code string | signature string | docstring string | loss_without_docstring float64 | loss_with_docstring float64 | factor float64 |
|---|---|---|---|---|---|
'''
:param io_hash: input/output hash
:type io_hash: dict
:returns: boolean indicating whether any job-based object references are found in *io_hash*
'''
q = []
for field in io_hash:
if is_job_ref(io_hash[field]):
if get_job_from_jbor(io_hash[field]).startswith('localjob... | def has_local_job_refs(io_hash) | :param io_hash: input/output hash
:type io_hash: dict
:returns: boolean indicating whether any job-based object references are found in *io_hash* | 1.975507 | 1.671222 | 1.182074 |
'''
:param jbor: a dict that is a valid job-based object reference
:type jbor: dict
:param job_outputs: a dict of finished local jobs to their output hashes
:type job_outputs: :class:`collections.OrderedDict`
:returns: the referenced value if present
:raises: :exc:`Exception` if the job-base... | def resolve_job_ref(jbor, job_outputs={}, should_resolve=True) | :param jbor: a dict that is a valid job-based object reference
:type jbor: dict
:param job_outputs: a dict of finished local jobs to their output hashes
:type job_outputs: :class:`collections.OrderedDict`
:returns: the referenced value if present
:raises: :exc:`Exception` if the job-based object ref... | 2.584115 | 1.927429 | 1.340706 |
'''
:param io_hash: an input or output hash in which to resolve any job-based object references possible
:type io_hash: dict
:param job_outputs: a mapping of finished local jobs to their output hashes
:type job_outputs: dict
:param should_resolve: whether it is an error if a job-based object ref... | def resolve_job_references(io_hash, job_outputs, should_resolve=True) | :param io_hash: an input or output hash in which to resolve any job-based object references possible
:type io_hash: dict
:param job_outputs: a mapping of finished local jobs to their output hashes
:type job_outputs: dict
:param should_resolve: whether it is an error if a job-based object reference in *i... | 2.05815 | 1.379631 | 1.491812 |
'''
Add DNAnexus links to non-closed data objects in input_hash to depends_on
'''
q = []
for field in input_hash:
possible_dep = get_nonclosed_data_obj_link(input_hash[field])
if possible_dep is not None:
depends_on.append(possible_dep)
elif isinstance(input_hash... | def get_implicit_depends_on(input_hash, depends_on) | Add DNAnexus links to non-closed data objects in input_hash to depends_on | 1.984021 | 1.621159 | 1.223829 |
'''
:param function: function to run
:param input_hash: input to new job
:param depends_on: list of data object IDs and/or job IDs (local or remote) to wait for before the job can be run
:type depends_on: list of strings
:param name: job name (optional)
:returns: new local job ID
This f... | def queue_entry_point(function, input_hash, depends_on=[], name=None) | :param function: function to run
:param input_hash: input to new job
:param depends_on: list of data object IDs and/or job IDs (local or remote) to wait for before the job can be run
:type depends_on: list of strings
:param name: job name (optional)
:returns: new local job ID
This function shou... | 2.723992 | 1.498494 | 1.81782 |
'''
:param run_spec: run specification from the dxapp.json of the app
:type run_spec: dict
Runs all job entry points found in
$DX_TEST_JOB_HOMEDIRS/job_queue.json in a first-in, first-out
manner until it is an empty array (or an error occurs).
