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def test_abstract_guessing(): """Test abstract guessing property.""" class _CustomPsychometric(DiscriminationMethod): def psychometric_function(self, d): return 0.5 with pytest.raises(TypeError, match="abstract method"): _CustomPsychometric()
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def remove_repeats(msg): """ This function removes repeated characters from text. :param/return msg: String """ # twitter specific repeats msg = re.sub(r"(.)\1{2,}", r"\1\1\1", msg) # characters repeated 3 or more times # laughs msg = re.sub(r"(ja|Ja)(ja|Ja)+(j)?", r"jaja", msg) # span...
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def _legend_main_get(project, row): """ forma la leyenda de la serie principal del gráfico input project: es el tag project del proyecto seleccionado en fichero XYplus_parameters.f_xml -en XYplus_main.py- row: es fila activa devuelta por select_master) de donde se ...
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def prop_elliptical_obscuration(wf, xradius, yradius, xc = 0.0, yc = 0.0, **kwargs): """Multiply the wavefront by an elliptical obscuration. Parameters ---------- wf : obj WaveFront class object xradius : float X ellipse radius in meters, unless norm is specified ...
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def gen_queen_moves_quiet(queen_bitboard, opponents_pieces, blockers): """ generate capturing queen moves Args: queen_bitboard (int): Bitboard of positions of queens all_pieces (int): Bitboard of all other pieces on the board Returns: generator for all capturing queen moves giv...
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def contrast_jwst_num(coro_floor, norm, matrix_dir, rms=50*u.nm): """ Compute the contrast for a random segmented OTE misalignment on the JWST simulator. :param coro_floor: float, coronagraph contrast floor :param norm: float, normalization factor for PSFs: peak of unaberrated direct PSF :param mat...
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def ordinal_mapper(fh, coords, idmap, fmt=None, n=1000000, th=0.8, prefix=False): """Read an alignment file and match reads and genes in an ordinal system. Parameters ---------- fh : file handle Alignment file to parse. coords : dict of list Gene coordinates table...
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def modify_tilt(path, bin_factor, exclude_angles=[]): """ Modifies the bin-factor and exclude-angles of a given tilt.com file. Note: This will overwrite the file! Parameters ---------- path : str Path to the tilt.com file. bin_factor : int The new bin-factor. exclude_an...
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def file_lines(filename): """ >>> file_lines('test/foo.txt') ['foo', 'bar'] """ return text_file(filename).split()
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def repr_should_be_defined(obj): """Checks the obj.__repr__() method is properly defined""" obj_repr = repr(obj) assert isinstance(obj_repr, str) assert obj_repr == obj.__repr__() assert obj_repr.startswith("<") assert obj_repr.endswith(">") return obj_repr
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def read_tiff(tiff_path): """ Args: tiff_path: a tiff file path Returns: tiff image object """ if not os.path.isfile(tiff_path) or not is_tiff_file(tiff_path): raise InvalidTiffFileError(tiff_path) return imread(tiff_path)
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def changePassword(): """ Change to a new password and email user. URL Path: URL Args (required): - JSON structure of change password data Returns: 200 OK if invocation OK. 500 if server not configured. """ @testcase def changePasswordWorker(): try: ...
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def parallel_for( loop_callback: Callable[[Any], Any], parameters: List[Tuple[Any, ...]], nb_threads: int = os.cpu_count()+4 ) -> List[Any]: """Execute a for loop body in parallel .. note:: Race-Conditions Code executation in parallel can cause into an "race-condition" ...
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def indexName(): """Index start page.""" return render_template('index.html')
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def on_vlc_closed(to_watch_folder, watched_folder, ml_xspf, trigger): """ Checks if modified event trigger was ml.xspf. If yes then finds movie in to_watch_folder that returns true from is_movie_watched(), and calls ask_and_move with the movie folder as source and the watched folder as destination. ...
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def translate_http_code(): """Print given code :return: """ return make_http_code_translation(app)
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def _def_tconst(pattern, _): """Temporal constraints for the energy interval abstraction pattern""" deflection = pattern.hypothesis pattern.last_tnet.add_constraint(deflection.start, deflection.end, DEF_DUR)
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def delete_directory(a_dir): """ Delete a directory tree recursively """ shutil.rmtree(a_dir, onerror=on_remove_error)
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def test_colossus_vmax_consistency_z1(): """ """ try: from colossus.cosmology import cosmology from colossus.halo.profile_nfw import NFWProfile as ColossusNFW except ImportError: return _cosmo = cosmology.setCosmology('planck15') masses_to_check = 10**np.array((11., 12, ...
