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# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1923, 0.0128, 0, 0.66, 0, 972, 0, 1, 0, 0, 972, 0, 0 ], [ 14, 0, 0.6282, 0.7564, 0, 0.66, 1, 799, 4, 0, 0, 0, 0, 0, 1 ] ]
[ "from utils.start_cpp import start_cpp", "numpy_util_code = start_cpp() + \"\"\"\n#ifndef NUMPY_UTIL_CODE\n#define NUMPY_UTIL_CODE\n\nfloat & Float1D(PyArrayObject * arr, int index = 0)\n{\n return *(float*)(arr->data + index*arr->strides[0]);\n}" ]
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.2857, 0.0179, 0, 0.66, 0, 192, 0, 1, 0, 0, 192, 0, 0 ], [ 1, 0, 0.3036, 0.0179, 0, 0.66, 0.0385, 905, 0, 1, 0, 0, 905, 0, 0 ], [ 1, 0, 0.3214, 0.0179, 0, ...
[ "import cvarray", "import mp_map", "import prog_bar", "import numpy_help_cpp", "import python_obj_cpp", "import matrix_cpp", "import gamma_cpp", "import setProcName", "import start_cpp", "import make", "import doc_gen", "doc = doc_gen.DocGen('utils', 'Utilities/Miscellaneous', 'Library of misc...
# Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0818, 0.0063, 0, 0.66, 0, 88, 0, 1, 0, 0, 88, 0, 0 ], [ 1, 0, 0.0881, 0.0063, 0, 0.66, 0.0909, 715, 0, 1, 0, 0, 715, 0, 0 ], [ 1, 0, 0.0943, 0.0063, 0, 0....
[ "import unittest", "import random", "import math", "from scipy.special import gammaln, psi, polygamma", "from scipy import weave", "from utils.start_cpp import start_cpp", "gamma_code = start_cpp() + \"\"\"\n#ifndef GAMMA_CODE\n#define GAMMA_CODE\n\n#include <cmath>\n\n// Returns the natural logarithm o...
# -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.5, 0.0333, 0, 0.66, 0, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 1, 0, 0.5333, 0.0333, 0, 0.66, 0.5, 154, 0, 1, 0, 0, 154, 0, 0 ], [ 2, 0, 0.8333, 0.3667, 0, 0.66, ...
[ "import inspect", "import hashlib", "def start_cpp(hash_str = None):\n \"\"\"This method does two things - firstly it adds the correct line numbers to scipy.weave code (Good for debugging) and secondly it can optionaly inserts a hash code of some other code into the code. This latter feature is useful for work...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.2031, 0.0156, 0, 0.66, 0, 509, 0, 1, 0, 0, 509, 0, 0 ], [ 1, 0, 0.2188, 0.0156, 0, 0.66, 0.125, 79, 0, 1, 0, 0, 79, 0, 0 ], [ 1, 0, 0.2344, 0.0156, 0, 0.6...
[ "import sys", "import os.path", "import tempfile", "import shutil", "from distutils.core import setup, Extension", "import distutils.ccompiler", "import distutils.dep_util", "try:\n __default_compiler = distutils.ccompiler.new_compiler()\nexcept:\n __default_compiler = None", " __default_compiler...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0634, 0.0049, 0, 0.66, 0, 291, 0, 1, 0, 0, 291, 0, 0 ], [ 1, 0, 0.0683, 0.0049, 0, 0.66, 0.5, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 3, 0, 0.5439, 0.9171, 0, 0.6...
[ "import pydoc", "import inspect", "class DocGen:\n \"\"\"A helper class that is used to generate documentation for the system. Outputs multiple formats simultaneously, specifically html for local reading with a webbrowser and the markup used by the wiki system on Google code.\"\"\"\n def __init__(self, name, ...
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.3636, 0.0227, 0, 0.66, 0, 182, 0, 1, 0, 0, 182, 0, 0 ], [ 2, 0, 0.5682, 0.25, 0, 0.66, 0.5, 903, 0, 1, 0, 0, 0, 0, 9 ], [ 8, 1, 0.4773, 0.0227, 1, 0.66, ...
[ "from ctypes import *", "def setProcName(name):\n \"\"\"Sets the process name, linux only - useful for those programs where you might want to do a killall, but don't want to slaughter all the other python processes. Note that there are multiple mechanisms, and that the given new name can be shortened by differin...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1456, 0.0097, 0, 0.66, 0, 901, 0, 1, 0, 0, 901, 0, 0 ], [ 1, 0, 0.1553, 0.0097, 0, 0.66, 0.1111, 99, 0, 1, 0, 0, 99, 0, 0 ], [ 1, 0, 0.1748, 0.0097, 0, 0....
[ "import multiprocessing as mp", "import multiprocessing.synchronize # To make sure we have all the functionality.", "import types", "import marshal", "import unittest", "def repeat(x):\n \"\"\"A generator that repeats the input forever - can be used with the mp_map function to give data to a function tha...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1923, 0.0128, 0, 0.66, 0, 972, 0, 1, 0, 0, 972, 0, 0 ], [ 14, 0, 0.6282, 0.7564, 0, 0.66, 1, 799, 4, 0, 0, 0, 0, 0, 1 ] ]
[ "from utils.start_cpp import start_cpp", "numpy_util_code = start_cpp() + \"\"\"\n#ifndef NUMPY_UTIL_CODE\n#define NUMPY_UTIL_CODE\n\nfloat & Float1D(PyArrayObject * arr, int index = 0)\n{\n return *(float*)(arr->data + index*arr->strides[0]);\n}" ]
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.2857, 0.0179, 0, 0.66, 0, 192, 0, 1, 0, 0, 192, 0, 0 ], [ 1, 0, 0.3036, 0.0179, 0, 0.66, 0.0385, 905, 0, 1, 0, 0, 905, 0, 0 ], [ 1, 0, 0.3214, 0.0179, 0, ...
[ "import cvarray", "import mp_map", "import prog_bar", "import numpy_help_cpp", "import python_obj_cpp", "import matrix_cpp", "import gamma_cpp", "import setProcName", "import start_cpp", "import make", "import doc_gen", "doc = doc_gen.DocGen('utils', 'Utilities/Miscellaneous', 'Library of misc...
# Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0818, 0.0063, 0, 0.66, 0, 88, 0, 1, 0, 0, 88, 0, 0 ], [ 1, 0, 0.0881, 0.0063, 0, 0.66, 0.0909, 715, 0, 1, 0, 0, 715, 0, 0 ], [ 1, 0, 0.0943, 0.0063, 0, 0....
[ "import unittest", "import random", "import math", "from scipy.special import gammaln, psi, polygamma", "from scipy import weave", "from utils.start_cpp import start_cpp", "gamma_code = start_cpp() + \"\"\"\n#ifndef GAMMA_CODE\n#define GAMMA_CODE\n\n#include <cmath>\n\n// Returns the natural logarithm o...
# -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.5, 0.0333, 0, 0.66, 0, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 1, 0, 0.5333, 0.0333, 0, 0.66, 0.5, 154, 0, 1, 0, 0, 154, 0, 0 ], [ 2, 0, 0.8333, 0.3667, 0, 0.66, ...
[ "import inspect", "import hashlib", "def start_cpp(hash_str = None):\n \"\"\"This method does two things - firstly it adds the correct line numbers to scipy.weave code (Good for debugging) and secondly it can optionaly inserts a hash code of some other code into the code. This latter feature is useful for work...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.2031, 0.0156, 0, 0.66, 0, 509, 0, 1, 0, 0, 509, 0, 0 ], [ 1, 0, 0.2188, 0.0156, 0, 0.66, 0.125, 79, 0, 1, 0, 0, 79, 0, 0 ], [ 1, 0, 0.2344, 0.0156, 0, 0.6...
