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def person(request): """ Display information on the specified borrower (person) """ title = "Find a person" if 'person_id' in request.GET: person_id = request.GET['person_id'] try: person = Person.objects.get(id_number=person_id) title = unicode(person) ...
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def remove_routes_from_app(app_name: str, route_host: str, configuration: Configuration, secrets: Secrets, org_name: str = None, space_name: str = None): """ Remove routes from a given application. See https://apidocs.cloudfoundry.org/280/apps/remov...
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def _follow_word_from_node(node, word): """Follows the link with given word label from given node. If there is a link from ``node`` with the label ``word``, returns the end node and the log probabilities and transition IDs of the link. If there are null links in between, returns the sum of the log prob...
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def get_cbday(): """ クラバト日時確認用 bot本体では未使用 return ---- ``` None ``` """ cb_status=fetch_status() #cb_status = { # 'cb_start': datetime.strptime('2020/02/23 5:00:00', # '%Y/%m/%d %H:%M:%S'), # 'cb_end': datetime.strptime('2020...
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def normalize_code(code): """Normalize object codes to avoid duplicates.""" return slugify(code, allow_unicode=False).upper() if code else None
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def convert_raw_data_to_hdf5(trainIdx, validateIdx, fileIdx, filename, dataDir, json_data): """ Go through the Decathlon dataset.json file. We've already split into training and validation subsets. Read in Nifti format files. Crop images and masks. Save to HDF5 format. ...
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def get_weights_for_all(misfit_windows, stations, snr_threshold, cc_threshold, deltat_threshold, calculate_basic, print_info=True): """ get_weights_for_all: calculate weights. """ weights_for_all = {} # * firstly we update the weight of snr,cc,deltat for net_sta in misfit_windows: weigh...
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def tree_feature_importance(tree_model, X_train): """ Takes in a tree model and a df of training data and prints out a ranking of the most important features and a bar graph of the values Parameters ---------- tree_model: the trained model instance. Must have feature_importances_ and estima...
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def chhop_microseconds(delta: timedelta) -> timedelta: """ chop microseconds from timedelta object. :param delta: :return: """ return delta - timedelta(microseconds=delta.microseconds)
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def __renumber(dictionary) : """Renumber the values of the dictionary from 0 to n """ count = 0 ret = dictionary.copy() new_values = dict([]) for key in dictionary.keys() : value = dictionary[key] new_value = new_values.get(value, -1) if new_value == -1 : new_values[value] = count new_value = count ...
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def get_user_list(): """ return user list if the given authenticated user has admin permission :return: """ if requires_perm() is True: return jsonify({'user_list': USER_LIST, 'successful': True}), 200 return jsonify({'message': 'You are not ' ...
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def rm_words(user_input, stop_words): """Sanitize using intersection and list.remove()""" # Downsides: # - Looping over list while removing from it? # http://stackoverflow.com/questions/1207406/remove-items-from-a-list-while-iterating-in-python stop_words = set(stop_words) for sw in stop_...
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def getValueForCoordinate(inputFile, lon, lat, noDataAsNone): """ Reads the pixel value of a GeoTIFF for a geographic coordinate :param inputFile: full path to input GeoTIFF file :type inputFile: str :param lon: longitude :type lon: float :param lat: latitude :type lat: float :param...
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def convert_xrandr_to_index(xrandr_val: float): """ :param xrandr_val: usually comes from the config value directly, as a string (it's just the nature of directly retrieving information from a .ini file) :return: an index representation of the current brightness level, useful for switch...
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def test_get_secret_value_string_metadata_only(): """ Tests get secret value and the secret has string value. metadtaonly is set """ trace_factory.metadata_only = True client = boto3.client('secretsmanager', region_name='us-west-1') client.create_secret(Name=TEST_SECRET_NAME, SecretString=TEST_S...
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def get_message(name, value): """Provides the message for a standard Python exception""" if hasattr(value, "msg"): return f"{name}: {value.msg}\n" return f"{name}: {value}\n"
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def calculate_page_info(offset, total_students): """ Takes care of sanitizing the offset of current page also calculates offsets for next and previous page and information like total number of pages and current page number. :param offset: offset for database query :return: tuple consist of page num...
