code.\"\"\"\n def __init__(self, name, ...
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.3636, 0.0227, 0, 0.66, 0, 182, 0, 1, 0, 0, 182, 0, 0 ], [ 2, 0, 0.5682, 0.25, 0, 0.66, 0.5, 903, 0, 1, 0, 0, 0, 0, 9 ], [ 8, 1, 0.4773, 0.0227, 1, 0.22, ...
[ "from ctypes import *", "def setProcName(name):\n \"\"\"Sets the process name, linux only - useful for those programs where you might want to do a killall, but don't want to slaughter all the other python processes. Note that there are multiple mechanisms, and that the given new name can be shortened by differin...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1456, 0.0097, 0, 0.66, 0, 901, 0, 1, 0, 0, 901, 0, 0 ], [ 1, 0, 0.1553, 0.0097, 0, 0.66, 0.1111, 99, 0, 1, 0, 0, 99, 0, 0 ], [ 1, 0, 0.1748, 0.0097, 0, 0....
[ "import multiprocessing as mp", "import multiprocessing.synchronize # To make sure we have all the functionality.", "import types", "import marshal", "import unittest", "def repeat(x):\n \"\"\"A generator that repeats the input forever - can be used with the mp_map function to give data to a function tha...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1923, 0.0128, 0, 0.66, 0, 972, 0, 1, 0, 0, 972, 0, 0 ], [ 14, 0, 0.6282, 0.7564, 0, 0.66, 1, 799, 4, 0, 0, 0, 0, 0, 1 ] ]
[ "from utils.start_cpp import start_cpp", "numpy_util_code = start_cpp() + \"\"\"\n#ifndef NUMPY_UTIL_CODE\n#define NUMPY_UTIL_CODE\n\nfloat & Float1D(PyArrayObject * arr, int index = 0)\n{\n return *(float*)(arr->data + index*arr->strides[0]);\n}" ]
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.2857, 0.0179, 0, 0.66, 0, 192, 0, 1, 0, 0, 192, 0, 0 ], [ 1, 0, 0.3036, 0.0179, 0, 0.66, 0.0385, 905, 0, 1, 0, 0, 905, 0, 0 ], [ 1, 0, 0.3214, 0.0179, 0, ...
[ "import cvarray", "import mp_map", "import prog_bar", "import numpy_help_cpp", "import python_obj_cpp", "import matrix_cpp", "import gamma_cpp", "import setProcName", "import start_cpp", "import make", "import doc_gen", "doc = doc_gen.DocGen('utils', 'Utilities/Miscellaneous', 'Library of misc...
# Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0818, 0.0063, 0, 0.66, 0, 88, 0, 1, 0, 0, 88, 0, 0 ], [ 1, 0, 0.0881, 0.0063, 0, 0.66, 0.0909, 715, 0, 1, 0, 0, 715, 0, 0 ], [ 1, 0, 0.0943, 0.0063, 0, 0....
[ "import unittest", "import random", "import math", "from scipy.special import gammaln, psi, polygamma", "from scipy import weave", "from utils.start_cpp import start_cpp", "gamma_code = start_cpp() + \"\"\"\n#ifndef GAMMA_CODE\n#define GAMMA_CODE\n\n#include <cmath>\n\n// Returns the natural logarithm o...
# -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.5, 0.0333, 0, 0.66, 0, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 1, 0, 0.5333, 0.0333, 0, 0.66, 0.5, 154, 0, 1, 0, 0, 154, 0, 0 ], [ 2, 0, 0.8333, 0.3667, 0, 0.66, ...
[ "import inspect", "import hashlib", "def start_cpp(hash_str = None):\n \"\"\"This method does two things - firstly it adds the correct line numbers to scipy.weave code (Good for debugging) and secondly it can optionaly inserts a hash code of some other code into the code. This latter feature is useful for work...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.2031, 0.0156, 0, 0.66, 0, 509, 0, 1, 0, 0, 509, 0, 0 ], [ 1, 0, 0.2188, 0.0156, 0, 0.66, 0.125, 79, 0, 1, 0, 0, 79, 0, 0 ], [ 1, 0, 0.2344, 0.0156, 0, 0.6...
[ "import sys", "import os.path", "import tempfile", "import shutil", "from distutils.core import setup, Extension", "import distutils.ccompiler", "import distutils.dep_util", "try:\n __default_compiler = distutils.ccompiler.new_compiler()\nexcept:\n __default_compiler = None", " __default_compiler...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0634, 0.0049, 0, 0.66, 0, 291, 0, 1, 0, 0, 291, 0, 0 ], [ 1, 0, 0.0683, 0.0049, 0, 0.66, 0.5, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 3, 0, 0.5439, 0.9171, 0, 0.6...