[ "import sys", "import os.path", "import tempfile", "import shutil", "from distutils.core import setup, Extension", "import distutils.ccompiler", "import distutils.dep_util", "try:\n __default_compiler = distutils.ccompiler.new_compiler()\nexcept:\n __default_compiler = None", " __default_compiler...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0634, 0.0049, 0, 0.66, 0, 291, 0, 1, 0, 0, 291, 0, 0 ], [ 1, 0, 0.0683, 0.0049, 0, 0.66, 0.5, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 3, 0, 0.5439, 0.9171, 0, 0.6...
[ "import pydoc", "import inspect", "class DocGen:\n \"\"\"A helper class that is used to generate documentation for the system. Outputs multiple formats simultaneously, specifically html for local reading with a webbrowser and the markup used by the wiki system on Google code.\"\"\"\n def __init__(self, name, ...
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.3636, 0.0227, 0, 0.66, 0, 182, 0, 1, 0, 0, 182, 0, 0 ], [ 2, 0, 0.5682, 0.25, 0, 0.66, 0.5, 903, 0, 1, 0, 0, 0, 0, 9 ], [ 8, 1, 0.4773, 0.0227, 1, 0.04, ...
[ "from ctypes import *", "def setProcName(name):\n \"\"\"Sets the process name, linux only - useful for those programs where you might want to do a killall, but don't want to slaughter all the other python processes. Note that there are multiple mechanisms, and that the given new name can be shortened by differin...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1456, 0.0097, 0, 0.66, 0, 901, 0, 1, 0, 0, 901, 0, 0 ], [ 1, 0, 0.1553, 0.0097, 0, 0.66, 0.1111, 99, 0, 1, 0, 0, 99, 0, 0 ], [ 1, 0, 0.1748, 0.0097, 0, 0....
[ "import multiprocessing as mp", "import multiprocessing.synchronize # To make sure we have all the functionality.", "import types", "import marshal", "import unittest", "def repeat(x):\n \"\"\"A generator that repeats the input forever - can be used with the mp_map function to give data to a function tha...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1923, 0.0128, 0, 0.66, 0, 972, 0, 1, 0, 0, 972, 0, 0 ], [ 14, 0, 0.6282, 0.7564, 0, 0.66, 1, 799, 4, 0, 0, 0, 0, 0, 1 ] ]
[ "from utils.start_cpp import start_cpp", "numpy_util_code = start_cpp() + \"\"\"\n#ifndef NUMPY_UTIL_CODE\n#define NUMPY_UTIL_CODE\n\nfloat & Float1D(PyArrayObject * arr, int index = 0)\n{\n return *(float*)(arr->data + index*arr->strides[0]);\n}" ]
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.2857, 0.0179, 0, 0.66, 0, 192, 0, 1, 0, 0, 192, 0, 0 ], [ 1, 0, 0.3036, 0.0179, 0, 0.66, 0.0385, 905, 0, 1, 0, 0, 905, 0, 0 ], [ 1, 0, 0.3214, 0.0179, 0, ...
[ "import cvarray", "import mp_map", "import prog_bar", "import numpy_help_cpp", "import python_obj_cpp", "import matrix_cpp", "import gamma_cpp", "import setProcName", "import start_cpp", "import make", "import doc_gen", "doc = doc_gen.DocGen('utils', 'Utilities/Miscellaneous', 'Library of misc...
# Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0818, 0.0063, 0, 0.66, 0, 88, 0, 1, 0, 0, 88, 0, 0 ], [ 1, 0, 0.0881, 0.0063, 0, 0.66, 0.0909, 715, 0, 1, 0, 0, 715, 0, 0 ], [ 1, 0, 0.0943, 0.0063, 0, 0....
[ "import unittest", "import random", "import math", "from scipy.special import gammaln, psi, polygamma", "from scipy import weave", "from utils.start_cpp import start_cpp", "gamma_code = start_cpp() + \"\"\"\n#ifndef GAMMA_CODE\n#define GAMMA_CODE\n\n#include <cmath>\n\n// Returns the natural logarithm o...
# -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.5, 0.0333, 0, 0.66, 0, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 1, 0, 0.5333, 0.0333, 0, 0.66, 0.5, 154, 0, 1, 0, 0, 154, 0, 0 ], [ 2, 0, 0.8333, 0.3667, 0, 0.66, ...
[ "import inspect", "import hashlib", "def start_cpp(hash_str = None):\n \"\"\"This method does two things - firstly it adds the correct line numbers to scipy.weave code (Good for debugging) and secondly it can optionaly inserts a hash code of some other code into the code. This latter feature is useful for work...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.2031, 0.0156, 0, 0.66, 0, 509, 0, 1, 0, 0, 509, 0, 0 ], [ 1, 0, 0.2188, 0.0156, 0, 0.66, 0.125, 79, 0, 1, 0, 0, 79, 0, 0 ], [ 1, 0, 0.2344, 0.0156, 0, 0.6...
[ "import sys", "import os.path", "import tempfile", "import shutil", "from distutils.core import setup, Extension", "import distutils.ccompiler", "import distutils.dep_util", "try:\n __default_compiler = distutils.ccompiler.new_compiler()\nexcept:\n __default_compiler = None", " __default_compiler...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0634, 0.0049, 0, 0.66, 0, 291, 0, 1, 0, 0, 291, 0, 0 ], [ 1, 0, 0.0683, 0.0049, 0, 0.66, 0.5, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 3, 0, 0.5439, 0.9171, 0, 0.6...
[ "import pydoc", "import inspect", "class DocGen:\n \"\"\"A helper class that is used to generate documentation for the system. Outputs multiple formats simultaneously, specifically html for local reading with a webbrowser and the markup used by the wiki system on Google code.\"\"\"\n def __init__(self, name, ...
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.3636, 0.0227, 0, 0.66, 0, 182, 0, 1, 0, 0, 182, 0, 0 ], [ 2, 0, 0.5682, 0.25, 0, 0.66, 0.5, 903, 0, 1, 0, 0, 0, 0, 9 ], [ 8, 1, 0.4773, 0.0227, 1, 0.43, ...
[ "from ctypes import *", "def setProcName(name):\n \"\"\"Sets the process name, linux only - useful for those programs where you might want to do a killall, but don't want to slaughter all the other python processes. Note that there are multiple mechanisms, and that the given new name can be shortened by differin...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1456, 0.0097, 0, 0.66, 0, 901, 0, 1, 0, 0, 901, 0, 0 ], [ 1, 0, 0.1553, 0.0097, 0, 0.66, 0.1111, 99, 0, 1, 0, 0, 99, 0, 0 ], [ 1, 0, 0.1748, 0.0097, 0, 0....
[ "import multiprocessing as mp", "import multiprocessing.synchronize # To make sure we have all the functionality.", "import types", "import marshal", "import unittest", "def repeat(x):\n \"\"\"A generator that repeats the input forever - can be used with the mp_map function to give data to a function tha...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1923, 0.0128, 0, 0.66, 0, 972, 0, 1, 0, 0, 972, 0, 0 ], [ 14, 0, 0.6282, 0.7564, 0, 0.66, 1, 799, 4, 0, 0, 0, 0, 0, 1 ] ]
[ "from utils.start_cpp import start_cpp", "numpy_util_code = start_cpp() + \"\"\"\n#ifndef NUMPY_UTIL_CODE\n#define NUMPY_UTIL_CODE\n\nfloat & Float1D(PyArrayObject * arr, int index = 0)\n{\n return *(float*)(arr->data + index*arr->strides[0]);\n}" ]
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.2857, 0.0179, 0, 0.66, 0, 192, 0, 1, 0, 0, 192, 0, 0 ], [ 1, 0, 0.3036, 0.0179, 0, 0.66, 0.0385, 905, 0, 1, 0, 0, 905, 0, 0 ], [ 1, 0, 0.3214, 0.0179, 0, ...