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def interactive(python): """ Main entrypoint into dbmp interactive mode """ args = '' if not os.path.exists(HISTORY): io.open(HISTORY, 'w+').close() try: while True: pt.shortcuts.clear() pt.shortcuts.set_title("Datera Bare-Metal Provisioner") print("We...
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def dose_rate(sum_shielding, isotope, disable_buildup = False): """ Calculate the dose rate for a specified isotope behind shielding behind shielding barriers. The dose_rate is calculated for 1MBq Args: sum_shielding: dict with shielding elements isotope: isotope name (st...
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def parmap(f, X, nprocs=1): """ parmap_fun() and parmap() are adapted from klaus se's post on stackoverflow. https://stackoverflow.com/a/16071616/4638182 parmap allows map on lambda and class static functions. Fall back to serial map when nprocs=1. """ if nprocs < 1: raise ValueErr...
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def is_char_token(c: str) -> bool: """Return true for single character tokens.""" return c in ["+", "-", "*", "/", "(", ")"]
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def pre_commit(session_: Session) -> None: """Lint using pre-commit.""" args = session_.posargs or ["run", "--all-files", "--show-diff-on-failure"] _export_requirements(session_) poetry_install(session_) session_.install("pre-commit") session_.run("pre-commit", *args) if args and args[0] == ...
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def _float_arr_to_int_arr(float_arr): """Try to cast array to int64. Return original array if data is not representable.""" int_arr = float_arr.astype(numpy.int64) if numpy.any(int_arr != float_arr): # we either have a float that is too large or NaN return float_arr else: return ...
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def test_bernese_koordinat_kovarians(): """Test at den samlede løsnings kovariansmatrix læses korrekt.""" BUDP = BerneseSolution(ADDNEQ2096, CRD2096, COV2096)["BUDP"] skalering = 0.001 ** 2 assert BUDP.kovarians.xx == 0.9145031116e-01 * skalering assert BUDP.kovarians.yx == 0.1754111808e-01 * skale...
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def latest(scores: Scores) -> int: """The last added score.""" return scores[-1]
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def get_dp_2m(wrfin, timeidx=0, method="cat", squeeze=True, cache=None, meta=True, _key=None, units="degC"): """Return the 2m dewpoint temperature. This functions extracts the necessary variables from the NetCDF file object in order to perform the calculation. Args: ...
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def fit_uncertainty(points, lower_wave, upper_wave, log_center_wave, filter_size): """Performs fitting many times to get an estimate of the uncertainty """ mock_points = [] for i in range(1, 100): # First, fit the points coeff = np.polyfit(np.log10(points['rest_wavelength']), ...
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def from_dateutil_rruleset(rruleset): """ Convert a `dateutil.rrule.rruleset` instance to a `Recurrence` instance. :Returns: A `Recurrence` instance. """ rrules = [from_dateutil_rrule(rrule) for rrule in rruleset._rrule] exrules = [from_dateutil_rrule(exrule) for exrule in rruleset....
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def error_038_italic_tag(text): """Fix the error and return (new_text, replacements_count) tuple.""" backup = text (text, count) = re.subn(r"<(i|em)>([^\n<>]+)</\1>", "''\\2''", text, flags=re.I) if re.search(r"</?(?:i|em)>", text, flags=re.I): return (backup, 0) else: return ...
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def create_user(): """ Method that will create an user . Returns: user.id: The id of the created user Raises: If an error occurs it will be displayed in a error message. """ try: new_user = User(name=login_session['username'], email=login_session[ 'emai...
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def store_relation( self, relation_name, persist_type, relation_persist_type, validate = False, force_persist = False, raise_exception = False, store_relations = True, entity_manager = None ): """ Stores a relation with the given name in the entity using the ...
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def buildStartAndEndWigData(thisbam, LOG_EVERY_N=1000, logger=None): """parses a bam file for 3' and 5' ends and builds these into wig-track data Returns a dictionary of various gathered statistics.""" def formatToWig(wigdata): """ take in the read position data and output in...