[ "import pydoc", "import inspect", "class DocGen:\n \"\"\"A helper class that is used to generate documentation for the system. Outputs multiple formats simultaneously, specifically html for local reading with a webbrowser and the markup used by the wiki system on Google code.\"\"\"\n def __init__(self, name, ...
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.3636, 0.0227, 0, 0.66, 0, 182, 0, 1, 0, 0, 182, 0, 0 ], [ 2, 0, 0.5682, 0.25, 0, 0.66, 0.5, 903, 0, 1, 0, 0, 0, 0, 9 ], [ 8, 1, 0.4773, 0.0227, 1, 0.3, ...
[ "from ctypes import *", "def setProcName(name):\n \"\"\"Sets the process name, linux only - useful for those programs where you might want to do a killall, but don't want to slaughter all the other python processes. Note that there are multiple mechanisms, and that the given new name can be shortened by differin...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1456, 0.0097, 0, 0.66, 0, 901, 0, 1, 0, 0, 901, 0, 0 ], [ 1, 0, 0.1553, 0.0097, 0, 0.66, 0.1111, 99, 0, 1, 0, 0, 99, 0, 0 ], [ 1, 0, 0.1748, 0.0097, 0, 0....
[ "import multiprocessing as mp", "import multiprocessing.synchronize # To make sure we have all the functionality.", "import types", "import marshal", "import unittest", "def repeat(x):\n \"\"\"A generator that repeats the input forever - can be used with the mp_map function to give data to a function tha...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1923, 0.0128, 0, 0.66, 0, 972, 0, 1, 0, 0, 972, 0, 0 ], [ 14, 0, 0.6282, 0.7564, 0, 0.66, 1, 799, 4, 0, 0, 0, 0, 0, 1 ] ]
[ "from utils.start_cpp import start_cpp", "numpy_util_code = start_cpp() + \"\"\"\n#ifndef NUMPY_UTIL_CODE\n#define NUMPY_UTIL_CODE\n\nfloat & Float1D(PyArrayObject * arr, int index = 0)\n{\n return *(float*)(arr->data + index*arr->strides[0]);\n}" ]
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.2857, 0.0179, 0, 0.66, 0, 192, 0, 1, 0, 0, 192, 0, 0 ], [ 1, 0, 0.3036, 0.0179, 0, 0.66, 0.0385, 905, 0, 1, 0, 0, 905, 0, 0 ], [ 1, 0, 0.3214, 0.0179, 0, ...
[ "import cvarray", "import mp_map", "import prog_bar", "import numpy_help_cpp", "import python_obj_cpp", "import matrix_cpp", "import gamma_cpp", "import setProcName", "import start_cpp", "import make", "import doc_gen", "doc = doc_gen.DocGen('utils', 'Utilities/Miscellaneous', 'Library of misc...
# Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0818, 0.0063, 0, 0.66, 0, 88, 0, 1, 0, 0, 88, 0, 0 ], [ 1, 0, 0.0881, 0.0063, 0, 0.66, 0.0909, 715, 0, 1, 0, 0, 715, 0, 0 ], [ 1, 0, 0.0943, 0.0063, 0, 0....
[ "import unittest", "import random", "import math", "from scipy.special import gammaln, psi, polygamma", "from scipy import weave", "from utils.start_cpp import start_cpp", "gamma_code = start_cpp() + \"\"\"\n#ifndef GAMMA_CODE\n#define GAMMA_CODE\n\n#include <cmath>\n\n// Returns the natural logarithm o...
# -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.5, 0.0333, 0, 0.66, 0, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 1, 0, 0.5333, 0.0333, 0, 0.66, 0.5, 154, 0, 1, 0, 0, 154, 0, 0 ], [ 2, 0, 0.8333, 0.3667, 0, 0.66, ...
[ "import inspect", "import hashlib", "def start_cpp(hash_str = None):\n \"\"\"This method does two things - firstly it adds the correct line numbers to scipy.weave code (Good for debugging) and secondly it can optionaly inserts a hash code of some other code into the code. This latter feature is useful for work...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.2031, 0.0156, 0, 0.66, 0, 509, 0, 1, 0, 0, 509, 0, 0 ], [ 1, 0, 0.2188, 0.0156, 0, 0.66, 0.125, 79, 0, 1, 0, 0, 79, 0, 0 ], [ 1, 0, 0.2344, 0.0156, 0, 0.6...
[ "import sys", "import os.path", "import tempfile", "import shutil", "from distutils.core import setup, Extension", "import distutils.ccompiler", "import distutils.dep_util", "try:\n __default_compiler = distutils.ccompiler.new_compiler()\nexcept:\n __default_compiler = None", " __default_compiler...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0634, 0.0049, 0, 0.66, 0, 291, 0, 1, 0, 0, 291, 0, 0 ], [ 1, 0, 0.0683, 0.0049, 0, 0.66, 0.5, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 3, 0, 0.5439, 0.9171, 0, 0.6...
