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def _generate_indexed(array: IndexedArray) -> str: """Generate an indexed Bash array.""" return ( "(" + " ".join( f"[{index}]={_generate_string(value)}" for index, value in enumerate(array) if value is not None ) + ")" )
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def main(argv=None): """Main entry point.""" known_args = parse_cmdline(argv) metrics_dir = known_args.metrics_dir metrics_files = [ join(metrics_dir, f) for f in listdir(metrics_dir) if isfile(join(metrics_dir, f)) ] metrics = [read_metrics_file(f) for f in metrics_files] for m in metri...
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def up_date(dte, r_quant, str_unit, bln_post_colon): """ Adjust a date in the light of a (quantity, unit) tuple, taking account of any recent colon """ if str_unit == 'w': dte += timedelta(weeks=r_quant) elif str_unit == 'd': dte += timedelta(days=r_quant) elif str_unit ...
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def read_options() -> Options: """ read command line arguments and options Returns: option class(Options) Raises: NotInspectableError: the file or the directory does not exists. """ args: MutableMapping = docopt(__doc__) schema = Schema({ "<path>": And(Use(get_path)...
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def test_generator_single_input_2(): """ Feature: Test single str input Description: input str Expectation: success """ def generator_str(): for i in range(64): yield chr(ord('a') + i) class RandomAccessDatasetInner: def __init__(self): self.__data =...
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def to_keys_values_bson_dict_json(): """ Convert Document to generic python types. """ class User(Document): _id = fields.IntField() name = fields.StringField() user = User(_id=1, name="Jack") # to tuple assert user._fields_ordered == ("id", "name") # to keys asse...
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def SLINK(Dataset, d): """function to execute SLINK algo Args: Dataset(List) :- list of data points, who are also lists d(int) :- dimension of data points Returns: res(Iterables) :- list of triples sorted by the second element, first element is index of poin...
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def static_file(path='index.html'): """static_file""" return app.send_static_file(path)
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def lazy_property(function): """ Decorator to make a lazily executed property """ attribute = '_' + function.__name__ @property @wraps(function) def wrapper(self): if not hasattr(self, attribute): setattr(self, attribute, function(self)) return getattr(self, attribute) ...
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def basename(fname): """ Return file name without path. Examples -------- >>> fname = '../test/data/FSI.txt.zip' >>> print('{}, {}, {}'.format(*basename(fname))) ../test/data, FSI.txt, .zip """ if not isinstance(fname, path_type): fname = Path(fname) path, name, ext = f...
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def validate_lockstring(lockstring): """ Validate so lockstring is on a valid form. Args: lockstring (str): Lockstring to validate. Returns: is_valid (bool): If the lockstring is valid or not. error (str or None): A string describing the error, or None if no error w...
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def decode_geohash_collection(geohashes: Iterable[str]): """ Return collection of geohashes decoded into location coordinates. Parameters ---------- geohashes: Iterable[str] Collection of geohashes to be decoded Returns ------- Iterable[Tuple[float, float]] Collection o...
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def renormalize_sparse(A: sp.spmatrix) -> sp.spmatrix: """Get (D**-0.5) * A * (D ** -0.5), where D is the diagonalized row sum.""" A = sp.coo_matrix(A) A.eliminate_zeros() rowsum = np.array(A.sum(1)) assert np.all(rowsum >= 0) d_inv_sqrt = np.power(rowsum, -0.5).flatten() d_inv_sqrt[np.isinf...
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def load_gloria( name: str = "gloria_resnet50", device: Union[str, torch.device] = "cuda" if torch.cuda.is_available() else "cpu", ): """Load a GLoRIA model Parameters ---------- name : str A model name listed by `gloria.available_models()`, or the path to a model checkpoint containing ...
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def is_enabled(): """ Check if `ufw` is enabled :returns: True if ufw is enabled """ output = subprocess.check_output(['ufw', 'status'], universal_newlines=True, env={'LANG': 'en_US', ...
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def findExtraOverlayClasses(obj, clsList): """Determine the most appropriate class(es) for Chromium objects. This works similarly to L{NVDAObjects.NVDAObject.findOverlayClasses} except that it never calls any other findOverlayClasses method. """ if obj.role==controlTypes.ROLE_LISTITEM and obj.parent and obj.parent....
