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def extract_and_resize_frames(path, resize_to=None): """ Iterate the GIF, extracting each frame and resizing them Returns: An array of all frames """ mode = analyseImage(path)["mode"] im = PImage.open(path) if not resize_to: resize_to = (im.size[0] // 2, im.size[1] // 2) ...
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def create(self, node=None): """Test the RBAC functionality of the `CREATE VIEW` command. """ Scenario(run=create_without_create_view_privilege) Scenario(run=create_with_create_view_privilege_granted_directly_or_via_role) Scenario(run=create_with_revoked_create_view_privilege_revoked_directly_or_fro...
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def voter_star_off_save_doc_view(request): """ Show documentation about voterStarOffSave """ url_root = WE_VOTE_SERVER_ROOT_URL template_values = voter_star_off_save_doc.voter_star_off_save_doc_template_values(url_root) template_values['voter_api_device_id'] = get_voter_api_device_id(request) ...
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def generate_offsets(size_map, flow_map=None, kernel_shape=(3, 3, 3), dilation=(1, 1, 1)): """ Generates offsets for deformable convolutions from scalar maps. Maps should be of shape NxCxDxHxW, i.e. one set of parameters for every pixel. ``size_map`` and ``orientation_map`` expect a single channel, and flow_m...
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def lighten_color(color, amount=0.5): """ Lightens the given color by multiplying (1-luminosity) by the given amount. Input can be matplotlib color string, hex string, or RGB tuple. Examples: >> lighten_color("g", 0.3) >> lighten_color("#F034A3", 0.6) >> lighten_color((.3,.55,.1), 0...
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def unf_gas_density_kgm3(t_K, p_MPaa, gamma_gas, z): """ Equation for gas density :param t_K: temperature :param p_MPaa: pressure :param gamma_gas: specific gas density by air :param z: z-factor :return: gas density """ m = gamma_gas * 0.029 p_Pa = 10 ** 6 * p_MPaa rho_gas =...
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def main() -> None: """Read hexadecimal string and converted to binary string.""" with open(INPUT_FILE, encoding='utf-8') as input_file: packet = hex2ba(input_file.readline().strip()) program = [] parse_packet(program, packet) print(f'Part One: Sum of all versions parsed: {sum_versions(progr...
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def poll(): """Get Modbus agent data. Performance data from Modbus enabled targets. Args: None Returns: agentdata: AgentPolledData object for all data gathered by the agent """ # Initialize key variables. config = Config() _pi = config.polling_interval() # Initia...
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def dot_product_timer(x_shape=(5000, 5000), y_shape=(5000, 5000), mean=0, std=10, seed=8053): """ A timer for the formula array1.dot(array2). Inputs: x_shape: Tuple of 2 Int Shape of array1; y_shape: Tupl...
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def run_migrations(app=None): """ Run the migrations to the database Usage: fab run_migrations:app_name """ with virtualenv(env.virtualenv): with cd(env.code_dir): if getattr(env, 'initial_deploy', False): run_venv("./manage.py syncdb --all") run_v...
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def ref_icrs_fk5(fnout='icrs_fk5.csv'): """ Accuracy tests for the ICRS (with no E-terms of aberration) to/from FK5 conversion, with arbitrary equinoxes and epoch of observation. """ import starlink.Ast as Ast np.random.seed(12345) N = 200 # Sample uniformly on the unit sphere. These...
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def availible_files(path:str, contains:str='') -> list: """Returns the availible files in directory Args: path(str): Path to directory contains(str, optional): (Default value = '') Returns: Raises: """ return [f for f in os.listdir(path) if contains in f]
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def init_pretraining_params(exe, pretraining_params_path, main_program): """init pretraining params""" assert os.path.exists(pretraining_params_path ), "[%s] cann't be found." % pretraining_params_path def existed_params(var)...