[ "import pydoc", "import inspect", "class DocGen:\n \"\"\"A helper class that is used to generate documentation for the system. Outputs multiple formats simultaneously, specifically html for local reading with a webbrowser and the markup used by the wiki system on Google code.\"\"\"\n def __init__(self, name, ...
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.3636, 0.0227, 0, 0.66, 0, 182, 0, 1, 0, 0, 182, 0, 0 ], [ 2, 0, 0.5682, 0.25, 0, 0.66, 0.5, 903, 0, 1, 0, 0, 0, 0, 9 ], [ 8, 1, 0.4773, 0.0227, 1, 0.02, ...
[ "from ctypes import *", "def setProcName(name):\n \"\"\"Sets the process name, linux only - useful for those programs where you might want to do a killall, but don't want to slaughter all the other python processes. Note that there are multiple mechanisms, and that the given new name can be shortened by differin...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1456, 0.0097, 0, 0.66, 0, 901, 0, 1, 0, 0, 901, 0, 0 ], [ 1, 0, 0.1553, 0.0097, 0, 0.66, 0.1111, 99, 0, 1, 0, 0, 99, 0, 0 ], [ 1, 0, 0.1748, 0.0097, 0, 0....
[ "import multiprocessing as mp", "import multiprocessing.synchronize # To make sure we have all the functionality.", "import types", "import marshal", "import unittest", "def repeat(x):\n \"\"\"A generator that repeats the input forever - can be used with the mp_map function to give data to a function tha...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1923, 0.0128, 0, 0.66, 0, 972, 0, 1, 0, 0, 972, 0, 0 ], [ 14, 0, 0.6282, 0.7564, 0, 0.66, 1, 799, 4, 0, 0, 0, 0, 0, 1 ] ]
[ "from utils.start_cpp import start_cpp", "numpy_util_code = start_cpp() + \"\"\"\n#ifndef NUMPY_UTIL_CODE\n#define NUMPY_UTIL_CODE\n\nfloat & Float1D(PyArrayObject * arr, int index = 0)\n{\n return *(float*)(arr->data + index*arr->strides[0]);\n}" ]
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.2857, 0.0179, 0, 0.66, 0, 192, 0, 1, 0, 0, 192, 0, 0 ], [ 1, 0, 0.3036, 0.0179, 0, 0.66, 0.0385, 905, 0, 1, 0, 0, 905, 0, 0 ], [ 1, 0, 0.3214, 0.0179, 0, ...
[ "import cvarray", "import mp_map", "import prog_bar", "import numpy_help_cpp", "import python_obj_cpp", "import matrix_cpp", "import gamma_cpp", "import setProcName", "import start_cpp", "import make", "import doc_gen", "doc = doc_gen.DocGen('utils', 'Utilities/Miscellaneous', 'Library of misc...
# Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0818, 0.0063, 0, 0.66, 0, 88, 0, 1, 0, 0, 88, 0, 0 ], [ 1, 0, 0.0881, 0.0063, 0, 0.66, 0.0909, 715, 0, 1, 0, 0, 715, 0, 0 ], [ 1, 0, 0.0943, 0.0063, 0, 0....
[ "import unittest", "import random", "import math", "from scipy.special import gammaln, psi, polygamma", "from scipy import weave", "from utils.start_cpp import start_cpp", "gamma_code = start_cpp() + \"\"\"\n#ifndef GAMMA_CODE\n#define GAMMA_CODE\n\n#include <cmath>\n\n// Returns the natural logarithm o...
# -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.5, 0.0333, 0, 0.66, 0, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 1, 0, 0.5333, 0.0333, 0, 0.66, 0.5, 154, 0, 1, 0, 0, 154, 0, 0 ], [ 2, 0, 0.8333, 0.3667, 0, 0.66, ...
[ "import inspect", "import hashlib", "def start_cpp(hash_str = None):\n \"\"\"This method does two things - firstly it adds the correct line numbers to scipy.weave code (Good for debugging) and secondly it can optionaly inserts a hash code of some other code into the code. This latter feature is useful for work...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.2031, 0.0156, 0, 0.66, 0, 509, 0, 1, 0, 0, 509, 0, 0 ], [ 1, 0, 0.2188, 0.0156, 0, 0.66, 0.125, 79, 0, 1, 0, 0, 79, 0, 0 ], [ 1, 0, 0.2344, 0.0156, 0, 0.6...
[ "import sys", "import os.path", "import tempfile", "import shutil", "from distutils.core import setup, Extension", "import distutils.ccompiler", "import distutils.dep_util", "try:\n __default_compiler = distutils.ccompiler.new_compiler()\nexcept:\n __default_compiler = None", " __default_compiler...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0634, 0.0049, 0, 0.66, 0, 291, 0, 1, 0, 0, 291, 0, 0 ], [ 1, 0, 0.0683, 0.0049, 0, 0.66, 0.5, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 3, 0, 0.5439, 0.9171, 0, 0.6...