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def find_files(topdirs, py = False): """Lists all python files under any topdir from the topdirs lists. Returns an appropriate list for data_files, with source and destination directories the same""" ret = [] for topdir in topdirs: for r, _ds, fs in os.walk(topdir): re...
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def get_api_map(level,SYSTEM): """Search API from rules, if match the pattern then we said it is API.""" level_config = { #最高權限(但不包含APIDOC) "LEVEL1":r'/api/(?!APIDOC)', #只能看到通用系統api "LEVEL2":r'/api/<SYSTEM>', #只看得到APIDOC "LEVEL3":r'/api/APIDOC' } # regexSt...
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def _create_argument_parser(): """Creates the command line arg parser.""" parser = argparse.ArgumentParser(description='create a zip file', fromfile_prefix_chars='@') parser.add_argument('-o', '--output', type=str, help='The output zip file path.') parser...
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def download_office(load=True): # pragma: no cover """Download office dataset. Parameters ---------- load : bool, optional Load the dataset after downloading it when ``True``. Set this to ``False`` and only the filename will be returned. Returns ------- pyvista.Structured...
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def test_duplicated_topics(host): """ Check if can remove topics options """ # Given duplicated_topic_name = get_topic_name() def get_topic_config(): topic_configuration = topic_defaut_configuration.copy() topic_configuration.update({ 'name': duplicated_topic_name, ...
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def hazel_custom_package_hackage( package_name, version, sha256 = None, build_file = None, build_file_content = None): """Generate a repo for a Haskell package fetched from Hackage. Args: package_name: string, package name. version: string, package version. ...
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def register(request): """ 注册账号界面 """ message = "" if request.session.get('is_login', None): return redirect('/account/') if request.method == 'POST': username = request.POST.get('username') email = request.POST.get('email') password1 = request.POST.get('password...
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def asset_type_check(asset): """ Verify asset 'type' key abides by naming convention standards. Naming Convention Rules: - Asset Types are broken into three categories: <vendor>_<service>_<resource> - Example: aws_s3_bucket, gcp_iam_user, github_repository (service ommitted as there isn't any) ...
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def test_service_span(encoding): """Tests that zipkin_attrs can be passed in""" mock_transport_handler, mock_logs = mock_logger() zipkin_attrs = ZipkinAttrs( trace_id="0", span_id="1", parent_span_id="2", flags="0", is_sampled=True, ) with zipkin.zipkin_span( service_name="test_servi...
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def enter(ctx, work_dir) : """ Enters a running pde container. """ pCmd = "podman exec -it" if work_dir is not None : logging.info("Using the [{}] working directory".format(work_dir)) pCmd = pCmd + " --workdir {}".format(work_dir) pCmd = pCmd + " {} {}".format( ctx.obj['pdeName'], ctx.obj['pde']...
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def cosh(x): """Evaluates the hyperbolic cos of an interval""" np = import_module('numpy') if isinstance(x, (int, float)): return interval(np.cosh(x), np.cosh(x)) elif isinstance(x, interval): #both signs if x.start < 0 and x.end > 0: end = max(np.cosh(x.start...
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def tree_intersection(tree_one, tree_two): """Checks for duplicate values between two trees and returns those values as a set.""" first_values = [] second_values = [] table = HashTable() dupes = set([]) tree_one.pre_order(first_values.append) tree_two.pre_order(second_values.append) fo...
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def saveDataset(X_train, Y_train, X_test, Y_test, path): """ A function which saves numpy arrays of a dataset to binary files. """ np.save(os.path.join(path, "X_train.npy"), X_train) np.save(os.path.join(path, "Y_train.npy"), Y_train) np.save(os.path.join(path, "X_test.npy"), X_test) np.save...
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def new(): """Deliver new-question interface.""" return render_template('questionNew.html', question_id='')
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def merge_dict_recursive(base, other): """Merges the *other* dict into the *base* dict. If any value in other is itself a dict and the base also has a dict for the same key, merge these sub-dicts (and so on, recursively). >>> base = {'a': 1, 'b': {'c': 3}} >>> other = {'x': 4, 'b': {'y': 5}} >>> want =...