[ "import cvarray", "import mp_map", "import prog_bar", "import numpy_help_cpp", "import python_obj_cpp", "import matrix_cpp", "import gamma_cpp", "import setProcName", "import start_cpp", "import make", "import doc_gen", "doc = doc_gen.DocGen('utils', 'Utilities/Miscellaneous', 'Library of misc...
# Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0818, 0.0063, 0, 0.66, 0, 88, 0, 1, 0, 0, 88, 0, 0 ], [ 1, 0, 0.0881, 0.0063, 0, 0.66, 0.0909, 715, 0, 1, 0, 0, 715, 0, 0 ], [ 1, 0, 0.0943, 0.0063, 0, 0....
[ "import unittest", "import random", "import math", "from scipy.special import gammaln, psi, polygamma", "from scipy import weave", "from utils.start_cpp import start_cpp", "gamma_code = start_cpp() + \"\"\"\n#ifndef GAMMA_CODE\n#define GAMMA_CODE\n\n#include <cmath>\n\n// Returns the natural logarithm o...
# -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.5, 0.0333, 0, 0.66, 0, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 1, 0, 0.5333, 0.0333, 0, 0.66, 0.5, 154, 0, 1, 0, 0, 154, 0, 0 ], [ 2, 0, 0.8333, 0.3667, 0, 0.66, ...
[ "import inspect", "import hashlib", "def start_cpp(hash_str = None):\n \"\"\"This method does two things - firstly it adds the correct line numbers to scipy.weave code (Good for debugging) and secondly it can optionaly inserts a hash code of some other code into the code. This latter feature is useful for work...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.2031, 0.0156, 0, 0.66, 0, 509, 0, 1, 0, 0, 509, 0, 0 ], [ 1, 0, 0.2188, 0.0156, 0, 0.66, 0.125, 79, 0, 1, 0, 0, 79, 0, 0 ], [ 1, 0, 0.2344, 0.0156, 0, 0.6...
[ "import sys", "import os.path", "import tempfile", "import shutil", "from distutils.core import setup, Extension", "import distutils.ccompiler", "import distutils.dep_util", "try:\n __default_compiler = distutils.ccompiler.new_compiler()\nexcept:\n __default_compiler = None", " __default_compiler...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0634, 0.0049, 0, 0.66, 0, 291, 0, 1, 0, 0, 291, 0, 0 ], [ 1, 0, 0.0683, 0.0049, 0, 0.66, 0.5, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 3, 0, 0.5439, 0.9171, 0, 0.6...
[ "import pydoc", "import inspect", "class DocGen:\n \"\"\"A helper class that is used to generate documentation for the system. Outputs multiple formats simultaneously, specifically html for local reading with a webbrowser and the markup used by the wiki system on Google code.\"\"\"\n def __init__(self, name, ...
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.3636, 0.0227, 0, 0.66, 0, 182, 0, 1, 0, 0, 182, 0, 0 ], [ 2, 0, 0.5682, 0.25, 0, 0.66, 0.5, 903, 0, 1, 0, 0, 0, 0, 9 ], [ 8, 1, 0.4773, 0.0227, 1, 0.63, ...
[ "from ctypes import *", "def setProcName(name):\n \"\"\"Sets the process name, linux only - useful for those programs where you might want to do a killall, but don't want to slaughter all the other python processes. Note that there are multiple mechanisms, and that the given new name can be shortened by differin...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1456, 0.0097, 0, 0.66, 0, 901, 0, 1, 0, 0, 901, 0, 0 ], [ 1, 0, 0.1553, 0.0097, 0, 0.66, 0.1111, 99, 0, 1, 0, 0, 99, 0, 0 ], [ 1, 0, 0.1748, 0.0097, 0, 0....
[ "import multiprocessing as mp", "import multiprocessing.synchronize # To make sure we have all the functionality.", "import types", "import marshal", "import unittest", "def repeat(x):\n \"\"\"A generator that repeats the input forever - can be used with the mp_map function to give data to a function tha...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1923, 0.0128, 0, 0.66, 0, 972, 0, 1, 0, 0, 972, 0, 0 ], [ 14, 0, 0.6282, 0.7564, 0, 0.66, 1, 799, 4, 0, 0, 0, 0, 0, 1 ] ]
[ "from utils.start_cpp import start_cpp", "numpy_util_code = start_cpp() + \"\"\"\n#ifndef NUMPY_UTIL_CODE\n#define NUMPY_UTIL_CODE\n\nfloat & Float1D(PyArrayObject * arr, int index = 0)\n{\n return *(float*)(arr->data + index*arr->strides[0]);\n}" ]
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.2857, 0.0179, 0, 0.66, 0, 192, 0, 1, 0, 0, 192, 0, 0 ], [ 1, 0, 0.3036, 0.0179, 0, 0.66, 0.0385, 905, 0, 1, 0, 0, 905, 0, 0 ], [ 1, 0, 0.3214, 0.0179, 0, ...
[ "import cvarray", "import mp_map", "import prog_bar", "import numpy_help_cpp", "import python_obj_cpp", "import matrix_cpp", "import gamma_cpp", "import setProcName", "import start_cpp", "import make", "import doc_gen", "doc = doc_gen.DocGen('utils', 'Utilities/Miscellaneous', 'Library of misc...
# Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0818, 0.0063, 0, 0.66, 0, 88, 0, 1, 0, 0, 88, 0, 0 ], [ 1, 0, 0.0881, 0.0063, 0, 0.66, 0.0909, 715, 0, 1, 0, 0, 715, 0, 0 ], [ 1, 0, 0.0943, 0.0063, 0, 0....
[ "import unittest", "import random", "import math", "from scipy.special import gammaln, psi, polygamma", "from scipy import weave", "from utils.start_cpp import start_cpp", "gamma_code = start_cpp() + \"\"\"\n#ifndef GAMMA_CODE\n#define GAMMA_CODE\n\n#include <cmath>\n\n// Returns the natural logarithm o...
# -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.5, 0.0333, 0, 0.66, 0, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 1, 0, 0.5333, 0.0333, 0, 0.66, 0.5, 154, 0, 1, 0, 0, 154, 0, 0 ], [ 2, 0, 0.8333, 0.3667, 0, 0.66, ...
[ "import inspect", "import hashlib", "def start_cpp(hash_str = None):\n \"\"\"This method does two things - firstly it adds the correct line numbers to scipy.weave code (Good for debugging) and secondly it can optionaly inserts a hash code of some other code into the code. This latter feature is useful for work...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.2031, 0.0156, 0, 0.66, 0, 509, 0, 1, 0, 0, 509, 0, 0 ], [ 1, 0, 0.2188, 0.0156, 0, 0.66, 0.125, 79, 0, 1, 0, 0, 79, 0, 0 ], [ 1, 0, 0.2344, 0.0156, 0, 0.6...
[ "import sys", "import os.path", "import tempfile", "import shutil", "from distutils.core import setup, Extension", "import distutils.ccompiler", "import distutils.dep_util", "try:\n __default_compiler = distutils.ccompiler.new_compiler()\nexcept:\n __default_compiler = None", " __default_compiler...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0634, 0.0049, 0, 0.66, 0, 291, 0, 1, 0, 0, 291, 0, 0 ], [ 1, 0, 0.0683, 0.0049, 0, 0.66, 0.5, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 3, 0, 0.5439, 0.9171, 0, 0.6...