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def npareatotal(values, areaclass): """ numpy area total procedure :param values: :param areaclass: :return: """ return np.take(np.bincount(areaclass,weights=values),areaclass)
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def create_aerocode_wrapper(aerocode_params, output_params, options): """ create wind code wrapper""" solver = 'FAST' # solver = 'HAWC2' if solver=='FAST': ## TODO, changed when we have a real turbine # aero code stuff: for constructors from AeroelasticSE.FusedFAST import openF...
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def register_todo_update(callback): """ Register a callback to be called when the number of tutorials changes """ dbus.SessionBus().add_signal_receiver( callback, "update_tuto_num", LIBTUTO_DBUS_INTERFACE, None, None)
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def lqr_ofb_cost(K, R, Q, X, ss_o): # type: (np.array, np.array, np.array, np.array, control.ss) -> np.array """ Cost for LQR output feedback optimization. @K gain matrix @Q process noise covariance matrix @X initial state covariance matrix @ss_o open loop state space system @return cost...
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def test_stack_str_format_on_empty(empty_stack): """ Do we get the expected str return on empty stack """ expected = 'Top: None | Length: 0' actual = str(empty_stack) assert expected == actual
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def steadystate_floquet(H_0, c_ops, Op_t, w_d=1.0, n_it=3, sparse=False): """ Calculates the effective steady state for a driven system with a time-dependent cosinusoidal term: .. math:: \\mathcal{\\hat{H}}(t) = \\hat{H}_0 + \\mathcal{\\hat{O}} \\cos(\\omega_d t) Parameters ...
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def gsl_blas_dtrmm(*args, **kwargs): """ gsl_blas_dtrmm(CBLAS_SIDE_t Side, CBLAS_UPLO_t Uplo, CBLAS_TRANSPOSE_t TransA, CBLAS_DIAG_t Diag, double alpha, gsl_matrix A, gsl_matrix B) -> int """ return _gslwrap.gsl_blas_dtrmm(*args, **kwargs)
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def scale(value, upper, lower, min_, max_): """Scales value between upper and lower values, depending on the given minimun and maximum value. """ numerator = ((lower - upper) * float((value - min_))) denominator = float((max_ - min_)) return numerator / denominator + upper
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def conditional_response(view, video=None, **kwargs): """ Redirect to login page if user is anonymous and video is private. Raise a permission denied error if user is logged in but doesn't have permission. Otherwise, return standard template response. Args: view(TemplateView): a video-speci...
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def Flatten(nmap_list): """Flattens every `.NestedMap` in nmap_list and concatenate them.""" ret = [] for x in nmap_list: ret += x.Flatten() return ret
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def get_data_schema() -> T.StructType: """ Return the kafka data schema """ return T.StructType( [T.StructField('key', T.StringType()), T.StructField('message', T.StringType())] )
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def build_graph(num: int = 0) -> (int, List[int]): """Build a graph of num nodes.""" if num < 3: raise app.UsageError('Must request graph of at least 3 nodes.') weight = 5.0 nodes = [(0, 1, 1.0), (1, 2, 2.0), (0, 2, 3.0)] for i in range(num-3): l = random.sample(range(0, 3 + i - 1),...
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async def test_locator_run_exception(config, mocker): """Test an error doesn't kill the Locator.""" logger_mock = mocker.MagicMock() p = Locator(config, logger_mock) p.last_work_end_timestamp = None p._do_work = AsyncMock() p._do_work.side_effect = [Exception("bad thing happen!")] await p.ru...
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def concatenate(boxes_list:List[Boxes], fields:Collection[str]=None) -> Boxes: """Merge multiple boxes to a single instance B = A[:10] C = A[10:] D = concatenate([A, B]) D should be equal to A """ if not boxes_list: if fields is None: fields = [] return empty(*fie...
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def detect_peaks(array, freq=0, cthr=0.2, unprocessed_array=False, fs=44100): """ Function detects the peaks in array, based from the mirpeaks algorithm. :param array: Array in which to detect peaks :param freq: Scale representing the x axis (sample length as array) :p...