'''
job_queue_path = os.path.join(environ['... | def run_entry_points(run_spec) | :param run_spec: run specification from the dxapp.json of the app
:type run_spec: dict
Runs all job entry points found in
$DX_TEST_JOB_HOMEDIRS/job_queue.json in a first-in, first-out
manner until it is an empty array (or an error occurs). | 3.180666 | 2.297368 | 1.384483 |
return DXHTTPRequest('/%s/addTags' % object_id, input_params, always_retry=always_retry, **kwargs) | def analysis_add_tags(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /analysis-xxxx/addTags API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Workflows-and-Analyses#API-method%3A-%2Fanalysis-xxxx%2FaddTags | 3.14284 | 4.125552 | 0.761799 |
return DXHTTPRequest('/%s/describe' % object_id, input_params, always_retry=always_retry, **kwargs) | def analysis_describe(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /analysis-xxxx/describe API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Workflows-and-Analyses#API-method%3A-%2Fanalysis-xxxx%2Fdescribe | 2.967047 | 4.15875 | 0.713447 |
return DXHTTPRequest('/%s/removeTags' % object_id, input_params, always_retry=always_retry, **kwargs) | def analysis_remove_tags(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /analysis-xxxx/removeTags API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Workflows-and-Analyses#API-method%3A-%2Fanalysis-xxxx%2FremoveTags | 2.980278 | 4.183149 | 0.712448 |
return DXHTTPRequest('/%s/setProperties' % object_id, input_params, always_retry=always_retry, **kwargs) | def analysis_set_properties(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /analysis-xxxx/setProperties API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Workflows-and-Analyses#API-method%3A-%2Fanalysis-xxxx%2FsetProperties | 3.16983 | 4.135058 | 0.766575 |
return DXHTTPRequest('/%s/terminate' % object_id, input_params, always_retry=always_retry, **kwargs) | def analysis_terminate(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /analysis-xxxx/terminate API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Workflows-and-Analyses#API-method%3A-%2Fanalysis-xxxx%2Fterminate | 3.281732 | 4.489377 | 0.730999 |
fully_qualified_version = app_name_or_id + (('/' + alias) if alias else '')
return DXHTTPRequest('/%s/addDevelopers' % fully_qualified_version, input_params, always_retry=always_retry, **kwargs) | def app_add_developers(app_name_or_id, alias=None, input_params={}, always_retry=True, **kwargs) | Invokes the /app-xxxx/addDevelopers API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Apps#API-method:-/app-xxxx%5B/yyyy%5D/addDevelopers | 3.413617 | 3.057102 | 1.116619 |
input_params_cp = Nonce.update_nonce(input_params)
fully_qualified_version = app_name_or_id + (('/' + alias) if alias else '')
return DXHTTPRequest('/%s/run' % fully_qualified_version, input_params_cp, always_retry=always_retry, **kwargs) | def app_run(app_name_or_id, alias=None, input_params={}, always_retry=True, **kwargs) | Invokes the /app-xxxx/run API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Apps#API-method:-/app-xxxx%5B/yyyy%5D/run | 4.326771 | 3.931035 | 1.10067 |
return DXHTTPRequest('/%s/addTags' % object_id, input_params, always_retry=always_retry, **kwargs) | def applet_add_tags(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /applet-xxxx/addTags API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Tags#API-method%3A-%2Fclass-xxxx%2FaddTags | 2.984638 | 4.192372 | 0.711921 |
return DXHTTPRequest('/%s/describe' % object_id, input_params, always_retry=always_retry, **kwargs) | def applet_describe(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /applet-xxxx/describe API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Applets-and-Entry-Points#API-method%3A-%2Fapplet-xxxx%2Fdescribe | 3.215173 | 4.306388 | 0.746605 |
return DXHTTPRequest('/%s/get' % object_id, input_params, always_retry=always_retry, **kwargs) | def applet_get(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /applet-xxxx/get API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Applets-and-Entry-Points#API-method%3A-%2Fapplet-xxxx%2Fget | 3.630578 | 4.811808 | 0.754514 |
return DXHTTPRequest('/%s/getDetails' % object_id, input_params, always_retry=always_retry, **kwargs) | def applet_get_details(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /applet-xxxx/getDetails API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Details-and-Links#API-method%3A-%2Fclass-xxxx%2FgetDetails | 3.450229 | 4.077302 | 0.846204 |
return DXHTTPRequest('/%s/listProjects' % object_id, input_params, always_retry=always_retry, **kwargs) | def applet_list_projects(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /applet-xxxx/listProjects API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Cloning#API-method%3A-%2Fclass-xxxx%2FlistProjects | 3.200286 | 4.535737 | 0.705571 |