[ "import pydoc", "import inspect", "class DocGen:\n \"\"\"A helper class that is used to generate documentation for the system. Outputs multiple formats simultaneously, specifically html for local reading with a webbrowser and the markup used by the wiki system on Google code.\"\"\"\n def __init__(self, name, ...
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.3636, 0.0227, 0, 0.66, 0, 182, 0, 1, 0, 0, 182, 0, 0 ], [ 2, 0, 0.5682, 0.25, 0, 0.66, 0.5, 903, 0, 1, 0, 0, 0, 0, 9 ], [ 8, 1, 0.4773, 0.0227, 1, 0.95, ...
[ "from ctypes import *", "def setProcName(name):\n \"\"\"Sets the process name, linux only - useful for those programs where you might want to do a killall, but don't want to slaughter all the other python processes. Note that there are multiple mechanisms, and that the given new name can be shortened by differin...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1456, 0.0097, 0, 0.66, 0, 901, 0, 1, 0, 0, 901, 0, 0 ], [ 1, 0, 0.1553, 0.0097, 0, 0.66, 0.1111, 99, 0, 1, 0, 0, 99, 0, 0 ], [ 1, 0, 0.1748, 0.0097, 0, 0....
[ "import multiprocessing as mp", "import multiprocessing.synchronize # To make sure we have all the functionality.", "import types", "import marshal", "import unittest", "def repeat(x):\n \"\"\"A generator that repeats the input forever - can be used with the mp_map function to give data to a function tha...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1923, 0.0128, 0, 0.66, 0, 972, 0, 1, 0, 0, 972, 0, 0 ], [ 14, 0, 0.6282, 0.7564, 0, 0.66, 1, 799, 4, 0, 0, 0, 0, 0, 1 ] ]
[ "from utils.start_cpp import start_cpp", "numpy_util_code = start_cpp() + \"\"\"\n#ifndef NUMPY_UTIL_CODE\n#define NUMPY_UTIL_CODE\n\nfloat & Float1D(PyArrayObject * arr, int index = 0)\n{\n return *(float*)(arr->data + index*arr->strides[0]);\n}" ]
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.2857, 0.0179, 0, 0.66, 0, 192, 0, 1, 0, 0, 192, 0, 0 ], [ 1, 0, 0.3036, 0.0179, 0, 0.66, 0.0385, 905, 0, 1, 0, 0, 905, 0, 0 ], [ 1, 0, 0.3214, 0.0179, 0, ...
[ "import cvarray", "import mp_map", "import prog_bar", "import numpy_help_cpp", "import python_obj_cpp", "import matrix_cpp", "import gamma_cpp", "import setProcName", "import start_cpp", "import make", "import doc_gen", "doc = doc_gen.DocGen('utils', 'Utilities/Miscellaneous', 'Library of misc...
# Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0818, 0.0063, 0, 0.66, 0, 88, 0, 1, 0, 0, 88, 0, 0 ], [ 1, 0, 0.0881, 0.0063, 0, 0.66, 0.0909, 715, 0, 1, 0, 0, 715, 0, 0 ], [ 1, 0, 0.0943, 0.0063, 0, 0....
[ "import unittest", "import random", "import math", "from scipy.special import gammaln, psi, polygamma", "from scipy import weave", "from utils.start_cpp import start_cpp", "gamma_code = start_cpp() + \"\"\"\n#ifndef GAMMA_CODE\n#define GAMMA_CODE\n\n#include <cmath>\n\n// Returns the natural logarithm o...
# -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.5, 0.0333, 0, 0.66, 0, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 1, 0, 0.5333, 0.0333, 0, 0.66, 0.5, 154, 0, 1, 0, 0, 154, 0, 0 ], [ 2, 0, 0.8333, 0.3667, 0, 0.66, ...
[ "import inspect", "import hashlib", "def start_cpp(hash_str = None):\n \"\"\"This method does two things - firstly it adds the correct line numbers to scipy.weave code (Good for debugging) and secondly it can optionaly inserts a hash code of some other code into the code. This latter feature is useful for work...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.2031, 0.0156, 0, 0.66, 0, 509, 0, 1, 0, 0, 509, 0, 0 ], [ 1, 0, 0.2188, 0.0156, 0, 0.66, 0.125, 79, 0, 1, 0, 0, 79, 0, 0 ], [ 1, 0, 0.2344, 0.0156, 0, 0.6...
[ "import sys", "import os.path", "import tempfile", "import shutil", "from distutils.core import setup, Extension", "import distutils.ccompiler", "import distutils.dep_util", "try:\n __default_compiler = distutils.ccompiler.new_compiler()\nexcept:\n __default_compiler = None", " __default_compiler...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0634, 0.0049, 0, 0.66, 0, 291, 0, 1, 0, 0, 291, 0, 0 ], [ 1, 0, 0.0683, 0.0049, 0, 0.66, 0.5, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 3, 0, 0.5439, 0.9171, 0, 0.6...
[ "import pydoc", "import inspect", "class DocGen:\n \"\"\"A helper class that is used to generate documentation for the system. Outputs multiple formats simultaneously, specifically html for local reading with a webbrowser and the markup used by the wiki system on Google code.\"\"\"\n def __init__(self, name, ...
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.3636, 0.0227, 0, 0.66, 0, 182, 0, 1, 0, 0, 182, 0, 0 ], [ 2, 0, 0.5682, 0.25, 0, 0.66, 0.5, 903, 0, 1, 0, 0, 0, 0, 9 ], [ 8, 1, 0.4773, 0.0227, 1, 0.43, ...
[ "from ctypes import *", "def setProcName(name):\n \"\"\"Sets the process name, linux only - useful for those programs where you might want to do a killall, but don't want to slaughter all the other python processes. Note that there are multiple mechanisms, and that the given new name can be shortened by differin...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1456, 0.0097, 0, 0.66, 0, 901, 0, 1, 0, 0, 901, 0, 0 ], [ 1, 0, 0.1553, 0.0097, 0, 0.66, 0.1111, 99, 0, 1, 0, 0, 99, 0, 0 ], [ 1, 0, 0.1748, 0.0097, 0, 0....
[ "import multiprocessing as mp", "import multiprocessing.synchronize # To make sure we have all the functionality.", "import types", "import marshal", "import unittest", "def repeat(x):\n \"\"\"A generator that repeats the input forever - can be used with the mp_map function to give data to a function tha...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1923, 0.0128, 0, 0.66, 0, 972, 0, 1, 0, 0, 972, 0, 0 ], [ 14, 0, 0.6282, 0.7564, 0, 0.66, 1, 799, 4, 0, 0, 0, 0, 0, 1 ] ]
[ "from utils.start_cpp import start_cpp", "numpy_util_code = start_cpp() + \"\"\"\n#ifndef NUMPY_UTIL_CODE\n#define NUMPY_UTIL_CODE\n\nfloat & Float1D(PyArrayObject * arr, int index = 0)\n{\n return *(float*)(arr->data + index*arr->strides[0]);\n}" ]
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.2857, 0.0179, 0, 0.66, 0, 192, 0, 1, 0, 0, 192, 0, 0 ], [ 1, 0, 0.3036, 0.0179, 0, 0.66, 0.0385, 905, 0, 1, 0, 0, 905, 0, 0 ], [ 1, 0, 0.3214, 0.0179, 0, ...
[ "import cvarray", "import mp_map", "import prog_bar", "import numpy_help_cpp", "import python_obj_cpp", "import matrix_cpp", "import gamma_cpp", "import setProcName", "import start_cpp", "import make", "import doc_gen", "doc = doc_gen.DocGen('utils', 'Utilities/Miscellaneous', 'Library of misc...
# Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0818, 0.0063, 0, 0.66, 0, 88, 0, 1, 0, 0, 88, 0, 0 ], [ 1, 0, 0.0881, 0.0063, 0, 0.66, 0.0909, 715, 0, 1, 0, 0, 715, 0, 0 ], [ 1, 0, 0.0943, 0.0063, 0, 0....