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def time_series_h5(timefile: Path, colnames: List[str]) -> Optional[DataFrame]: """Read temporal series HDF5 file. If :data:`colnames` is too long, it will be truncated. If it is too short, additional column names will be deduced from the content of the file. Args: timefile: path of the TimeSe...
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def decode_jwt(token): """decodes a token and returns ID associated (subject) if valid""" try: payload = jwt.decode(token.encode(), current_app.config['SECRET_KEY'], algorithms=['HS256']) return {"isError": False, "payload": payload["sub"]} except jwt.ExpiredSignatureError as e: curr...
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def _validate_image_info(ext, image_info=None, **kwargs): """Validates the image_info dictionary has all required information. :param ext: Object 'self'. Unused by this function directly, but left for compatibility with async_command validation. :param image_info: Image information dictiona...
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def show(nodes, print_groups): """Show generic information on node(s).""" from aiida.cmdline.utils.common import get_node_info for node in nodes: # pylint: disable=fixme #TODO: Add a check here on the node type, otherwise it might try to access # attributes such as code which are no...
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def format_point(point: Point) -> str: """Return a str representing a Point object. Args: point: Point obj to represent. Returns: A string representing the Point with ° for grades, ' for minutes and " for seconds. Latitude is written before Longitude. Example Output: 30...
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def handle_get_authentication_groups_db(self, handle, connection, match, data, hdr): """ GET /authentication/groups_db Get user database on this runtime Response status code: OK or INTERNAL_ERROR Response: { "policies": { <policy-id>: policy in JSON format, ... ...
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def families_horizontal_correctors(): """.""" return ['CH']
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def test_viewmodel(): """Get a data manager instance for each test function.""" # Create the device under test (dut) and connect to the database. dut = RAMSTKHardwareBoMView() yield dut # Unsubscribe from pypubsub topics. pub.unsubscribe(dut.on_insert, "succeed_insert_hardware") pub.unsubs...
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def variable_select_source_data_proxy(request): """ @summary: 获取下拉框源数据的通用接口 @param request: @return: """ url = request.GET.get('url') try: response = requests.get( url=url, verify=False ) except Exception as e: logger.exception('variable se...
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def test_directed_valid_paths(): """ antco.ntools.getValidPaths() (directed) testing unit """ # Initial position (0) -> Valid paths: (1) adj_matrix = np.array([ [0, 1, 0, 0, 0, 0], [0, 0, 1, 0, 0, 1], [0, 0, 0, 0, 0, 0], [1, 0, 1, 0, 0, 0], [1, 0, 0, 1, 0, 0], ...
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async def select_guild_lfg_events(guild_id: int) -> list[asyncpg.Record]: """Gets the lfg messages for a specific guild ordered by the youngest creation date""" select_sql = f""" SELECT id, message_id, creation_time, voice_channel_id FROM lfgmessages WHERE ...
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def ValueToString(descriptor, field_desc, value): """Renders a field value as a PHP literal. Args: descriptor: The descriptor module from the protobuf package, e.g. google.protobuf.descriptor. field_desc: The type descriptor for the field value to be rendered. value: The value of the field to b...
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def get_checkpoints(run_dir, from_global_step=None, last_only=False): """Return all available checkpoints. Args: run_dir: Directory where the checkpoints are located. from_global_step (int): Only return checkpoints after this global step. The comparison is *strict*. If ``None``, ret...
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def ssget_p() -> selection_result: """ 选择上一个选择集 """
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def write_env_file(env_dict): """ Write the env_file information to a temporary file If there is any error, return None; otherwise return the temp file """ try: temp_file = tempfile.NamedTemporaryFile(mode='w') for key in env_dict.keys(): val = env_dict[key] ...
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def __load_txt_resource__(path): """ Loads a txt file template :param path: :return: """ txt_file = open(path, "r") return txt_file
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def parse_cpu_spec(spec): """Parse a CPU set specification. :param spec: cpu set string eg "1-4,^3,6" Each element in the list is either a single CPU number, a range of CPU numbers, or a caret followed by a CPU number to be excluded from a previous range. :returns: a set of CPU indexes ...
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def _IterStringLiterals(path, addresses, obj_sections): """Yields all string literals (including \0) for the given object path. Args: path: Object file path. addresses: List of string offsets encoded as hex strings. obj_sections: List of contents of .rodata.str sections read from the given obje...