return DXHTTPRequest('/%s/removeTags' % object_id, input_params, always_retry=always_retry, **kwargs) | def applet_remove_tags(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /applet-xxxx/removeTags API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Tags#API-method%3A-%2Fclass-xxxx%2FremoveTags | 3.01885 | 4.311851 | 0.700129 |
return DXHTTPRequest('/%s/rename' % object_id, input_params, always_retry=always_retry, **kwargs) | def applet_rename(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /applet-xxxx/rename API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Name#API-method%3A-%2Fclass-xxxx%2Frename | 3.092069 | 4.394717 | 0.703588 |
return DXHTTPRequest('/%s/validateBatch' % object_id, input_params, always_retry=always_retry, **kwargs) | def applet_validate_batch(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /applet-xxxx/validateBatch API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Applets-and-Entry-Points#API-method%3A-%2Fapplet-xxxx%2FvalidateBatch | 3.174211 | 4.280961 | 0.741472 |
input_params_cp = Nonce.update_nonce(input_params)
return DXHTTPRequest('/%s/run' % object_id, input_params_cp, always_retry=always_retry, **kwargs) | def applet_run(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /applet-xxxx/run API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Applets-and-Entry-Points#API-method%3A-%2Fapplet-xxxx%2Frun | 4.591994 | 4.893854 | 0.938319 |
return DXHTTPRequest('/%s/setProperties' % object_id, input_params, always_retry=always_retry, **kwargs) | def applet_set_properties(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /applet-xxxx/setProperties API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Properties#API-method%3A-%2Fclass-xxxx%2FsetProperties | 3.30794 | 4.150758 | 0.796948 |
return DXHTTPRequest('/%s/clone' % object_id, input_params, always_retry=always_retry, **kwargs) | def container_clone(object_id, input_params={}, always_retry=False, **kwargs) | Invokes the /container-xxxx/clone API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Cloning#API-method%3A-%2Fclass-xxxx%2Fclone | 3.310668 | 4.35653 | 0.759932 |
return DXHTTPRequest('/%s/describe' % object_id, input_params, always_retry=always_retry, **kwargs) | def container_describe(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /container-xxxx/describe API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Containers-for-Execution#API-method%3A-%2Fcontainer-xxxx%2Fdescribe | 3.344587 | 3.653718 | 0.915393 |
return DXHTTPRequest('/%s/destroy' % object_id, input_params, always_retry=always_retry, **kwargs) | def container_destroy(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /container-xxxx/destroy API method. | 3.69276 | 3.803804 | 0.970807 |
return DXHTTPRequest('/%s/listFolder' % object_id, input_params, always_retry=always_retry, **kwargs) | def container_list_folder(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /container-xxxx/listFolder API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Folders-and-Deletion#API-method%3A-%2Fclass-xxxx%2FlistFolder | 3.335041 | 3.769886 | 0.884653 |
return DXHTTPRequest('/%s/move' % object_id, input_params, always_retry=always_retry, **kwargs) | def container_move(object_id, input_params={}, always_retry=False, **kwargs) | Invokes the /container-xxxx/move API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Folders-and-Deletion#API-method%3A-%2Fclass-xxxx%2Fmove | 3.268435 | 4.46801 | 0.731519 |
return DXHTTPRequest('/%s/newFolder' % object_id, input_params, always_retry=always_retry, **kwargs) | def container_new_folder(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /container-xxxx/newFolder API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Folders-and-Deletion#API-method%3A-%2Fclass-xxxx%2FnewFolder | 3.041144 | 3.78291 | 0.803917 |
return DXHTTPRequest('/%s/removeFolder' % object_id, input_params, always_retry=always_retry, **kwargs) | def container_remove_folder(object_id, input_params={}, always_retry=False, **kwargs) | Invokes the /container-xxxx/removeFolder API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Folders-and-Deletion#API-method%3A-%2Fclass-xxxx%2FremoveFolder | 3.355551 | 3.985839 | 0.841868 |
return DXHTTPRequest('/%s/removeObjects' % object_id, input_params, always_retry=always_retry, **kwargs) | def container_remove_objects(object_id, input_params={}, always_retry=False, **kwargs) | Invokes the /container-xxxx/removeObjects API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Folders-and-Deletion#API-method%3A-%2Fclass-xxxx%2FremoveObjects | 3.528648 | 4.108264 | 0.858915 |