[ "import unittest", "import random", "import math", "from scipy.special import gammaln, psi, polygamma", "from scipy import weave", "from utils.start_cpp import start_cpp", "gamma_code = start_cpp() + \"\"\"\n#ifndef GAMMA_CODE\n#define GAMMA_CODE\n\n#include <cmath>\n\n// Returns the natural logarithm o...
# -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.5, 0.0333, 0, 0.66, 0, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 1, 0, 0.5333, 0.0333, 0, 0.66, 0.5, 154, 0, 1, 0, 0, 154, 0, 0 ], [ 2, 0, 0.8333, 0.3667, 0, 0.66, ...
[ "import inspect", "import hashlib", "def start_cpp(hash_str = None):\n \"\"\"This method does two things - firstly it adds the correct line numbers to scipy.weave code (Good for debugging) and secondly it can optionaly inserts a hash code of some other code into the code. This latter feature is useful for work...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.2031, 0.0156, 0, 0.66, 0, 509, 0, 1, 0, 0, 509, 0, 0 ], [ 1, 0, 0.2188, 0.0156, 0, 0.66, 0.125, 79, 0, 1, 0, 0, 79, 0, 0 ], [ 1, 0, 0.2344, 0.0156, 0, 0.6...
[ "import sys", "import os.path", "import tempfile", "import shutil", "from distutils.core import setup, Extension", "import distutils.ccompiler", "import distutils.dep_util", "try:\n __default_compiler = distutils.ccompiler.new_compiler()\nexcept:\n __default_compiler = None", " __default_compiler...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0634, 0.0049, 0, 0.66, 0, 291, 0, 1, 0, 0, 291, 0, 0 ], [ 1, 0, 0.0683, 0.0049, 0, 0.66, 0.5, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 3, 0, 0.5439, 0.9171, 0, 0.6...
[ "import pydoc", "import inspect", "class DocGen:\n \"\"\"A helper class that is used to generate documentation for the system. Outputs multiple formats simultaneously, specifically html for local reading with a webbrowser and the markup used by the wiki system on Google code.\"\"\"\n def __init__(self, name, ...
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.3636, 0.0227, 0, 0.66, 0, 182, 0, 1, 0, 0, 182, 0, 0 ], [ 2, 0, 0.5682, 0.25, 0, 0.66, 0.5, 903, 0, 1, 0, 0, 0, 0, 9 ], [ 8, 1, 0.4773, 0.0227, 1, 0.89, ...
[ "from ctypes import *", "def setProcName(name):\n \"\"\"Sets the process name, linux only - useful for those programs where you might want to do a killall, but don't want to slaughter all the other python processes. Note that there are multiple mechanisms, and that the given new name can be shortened by differin...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1456, 0.0097, 0, 0.66, 0, 901, 0, 1, 0, 0, 901, 0, 0 ], [ 1, 0, 0.1553, 0.0097, 0, 0.66, 0.1111, 99, 0, 1, 0, 0, 99, 0, 0 ], [ 1, 0, 0.1748, 0.0097, 0, 0....
[ "import multiprocessing as mp", "import multiprocessing.synchronize # To make sure we have all the functionality.", "import types", "import marshal", "import unittest", "def repeat(x):\n \"\"\"A generator that repeats the input forever - can be used with the mp_map function to give data to a function tha...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1923, 0.0128, 0, 0.66, 0, 972, 0, 1, 0, 0, 972, 0, 0 ], [ 14, 0, 0.6282, 0.7564, 0, 0.66, 1, 799, 4, 0, 0, 0, 0, 0, 1 ] ]
[ "from utils.start_cpp import start_cpp", "numpy_util_code = start_cpp() + \"\"\"\n#ifndef NUMPY_UTIL_CODE\n#define NUMPY_UTIL_CODE\n\nfloat & Float1D(PyArrayObject * arr, int index = 0)\n{\n return *(float*)(arr->data + index*arr->strides[0]);\n}" ]
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.2857, 0.0179, 0, 0.66, 0, 192, 0, 1, 0, 0, 192, 0, 0 ], [ 1, 0, 0.3036, 0.0179, 0, 0.66, 0.0385, 905, 0, 1, 0, 0, 905, 0, 0 ], [ 1, 0, 0.3214, 0.0179, 0, ...
[ "import cvarray", "import mp_map", "import prog_bar", "import numpy_help_cpp", "import python_obj_cpp", "import matrix_cpp", "import gamma_cpp", "import setProcName", "import start_cpp", "import make", "import doc_gen", "doc = doc_gen.DocGen('utils', 'Utilities/Miscellaneous', 'Library of misc...
# Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0818, 0.0063, 0, 0.66, 0, 88, 0, 1, 0, 0, 88, 0, 0 ], [ 1, 0, 0.0881, 0.0063, 0, 0.66, 0.0909, 715, 0, 1, 0, 0, 715, 0, 0 ], [ 1, 0, 0.0943, 0.0063, 0, 0....
[ "import unittest", "import random", "import math", "from scipy.special import gammaln, psi, polygamma", "from scipy import weave", "from utils.start_cpp import start_cpp", "gamma_code = start_cpp() + \"\"\"\n#ifndef GAMMA_CODE\n#define GAMMA_CODE\n\n#include <cmath>\n\n// Returns the natural logarithm o...
# -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.5, 0.0333, 0, 0.66, 0, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 1, 0, 0.5333, 0.0333, 0, 0.66, 0.5, 154, 0, 1, 0, 0, 154, 0, 0 ], [ 2, 0, 0.8333, 0.3667, 0, 0.66, ...
[ "import inspect", "import hashlib", "def start_cpp(hash_str = None):\n \"\"\"This method does two things - firstly it adds the correct line numbers to scipy.weave code (Good for debugging) and secondly it can optionaly inserts a hash code of some other code into the code. This latter feature is useful for work...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.2031, 0.0156, 0, 0.66, 0, 509, 0, 1, 0, 0, 509, 0, 0 ], [ 1, 0, 0.2188, 0.0156, 0, 0.66, 0.125, 79, 0, 1, 0, 0, 79, 0, 0 ], [ 1, 0, 0.2344, 0.0156, 0, 0.6...
[ "import sys", "import os.path", "import tempfile", "import shutil", "from distutils.core import setup, Extension", "import distutils.ccompiler", "import distutils.dep_util", "try:\n __default_compiler = distutils.ccompiler.new_compiler()\nexcept:\n __default_compiler = None", " __default_compiler...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0634, 0.0049, 0, 0.66, 0, 291, 0, 1, 0, 0, 291, 0, 0 ], [ 1, 0, 0.0683, 0.0049, 0, 0.66, 0.5, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 3, 0, 0.5439, 0.9171, 0, 0.6...
[ "import pydoc", "import inspect", "class DocGen:\n \"\"\"A helper class that is used to generate documentation for the system. Outputs multiple formats simultaneously, specifically html for local reading with a webbrowser and the markup used by the wiki system on Google code.\"\"\"\n def __init__(self, name, ...
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.3636, 0.0227, 0, 0.66, 0, 182, 0, 1, 0, 0, 182, 0, 0 ], [ 2, 0, 0.5682, 0.25, 0, 0.66, 0.5, 903, 0, 1, 0, 0, 0, 0, 9 ], [ 8, 1, 0.4773, 0.0227, 1, 0.39, ...