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def left_index_iter(shape): """Iterator for the left boundary indices of a structured grid.""" return range(0, shape[0] * shape[1], shape[1])
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def calculate_precision_recall(df_merged): """Calculates precision and recall arrays going through df_merged row-wise.""" all_positives = get_all_positives(df_merged) # Populates each row with 1 if this row is a true positive # (at its score level). df_merged["is_tp"] = np.where( (df_merged...
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def combine(shards, judo_file): """combine this class is passed the """ # Recombine the shards to create the kek combined_shares = Shamir.combine(shards) combined_shares_string = "{}".format(combined_shares) # decrypt the dek uysing the recombined kek decrypted_dek = decrypt( j...
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def shiftRightUnsigned(e, numBits): """ :rtype: Column >>> from pysparkling import Context >>> from pysparkling.sql.session import SparkSession >>> from pysparkling.sql.functions import shiftLeft, shiftRight, shiftRightUnsigned >>> spark = SparkSession(Context()) >>> df = spark.range(-5, 4)...
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def test_jenkinslts_home_exists(host): """ Tests if jenkins home directory exists. """ assert host.file(PACKAGE_HOME).exists
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def change_wallpaper_job(profile, force=False): """Centralized wallpaper method that calls setter algorithm based on input prof settings. When force, skip the profile name check """ with G_WALLPAPER_CHANGE_LOCK: if profile.spanmode.startswith("single") and profile.ppimode is False: t...
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def transact(): """Sends an API request to the VCC exchange""" # Sets a quantity range to sell. Example: (10,15) randomly selects a number between 10 and 15 quantity = round(random.uniform(10, 15), 2) # Coin to trade (FCT, ADA, BTC etc...) coin = 'fct' # Base currency coin is denominated in (B...
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def get_type_hints(obj, globalns=None, localns=None, include_extras=False): """Return type hints for an object. This is often the same as obj.__annotations__, but it handles forward references encoded as string literals, adds Optional[t] if a default value equal to None is set and recursively replaces ...
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def sheets_from_excel(xlspath): """ Reads in an xls(x) file, returns an array of arrays, like: Xijk, i = sheet, j = row, k = column (but it's not a np ndarray, just nested arrays) """ wb = xlrd.open_workbook(xlspath) n_sheets = wb.nsheets sheet_data = [] for sn in xrange(n_sheets...
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def metadata(ctx, drafts, path): """List metadata for [PROJECT] [VERSION]""" _rws = partial(rws_call, ctx) if len(path) == 0: _rws(MetadataStudiesRequest(), default_attr='oid') elif len(path) == 1: if drafts: _rws(StudyDraftsRequest(path[0]), default_attr='oid') else:...
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def fitStatmechPseudoRotors(Tlist, Cvlist, Nvib, Nrot, molecule=None): """ Fit `Nvib` harmonic oscillator and `Nrot` hindered internal rotor modes to the provided dimensionless heat capacities `Cvlist` at temperatures `Tlist` in K. This method assumes that there are enough heat capacity points provi...
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def send_notification(to, subject, body, username=None, password=None, smtp_server=None, port=None): """ Send an email or text notification to the given recipient. email accou...
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def plot_summary(labels, label2array, xlim=100, ylim=None, logscale=True, ylabel='Regret', xlabel='BO Iters', method='mean', title=None, violin_trials=None, ...
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def add_numbers(a, b): """Sums the given numbers. :param int a: The first number. :param int b: The second number. :return: The sum of the given numbers. >>> add_numbers(1, 2) 3 >>> add_numbers(50, -8) 42 """ return a + b
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def get_version(table_name): """Get the most recent version number held in a given table.""" db = get_db() cur = db.cursor() cur.execute("select * from {} order by entered_on desc".format(table_name)) return cur.fetchone()["version"]
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def area(a, indices=(0, 1, 2, 3)): """ :param a: :param indices: :return: """ x0, y0, x1, y1 = indices return (a[..., x1] - a[..., x0]) * (a[..., y1] - a[..., y0])
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def latest_file(path_name, keyword='', ext='', **kwargs) -> str: """ Latest modified file in folder Args: path_name: full path name keyword: keyword to search ext: file extension Returns: str: latest file name """ files = sort_by_modified( all_files(path...