return DXHTTPRequest('/%s/renameFolder' % object_id, input_params, always_retry=always_retry, **kwargs) | def container_rename_folder(object_id, input_params={}, always_retry=False, **kwargs) | Invokes the /container-xxxx/renameFolder API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Folders-and-Deletion#API-method%3A-%2Fclass-xxxx%2FrenameFolder | 3.185946 | 3.801294 | 0.838121 |
return DXHTTPRequest('/%s/addTags' % object_id, input_params, always_retry=always_retry, **kwargs) | def database_add_tags(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /database-xxxx/addTags API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Tags#API-method%3A-%2Fclass-xxxx%2FaddTags | 3.269634 | 4.069957 | 0.803359 |
return DXHTTPRequest('/%s/addTypes' % object_id, input_params, always_retry=always_retry, **kwargs) | def database_add_types(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /database-xxxx/addTypes API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Types#API-method%3A-%2Fclass-xxxx%2FaddTypes | 3.211276 | 4.068084 | 0.789383 |
return DXHTTPRequest('/%s/close' % object_id, input_params, always_retry=always_retry, **kwargs) | def database_close(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /database-xxxx/close API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Data-Object-Lifecycle#API-method%3A-%2Fclass-xxxx%2Fclose | 3.484178 | 4.474493 | 0.778675 |
return DXHTTPRequest('/%s/describe' % object_id, input_params, always_retry=always_retry, **kwargs) | def database_describe(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /database-xxxx/describe API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Databases#API-method%3A-%2Fdatabase-xxxx%2Fdescribe | 3.168818 | 3.81315 | 0.831024 |
return DXHTTPRequest('/%s/getDetails' % object_id, input_params, always_retry=always_retry, **kwargs) | def database_get_details(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /database-xxxx/getDetails API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Details-and-Links#API-method%3A-%2Fclass-xxxx%2FgetDetails | 3.524804 | 3.771063 | 0.934698 |
return DXHTTPRequest('/%s/listProjects' % object_id, input_params, always_retry=always_retry, **kwargs) | def database_list_projects(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /database-xxxx/listProjects API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Cloning#API-method%3A-%2Fclass-xxxx%2FlistProjects | 3.581657 | 4.060586 | 0.882054 |
return DXHTTPRequest('/%s/relocate' % object_id, input_params, always_retry=always_retry, **kwargs) | def database_relocate(object_id, input_params={}, always_retry=False, **kwargs) | Invokes the /database-xxxx/relocate API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Databases#API-method%3A-%2Fdatabase-xxxx%2Frelocate | 2.969615 | 4.460603 | 0.665743 |
return DXHTTPRequest('/%s/removeTags' % object_id, input_params, always_retry=always_retry, **kwargs) | def database_remove_tags(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /database-xxxx/removeTags API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Tags#API-method%3A-%2Fclass-xxxx%2FremoveTags | 3.225394 | 4.160534 | 0.775236 |
return DXHTTPRequest('/%s/removeTypes' % object_id, input_params, always_retry=always_retry, **kwargs) | def database_remove_types(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /database-xxxx/removeTypes API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Types#API-method%3A-%2Fclass-xxxx%2FremoveTypes | 3.159642 | 4.175407 | 0.756727 |
return DXHTTPRequest('/%s/rename' % object_id, input_params, always_retry=always_retry, **kwargs) | def database_rename(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /database-xxxx/rename API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Name#API-method%3A-%2Fclass-xxxx%2Frename | 3.04348 | 4.180206 | 0.728069 |
return DXHTTPRequest('/%s/setDetails' % object_id, input_params, always_retry=always_retry, **kwargs) | def database_set_details(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /database-xxxx/setDetails API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Details-and-Links#API-method%3A-%2Fclass-xxxx%2FsetDetails | 3.308301 | 3.714597 | 0.890622 |
return DXHTTPRequest('/%s/setProperties' % object_id, input_params, always_retry=always_retry, **kwargs) | def database_set_properties(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /database-xxxx/setProperties API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Properties#API-method%3A-%2Fclass-xxxx%2FsetProperties | 3.098957 | 4.047271 | 0.76569 |
return DXHTTPRequest('/%s/setVisibility' % object_id, input_params, always_retry=always_retry, **kwargs) | def database_set_visibility(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /database-xxxx/setVisibility API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Visibility#API-method%3A-%2Fclass-xxxx%2FsetVisibility | 3.691194 | 4.535246 | 0.81389 |