[ "from ctypes import *", "def setProcName(name):\n \"\"\"Sets the process name, linux only - useful for those programs where you might want to do a killall, but don't want to slaughter all the other python processes. Note that there are multiple mechanisms, and that the given new name can be shortened by differin...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1456, 0.0097, 0, 0.66, 0, 901, 0, 1, 0, 0, 901, 0, 0 ], [ 1, 0, 0.1553, 0.0097, 0, 0.66, 0.1111, 99, 0, 1, 0, 0, 99, 0, 0 ], [ 1, 0, 0.1748, 0.0097, 0, 0....
[ "import multiprocessing as mp", "import multiprocessing.synchronize # To make sure we have all the functionality.", "import types", "import marshal", "import unittest", "def repeat(x):\n \"\"\"A generator that repeats the input forever - can be used with the mp_map function to give data to a function tha...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1923, 0.0128, 0, 0.66, 0, 972, 0, 1, 0, 0, 972, 0, 0 ], [ 14, 0, 0.6282, 0.7564, 0, 0.66, 1, 799, 4, 0, 0, 0, 0, 0, 1 ] ]
[ "from utils.start_cpp import start_cpp", "numpy_util_code = start_cpp() + \"\"\"\n#ifndef NUMPY_UTIL_CODE\n#define NUMPY_UTIL_CODE\n\nfloat & Float1D(PyArrayObject * arr, int index = 0)\n{\n return *(float*)(arr->data + index*arr->strides[0]);\n}" ]
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.2857, 0.0179, 0, 0.66, 0, 192, 0, 1, 0, 0, 192, 0, 0 ], [ 1, 0, 0.3036, 0.0179, 0, 0.66, 0.0385, 905, 0, 1, 0, 0, 905, 0, 0 ], [ 1, 0, 0.3214, 0.0179, 0, ...
[ "import cvarray", "import mp_map", "import prog_bar", "import numpy_help_cpp", "import python_obj_cpp", "import matrix_cpp", "import gamma_cpp", "import setProcName", "import start_cpp", "import make", "import doc_gen", "doc = doc_gen.DocGen('utils', 'Utilities/Miscellaneous', 'Library of misc...
# Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0818, 0.0063, 0, 0.66, 0, 88, 0, 1, 0, 0, 88, 0, 0 ], [ 1, 0, 0.0881, 0.0063, 0, 0.66, 0.0909, 715, 0, 1, 0, 0, 715, 0, 0 ], [ 1, 0, 0.0943, 0.0063, 0, 0....
[ "import unittest", "import random", "import math", "from scipy.special import gammaln, psi, polygamma", "from scipy import weave", "from utils.start_cpp import start_cpp", "gamma_code = start_cpp() + \"\"\"\n#ifndef GAMMA_CODE\n#define GAMMA_CODE\n\n#include <cmath>\n\n// Returns the natural logarithm o...
# -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.5, 0.0333, 0, 0.66, 0, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 1, 0, 0.5333, 0.0333, 0, 0.66, 0.5, 154, 0, 1, 0, 0, 154, 0, 0 ], [ 2, 0, 0.8333, 0.3667, 0, 0.66, ...
[ "import inspect", "import hashlib", "def start_cpp(hash_str = None):\n \"\"\"This method does two things - firstly it adds the correct line numbers to scipy.weave code (Good for debugging) and secondly it can optionaly inserts a hash code of some other code into the code. This latter feature is useful for work...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.2031, 0.0156, 0, 0.66, 0, 509, 0, 1, 0, 0, 509, 0, 0 ], [ 1, 0, 0.2188, 0.0156, 0, 0.66, 0.125, 79, 0, 1, 0, 0, 79, 0, 0 ], [ 1, 0, 0.2344, 0.0156, 0, 0.6...
[ "import sys", "import os.path", "import tempfile", "import shutil", "from distutils.core import setup, Extension", "import distutils.ccompiler", "import distutils.dep_util", "try:\n __default_compiler = distutils.ccompiler.new_compiler()\nexcept:\n __default_compiler = None", " __default_compiler...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0634, 0.0049, 0, 0.66, 0, 291, 0, 1, 0, 0, 291, 0, 0 ], [ 1, 0, 0.0683, 0.0049, 0, 0.66, 0.5, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 3, 0, 0.5439, 0.9171, 0, 0.6...
[ "import pydoc", "import inspect", "class DocGen:\n \"\"\"A helper class that is used to generate documentation for the system. Outputs multiple formats simultaneously, specifically html for local reading with a webbrowser and the markup used by the wiki system on Google code.\"\"\"\n def __init__(self, name, ...
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.3636, 0.0227, 0, 0.66, 0, 182, 0, 1, 0, 0, 182, 0, 0 ], [ 2, 0, 0.5682, 0.25, 0, 0.66, 0.5, 903, 0, 1, 0, 0, 0, 0, 9 ], [ 8, 1, 0.4773, 0.0227, 1, 0, ...
[ "from ctypes import *", "def setProcName(name):\n \"\"\"Sets the process name, linux only - useful for those programs where you might want to do a killall, but don't want to slaughter all the other python processes. Note that there are multiple mechanisms, and that the given new name can be shortened by differin...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1456, 0.0097, 0, 0.66, 0, 901, 0, 1, 0, 0, 901, 0, 0 ], [ 1, 0, 0.1553, 0.0097, 0, 0.66, 0.1111, 99, 0, 1, 0, 0, 99, 0, 0 ], [ 1, 0, 0.1748, 0.0097, 0, 0....
[ "import multiprocessing as mp", "import multiprocessing.synchronize # To make sure we have all the functionality.", "import types", "import marshal", "import unittest", "def repeat(x):\n \"\"\"A generator that repeats the input forever - can be used with the mp_map function to give data to a function tha...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1923, 0.0128, 0, 0.66, 0, 972, 0, 1, 0, 0, 972, 0, 0 ], [ 14, 0, 0.6282, 0.7564, 0, 0.66, 1, 799, 4, 0, 0, 0, 0, 0, 1 ] ]
[ "from utils.start_cpp import start_cpp", "numpy_util_code = start_cpp() + \"\"\"\n#ifndef NUMPY_UTIL_CODE\n#define NUMPY_UTIL_CODE\n\nfloat & Float1D(PyArrayObject * arr, int index = 0)\n{\n return *(float*)(arr->data + index*arr->strides[0]);\n}" ]
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.2857, 0.0179, 0, 0.66, 0, 192, 0, 1, 0, 0, 192, 0, 0 ], [ 1, 0, 0.3036, 0.0179, 0, 0.66, 0.0385, 905, 0, 1, 0, 0, 905, 0, 0 ], [ 1, 0, 0.3214, 0.0179, 0, ...
[ "import cvarray", "import mp_map", "import prog_bar", "import numpy_help_cpp", "import python_obj_cpp", "import matrix_cpp", "import gamma_cpp", "import setProcName", "import start_cpp", "import make", "import doc_gen", "doc = doc_gen.DocGen('utils', 'Utilities/Miscellaneous', 'Library of misc...
# Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0818, 0.0063, 0, 0.66, 0, 88, 0, 1, 0, 0, 88, 0, 0 ], [ 1, 0, 0.0881, 0.0063, 0, 0.66, 0.0909, 715, 0, 1, 0, 0, 715, 0, 0 ], [ 1, 0, 0.0943, 0.0063, 0, 0....
[ "import unittest", "import random", "import math", "from scipy.special import gammaln, psi, polygamma", "from scipy import weave", "from utils.start_cpp import start_cpp", "gamma_code = start_cpp() + \"\"\"\n#ifndef GAMMA_CODE\n#define GAMMA_CODE\n\n#include <cmath>\n\n// Returns the natural logarithm o...
# -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.5, 0.0333, 0, 0.66, 0, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 1, 0, 0.5333, 0.0333, 0, 0.66, 0.5, 154, 0, 1, 0, 0, 154, 0, 0 ], [ 2, 0, 0.8333, 0.3667, 0, 0.66, ...