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def _fetch( self, targets=None, jobs=None, remote=None, all_branches=False, show_checksums=False, with_deps=False, all_tags=False, recursive=False, ): """Download data items from a cloud and imported repositories Returns: int: number of successfully downloaded files ...
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def get_connected_input_geometry(blend_shape): """ Return an array of blend_shape's input plugs that have an input connection. pm.listConnections should do this, but it has bugs when the input array is sparse. """ results = [] blend_shape_plug = _get_plug_from_node('%s.input' % blend_shape) num_input_elements ...
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async def test_monthly_config_flow(hass: HomeAssistant) -> None: """Test we get the form.""" await setup.async_setup_component(hass, "persistent_notification", {}) # Initialise Config Flow result = await hass.config_entries.flow.async_init( DOMAIN, context={"source": config_entries.SOURCE_USER}...
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def get_median_and_stdev(arr: torch.Tensor) -> Tuple[float, float]: """Returns the median and standard deviation from a tensor.""" return torch.median(arr).item(), torch.std(arr).item()
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def connect(user, host, port): """Create and return a new SSHClient connected to the given host.""" client = ssh.SSHClient() if not env.disable_known_hosts: client.load_system_host_keys() if not env.reject_unknown_hosts: client.set_missing_host_key_policy(ssh.AutoAddPolicy()) con...
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def _chf_to_pdf(t, x, chf, **chf_args): """ Estimate by numerical integration, using ``scipy.integrate.quad``, of the probability distribution described by the given characteristic function. Integration errors are not reported/checked. Either ``t`` or ``x`` must be a scalar. """ t = np.asarr...
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def ParseTraceLocationLine(msg): """Parse the location line of a stack trace. If successfully parsed, returns (filename, line, method).""" parsed = re.match(kCodeLocationLine, msg) if not parsed: return None try: return (parsed.group(1), parsed.group(2), parsed.group(3)) except IndexError as e: lo...
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def test_datasets(test_client): """Test datasets route.""" response = test_client.get("datasets") assert response.status_code == 200
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def get_rl_params(num, similarity_name, reward_name): """ Get RL model parameters (alpha and beta) based on <num>'s data. <similarity_name> is the name of the similarity metric you want to use, see fmri.catreward.roi.data.get_similarity_data() for details. <reward_name> is the name of the data to...
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def return_arg_type(at_position): """ Wrap the return value with the result of `type(args[at_position])` """ def decorator(to_wrap): @functools.wraps(to_wrap) def wrapper(*args, **kwargs): result = to_wrap(*args, **kwargs) ReturnType = type(args[at_position]) ...
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def extend(s, var, val): """Copy dict s and extend it by setting var to val; return copy.""" try: # Python 3.5 and later return eval('{**s, var: val}') except SyntaxError: # Python 3.4 s2 = s.copy() s2[var] = val return s2
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def rx_reduce(observable: Observable, accumulator: AccumulatorOperator, seed: Optional[Any] = None) -> Observable: """Create an observable which reduce source with accumulator and seed value. Args: observable (Observable): source accumulator (AccumulatorOperator): accumulator function (two argu...
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def test_build_manifest_fail2(): """Test recursive definition""" config_file = {'manifest': { '$BASE': '$TMP/share', '$TMP': '$BASE/share', }} with pytest.raises(Exception): cfg.__build_manifest(config_file)
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def predict(image: Image.Image): """ Take an image and run it through the inference model. This returns a ModelOutput object with all of the information that the model returns. Furthermore, bounding box coordinates are normalized. """ logging.debug("Sending image to model for inference ...") width,...
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def _make_header(): """ Make vcf header for SNPs in miRs """
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def minimum_filter( input, size=None, footprint=None, output=None, mode="reflect", cval=0.0, origin=0, ): """Multi-dimensional minimum filter. Args: input (cupy.ndarray): The input array. size (int or sequence of int): One of ``size`` or ``footprint`` must be ...
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def lowpass(data, cutoff=0.25, fs=30, order=2, nyq=0.75): """ Butter low pass filter for a single or spectra or a list of them. :type data: list[float] :param data: List of vectors in line format (each line is a vector). :type cutoff: float :param cutoff: Desired cutoff frequency o...