return DXHTTPRequest('/%s/listFolder' % object_id, input_params, always_retry=always_retry, **kwargs) | def database_list_folder(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /database-xxxx/listFolder API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Databases#API-method%3A-%2Fdatabase-xxxx%2FlistFolder | 3.221075 | 4.143431 | 0.777393 |
return DXHTTPRequest('/%s/addTags' % object_id, input_params, always_retry=always_retry, **kwargs) | def file_add_tags(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /file-xxxx/addTags API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Tags#API-method%3A-%2Fclass-xxxx%2FaddTags | 3.044493 | 4.112353 | 0.740329 |
return DXHTTPRequest('/%s/addTypes' % object_id, input_params, always_retry=always_retry, **kwargs) | def file_add_types(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /file-xxxx/addTypes API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Types#API-method%3A-%2Fclass-xxxx%2FaddTypes | 3.040283 | 4.210966 | 0.721992 |
return DXHTTPRequest('/%s/close' % object_id, input_params, always_retry=always_retry, **kwargs) | def file_close(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /file-xxxx/close API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Files#API-method%3A-%2Ffile-xxxx%2Fclose | 3.299866 | 5.20686 | 0.633754 |
return DXHTTPRequest('/%s/describe' % object_id, input_params, always_retry=always_retry, **kwargs) | def file_describe(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /file-xxxx/describe API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Files#API-method%3A-%2Ffile-xxxx%2Fdescribe | 3.082967 | 4.066606 | 0.758118 |
return DXHTTPRequest('/%s/download' % object_id, input_params, always_retry=always_retry, **kwargs) | def file_download(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /file-xxxx/download API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Files#API-method%3A-%2Ffile-xxxx%2Fdownload | 3.136309 | 4.441054 | 0.706208 |
return DXHTTPRequest('/%s/getDetails' % object_id, input_params, always_retry=always_retry, **kwargs) | def file_get_details(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /file-xxxx/getDetails API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Details-and-Links#API-method%3A-%2Fclass-xxxx%2FgetDetails | 3.409116 | 3.785973 | 0.900459 |
return DXHTTPRequest('/%s/listProjects' % object_id, input_params, always_retry=always_retry, **kwargs) | def file_list_projects(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /file-xxxx/listProjects API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Cloning#API-method%3A-%2Fclass-xxxx%2FlistProjects | 3.399733 | 4.161677 | 0.816914 |
return DXHTTPRequest('/%s/removeTags' % object_id, input_params, always_retry=always_retry, **kwargs) | def file_remove_tags(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /file-xxxx/removeTags API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Tags#API-method%3A-%2Fclass-xxxx%2FremoveTags | 3.075846 | 4.147605 | 0.741596 |
return DXHTTPRequest('/%s/removeTypes' % object_id, input_params, always_retry=always_retry, **kwargs) | def file_remove_types(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /file-xxxx/removeTypes API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Types#API-method%3A-%2Fclass-xxxx%2FremoveTypes | 3.102298 | 4.188947 | 0.740591 |
return DXHTTPRequest('/%s/rename' % object_id, input_params, always_retry=always_retry, **kwargs) | def file_rename(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /file-xxxx/rename API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Name#API-method%3A-%2Fclass-xxxx%2Frename | 3.033606 | 4.24234 | 0.715078 |
return DXHTTPRequest('/%s/setDetails' % object_id, input_params, always_retry=always_retry, **kwargs) | def file_set_details(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /file-xxxx/setDetails API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Details-and-Links#API-method%3A-%2Fclass-xxxx%2FsetDetails | 3.2459 | 3.702361 | 0.876711 |
return DXHTTPRequest('/%s/setProperties' % object_id, input_params, always_retry=always_retry, **kwargs) | def file_set_properties(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /file-xxxx/setProperties API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Properties#API-method%3A-%2Fclass-xxxx%2FsetProperties | 3.075709 | 4.050736 | 0.759296 |
return DXHTTPRequest('/%s/setVisibility' % object_id, input_params, always_retry=always_retry, **kwargs) | def file_set_visibility(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /file-xxxx/setVisibility API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Visibility#API-method%3A-%2Fclass-xxxx%2FsetVisibility | 3.652662 | 4.51878 | 0.808329 |