[ "import pydoc", "import inspect", "class DocGen:\n \"\"\"A helper class that is used to generate documentation for the system. Outputs multiple formats simultaneously, specifically html for local reading with a webbrowser and the markup used by the wiki system on Google code.\"\"\"\n def __init__(self, name, ...
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.3636, 0.0227, 0, 0.66, 0, 182, 0, 1, 0, 0, 182, 0, 0 ], [ 2, 0, 0.5682, 0.25, 0, 0.66, 0.5, 903, 0, 1, 0, 0, 0, 0, 9 ], [ 8, 1, 0.4773, 0.0227, 1, 0.04, ...
[ "from ctypes import *", "def setProcName(name):\n \"\"\"Sets the process name, linux only - useful for those programs where you might want to do a killall, but don't want to slaughter all the other python processes. Note that there are multiple mechanisms, and that the given new name can be shortened by differin...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1456, 0.0097, 0, 0.66, 0, 901, 0, 1, 0, 0, 901, 0, 0 ], [ 1, 0, 0.1553, 0.0097, 0, 0.66, 0.1111, 99, 0, 1, 0, 0, 99, 0, 0 ], [ 1, 0, 0.1748, 0.0097, 0, 0....
[ "import multiprocessing as mp", "import multiprocessing.synchronize # To make sure we have all the functionality.", "import types", "import marshal", "import unittest", "def repeat(x):\n \"\"\"A generator that repeats the input forever - can be used with the mp_map function to give data to a function tha...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1923, 0.0128, 0, 0.66, 0, 972, 0, 1, 0, 0, 972, 0, 0 ], [ 14, 0, 0.6282, 0.7564, 0, 0.66, 1, 799, 4, 0, 0, 0, 0, 0, 1 ] ]
[ "from utils.start_cpp import start_cpp", "numpy_util_code = start_cpp() + \"\"\"\n#ifndef NUMPY_UTIL_CODE\n#define NUMPY_UTIL_CODE\n\nfloat & Float1D(PyArrayObject * arr, int index = 0)\n{\n return *(float*)(arr->data + index*arr->strides[0]);\n}" ]
# -*- coding: utf-8 -*- # Copyright 2011 Tom SF Haines # Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at # http://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agre...
[ [ 1, 0, 0.0872, 0.0067, 0, 0.66, 0, 526, 0, 1, 0, 0, 526, 0, 0 ], [ 1, 0, 0.094, 0.0067, 0, 0.66, 0.1667, 715, 0, 1, 0, 0, 715, 0, 0 ], [ 1, 0, 0.1074, 0.0067, 0, 0...
[ "import math", "import random", "import numpy", "import scipy.weave as weave", "from kmeans1 import KMeans1", "from kmeans2 import KMeans2", "class KMeans3(KMeans2):\n \"\"\"Takes the initialisation improvememnts of KMeans2 and additionally makes improvements to the kmeans implimentation. Specifically ...
# -*- coding: utf-8 -*- # Copyright 2011 Tom SF Haines # Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at # http://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agre...
[ [ 1, 0, 0.3939, 0.0303, 0, 0.66, 0, 526, 0, 1, 0, 0, 526, 0, 0 ], [ 1, 0, 0.4242, 0.0303, 0, 0.66, 0.2, 715, 0, 1, 0, 0, 715, 0, 0 ], [ 1, 0, 0.4848, 0.0303, 0, 0.6...
[ "import math", "import random", "import numpy", "import scipy.cluster.vq", "from kmeans_shared import KMeansShared", "class KMeans0(KMeansShared):\n \"\"\"Wraps the kmeans implimentation provided by scipy with the same interface as provided by the other kmeans implimentations in the system. My experiance...
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright 2011 Tom SF Haines # Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at # http://www.apache.org/licenses/LICENSE-2.0 # Unless required by...
[ [ 1, 0, 0.2456, 0.0175, 0, 0.66, 0, 987, 0, 1, 0, 0, 987, 0, 0 ], [ 1, 0, 0.2807, 0.0175, 0, 0.66, 0.0476, 970, 0, 1, 0, 0, 970, 0, 0 ], [ 14, 0, 0.3684, 0.0175, 0, ...
[ "import gmm", "from utils import doc_gen", "doc = doc_gen.DocGen('gmm', 'Gaussian Mixture Model (plus K-means)', 'Gaussian mixture model, with EM, plus assorted k-means implimentations')", "doc.addFile('readme.txt', 'Overview')", "def pruneClassOfDo(cls):\n methods = dir(cls)\n for method in methods:\n ...
# -*- coding: utf-8 -*- # Copyright 2011 Tom SF Haines # Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at # http://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agre...