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def format(value, limit=LIMIT, code=True, offset=0, hard_stop=None, hard_end=0): """ Recursively dereferences an address into string representation, or convert the list representation of address dereferences into string representation. Arguments: value(int|list): Either the starting address to ...
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async def test_state_reporting(hass): """Test the state reporting.""" await async_setup_component( hass, SWITCH_DOMAIN, { SWITCH_DOMAIN: { "platform": DOMAIN, "entities": ["switch.test1", "switch.test2"], "all": "false", ...
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def sogs_put(client, url, json, user): """ PUTs a test `client` request to `url` with the given `json` as body and X-SOGS-* signature headers signing the request for `user`. """ data = dumps(json).encode() return client.put( url, data=data, content_type='application/json', headers=x_sog...
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def get_results(heading): """Get all records under a given record heading from PubChem/ Update results from those records.""" page = 1 results = {} with tqdm(total=100) as pbar: while True: url = (f"https://pubchem.ncbi.nlm.nih.gov/rest/pug_view/annotations/heading/" ...
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def create_dictionary(documents): """Creates word dictionary for given corpus. Parameters: documents (list of str): set of documents Returns: dictionary (gensim.corpora.Dictionary): gensim dicionary of words from dataset """ dictionary = Dictionary(documents) dictionary.compactif...
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def clone_bitarray(other, src=None): """ Fast clone of the bit array. The actual function used depends on the implementation :param other: :param src: :return: """ if FAST_IMPL_PH4 and src is not None: src.fast_copy(other) return src return to_bitarray(other)
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def _create_graph( expressions: List[expression.Expression], options: calculate_options.Options, feed_dict: Optional[Dict[expression.Expression, prensor.Prensor]] = None ) -> "ExpressionGraph": """Create graph and calculate expressions.""" expression_graph = OriginalExpressionGraph(expressions) canoni...
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def power_to_db(S, ref=1.0, amin=1e-10, top_db=80.0): """Convert a power spectrogram (amplitude squared) to decibel (dB) units This computes the scaling ``10 * log10(S / ref)`` in a numerically stable way. Parameters ---------- S : np.ndarray input power ref : scalar or callable ...
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def is__str__equal(obj): """ Asserts if the string representation equals the object type. """ assert isinstance(eval(str(obj)), type(obj))
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def generate_arn(service, arn_suffix, region=None): """Returns a formatted arn for AWS. Keyword arguments: service -- the AWS service arn_suffix -- the majority of the arn after the initial common data region -- the region (can be None for region free arns) """ arn_value = "arn"...
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def prod_list(lst): """returns the product of all numbers in a list""" if lst: res = 1 for num in lst: res *= num return res else: raise ValueError("List cannot be empty.")
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def plot(x, f, gradient, Name): """ Graphs a function """ fplot = plt.figure(figsize=(16,9)) axis = plt.axis() g= np.vectorize(f) y = g(x) grad = gradient(x) plt.xlim() plt.ylim() plt.xlabel("x") plt.ylabel("y") title = 'label {},label {}' plt.title(title.format(...
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def _main(argv): """ Handle arguments for the 'lumi-upload' command. """ parser = argparse.ArgumentParser( description=DESCRIPTION, formatter_class=argparse.RawDescriptionHelpFormatter, ) parser.add_argument( '-b', '--base-url', default=URL_BASE, h...
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def create_attribute(representation_uuid, attribute_name): """create a representation of an attribute of a representation""" try: uuid = get_bus().create_attribute(representation_uuid, attribute_name, public=True) return JsonResponse({'type': 'uuid', 'uuid': uuid}) except Exception as except...
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def get_current_git_hash(raise_on_error: bool = False) -> Optional[str]: """ Return git hash of the latest commit Parameters ---------- raise_on_error: bool, optional If False (default), will return None, when it fails to obtain commit hash. If True, will raise, when it fails to obtain ...
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def _raise_if_posterror(response): """raise error for failed POST request""" if response.status_code not in [200, 201]: LOG.error(response.text) raise SimpleHTTPException(response)
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def test_annot_sanitizing(tmpdir): """Test description sanitizing.""" annot = Annotations([0], [1], ['a;:b']) fname = str(tmpdir.join('custom-annot.fif')) annot.save(fname) annot_read = read_annotations(fname) _assert_annotations_equal(annot, annot_read) # make sure pytest raises error on c...