return DXHTTPRequest('/%s/upload' % object_id, input_params, always_retry=always_retry, **kwargs) | def file_upload(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /file-xxxx/upload API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Files#API-method%3A-%2Ffile-xxxx%2Fupload | 3.111729 | 4.53067 | 0.686814 |
input_params_cp = Nonce.update_nonce(input_params)
return DXHTTPRequest('/file/new', input_params_cp, always_retry=always_retry, **kwargs) | def file_new(input_params={}, always_retry=True, **kwargs) | Invokes the /file/new API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Files#API-method%3A-%2Ffile%2Fnew | 4.954207 | 5.313866 | 0.932317 |
fully_qualified_version = name_or_id + (('/' + alias) if alias else '')
return DXHTTPRequest('/%s/addAuthorizedUsers' % fully_qualified_version, input_params, always_retry=always_retry, **kwargs) | def global_workflow_add_authorized_users(name_or_id, alias=None, input_params={}, always_retry=True, **kwargs) | Invokes the /globalworkflow-xxxx/addAuthorizedUsers API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Global-Workflows#API-method:-/globalworkflow-xxxx%5B/yyyy%5D/addAuthorizedUsers | 3.698326 | 3.242014 | 1.14075 |
input_params_cp = Nonce.update_nonce(input_params)
fully_qualified_version = name_or_id + (('/' + alias) if alias else '')
return DXHTTPRequest('/%s/run' % fully_qualified_version, input_params_cp, always_retry=always_retry, **kwargs) | def global_workflow_run(name_or_id, alias=None, input_params={}, always_retry=True, **kwargs) | Invokes the /globalworkflow-xxxx/run API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Global-Workflows#API-method:-/globalworkflow-xxxx%5B/yyyy%5D/run | 4.818208 | 4.45127 | 1.082434 |
return DXHTTPRequest('/%s/addTags' % object_id, input_params, always_retry=always_retry, **kwargs) | def job_add_tags(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /job-xxxx/addTags API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Applets-and-Entry-Points#API-method%3A-%2Fjob-xxxx%2FaddTags | 3.208671 | 3.713847 | 0.863975 |
return DXHTTPRequest('/%s/describe' % object_id, input_params, always_retry=always_retry, **kwargs) | def job_describe(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /job-xxxx/describe API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Applets-and-Entry-Points#API-method%3A-%2Fjob-xxxx%2Fdescribe | 3.191477 | 3.671287 | 0.869308 |
return DXHTTPRequest('/%s/getLog' % object_id, input_params, always_retry=always_retry, **kwargs) | def job_get_log(object_id, input_params={}, always_retry=False, **kwargs) | Invokes the /job-xxxx/getLog API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Applets-and-Entry-Points#API-method%3A-%2Fjob-xxxx%2FgetLog | 4.070927 | 4.498385 | 0.904975 |
return DXHTTPRequest('/%s/removeTags' % object_id, input_params, always_retry=always_retry, **kwargs) | def job_remove_tags(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /job-xxxx/removeTags API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Applets-and-Entry-Points#API-method%3A-%2Fjob-xxxx%2FremoveTags | 3.097392 | 3.825626 | 0.809643 |
return DXHTTPRequest('/%s/setProperties' % object_id, input_params, always_retry=always_retry, **kwargs) | def job_set_properties(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /job-xxxx/setProperties API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Applets-and-Entry-Points#API-method%3A-%2Fjob-xxxx%2FsetProperties | 3.20243 | 3.739781 | 0.856315 |
return DXHTTPRequest('/%s/terminate' % object_id, input_params, always_retry=always_retry, **kwargs) | def job_terminate(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /job-xxxx/terminate API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Applets-and-Entry-Points#API-method%3A-%2Fjob-xxxx%2Fterminate | 3.23529 | 4.057127 | 0.797434 |
return DXHTTPRequest('/notifications/get', input_params, always_retry=always_retry, **kwargs) | def notifications_get(input_params={}, always_retry=True, **kwargs) | Invokes the /notifications/get API method. | 4.409661 | 4.282127 | 1.029783 |
return DXHTTPRequest('/notifications/markRead', input_params, always_retry=always_retry, **kwargs) | def notifications_mark_read(input_params={}, always_retry=True, **kwargs) | Invokes the /notifications/markRead API method. | 3.8303 | 4.119675 | 0.929758 |
return DXHTTPRequest('/%s/describe' % object_id, input_params, always_retry=always_retry, **kwargs) | def org_describe(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /org-xxxx/describe API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Organizations#API-method%3A-%2Forg-xxxx%2Fdescribe | 3.057841 | 3.873212 | 0.789484 |
return DXHTTPRequest('/%s/findMembers' % object_id, input_params, always_retry=always_retry, **kwargs) | def org_find_members(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /org-xxxx/findMembers API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Organizations#API-method%3A-%2Forg-xxxx%2FfindMembers | 3.107367 | 4.159827 | 0.746994 |