[ [ 1, 0, 0.0769, 0.0059, 0, 0.66, 0, 526, 0, 1, 0, 0, 526, 0, 0 ], [ 1, 0, 0.0828, 0.0059, 0, 0.66, 0.25, 63, 0, 1, 0, 0, 63, 0, 0 ], [ 1, 0, 0.0888, 0.0059, 0, 0.66...
[ "import math", "import exceptions", "import cPickle as pickle", "import numpy", "class KMeansShared:\n \"\"\"Provides a standard interface for k-means, so that all implimentations provide the same one. key issue is that features can be provided in 3 ways - an array where each row is a feature, a list of fe...
# -*- coding: utf-8 -*- # Copyright 2011 Tom SF Haines # Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at # http://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agre...
[ [ 1, 0, 0.0788, 0.0061, 0, 0.66, 0, 526, 0, 1, 0, 0, 526, 0, 0 ], [ 1, 0, 0.0848, 0.0061, 0, 0.66, 0.2, 715, 0, 1, 0, 0, 715, 0, 0 ], [ 1, 0, 0.097, 0.0061, 0, 0.66...
[ "import math", "import random", "import numpy", "import scipy.weave as weave", "from kmeans_shared import KMeansShared", "class KMeans1(KMeansShared):\n \"\"\"The most basic implimentation of k-means possible - just brute force with multiple restarts.\"\"\"\n\n def doTrain(self, feats, clusters, maxIter...
# -*- coding: utf-8 -*- # Copyright 2011 Tom SF Haines # Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at # http://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agre...
[ [ 1, 0, 0.7895, 0.0526, 0, 0.66, 0, 622, 0, 1, 0, 0, 622, 0, 0 ], [ 1, 0, 0.8421, 0.0526, 0, 0.66, 0.25, 783, 0, 1, 0, 0, 783, 0, 0 ], [ 1, 0, 0.8947, 0.0526, 0, 0....
[ "from kmeans import *", "from isotropic import IsotropicGMM", "from bic import modelSelectBIC", "from kmeans_shared import KMeansShared", "from mixture import Mixture" ]
# -*- coding: utf-8 -*- # Copyright 2011 Tom SF Haines # Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at # http://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agre...
[ [ 1, 0, 0.0818, 0.0063, 0, 0.66, 0, 526, 0, 1, 0, 0, 526, 0, 0 ], [ 1, 0, 0.0881, 0.0063, 0, 0.66, 0.2, 715, 0, 1, 0, 0, 715, 0, 0 ], [ 1, 0, 0.1006, 0.0063, 0, 0.6...
[ "import math", "import random", "import numpy", "import scipy.weave as weave", "from kmeans_shared import KMeansShared", "class KMeans2(KMeansShared):\n \"\"\"This version of kmeans gets clever with its initialisation, running k-means on a subset of points, repeatedly, then combining the various runs, be...
# -*- coding: utf-8 -*- # Copyright 2011 Tom SF Haines # Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at # http://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agre...
[ [ 1, 0, 0.0535, 0.0041, 0, 0.66, 0, 526, 0, 1, 0, 0, 526, 0, 0 ], [ 1, 0, 0.0576, 0.0041, 0, 0.66, 0.1667, 715, 0, 1, 0, 0, 715, 0, 0 ], [ 1, 0, 0.0658, 0.0041, 0, ...
[ "import math", "import random", "import numpy", "import scipy.weave as weave", "from kmeans import KMeans", "from mixture import Mixture", "class IsotropicGMM(Mixture):\n \"\"\"Fits a gaussian mixture model to a data set, using isotropic Gaussians, i.e. so each is parameterised by only a single standar...
# -*- coding: utf-8 -*-
[]
[]
# -*- coding: utf-8 -*- # Copyright 2011 Tom SF Haines # Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at # http://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agre...
[ [ 1, 0, 0.7143, 0.0476, 0, 0.66, 0, 470, 0, 1, 0, 0, 470, 0, 0 ], [ 1, 0, 0.7619, 0.0476, 0, 0.66, 0.2, 177, 0, 1, 0, 0, 177, 0, 0 ], [ 1, 0, 0.8095, 0.0476, 0, 0.6...
[ "from kmeans0 import KMeans0", "from kmeans1 import KMeans1", "from kmeans2 import KMeans2", "from kmeans3 import KMeans3", "KMeansShort = KMeans1", "KMeans = KMeans3" ]
# -*- coding: utf-8 -*- # Copyright 2011 Tom SF Haines # Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at # http://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agre...
[ [ 1, 0, 0.089, 0.0068, 0, 0.66, 0, 63, 0, 1, 0, 0, 63, 0, 0 ], [ 1, 0, 0.0959, 0.0068, 0, 0.66, 0.3333, 279, 0, 1, 0, 0, 279, 0, 0 ], [ 1, 0, 0.1096, 0.0068, 0, 0.6...