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def check_shift(start_time, end_time, final_minute, starting_minute, record): """ Função que verifica o turno da chamada e calcula o valor da ligação :param start_time: :param end_time: :param final_minute: :param starting_minute: :return value: """ nem_start_time = start_time + (st...
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def s3_avatar_represent(user_id, tablename="auth_user", gravatar=False, **attr): """ Represent a User as their profile picture or Gravatar @param tablename: either "auth_user" or "pr_person" depending on which table the 'user_id' refers to @param attr: additional H...
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def _activation_summary(x): """Helper to create summaries for activations. Creates a summary that provides a histogram of activations. Creates a summary that measure the sparsity of activations. Args: x: Tensor Returns: nothing """ # Remove 'tower_[0-9]/' from the name in case this is a multi-GPU ...
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def json_loader(path_to_json_file: str) -> Dict[str, List[str]]: """Reads a JSON file and converts its content in a dictionary. Parameters ---------- path_to_json_file: str The path to the JSON file. Returns ------- Dict[str, List[str]] A dictionary of source codes with the...
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def writeJson(fname, data): """ Writes a Json file """ try: with open(fname, 'w') as f: json.dump(data, f) except IOError: raise Exception('Could not open {0!s} for writing'.format((fname)))
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def main( args ): """Main allows selection of the main subcommand (aka function). Each subcommand launches a separate function. The pydoc subcommand launches pydoc on this overall program file. :param args: the main command line arguments passed minus subcommand """ #print globals().keys() if len(args) == 0 or ...
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def check(local_args): """ check args """ assert local_args.classes > 1 assert local_args.zoom_factor in [1, 2, 4, 8] assert local_args.split in ['train', 'val', 'test'] if local_args.arch == 'psp': assert (local_args.train_h - 1) % 8 == 0 and (local_args.train_w - 1) % 8 == 0 else: ...
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def test_manual_weights(tmpdir): """ 'regrid' will accept a SCRIP format weights file as the target """ a0 = xarray.DataArray( [[0, 1], [2, 3]], name="var", dims=["lat", "lon"], coords={"lat": [-45, 45], "lon": [0, 180]}, ) a0.lat.attrs["units"] = "degrees_north" ...
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def get_region_solution_attribute(data, region_id, attribute, func, intervention): """Extract region solution attribute""" regions = data.get('NEMSPDCaseFile').get('NemSpdOutputs').get('RegionSolution') for i in regions: if (i['@RegionID'] == region_id) and (i['@Intervention'] == intervention): ...
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def initialize_channels(): """Create the channel objects""" global_vars.CHANNEL_ARRAY.append(classes.Channel(0)) return
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def _reset_attributes(idaobject, attributes): """ Delete an attribute of a list of attributes of an object, if the attribute exists. """ if (not hasattr(attributes, "__iter__"))|isinstance(attributes, six.string_types): attributes = [attributes] for attribute in attributes: try: ...
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def test_macsec_psk_shorter_ckn(dev, apdev, params): """MACsec PSK (shorter CKN)""" try: ckn = "11223344" run_macsec_psk(dev, apdev, params, "macsec_psk_shorter_ckn", ckn0=ckn, ckn1=ckn) finally: cleanup_macsec()
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def conv1x1(in_planes: int, out_planes: int) -> nn.Conv2d: """1x1 convolution""" return nn.Conv2d(in_planes, out_planes, kernel_size=1, bias=True)
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def stop_session_safely(spark_session): """ Safely stops Spark session. This is no-op if running on Databricks - we shouldn't stop session there since it's managed by the platform, doing so fails the job. """ if not spark_session.conf.get("spark.home", "").startswith("/databricks"): spar...
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def test_no_mines_init(): """Asserts that initializing with no mines works properly""" size = (30, 50) ms_game = MinesweeperEnv(size, 0) assert size == ms_game.board_size assert ms_game.num_mines == 0 npt.assert_array_equal([], ms_game.hist) npt.assert_array_equal([[SPACE_UNKNOWN] * size[1]...