return DXHTTPRequest('/%s/findProjects' % object_id, input_params, always_retry=always_retry, **kwargs) | def org_find_projects(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /org-xxxx/findProjects API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Organizations#API-method%3A-%2Forg-xxxx%2FfindProjects | 3.162944 | 4.152599 | 0.761678 |
return DXHTTPRequest('/%s/findApps' % object_id, input_params, always_retry=always_retry, **kwargs) | def org_find_apps(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /org-xxxx/findApps API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Organizations#API-method%3A-%2Forg-xxxx%2FfindApps | 3.156953 | 4.140474 | 0.762462 |
return DXHTTPRequest('/%s/invite' % object_id, input_params, always_retry=always_retry, **kwargs) | def org_invite(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /org-xxxx/invite API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Organizations#API-method%3A-%2Forg-xxxx%2Finvite | 3.190706 | 4.491588 | 0.710374 |
return DXHTTPRequest('/%s/removeMember' % object_id, input_params, always_retry=always_retry, **kwargs) | def org_remove_member(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /org-xxxx/removeMember API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Organizations#API-method%3A-%2Forg-xxxx%2FremoveMember | 3.196909 | 4.21377 | 0.758681 |
return DXHTTPRequest('/%s/setMemberAccess' % object_id, input_params, always_retry=always_retry, **kwargs) | def org_set_member_access(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /org-xxxx/setMemberAccess API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Organizations#API-method%3A-%2Forg-xxxx%2FsetMemberAccess | 2.887326 | 3.868248 | 0.746417 |
return DXHTTPRequest('/%s/update' % object_id, input_params, always_retry=always_retry, **kwargs) | def org_update(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /org-xxxx/update API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Organizations#API-method%3A-%2Forg-xxxx%2Fupdate | 3.451237 | 4.143747 | 0.832878 |
return DXHTTPRequest('/%s/addTags' % object_id, input_params, always_retry=always_retry, **kwargs) | def project_add_tags(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /project-xxxx/addTags API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Projects#API-method%3A-%2Fproject-xxxx%2FaddTags | 3.153618 | 4.084911 | 0.772016 |
return DXHTTPRequest('/%s/clone' % object_id, input_params, always_retry=always_retry, **kwargs) | def project_clone(object_id, input_params={}, always_retry=False, **kwargs) | Invokes the /project-xxxx/clone API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Cloning#API-method%3A-%2Fclass-xxxx%2Fclone | 3.27267 | 4.496281 | 0.727861 |
return DXHTTPRequest('/%s/decreasePermissions' % object_id, input_params, always_retry=always_retry, **kwargs) | def project_decrease_permissions(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /project-xxxx/decreasePermissions API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Project-Permissions-and-Sharing#API-method%3A-%2Fproject-xxxx%2FdecreasePermissions | 3.402963 | 3.798074 | 0.895971 |
return DXHTTPRequest('/%s/describe' % object_id, input_params, always_retry=always_retry, **kwargs) | def project_describe(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /project-xxxx/describe API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Projects#API-method%3A-%2Fproject-xxxx%2Fdescribe | 3.174319 | 3.721478 | 0.852973 |
return DXHTTPRequest('/%s/destroy' % object_id, input_params, always_retry=always_retry, **kwargs) | def project_destroy(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /project-xxxx/destroy API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Projects#API-method%3A-%2Fproject-xxxx%2Fdestroy | 3.504956 | 4.37737 | 0.800699 |
return DXHTTPRequest('/%s/invite' % object_id, input_params, always_retry=always_retry, **kwargs) | def project_invite(object_id, input_params={}, always_retry=False, **kwargs) | Invokes the /project-xxxx/invite API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Project-Permissions-and-Sharing#API-method%3A-%2Fproject-xxxx%2Finvite | 3.414753 | 4.560501 | 0.748767 |
return DXHTTPRequest('/%s/leave' % object_id, input_params, always_retry=always_retry, **kwargs) | def project_leave(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /project-xxxx/leave API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Project-Permissions-and-Sharing#API-method%3A-%2Fproject-xxxx%2Fleave | 3.517898 | 4.376299 | 0.803852 |
return DXHTTPRequest('/%s/listFolder' % object_id, input_params, always_retry=always_retry, **kwargs) | def project_list_folder(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /project-xxxx/listFolder API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Folders-and-Deletion#API-method%3A-%2Fclass-xxxx%2FlistFolder | 3.29231 | 3.723127 | 0.884286 |