[ "import exceptions", "import cPickle as pickle", "import numpy", "class Mixture:\n \"\"\"Defines the basic interface to a mixture model - the methods to train, and then classify basically. Includes funky conversions to allow many forms of input/output, for conveniance.\"\"\"\n def clusterCount(self):\n \...
# Copyright 2011 Tom SF Haines # Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at # http://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agreed to in writing, softwar...
[ [ 3, 0, 0.6058, 0.8077, 0, 0.66, 0, 607, 0, 7, 0, 0, 0, 0, 3 ], [ 8, 1, 0.2308, 0.0192, 1, 0.35, 0, 0, 1, 0, 0, 0, 0, 0, 0 ], [ 2, 1, 0.3269, 0.1731, 1, 0.35, 0...
[ "class PriorConcDP:\n \"\"\"Contains the parameters required for the concentration parameter of a DP - specifically its Gamma prior and initial concentration value.\"\"\"\n def __init__(self, other = None):\n if other!=None:\n self.__alpha = other.alpha\n self.__beta = other.beta\n self.__conc =...
# Copyright 2011 Tom SF Haines # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation, either version 3 of the License, or # (at your option) any later version. # This program is distributed in the ho...
[ [ 1, 0, 0.0285, 0.0016, 0, 0.66, 0, 265, 0, 1, 0, 0, 265, 0, 0 ], [ 1, 0, 0.0301, 0.0016, 0, 0.66, 0.1667, 88, 0, 1, 0, 0, 88, 0, 0 ], [ 1, 0, 0.0316, 0.0016, 0, 0....
[ "from scipy import weave", "import unittest", "from utils.start_cpp import start_cpp", "from ds_cpp import ds_code", "ds_link_code = ds_code + start_cpp() + \"\"\"\n\n// Helper for extracting a boolean from a Python object...\nbool GetObjectBool(PyObject * obj, const char * name)\n{\n PyObject * boolObj = P...
# Copyright 2011 Tom SF Haines # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation, either version 3 of the License, or # (at your option) any later version. # This program is distributed in the ho...
[ [ 7, 0, 0.5897, 0.1282, 0, 0.66, 0, 0, 0, 1, 0, 0, 0, 0, 1 ], [ 1, 1, 0.5641, 0.0256, 1, 0.94, 0, 97, 0, 3, 0, 0, 97, 0, 0 ], [ 14, 1, 0.5897, 0.0256, 1, 0.94, ...
[ "try:\n from solve_weave import gibbs_all, gibbs_doc, leftRightNegLogProbWord\n __fitter = 'weave'\nexcept:\n raise Exception('Could not load basic weave solver')", " from solve_weave import gibbs_all, gibbs_doc, leftRightNegLogProbWord", " __fitter = 'weave'", "try:\n from solve_weave_mp import gibbs_a...
# Copyright 2011 Tom SF Haines # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation, either version 3 of the License, or # (at your option) any later version. # This program is distributed in the ho...
[ [ 1, 0, 0.0425, 0.0024, 0, 0.66, 0, 526, 0, 1, 0, 0, 526, 0, 0 ], [ 1, 0, 0.0448, 0.0024, 0, 0.66, 0.125, 954, 0, 1, 0, 0, 954, 0, 0 ], [ 1, 0, 0.0495, 0.0024, 0, 0...
[ "import math", "import numpy", "from dp_conc import PriorConcDP", "from params import Params", "from smp.smp import FlagIndexArray", "class DocState:\n \"\"\"Helper class to contain the State of Gibbs sampling for a specific document.\"\"\"\n def __init__(self, doc, alphaConc = None, abnormDict = None):...
# Copyright 2011 Tom SF Haines # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation, either version 3 of the License, or # (at your option) any later version. # This program is distributed in the ho...
[ [ 1, 0, 0.7241, 0.0345, 0, 0.66, 0, 305, 0, 1, 0, 0, 305, 0, 0 ], [ 1, 0, 0.8276, 0.0345, 0, 0.66, 0.1667, 206, 0, 1, 0, 0, 206, 0, 0 ], [ 1, 0, 0.8621, 0.0345, 0, ...
[ "from solvers import *", "from params import Params", "from solve_shared import State", "from model import Model, Sample, DocSample, DocModel", "from dp_conc import PriorConcDP", "from corpus import Corpus", "from document import Document" ]
# Copyright 2011 Tom SF Haines # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation, either version 3 of the License, or # (at your option) any later version. # This program is distributed in the ho...
[ [ 1, 0, 0.0233, 0.0013, 0, 0.66, 0, 526, 0, 1, 0, 0, 526, 0, 0 ], [ 1, 0, 0.0245, 0.0013, 0, 0.66, 0.1, 954, 0, 1, 0, 0, 954, 0, 0 ], [ 1, 0, 0.0258, 0.0013, 0, 0.6...