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def distance_fit_from_transits() -> typing.List[float]: """ This uses the observers position from full transits and then the runway positions from all the transit lines fitted to a """ ((x_mean, x_std), (y_mean, y_std)) = observer_position_mean_std_from_full_transits() transits = transit_x_axis_...
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def collate_fn_synthesize(batch): """ Create batch Args : batch(tuple) : List of tuples / (x, c) x : list of (T,) c : list of (T, D) Returns : Tuple of batch / Network inputs x (B, C, T), Network targets (B, T, 1) """ local_conditioning = len(batch[0]) >= 2 if local_conditioning: ...
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def max_(context, mapping, args, **kwargs): """Return the max of an iterable""" if len(args) != 1: # i18n: "max" is a keyword raise error.ParseError(_("max expects one argument")) iterable = evalwrapped(context, mapping, args[0]) try: return iterable.getmax(context, mapping) ...
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def dict_to_duration(time_dict: Optional[Dict[str, int]]) -> Duration: """Convert a QoS duration profile from YAML into an rclpy Duration.""" if time_dict: try: return Duration(seconds=time_dict['sec'], nanoseconds=time_dict['nsec']) except KeyError: raise ValueError( ...
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def gen_ex_tracking_df(subj_dir): """Generate subject tracking error data frames from time series CSVs. This method generates tracking error (Jaccard distance, CSA, T, AR) data frames from raw time series CSV data for a single subject. Args: subj_dir (str): path to subject data directory, incl...
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def getCentral4Asics(evt, type, key): """Adds a one-dimensional stack of its 4 centermost asics to ``evt["analysis"]["central4Asics"]``. Args: :evt: The event variable :type(str): The event type (e.g. photonPixelDetectors) :key(str): The event key (e.g. CCD) :Authors: ...
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def mse(y_true: np.ndarray, y_pred: np.ndarray) -> float: """Compute the MSE (Mean Squared Error).""" return sklearn.metrics.mean_squared_error(y_true, y_pred)
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def run_single_thread(experiment: Experiment, thread_ids: list, distances: dict, times: dict, matchings: dict, printing: bool) -> None: """ Single thread for computing distances """ for election_id_1, election_id_2 in thread_ids: if printing: print...
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def test_insert_empty_tree(empty_ktree): """Test insert into empty tree.""" empty_ktree.insert(1, None) assert empty_ktree.root.val == 1
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def test_ar_raw(): """Test fitting AR model on raw data.""" raw = io.read_raw_fif(raw_fname).crop(0, 2).load_data() raw.pick_types(meg='grad') # pick MEG gradiometers for order in (2, 5, 10): coeffs = fit_iir_model_raw(raw, order)[1][1:] assert_equal(coeffs.shape, (order,)) a...
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def test_known_good() -> None: """Test to see if known good strings pass verification.""" data = [ 'HELLOW' 'TFSI4JR', 'JDLULAG', 'BMQRZPX', 'V6B4ORO', 'BMRJXQ7', 'LZYMFSV', '7JWZVIK', 'UZI5F4A', 'AWCWP3K', 'PQCFBLJ', ...
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def policy_improvement(env, V, gamma): """ Obtain an improved policy based on the values @param env: OpenAI Gym environment @param V: policy values @param gamma: discount factor @return: the policy """ n_state = env.observation_space.n n_action = env.action_space.n policy = torch...
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def loudness_zwst_freq(spectrum, freqs, field_type="free"): """Zwicker-loudness calculation for stationary signals Calculates the acoustic loudness according to Zwicker method for stationary signals. Normatice reference: ISO 532:1975 (method B) DIN 45631:1991 ISO 532-1:2017 (met...
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def func(back=2): """ Returns the function name """ return "{}".format(sys._getframe(back).f_code.co_name)
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def normU(u): """ A function to scale Uranium map. We don't know what this function should be """ return u
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def test_save_topic_figures(): """Writes out images for topics. """ model_file = join(get_test_data_path(), 'gclda_model.pkl') temp_dir = join(get_test_data_path(), 'temp') model = Model.load(model_file) model.save_topic_figures(temp_dir, n_top_words=5) figures = glob(join(temp_dir, '*.png'...
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def exact_riemann_solution(q_l, q_r, gamma=1.4, phase_plane_curves=False): """Return the exact solution to the Riemann problem with initial states q_l, q_r. The solution is given in terms of a list of states, a list of speeds (each of which may be a pair in case of a rarefaction fan), and a fu...