return DXHTTPRequest('/%s/move' % object_id, input_params, always_retry=always_retry, **kwargs) | def project_move(object_id, input_params={}, always_retry=False, **kwargs) | Invokes the /project-xxxx/move API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Folders-and-Deletion#API-method%3A-%2Fclass-xxxx%2Fmove | 3.176818 | 4.478233 | 0.709391 |
return DXHTTPRequest('/%s/newFolder' % object_id, input_params, always_retry=always_retry, **kwargs) | def project_new_folder(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /project-xxxx/newFolder API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Folders-and-Deletion#API-method%3A-%2Fclass-xxxx%2FnewFolder | 3.101217 | 3.833353 | 0.809009 |
return DXHTTPRequest('/%s/removeFolder' % object_id, input_params, always_retry=always_retry, **kwargs) | def project_remove_folder(object_id, input_params={}, always_retry=False, **kwargs) | Invokes the /project-xxxx/removeFolder API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Folders-and-Deletion#API-method%3A-%2Fclass-xxxx%2FremoveFolder | 3.272233 | 4.046139 | 0.80873 |
return DXHTTPRequest('/%s/removeObjects' % object_id, input_params, always_retry=always_retry, **kwargs) | def project_remove_objects(object_id, input_params={}, always_retry=False, **kwargs) | Invokes the /project-xxxx/removeObjects API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Folders-and-Deletion#API-method%3A-%2Fclass-xxxx%2FremoveObjects | 3.40858 | 4.1944 | 0.81265 |
return DXHTTPRequest('/%s/removeTags' % object_id, input_params, always_retry=always_retry, **kwargs) | def project_remove_tags(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /project-xxxx/removeTags API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Projects#API-method%3A-%2Fproject-xxxx%2FremoveTags | 3.127273 | 4.144929 | 0.754482 |
return DXHTTPRequest('/%s/renameFolder' % object_id, input_params, always_retry=always_retry, **kwargs) | def project_rename_folder(object_id, input_params={}, always_retry=False, **kwargs) | Invokes the /project-xxxx/renameFolder API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Folders-and-Deletion#API-method%3A-%2Fclass-xxxx%2FrenameFolder | 3.207936 | 3.858276 | 0.831443 |
return DXHTTPRequest('/%s/setProperties' % object_id, input_params, always_retry=always_retry, **kwargs) | def project_set_properties(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /project-xxxx/setProperties API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Projects#API-method%3A-%2Fproject-xxxx%2FsetProperties | 3.06761 | 3.97476 | 0.771772 |
return DXHTTPRequest('/%s/transfer' % object_id, input_params, always_retry=always_retry, **kwargs) | def project_transfer(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /project-xxxx/transfer API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Project-Permissions-and-Sharing#API-method%3A-%2Fproject-xxxx%2Ftransfer | 3.330349 | 4.153471 | 0.801823 |
return DXHTTPRequest('/%s/update' % object_id, input_params, always_retry=always_retry, **kwargs) | def project_update(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /project-xxxx/update API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Projects#API-method%3A-%2Fproject-xxxx%2Fupdate | 3.556152 | 4.156462 | 0.855572 |
return DXHTTPRequest('/%s/updateSponsorship' % object_id, input_params, always_retry=always_retry, **kwargs) | def project_update_sponsorship(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /project-xxxx/updateSponsorship API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Projects#API-method%3A-%2Fproject-xxxx%2FupdateSponsorship | 3.418652 | 4.22373 | 0.809392 |
return DXHTTPRequest('/project/new', input_params, always_retry=always_retry, **kwargs) | def project_new(input_params={}, always_retry=False, **kwargs) | Invokes the /project/new API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Projects#API-method%3A-%2Fproject%2Fnew | 4.058649 | 6.256192 | 0.648741 |
return DXHTTPRequest('/%s/addTags' % object_id, input_params, always_retry=always_retry, **kwargs) | def record_add_tags(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /record-xxxx/addTags API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Tags#API-method%3A-%2Fclass-xxxx%2FaddTags | 3.04134 | 3.663949 | 0.830072 |
return DXHTTPRequest('/%s/addTypes' % object_id, input_params, always_retry=always_retry, **kwargs) | def record_add_types(object_id, input_params={}, always_retry=True, **kwargs) | Invokes the /record-xxxx/addTypes API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Types#API-method%3A-%2Fclass-xxxx%2FaddTypes | 3.037975 | 3.643012 | 0.833919 |
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