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def like_bp_gauss_mix_loop_nbin(grid_dir, n_bps, n_zbin, lmax_like, lmin_like, lmax_in, lmin_in, fid_pos_pos_dir, fid_she_she_dir, fid_pos_she_dir, pos_nl_path, she_nl_path, mixmats_path, bp_cov_filemask, binmixmat_save_dir, obs_bp_save_dir, varied_params,...
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def infer_tf_dtypes(image_array): """ Choosing a suitable tf dtype based on the dtype of input numpy array. """ return dtype_casting( image_array.dtype[0], image_array.interp_order[0], as_tf=True)
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def write_unique_genera(): """Writes unique genera to the output file Output: - written file """ with open(argv[1]) as inf: all_lines = inf.readlines() all_genera = [] for line in all_lines: genus = line.strip().split()[0] if genus not in all_genera: ...
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def test_thread_crew(count): """ thread_crew() creates multiple worker threads, reading from one Channel and writing to another. """ def worker(value, check, out_chnl): out_chnl.put((value, threading.get_ident())) if value == count - 1: out_chnl.end() # Now sleep ...
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def get_cifar10_datasets(n_devices, batch_size=256, normalize=False): """Get CIFAR-10 dataset splits.""" if batch_size % n_devices: raise ValueError("Batch size %d isn't divided evenly by n_devices %d" % (batch_size, n_devices)) train_dataset = tfds.load('cifar10', split='train[:90%]') ...
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def predict(dataset, fitmodel_url, save_results=True, show=False): """ Function starts a job that makes predictions to input data with a given model Parameters ---------- input - dataset object with input urls and other parameters fitmodel_url - model created in fit phase save_results - sav...
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def test_multiple_config_to_csv(log_basic_config_reader): """ Assert that multiple reads and writes are supported by config_to_csv. """ config, config_reader = log_basic_config_reader log_dir = os.path.dirname(config_reader.data["log_dir"]) for _ in range(5): config_to_csv(config_reader...
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def format_string_to_json(balance_info): """ Format string to json. e.g: '''Working Account|KES|481000.00|481000.00|0.00|0.00''' => {'Working Account': {'current_balance': '481000.00', 'available_balance': '481000.00', 'reserved_balance': '0.00', 'uncleared_balance': '0.00'}} """ balance_dict = frappe._dic...
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def get_relevant_texts(subject: Synset, doc_threshold: float) -> Tuple[List[str], List[int], int, int]: """Get all lines from all relevant articles. Also return the number of retrieved documents and retained ones.""" article_dir = get_article_dir(subject) rel_path = get_relevant_scores_path(subject) s...
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def plot_mae(X, y, model): """ Il est aussi pertinent de logger les graphiques sous forme d'artifacts. """ fig = plt.figure() plt.scatter(y, model.predict(X)) plt.xlabel("Durée réelle du trajet") plt.ylabel("Durée estimée du trajet") image = fig fig.savefig("MAE.png") plt.cl...
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def test_precision_epoch(): """ Check that input via epoch also has full precision, i.e., against regression on https://github.com/astropy/astropy/pull/366 """ t_utc = Time(range(1980, 2001), format='jyear', scale='utc') t_tai = Time(range(1980, 2001), format='jyear', scale='tai') dt = t_utc...
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def compile_options( rst_roles: Optional[List[str]], rst_directives: Optional[List[str]], *, allow_autodoc: bool = False, allow_toolbox: bool = False, ): """ Compile the list of allowed roles and directives. :param rst_roles: :param rst_directives: :param allow_autodoc: :param allow_toolbox: """ d...