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def check_admin(): """ This function prevents non-admins from accessing this page and is called on every route """ if not current_user.is_admin: abort(403)
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def show_edge_scatter(N, s1, s2, t1, t2, d, dmax=None, fig_ax=None): """Draw the cell-edge contour and the displacement vectors. The contour is drawn using a scatter plot to color-code the displacements.""" if fig_ax is None: fig, ax = plt.subplots() else: fig, ax = fig_ax plt.f...
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def aiobotocore_client(service, tracer): """Helper function that creates a new aiobotocore client so that it is closed at the end of the context manager. """ session = aiobotocore.session.get_session() endpoint = LOCALSTACK_ENDPOINT_URL[service] client = session.create_client( service, ...
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def get_A2_const(alpha1, alpha2, lam_c, A1): """Function to compute the constant A2. Args: alpha1 (float): The alpha1 parameter of the WHSCM. alpha2 (float): The alpha2 parameter of the WHSCM. lam_c (float): The switching point between the two exponents of the dou...
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def dark(app): """ Apply Dark Theme to the Qt application instance. Args: app (QApplication): QApplication instance. """ darkPalette = QtGui.QPalette() # base darkPalette.setColor(QtGui.QPalette.WindowText, QtGui.QColor(180, 180, 180)) darkPalette.setColor(QtGui.QPalette.B...
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def test_contract_manager_json(tmpdir): """ Check the ABI in contracts.json """ precompiled_path = Path(str(tmpdir)).joinpath('contracts.json') ContractManager(contracts_source_path()).compile_contracts(precompiled_path) # try to load contracts from a precompiled file contract_manager_meta(precompil...
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def args_parser(): """ Parese command line arguments Args: opt_args: Optional args for testing the function. By default sys.argv is used Returns: args: Dictionary of args. Raises: ValueError: Raises an exception if some arg values are invalid. """ # Constr...
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def _parse_seq_tf_example(example, uint8_features, shapes): """Parse tf.Example containing one or two episode steps.""" def to_feature(key, shape): if key in uint8_features: return tf.io.FixedLenSequenceFeature( shape=[], dtype=tf.string, allow_missing=True) else: return tf.io.FixedLen...
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def unique_list(a_list, unique_func=None, replace=False): """Unique a list like object. - collection: list like object - unique_func: the filter functions to return a hashable sign for unique - replace: the following replace the above with the same sign Return the unique subcollection of collectio...
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def update_topics (graph, frags, known_topics, topic_id, phrase, pub_id, rank, count): """ update the known topics """ if topic_id not in known_topics: t = { "uuid": topic_id, "label": phrase, "used": False, "pubs": [] } known_...
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def airflow_runtime_instance(): """Creates an airflow RTC and removes it after test.""" instance_name = "valid_airflow_test_config" instance_config_file = Path(__file__).parent / "resources" / "runtime_configs" / f"{instance_name}.json" with open(instance_config_file, "r") as fd: instance_config...
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def calculate_attitude_angle(eccentricity_ratio): """Calculates the attitude angle based on the eccentricity ratio. Parameters ---------- eccentricity_ratio: float The ratio between the journal displacement, called just eccentricity, and the radial clearance. Returns ------- ...
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def enc_obj2bytes(obj, max_size=4094): """ Encode Python objects to PyTorch byte tensors """ assert max_size <= MAX_SIZE_LIMIT byte_tensor = torch.zeros(max_size, dtype=torch.uint8) obj_enc = pickle.dumps(obj) obj_size = len(obj_enc) if obj_size > max_size: raise Exception( ...
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def featCompression (feats, deltas, deltas2): """ Returns augmented feature vectors for all cases. """ feats_total = np.zeros (78) for i in range (len (feats)): row_total = np.array ([]) feat_mean = np.mean (np.array (feats[i]), axis = 0) delt_mean = np.mean (np.array (deltas...
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def _array_indexing(array, key, key_dtype, axis): """Index an array or scipy.sparse consistently across NumPy version.""" if np_version < parse_version('1.12') or issparse(array): # Remove the check for NumPy when using >= 1.12 # check if we have an boolean array-likes to make the proper indexin...