[ "import inspect", "import hashlib", "def start_cpp(hash_str = None):\n \"\"\"This method does two things - firstly it adds the correct line numbers to scipy.weave code (Good for debugging) and secondly it can optionaly inserts a hash code of some other code into the code. This latter feature is useful for work...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.2031, 0.0156, 0, 0.66, 0, 509, 0, 1, 0, 0, 509, 0, 0 ], [ 1, 0, 0.2188, 0.0156, 0, 0.66, 0.125, 79, 0, 1, 0, 0, 79, 0, 0 ], [ 1, 0, 0.2344, 0.0156, 0, 0.6...
[ "import sys", "import os.path", "import tempfile", "import shutil", "from distutils.core import setup, Extension", "import distutils.ccompiler", "import distutils.dep_util", "try:\n __default_compiler = distutils.ccompiler.new_compiler()\nexcept:\n __default_compiler = None", " __default_compiler...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0634, 0.0049, 0, 0.66, 0, 291, 0, 1, 0, 0, 291, 0, 0 ], [ 1, 0, 0.0683, 0.0049, 0, 0.66, 0.5, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 3, 0, 0.5439, 0.9171, 0, 0.6...
[ "import pydoc", "import inspect", "class DocGen:\n \"\"\"A helper class that is used to generate documentation for the system. Outputs multiple formats simultaneously, specifically html for local reading with a webbrowser and the markup used by the wiki system on Google code.\"\"\"\n def __init__(self, name, ...
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.3636, 0.0227, 0, 0.66, 0, 182, 0, 1, 0, 0, 182, 0, 0 ], [ 2, 0, 0.5682, 0.25, 0, 0.66, 0.5, 903, 0, 1, 0, 0, 0, 0, 9 ], [ 8, 1, 0.4773, 0.0227, 1, 0.32, ...
[ "from ctypes import *", "def setProcName(name):\n \"\"\"Sets the process name, linux only - useful for those programs where you might want to do a killall, but don't want to slaughter all the other python processes. Note that there are multiple mechanisms, and that the given new name can be shortened by differin...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1456, 0.0097, 0, 0.66, 0, 901, 0, 1, 0, 0, 901, 0, 0 ], [ 1, 0, 0.1553, 0.0097, 0, 0.66, 0.1111, 99, 0, 1, 0, 0, 99, 0, 0 ], [ 1, 0, 0.1748, 0.0097, 0, 0....
[ "import multiprocessing as mp", "import multiprocessing.synchronize # To make sure we have all the functionality.", "import types", "import marshal", "import unittest", "def repeat(x):\n \"\"\"A generator that repeats the input forever - can be used with the mp_map function to give data to a function tha...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1923, 0.0128, 0, 0.66, 0, 972, 0, 1, 0, 0, 972, 0, 0 ], [ 14, 0, 0.6282, 0.7564, 0, 0.66, 1, 799, 4, 0, 0, 0, 0, 0, 1 ] ]
[ "from utils.start_cpp import start_cpp", "numpy_util_code = start_cpp() + \"\"\"\n#ifndef NUMPY_UTIL_CODE\n#define NUMPY_UTIL_CODE\n\nfloat & Float1D(PyArrayObject * arr, int index = 0)\n{\n return *(float*)(arr->data + index*arr->strides[0]);\n}" ]
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.2857, 0.0179, 0, 0.66, 0, 192, 0, 1, 0, 0, 192, 0, 0 ], [ 1, 0, 0.3036, 0.0179, 0, 0.66, 0.0385, 905, 0, 1, 0, 0, 905, 0, 0 ], [ 1, 0, 0.3214, 0.0179, 0, ...
[ "import cvarray", "import mp_map", "import prog_bar", "import numpy_help_cpp", "import python_obj_cpp", "import matrix_cpp", "import gamma_cpp", "import setProcName", "import start_cpp", "import make", "import doc_gen", "doc = doc_gen.DocGen('utils', 'Utilities/Miscellaneous', 'Library of misc...
# Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0818, 0.0063, 0, 0.66, 0, 88, 0, 1, 0, 0, 88, 0, 0 ], [ 1, 0, 0.0881, 0.0063, 0, 0.66, 0.0909, 715, 0, 1, 0, 0, 715, 0, 0 ], [ 1, 0, 0.0943, 0.0063, 0, 0....
[ "import unittest", "import random", "import math", "from scipy.special import gammaln, psi, polygamma", "from scipy import weave", "from utils.start_cpp import start_cpp", "gamma_code = start_cpp() + \"\"\"\n#ifndef GAMMA_CODE\n#define GAMMA_CODE\n\n#include <cmath>\n\n// Returns the natural logarithm o...
# -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.5, 0.0333, 0, 0.66, 0, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 1, 0, 0.5333, 0.0333, 0, 0.66, 0.5, 154, 0, 1, 0, 0, 154, 0, 0 ], [ 2, 0, 0.8333, 0.3667, 0, 0.66, ...
[ "import inspect", "import hashlib", "def start_cpp(hash_str = None):\n \"\"\"This method does two things - firstly it adds the correct line numbers to scipy.weave code (Good for debugging) and secondly it can optionaly inserts a hash code of some other code into the code. This latter feature is useful for work...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.2031, 0.0156, 0, 0.66, 0, 509, 0, 1, 0, 0, 509, 0, 0 ], [ 1, 0, 0.2188, 0.0156, 0, 0.66, 0.125, 79, 0, 1, 0, 0, 79, 0, 0 ], [ 1, 0, 0.2344, 0.0156, 0, 0.6...
[ "import sys", "import os.path", "import tempfile", "import shutil", "from distutils.core import setup, Extension", "import distutils.ccompiler", "import distutils.dep_util", "try:\n __default_compiler = distutils.ccompiler.new_compiler()\nexcept:\n __default_compiler = None", " __default_compiler...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0634, 0.0049, 0, 0.66, 0, 291, 0, 1, 0, 0, 291, 0, 0 ], [ 1, 0, 0.0683, 0.0049, 0, 0.66, 0.5, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 3, 0, 0.5439, 0.9171, 0, 0.6...
[ "import pydoc", "import inspect", "class DocGen:\n \"\"\"A helper class that is used to generate documentation for the system. Outputs multiple formats simultaneously, specifically html for local reading with a webbrowser and the markup used by the wiki system on Google code.\"\"\"\n def __init__(self, name, ...
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.3636, 0.0227, 0, 0.66, 0, 182, 0, 1, 0, 0, 182, 0, 0 ], [ 2, 0, 0.5682, 0.25, 0, 0.66, 0.5, 903, 0, 1, 0, 0, 0, 0, 9 ], [ 8, 1, 0.4773, 0.0227, 1, 0.36, ...
[ "from ctypes import *", "def setProcName(name):\n \"\"\"Sets the process name, linux only - useful for those programs where you might want to do a killall, but don't want to slaughter all the other python processes. Note that there are multiple mechanisms, and that the given new name can be shortened by differin...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1456, 0.0097, 0, 0.66, 0, 901, 0, 1, 0, 0, 901, 0, 0 ], [ 1, 0, 0.1553, 0.0097, 0, 0.66, 0.1111, 99, 0, 1, 0, 0, 99, 0, 0 ], [ 1, 0, 0.1748, 0.0097, 0, 0....