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def get_pure_function(method): """ Retreive pure function, for a method. Depends on features specific to CPython """ assert(isinstance(method, types.MethodType)) assert(hasattr(method, 'im_func')) return method.im_func
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def test_failure_of_just_reload(): """ Test that really_reload is _actually_ needed in this test case This test exists to check that the test before it is actually testing what needs to be tested """ from importlib import reload, invalidate_caches setup_old_math_lib() invalidate_caches...
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def _agg_samples_2d(sample_df: pd.DataFrame) -> pd.DataFrame: """Aggregate ENN samples for plotting.""" def pct_95(x): return np.percentile(x, 95) def pct_5(x): return np.percentile(x, 5) enn_df = (sample_df.groupby(['x0', 'x1'])['y'] .agg([np.mean, np.std, pct_5, pct_95]).reset_index()) e...
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def get_np_num_array_str(data_frame_rows): """ Get a complete code str that creates a np array with random values """ test_code = cleandoc(""" from sklearn.preprocessing import StandardScaler import pandas as pd from numpy.random import randint series = randint(0,100,siz...
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def get_config(name: str = None, default: Any = _MISSING) -> Any: """Gets the global configuration. Parameters ---------- name : str, optional The name of the setting to get the value for. If no name is given then the whole :obj:`Configuration` object is returned. default : optiona...
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def domain_domain_distance(ptg1, ptg2, pdb_struct, domain_distance_dict): """ Return the distance between two domains, which will be defined as the distance between their two closest SSEs (using SSE distnace defined in ptdistmatrix.py) Parameters: ptg1 - PTGraph2 object for one domain ...
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def rip_subtitles(): """ %prog <dvd_source> """ logging.basicConfig(level=logging.INFO) parser = argparse.ArgumentParser(usage=trim(encode_dvd.__doc__)) parser.add_argument( '-t', '--title', help='enter the dvd title number to process', default='' ) parser.add_argument('-s', '--...
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def main(): """ generate a sales example with tables for customers, sales, products """ s = content.DataFiles() date_list = generate.get_list_dates(2016, 2016, 500) prod_list = list(s.get_collist_by_name(os.path.join(content.data_fldr,'food','garden_produce.csv'), 'name')[0]) t...
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def pred_error(f_pred, prepare_data, data, iterator, max_len, n_words, filter_h): """ compute the prediction error. """ valid_err = 0 for _, valid_index in iterator: x = [data[0][t] for t in valid_index] x = prepare_data(x,max_len,n_words,filter_h...
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def standardize_10msample(frac: float=0.01): """Runs each data processing function in series to save a new .csv data file. Intended for Pandas DataFrame. For Dask DataFrames, use standardize_10msample_dask Args: frac (float, optional): Fraction of data file rows to sample. Defaults to 0.01. Re...
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def test_assign_resolution_bins(data_fmodel, bins, inplace, return_labels): """Test DataSet.assign_resolution_bins""" result = data_fmodel.assign_resolution_bins(bins=bins, inplace=inplace, return_labels=return_...
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def put(bucket, key, val): """ Writes key-value pair to storage. :param bucket: (string) A bucket name. :param key: (string) A key name. :param val: (bytes) Value to write. """ _check_bucket(bucket) if not isinstance(val, bytes): raise TypeError("value should be of type bytes") ...
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def smatrix_backward_kernel_S(z, phase_factors, mean_probe_intensities, r, r_min, out, tau): """ S-matrix has beam tilts included, pre-calculated scanning phase factors. Fastest to compute :param z: D x K x MY x MX x 2 :param phase_factors: B x D x K x 2 :param r...
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def is_ansible_managed(file_path): """ Gets whether the fail2ban configuration file at the given path is managed by Ansible. :param file_path: the file to check if managed by Ansible :return: whether the file is managed by Ansible """ with open(file_path, "r") as file: return file.readli...