[ "import math", "import numpy", "import scipy.special", "import collections", "import solvers", "from smp.smp import FlagIndexArray", "from utils.mp_map import *", "class DocSample:\n \"\"\"Stores the sample information for a given document - the DP from which topics are drawn and which cluster it is ...
# Copyright 2011 Tom SF Haines # Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at # http://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agreed to in writing, softwar...
[ [ 3, 0, 0.5556, 0.899, 0, 0.66, 0, 219, 0, 10, 0, 0, 0, 0, 16 ], [ 8, 1, 0.1212, 0.0101, 1, 0.15, 0, 0, 1, 0, 0, 0, 0, 0, 0 ], [ 2, 1, 0.1869, 0.1212, 1, 0.15, ...
[ "class Params:\n \"\"\"Parameters for running the fitter that are universal to all fitters - basically the parameters you would typically associate with Gibbs sampling.\"\"\"\n def __init__(self, toClone = None):\n \"\"\"Sets the parameters to reasonable defaults. Will act as a copy constructor if given an ins...
# -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.2941, 0.0196, 0, 0.66, 0, 509, 0, 1, 0, 0, 509, 0, 0 ], [ 1, 0, 0.3137, 0.0196, 0, 0.66, 0.5, 654, 0, 1, 0, 0, 654, 0, 0 ], [ 3, 0, 0.6863, 0.6078, 0, 0.6...
[ "import sys", "import time", "class ProgBar:\n \"\"\"Simple console progress bar class. Note that object creation and destruction matter, as they indicate when processing starts and when it stops.\"\"\"\n def __init__(self, width = 60, onCallback = None):\n self.start = time.time()\n self.fill = 0\n ...
# -*- coding: utf-8 -*- # Code copied from http://opencv.willowgarage.com/wiki/PythonInterface - license unknown, but presumed to be at least as liberal as bsd (The license for opencv.). import cv import numpy as np def cv2array(im): """Converts a cv array to a numpy array.""" depth2dtype = { cv.IPL_...
[ [ 1, 0, 0.1296, 0.0185, 0, 0.66, 0, 492, 0, 1, 0, 0, 492, 0, 0 ], [ 1, 0, 0.1481, 0.0185, 0, 0.66, 0.3333, 954, 0, 1, 0, 0, 954, 0, 0 ], [ 2, 0, 0.3889, 0.3519, 0, ...
[ "import cv", "import numpy as np", "def cv2array(im):\n \"\"\"Converts a cv array to a numpy array.\"\"\"\n depth2dtype = {\n cv.IPL_DEPTH_8U: 'uint8',\n cv.IPL_DEPTH_8S: 'int8',\n cv.IPL_DEPTH_16U: 'uint16',\n cv.IPL_DEPTH_16S: 'int16',\n cv.IPL_DEPTH_32S: 'int32',", " \...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.1, 0.0077, 0, 0.66, 0, 972, 0, 1, 0, 0, 972, 0, 0 ], [ 14, 0, 0.5692, 0.8692, 0, 0.66, 1, 974, 4, 0, 0, 0, 0, 0, 1 ] ]
[ "from utils.start_cpp import start_cpp", "matrix_code = start_cpp() + \"\"\"\n#ifndef MATRIX_CODE\n#define MATRIX_CODE\n\ntemplate <typename T>\ninline void MemSwap(T * lhs, T * rhs, int count = 1)\n{\n while(count!=0)" ]
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1875, 0.0125, 0, 0.66, 0, 972, 0, 1, 0, 0, 972, 0, 0 ], [ 1, 0, 0.2, 0.0125, 0, 0.66, 0.5, 884, 0, 1, 0, 0, 884, 0, 0 ], [ 14, 0, 0.6312, 0.75, 0, 0.66, ...
[ "from utils.start_cpp import start_cpp", "from utils.numpy_help_cpp import numpy_util_code", "python_obj_code = numpy_util_code + start_cpp() + \"\"\"\n#ifndef PYTHON_OBJ_CODE\n#define PYTHON_OBJ_CODE\n\n// Extracts a boolean from an object...\nbool GetObjectBoolean(PyObject * obj, const char * name)\n{\n PyObj...
# -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.2941, 0.0196, 0, 0.66, 0, 509, 0, 1, 0, 0, 509, 0, 0 ], [ 1, 0, 0.3137, 0.0196, 0, 0.66, 0.5, 654, 0, 1, 0, 0, 654, 0, 0 ], [ 3, 0, 0.6863, 0.6078, 0, 0.6...
[ "import sys", "import time", "class ProgBar:\n \"\"\"Simple console progress bar class. Note that object creation and destruction matter, as they indicate when processing starts and when it stops.\"\"\"\n def __init__(self, width = 60, onCallback = None):\n self.start = time.time()\n self.fill = 0\n ...