[ "import multiprocessing as mp", "import multiprocessing.synchronize # To make sure we have all the functionality.", "import types", "import marshal", "import unittest", "def repeat(x):\n \"\"\"A generator that repeats the input forever - can be used with the mp_map function to give data to a function tha...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1923, 0.0128, 0, 0.66, 0, 972, 0, 1, 0, 0, 972, 0, 0 ], [ 14, 0, 0.6282, 0.7564, 0, 0.66, 1, 799, 4, 0, 0, 0, 0, 0, 1 ] ]
[ "from utils.start_cpp import start_cpp", "numpy_util_code = start_cpp() + \"\"\"\n#ifndef NUMPY_UTIL_CODE\n#define NUMPY_UTIL_CODE\n\nfloat & Float1D(PyArrayObject * arr, int index = 0)\n{\n return *(float*)(arr->data + index*arr->strides[0]);\n}" ]
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.2857, 0.0179, 0, 0.66, 0, 192, 0, 1, 0, 0, 192, 0, 0 ], [ 1, 0, 0.3036, 0.0179, 0, 0.66, 0.0385, 905, 0, 1, 0, 0, 905, 0, 0 ], [ 1, 0, 0.3214, 0.0179, 0, ...
[ "import cvarray", "import mp_map", "import prog_bar", "import numpy_help_cpp", "import python_obj_cpp", "import matrix_cpp", "import gamma_cpp", "import setProcName", "import start_cpp", "import make", "import doc_gen", "doc = doc_gen.DocGen('utils', 'Utilities/Miscellaneous', 'Library of misc...
# Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0818, 0.0063, 0, 0.66, 0, 88, 0, 1, 0, 0, 88, 0, 0 ], [ 1, 0, 0.0881, 0.0063, 0, 0.66, 0.0909, 715, 0, 1, 0, 0, 715, 0, 0 ], [ 1, 0, 0.0943, 0.0063, 0, 0....
[ "import unittest", "import random", "import math", "from scipy.special import gammaln, psi, polygamma", "from scipy import weave", "from utils.start_cpp import start_cpp", "gamma_code = start_cpp() + \"\"\"\n#ifndef GAMMA_CODE\n#define GAMMA_CODE\n\n#include <cmath>\n\n// Returns the natural logarithm o...
# -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.5, 0.0333, 0, 0.66, 0, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 1, 0, 0.5333, 0.0333, 0, 0.66, 0.5, 154, 0, 1, 0, 0, 154, 0, 0 ], [ 2, 0, 0.8333, 0.3667, 0, 0.66, ...
[ "import inspect", "import hashlib", "def start_cpp(hash_str = None):\n \"\"\"This method does two things - firstly it adds the correct line numbers to scipy.weave code (Good for debugging) and secondly it can optionaly inserts a hash code of some other code into the code. This latter feature is useful for work...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.2031, 0.0156, 0, 0.66, 0, 509, 0, 1, 0, 0, 509, 0, 0 ], [ 1, 0, 0.2188, 0.0156, 0, 0.66, 0.125, 79, 0, 1, 0, 0, 79, 0, 0 ], [ 1, 0, 0.2344, 0.0156, 0, 0.6...
[ "import sys", "import os.path", "import tempfile", "import shutil", "from distutils.core import setup, Extension", "import distutils.ccompiler", "import distutils.dep_util", "try:\n __default_compiler = distutils.ccompiler.new_compiler()\nexcept:\n __default_compiler = None", " __default_compiler...
# Copyright (c) 2012, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0634, 0.0049, 0, 0.66, 0, 291, 0, 1, 0, 0, 291, 0, 0 ], [ 1, 0, 0.0683, 0.0049, 0, 0.66, 0.5, 878, 0, 1, 0, 0, 878, 0, 0 ], [ 3, 0, 0.5439, 0.9171, 0, 0.6...
[ "import pydoc", "import inspect", "class DocGen:\n \"\"\"A helper class that is used to generate documentation for the system. Outputs multiple formats simultaneously, specifically html for local reading with a webbrowser and the markup used by the wiki system on Google code.\"\"\"\n def __init__(self, name, ...
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright (c) 2010, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyrig...
[ [ 1, 0, 0.3636, 0.0227, 0, 0.66, 0, 182, 0, 1, 0, 0, 182, 0, 0 ], [ 2, 0, 0.5682, 0.25, 0, 0.66, 0.5, 903, 0, 1, 0, 0, 0, 0, 9 ], [ 8, 1, 0.4773, 0.0227, 1, 0.62, ...
[ "from ctypes import *", "def setProcName(name):\n \"\"\"Sets the process name, linux only - useful for those programs where you might want to do a killall, but don't want to slaughter all the other python processes. Note that there are multiple mechanisms, and that the given new name can be shortened by differin...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1456, 0.0097, 0, 0.66, 0, 901, 0, 1, 0, 0, 901, 0, 0 ], [ 1, 0, 0.1553, 0.0097, 0, 0.66, 0.1111, 99, 0, 1, 0, 0, 99, 0, 0 ], [ 1, 0, 0.1748, 0.0097, 0, 0....
[ "import multiprocessing as mp", "import multiprocessing.synchronize # To make sure we have all the functionality.", "import types", "import marshal", "import unittest", "def repeat(x):\n \"\"\"A generator that repeats the input forever - can be used with the mp_map function to give data to a function tha...
# -*- coding: utf-8 -*- # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of...
[ [ 1, 0, 0.1923, 0.0128, 0, 0.66, 0, 972, 0, 1, 0, 0, 972, 0, 0 ], [ 14, 0, 0.6282, 0.7564, 0, 0.66, 1, 799, 4, 0, 0, 0, 0, 0, 1 ] ]
[ "from utils.start_cpp import start_cpp", "numpy_util_code = start_cpp() + \"\"\"\n#ifndef NUMPY_UTIL_CODE\n#define NUMPY_UTIL_CODE\n\nfloat & Float1D(PyArrayObject * arr, int index = 0)\n{\n return *(float*)(arr->data + index*arr->strides[0]);\n}" ]
# Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0718, 0.0055, 0, 0.66, 0, 972, 0, 1, 0, 0, 972, 0, 0 ], [ 14, 0, 0.5497, 0.9061, 0, 0.66, 1, 666, 4, 0, 0, 0, 0, 0, 1 ] ]
[ "from utils.start_cpp import start_cpp", "dir_est_code = start_cpp() + \"\"\"\n// Defined as a class - you then add each multinomial before requesting a maximum likelihood update of the Dirichlet distribution. It uses Newton-Raphson iterations, and so needs a starting point - you provide a vector to be updated, w...
#! /usr/bin/env python # Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of ...
[ [ 1, 0, 0.4688, 0.0312, 0, 0.66, 0, 466, 0, 1, 0, 0, 466, 0, 0 ], [ 1, 0, 0.5312, 0.0312, 0, 0.66, 0.1111, 970, 0, 1, 0, 0, 970, 0, 0 ], [ 14, 0, 0.6875, 0.0312, 0, ...
[ "import dp_utils", "from utils import doc_gen", "doc = doc_gen.DocGen('dp_utils', 'Dirichlet Process Utilities', 'Utility library for handling Dirichlet processes')", "doc.addFile('readme.txt', 'Overview')", "doc.addVariable('sampling_code', 'Code for sampling from various distributions - uniform, Gaussian,...
# Copyright (c) 2011, Tom SF Haines # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo...
[ [ 1, 0, 0.0379, 0.0029, 0, 0.66, 0, 265, 0, 1, 0, 0, 265, 0, 0 ], [ 1, 0, 0.0408, 0.0029, 0, 0.66, 0.1429, 88, 0, 1, 0, 0, 88, 0, 0 ], [ 1, 0, 0.0437, 0.0029, 0, 0....
[ "from scipy import weave", "import unittest", "from utils.start_cpp import start_cpp", "linked_list_code = start_cpp() + \"\"\"\n// Predefinitions...\ntemplate <typename ITEM, typename BODY> class Item;\ntemplate <typename ITEM, typename BODY> class List;\n\n// Useful default...\nstruct Empty {};", "class T...