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def delete_samples_generic_database(exec_tag, testcase_name=None): """ delete existing samples of given testcase """ db_path = os.getenv("WAR_TOOLS_DIR") + "/generic_samples.db" con = sqlite3.connect(db_path) statement = "SELECT name FROM sqlite_master WHERE type='table';" if ('GEN_RESULTS_TABLE',) ...
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def sumai(array): """ Return the sum of the elements of an integer array. http://naif.jpl.nasa.gov/pub/naif/toolkit_docs/C/cspice/sumai_c.html :param array: Input Array. :type array: Array of ints :return: The sum of the array. :rtype: int """ n = ctypes.c_int(len(array)) array...
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def _get_connection_dir(app): """Gets the connection dir to use for the IPKernelApp""" connection_dir = None # Check the pyxll config first cfg = get_config() if cfg.has_option("JUPYTER", "runtime_dir"): connection_dir = cfg.get("JUPYTER", "runtime_dir") if not os.path.abspath(conne...
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def download(accession): """Downloads GEO file based on accession number. Returns a SOFTFile or ANNOTFile instance. For reading and unzipping binary chunks, see: http://stackoverflow.com/a/27053335/1830334 http://stackoverflow.com/a/2424549/1830334 """ import os if 'GPL' not in accession: # soft file geo_...
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def invoke( node: Union[DAG, Task], params: Optional[Mapping[str, Any]] = None, ) -> Mapping[str, NodeOutput]: """ Invoke a node with a series of parameters. Parameters ---------- node Node to execute params Inputs to the task, indexed by input/parameter name. Ret...
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def test_adder1_config(): """Test adder1_offset kwarg from config """ configfy.set_active_config_file('./tests/test_config.ini') assert adder1(1, 1) == 3, 'Offset not read from config!'
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def convert_acl_to_iam_policy(acl): """Converts the legacy ACL format to an IAM Policy proto.""" owners = acl.get('owners', []) readers = acl.get('readers', []) if acl.get('all_users_can_read', False): readers.append('allUsers') writers = acl.get('writers', []) bindings = [] if owners: bindings.ap...
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def fix_module_doctest(module): """ Extract docstrings from cython functions, that would be skipped by doctest otherwise. """ module.__test__ = {} for name in dir(module): value = getattr(module, name) if (isinstance(value, numbawrapper.NumbaWrapper) and from_modu...
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def get_valid_start_end(mask): """ Args: mask (ndarray of bool): invalid mask Returns: """ ns = mask.shape[0] nt = mask.shape[1] start_idx = np.full(ns, -1, dtype=np.int32) end_idx = np.full(ns, -1, dtype=np.int32) for s in range(ns): # scan from start to the end ...
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def put_network_object(session, key, data): # type: (Session, Text, Any) -> None """Put data as extended object with given key for the current network.""" url_tail = "/{}/{}/{}".format( CoordConstsV2.RSC_NETWORKS, session.network, CoordConstsV2.RSC_OBJECTS ) _put_stream(session, url_tail, da...
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def pahrametahrize(*args, **kwargs) -> t.Callable: """Pass arguments straight through to `pytest.mark.parametrize`.""" return pytest.mark.parametrize(*args, **kwargs)
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def utcnow(): """Return the current time in UTC with a UTC timezone set.""" return datetime.utcnow().replace(microsecond=0, tzinfo=UTC)
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def default_to(default, value): """ Ramda implementation of default_to :param default: :param value: :return: """ return value or default
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def copy_one_class_images_labels(path_to_images, path_to_labels, target_path, image_type='.png', label_suffix='-labels'): """ copy images which contain only one class label Args: path_to_images: path to the images path_to_labels: path to the labels ...
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def dummy(): """ >>> import gym >>> env = gym.make("FetchReachCSL-v1") >>> _ = env.seed(0) >>> _ = env.reset() >>> for _ in range(5): ... obs, rew, _, info = env.step(env.action_space.sample()) ... rew2 = env.compute_reward(obs['achieved_goal'], obs['desired_goal'], dict()) ....