# -*- coding: utf-8 -*- # Code copied from http://opencv.willowgarage.com/wiki/PythonInterface - license unknown, but presumed to be at least as liberal as bsd (The license for opencv.). import cv import numpy as np def cv2array(im): """Converts a cv array to a numpy array.""" depth2dtype = { cv.IPL_...
[ [ 1, 0, 0.1296, 0.0185, 0, 0.66, 0, 492, 0, 1, 0, 0, 492, 0, 0 ], [ 1, 0, 0.1481, 0.0185, 0, 0.66, 0.3333, 954, 0, 1, 0, 0, 954, 0, 0 ], [ 2, 0, 0.3889, 0.3519, 0, ...
[ "import cv", "import numpy as np", "def cv2array(im):\n \"\"\"Converts a cv array to a numpy array.\"\"\"\n depth2dtype = {\n cv.IPL_DEPTH_8U: 'uint8',\n cv.IPL_DEPTH_8S: 'int8',\n cv.IPL_DEPTH_16U: 'uint16',\n cv.IPL_DEPTH_16S: 'int16',\n cv.IPL_DEPTH_32S: 'int32',", " \...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.1, 0.0077, 0, 0.66, 0, 972, 0, 1, 0, 0, 972, 0, 0 ], [ 14, 0, 0.5692, 0.8692, 0, 0.66, 1, 974, 4, 0, 0, 0, 0, 0, 1 ] ]
[ "from utils.start_cpp import start_cpp", "matrix_code = start_cpp() + \"\"\"\n#ifndef MATRIX_CODE\n#define MATRIX_CODE\n\ntemplate <typename T>\ninline void MemSwap(T * lhs, T * rhs, int count = 1)\n{\n while(count!=0)" ]
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1875, 0.0125, 0, 0.66, 0, 972, 0, 1, 0, 0, 972, 0, 0 ], [ 1, 0, 0.2, 0.0125, 0, 0.66, 0.5, 884, 0, 1, 0, 0, 884, 0, 0 ], [ 14, 0, 0.6312, 0.75, 0, 0.66, ...
[ "from utils.start_cpp import start_cpp", "from utils.numpy_help_cpp import numpy_util_code", "python_obj_code = numpy_util_code + start_cpp() + \"\"\"\n#ifndef PYTHON_OBJ_CODE\n#define PYTHON_OBJ_CODE\n\n// Extracts a boolean from an object...\nbool GetObjectBoolean(PyObject * obj, const char * name)\n{\n PyObj...
# -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.2941, 0.0196, 0, 0.66, 0, 509, 0, 1, 0, 0, 509, 0, 0 ], [ 1, 0, 0.3137, 0.0196, 0, 0.66, 0.5, 654, 0, 1, 0, 0, 654, 0, 0 ], [ 3, 0, 0.6863, 0.6078, 0, 0.6...
[ "import sys", "import time", "class ProgBar:\n \"\"\"Simple console progress bar class. Note that object creation and destruction matter, as they indicate when processing starts and when it stops.\"\"\"\n def __init__(self, width = 60, onCallback = None):\n self.start = time.time()\n self.fill = 0\n ...
# -*- coding: utf-8 -*- # Code copied from http://opencv.willowgarage.com/wiki/PythonInterface - license unknown, but presumed to be at least as liberal as bsd (The license for opencv.). import cv import numpy as np def cv2array(im): """Converts a cv array to a numpy array.""" depth2dtype = { cv.IPL_...
[ [ 1, 0, 0.1296, 0.0185, 0, 0.66, 0, 492, 0, 1, 0, 0, 492, 0, 0 ], [ 1, 0, 0.1481, 0.0185, 0, 0.66, 0.3333, 954, 0, 1, 0, 0, 954, 0, 0 ], [ 2, 0, 0.3889, 0.3519, 0, ...
[ "import cv", "import numpy as np", "def cv2array(im):\n \"\"\"Converts a cv array to a numpy array.\"\"\"\n depth2dtype = {\n cv.IPL_DEPTH_8U: 'uint8',\n cv.IPL_DEPTH_8S: 'int8',\n cv.IPL_DEPTH_16U: 'uint16',\n cv.IPL_DEPTH_16S: 'int16',\n cv.IPL_DEPTH_32S: 'int32',", " \...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.1, 0.0077, 0, 0.66, 0, 972, 0, 1, 0, 0, 972, 0, 0 ], [ 14, 0, 0.5692, 0.8692, 0, 0.66, 1, 974, 4, 0, 0, 0, 0, 0, 1 ] ]
[ "from utils.start_cpp import start_cpp", "matrix_code = start_cpp() + \"\"\"\n#ifndef MATRIX_CODE\n#define MATRIX_CODE\n\ntemplate <typename T>\ninline void MemSwap(T * lhs, T * rhs, int count = 1)\n{\n while(count!=0)" ]