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def make_ratio_map(amap, bmap): """Get the ratio of two PISA 2 style maps (amap/bmap) and return as another PISA 2 style map.""" validate_maps(amap, bmap) with np.errstate(divide='ignore', invalid='ignore'): result = {'ebins': amap['ebins'], 'czbins': amap['czbins'], ...
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def _compose_duration( components_tags: Collection[Tags]) -> Mapping[str, Sequence[str]]: """Returns summed duration tags.""" duration_seconds_values = [ component_tags.one_or_none(DURATION_SECONDS) for component_tags in components_tags ] if duration_seconds_values and None not i...
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def test_process_aggregating_cubes_with_overlapping_frt( reliability_cube, overlapping_frt ): """Test that attempting to aggregate reliability calibration tables with overlapping forecast reference time bounds raises an exception. The presence of overlapping forecast reference time bounds indicates ...
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def feature_spatial(fslDir, tempDir, aromaDir, melIC): """ This function extracts the spatial feature scores. For each IC it determines the fraction of the mixture modeled thresholded Z-maps respecitvely located within the CSF or at the brain edges, using predefined standardized masks. Parameters ------------------...
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def p_translation_unit(p): """translation_unit : external_declaration | translation_unit external_declaration""" if len(p) == 2: p[0] = [p[1]] else: p[0] = p[1] + [p[2]]
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def str_to_date(date_str, fmt=DATE_STR_FMT): """Convert string date to datetime object.""" return datetime.datetime.strptime(date_str, fmt).date()
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def create_elasticsearch_domain(name, account_id, boto_session, lambda_role, cidr): """ Create Elastic Search Domain """ boto_elasticsearch = boto_session.client('es') total_time = 0 resource = "arn:aws:es:ap-southeast-2:{0}:domain/{1}/*".format(account_id, name) access_policy = {"Versio...
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def get_user(email): """ param: username returns User instance with user data, the MySQL error handle by the try-except senteces """ result = {} connection = _connect_to_db() try: with connection.cursor() as cursor: row_count = 0 e = 'none' # Read...
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def index(request): """ A example of Function-based view method: get request: None response: type: html """ return HttpResponse("Hello, world. You're at the polls index.")
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def make_https_request(logger, url, jobs_manager, download=False, timeout_attempt=0): """ Utility function for making HTTPs requests. """ try: req = requests_retry_session().get(url, timeout=120) req.raise_for_status() except requests.exceptions.ConnectionError as c_err: logg...
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async def _return_exported_sender(self: 'TelegramClient', sender): """ Returns a borrowed exported sender. If all borrows have been returned, the sender is cleanly disconnected. """ async with self._borrow_sender_lock: self._log[__name__].debug('Returning borrowed sender for dc_id %d', sende...
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def info(): """ Displays on the website of the page. @TODO - Add index.html for the site of Ubik. :return: response for each get request on '/'. """ return about_response()
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def falshsort(): """ Do from here: https://en.wikipedia.org/wiki/Flashsort :return: None """ return None
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def random_word(text, label, label_map, tokenizer, sel_prob): """ Masking some random tokens for Language Model task with probabilities as in the original BERT paper. :param tokens: list of str, tokenized sentence. :param tokenizer: Tokenizer, object used for tokenization (we need it's vocab here) :...
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def ITERATIVETEST_Error_Of_Input_Parameter_inZSubsample(): """Tests occurrence of an error because of an invalid input value provided at field "inZSubsample".""" Logging.infoHTML( "<b>ToDo: Add more \"TestData\" objects to maximize variations!</b>" ) testDataVariations = { "Invalid_Variation_1" : __getInvalid...
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def test_xclip_failure(): """Check that (mocked) failure raises an exception.""" with mock.patch('safe.clip.run') as run: run.return_value = 1, 'foo', 'bar' with pytest.raises(ClipboardError) as ei: Xclip().get() e = ei.value assert 'failed with stderr: bar' in str(e...
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def _match_storm_objects(first_prediction_dict, second_prediction_dict, top_match_dir_name): """Matches storm objects between first and second prediction files. F = number of storm objects in first prediction file :param first_prediction_dict: Dictionary returned by `predi...
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def get_default_branch(base_url: str, auth: Optional[AuthBase], ssl_verify: bool = True) -> dict: """Fetch a reference. :param base_url: base Nessie url :param auth: Authentication settings :param ssl_verify: ignore ssl errors if False :return: json Nessie branch """ return cast(dict, _get(...