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def retryable(fun: Callable[[Any], None], re_init_func: Callable[[], Any], max_tries: int, *args: Dict[str, Any]): """ Retries the function multiple times, based on the max_tries :param max_tries: max number of tries :type max_tries: ``int`` :param fun: main function to retry :ty...
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def get_stock_ledger_entries(previous_sle, operator=None, order="desc", limit=None, for_update=False, debug=False, check_serial_no=True): """get stock ledger entries filtered by specific posting datetime conditions""" conditions = " and timestamp(posting_date, posting_time) {0} time...
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def test_binary(test_data, model, criterion, batch_size, device, generate_batch=None): """Calculate performance of a Pytorch binary classification model Parameters ---------- test_data : torch.utils.data.Dataset Pytorch dataset model: torch.nn.Module Pytorch Model criterion: fun...
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def linear_imputer(y, missing_values=np.nan, copy=True): """ Replace missing values in y with values from a linear interpolation on their position in the array. Parameters ---------- y: list or `numpy.array` missing_values: number, string, np.nan or None, default=`np.nan` The placeholder...
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def dump_json(gto, k, verbose=False): """ Print out the json representation of some data :param gto: the json gto :param k: the key to dump (none for everything) :param verbose: more output :return: """ if k: if k in gto: print(json.dumps(gto[k], indent=4)) e...
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def gap2d_cx(cx): """Accumulates complexity of gap2d into cx = (h, w, flops, params, acts).""" cx["h"] = 1 cx["w"] = 1 return cx
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def test_is_not_healthy(requests_mock): """ Test is not healthy response """ metadata = Gen3Metadata("https://example.com") def _mock_request(url, **kwargs): assert url.endswith("/_status") mocked_response = MagicMock(requests.Response) mocked_response.status_code = 500 ...
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def kernelTrans(X, A, kTup): """ 通过核函数将数据转换更高维的空间 Parameters: X - 数据矩阵 A - 单个数据的向量 kTup - 包含核函数信息的元组 Returns: K - 计算的核K """ m,n = np.shape(X) K = np.mat(np.zeros((m,1))) if kTup[0] == 'lin': K = X * A.T #线性核函数,只进行内积。 elif kTup[0] == 'rbf': #高斯核函数,根据高斯核函数公式进行计算 for j i...
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def getBusEquipmentData(bhnd,paraCode): """ Retrieves the handle of all equipment of a given type (paraCode) that is attached to bus []. Args : bhnd : [bus handle] nParaCode : code data (BR_nHandle,GE_nBusHnd...) Returns: [][] = [len(bhnd)] [len(all equ...
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def build_and_register( client: "prefect.Client", flows: "List[FlowLike]", project_id: str, labels: List[str] = None, force: bool = False, ) -> Counter: """Build and register all flows. Args: - client (prefect.Client): the prefect client to use - flows (List[FlowLike]): the ...
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def helper_reset_page_retirements(handle, gpuId=0, reset_sbe=False): """ Helper function to reset non volatile page retirements. """ ret = dcgm_internal_helpers.inject_field_value_i64(handle, gpuId, dcgm_fields.DCGM_FI_DEV_RETIRED_DBE, 0, -30) # set the injected data to 30 seconds ago assert...
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def generate_path_to_bulk_roms( roms: List[models.BulkSystemROMS]) -> List[models.BulkSystemROMS]: """Creates the absolute path to where each rom should be downloaded""" for system in roms: for section in system.Sections: if not 'number' in section.Section: path: str ...
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def parse_args(args=sys.argv[1:]): """ Get the parsed arguments specified on this script. """ parser = argparse.ArgumentParser(description="") parser.add_argument( 'path_to_xml', action='store', type=str, help='Ful path to tei file.') parser.add_argument( 'o...
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def send_voting_location_sms(email, phone, fields): """Opts-in to SMS and sends caucus/polling location address text message. We do two Mobile Commons API calls: 1. Create or update profile, with a state-specific opt-in path. If the number is new to our national Mobile Commons campaign, ...
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def creer_element_xml(nom_elem,params): """ Créer un élément de la relation qui va donner un des attributs. Par exemple, pour ajouter le code FANTOIR pour une relation, il faut que le code XML soit <tag k='ref:FR:FANTOIR' v='9300500058T' />" Pour cela, il faut le nom de l'élément (ici tag) et un diction...
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def get_display(): """Getter function for the display keys Returns: list: list of dictionary keys """ return data.keys()
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