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def main(page_size: int = 10000, period: str = "daily", adjust: str = ""): """ 下载入口程序 :param page_size: a市场46多只,这里默认10000,即下载全部 :param period: 日线:daily; 周线:weekly; 月线: monthly :param adjust: 复权类型,前复权:"qfq";后复权:"hfq";"不复权":"", 默认不复权 :return: """ res = json.loads(requests_get(a_detail_url(...
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def insertGraph(): """ Create a new graph """ root = Xref.getroot().elem ref = getNewRef() elem = etree.Element(etree.QName(root, sgraph), reference=ref) name = makeNewName(sgraph, elem) root.append(elem) Xref.setDirty() return name, (elem, newDotGraph(name, ref, elem))
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def get_line_notif(line_data: str): """ Извлечь запись из таблицы. :param line_data: запрашиваемая строка """ try: connection = psycopg2.connect( user=USER, password=PASSWORD, host="127.0.0.1", port="5432", database=DATABASE) ...
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def apply_user(username: str, password: str =None, extra_smb_groups: List[str] =None, no_default_smb_group: bool =False, **kwargs): """Add user or modify user Args: username: username password: password extra_smb_groups: extra groups besides default samba group to add ...
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def load_alloc_model(matfilepath, prefix): """ Load allocmodel stored to disk in bnpy .mat format. Parameters ------ matfilepath : str String file system path to folder where .mat files are stored. Usually this path is a "taskoutpath" like where bnpy.run saves its output. pr...
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def bouts_per_minute(boutlist): """Takes list of times of bouts in seconds, returns bpm = total_bouts / total_time.""" bpm = (total_bouts(boutlist) / total_time(boutlist)) * 60 return bpm
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def test_registration(windows): """Test that the manifest is properly regsistered. """ w = Workbench() w.register(CoreManifest()) w.register(ErrorsManifest()) w.register(PackagesManifest()) with signal_error_raise(): w.get_plugin('exopy.app.packages').collect_and_register() # ...
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def convert_to_snake_case(string: str) -> str: """Helper function to convert column names into snake case. Takes a string of any sort and makes conversions to snake case, replacing double- underscores with single underscores.""" s1 = re.sub('(.)([A-Z][a-z]+)', r'\1_\2', string) draft = re.sub('([a-...
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def test_ttl_action_first_encrypt(): """Test that when _last_updated has never been set, ttl_action returns TtlActions.EXPIRED.""" store = MagicMock(__class__=ProviderStore) provider = CachingMostRecentProvider(provider_store=store, material_name="my material", version_ttl=10.0) assert provider._last_u...
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def list_keys(client, keys): """ :param client: string :param keys: list of candidate keys :return: True if all keys exist, None otherwise """ objects = client.get_multi(keys) if bool(objects): return objects else: return None
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def write_fasta(df,out_file,seq_column="sequence",seq_name="pretty", write_only_keepers=True,empty_char="X-?",clean_sequence=False): """ df: data frame to write out out_file: output file seq_column: column in data frame to use as sequence seq_name: column in data frame to use as >NAM...
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def load_config(config_name): """ Load a configuration object from a file and return the object. The given configuration name must be a valid saved configuration. :param config_name: The name of the configuration file to load from. :return: The configuration object saved in that file. """ if...
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def estimate_variance(ip_image: np.ndarray, x: int, y: int, nbr_size: int) -> float: """Estimates local variances as described in pg. 6, eqn. 20""" nbrs = get_neighborhood(x, y, nbr_size, ip_image.shape[0], ip_image.shape[1]) vars = list() for channel in range(3): pixel_avg = 0 for i, j ...
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def api_key_regenerate(): """ Generate a new API key for the currently logged-in user. """ try: return flask.jsonify({ constants.api.RESULT: constants.api.RESULT_SUCCESS, constants.api.MESSAGE: None, 'api_key': database.user.generate_new_api_key(current_user.u...
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