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def make_source_thesaurus(source_thesaurus=SOURCE_THESAURUS_FILE): """ Get dict mapping country name to `SourceObject` for the country. Parameters ---------- source_thesaurus : str Filepath for the source thesaurus data. Returns ------- Dict of {"Country": SourceObject} pairs. """ with open(source_thesaur...
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def extract_filter(s): """Extracts a filter from str `s` Parameters ---------- s : str * A str that may or may not have a filter identified by ', that HUMAN VALUE' Returns ------- s : str * str `s` without the parsed_filter included parsed_filter : dict * filter...
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def sigmoid( x, sigmoid_type: str = "tanh", normalization_range: Tuple[Union[float, int], Union[float, int]] = (0, 1) ): """ A sigmoid function. From Wikipedia (https://en.wikipedia.org/wiki/Sigmoid_function): A sigmoid function is a mathematical function having a characteristic ...
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def test_get_nonexistent_public_key_fails(app, mock_get): """ Test that if there is no key found for the provided key id, a JWTValidationError is raised. """ mock_get() with pytest.raises(JWTError): get_public_key(kid="nonsense")
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def interp(x, x1, y1, x2, y2): """Find a point along a line""" return ((x2 - x) * y1 + (x - x1) * y2) / (x2 - x1)
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def msm_distance_measure_getter(X): """ generate the msm distance measure :param X: dataset to derive parameter ranges from :return: distance measure and parameter range dictionary """ n_dimensions = 1 # todo use other dimensions return { "distance_measure": [cython_wrapper(msm_dist...
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def gen_cpmfgp_test_data_from_config_file(config_file_name, raw_func, num_tr_data, num_te_data): """ Generates datasets for CP Multi-fidelity GP fitting. """ # Generate data def _generate_data(_proc_func, _config, _num_data): """ Generates data. """ ZX_proc = sample_from_config_space(_config, _num_data)...
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def csv_to_postgres(engine, file: str, table_name: str): """ Given a *.csv filepath, create a populated table in a database :param engine: SQLAlchemy connection/engine for the target database :param file: Full filepath of the *.csv file :param table_name: ...
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def keypair() -> None: """ KeyPair administration commands. """
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def find_best_ref_match_partial(trb: str, ref_df: pd.DataFrame): """ Find the row in the given reference df that best matches the given TRB ONLY """ raise NotImplementedError
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def _custom_padd(a, min_power_of_2=1024, min_zero_padd=50, zero_padd_ratio=0.5): """ Private helper to make a zeros-mirror-zeros padd to the next power of two of a. Parameters ---------- arrays : np.ndarray, array to padd. min_power_of_2 : int (default=512), mi...
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def encode_multipart_formdata(fields, files): """ Encode multipart data to be used in data import adapted from: http://code.activestate.com/recipes/146306/ :param fields: sequence of (name, value) elements for regular form fields. :param files: sequence of (name, filename, value) elements for data ...
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def is_recording(): """ return current state of recording key macro """ global recording return recording
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def test_reward_is_given(complete_mazeworld_states): """Make sure the total reward received for completing the maze is about what is expected (tests Interval) Args: complete_mazeworld_states:list of every state from finishing mazeworld """ total_reward = 0.0 for _, reward, _, _ in complete...
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def download_image_urls( urls_filename: Union[Path, str], synsets: List[str], max_concurrent: int = 50, rewrite: bool = False ) -> Dict[str, Optional[List[str]]]: """Downloads urls for each synset and saves them in json format in a given path. Args: urls_filename: a path to the file whe...
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def generate_new_split(lines1, lines2, rng, cutoff=14937): """Takes lines1 and lines2 and combines, shuffles and split again. Useful for working with random splits of data""" lines = [l for l in lines1] # lines1 may not be a list but rather iterable lines.extend(lines2) perm = rng.permutation(len(lines...
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def ProcessPeopleData(): """ 处理人物关系数据集 """ people_data_path = './People/origin/all_data.txt' processor = PeopleProcessor(people_data_path) processor.relation_counts() processor.data_cleaning() processor.data_formatting() processor.divide_datasets(do_dev=True, balance_sample=Fa...
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