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def two_points_line(feature): """Convert a Polyline to a Line composed of only two points.""" features = [] coords = feature['geometry']['coordinates'] for i in range(0, len(coords) - 1): segment_coords = [coords[i], coords[i+1]] geom = geojson.LineString(segment_coords) features...
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def main(): """ Main runs the astroid lookup program """ astroid_map = [] with open(sys.argv[1]) as map_file: for line in map_file: astroid_map.append([x for x in line.strip()]) marked = mark_astroids(astroid_map) best = {"coordinates": (0, 0), "sees": 0} # Check ...
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def transform_world_to_camera(poses_set, cams, ncams=4): """ Project 3d poses from world coordinate to camera coordinate system Args poses_set: dictionary with 3d poses cams: dictionary with cameras ncams: number of cameras per subject Return: t3d_camera: dictionary with 3d poses...
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def generate_static(): """ Generate CSS and JavaScript files """ util.copytree('static', os.path.join(_deploy_dir, 'static'))
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def cwebp(input_image: str, output_image: str, option: str, logging: str = "-v", bin_path: str = None) -> Dict: """ now convert image to .webp format input_image: input image(.jpeg, .pnp ....) output_image: output image .webp option: options and quality,it should be given between 0 to 100...
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def assert_exists(exists, Model, **kwargs): """Check if given object exists or doesn't exist""" if Model.objects.filter(**kwargs).exists() != exists: raise AssertionError("Object with arguments {} {}!".format( kwargs, "doesn't exist" if exists else "exists" ))
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def dbRegister(app): """ 注册数据库 """ env = getEnv() app.config['MONGODB_SETTINGS'] = { 'db': configObj[env].DBNAME, 'host': configObj[env].DBHOST, 'port': configObj[env].DBPORT } db.init_app(app)
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def div66(): """ Returns the divider OOOOOOOOOOOO :return: divider66 """ return divider66
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def extract_square_from_file(image_number=1): """Given a number of the image file return a cropped sudoku.""" image_string = '/home/james/Documents/projects/sudoku/img/' image_string += str(image_number) + '.jpg' binary = read_binary(image_string) threshold = get_threshold(binary) square = get_...
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def CSV2GRID(strPathInCSV, strPathOutASC, intCol): """ Function CSV2GRID args: Command Syntax: CSV2GRID [switches] inputfile column outputfile """ lstCMD = [strPathFuInstall + os.sep + "CSV2GRID", strPathInCSV, str(intCol), strPathOutASC] ...
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def get_object_output(bucket: Optional[pulumi.Input[str]] = None, key: Optional[pulumi.Input[str]] = None, range: Optional[pulumi.Input[Optional[str]]] = None, tags: Optional[pulumi.Input[Optional[Mapping[str, str]]]] = None, versio...
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def sequence_extractor(graph, path): """ returns the sequence of the path :param graph: a graph object :param path: a list of nodes ordered according to the path :return: sequence of the path """ # check if path exists if len(path) == 1: return graph.nodes[path[0]].seq eli...
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def plot_matplotlib( tree: CassiopeiaTree, depth_key: Optional[str] = None, meta_data: Optional[List[str]] = None, allele_table: Optional[pd.DataFrame] = None, indel_colors: Optional[pd.DataFrame] = None, indel_priors: Optional[pd.DataFrame] = None, orient: Union[Literal["up", "down", "left"...
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def print_order(order: Order, user_id: int = 0): """ 订单打印 :param order: :param user_id: :return: """ shop_id = order.shop.id shop = get_shop_by_shop_id(shop_id) receipt_config = get_receipt_by_shop_id(shop_id) printer = ylyPrinter() template = jinja2.Template(ORDER_TPL_58) ...
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def get_IoU_from_matches(match_pred2gt, matched_classes, ovelaps): """ if given an image, claculate the IoU of the segments in the image :param match_pred2gt: maps index of predicted segment to index of ground truth segment :param matched_classes: maps index of predicted segment to class number :par...
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def check_audit_unchanged(results, platform): """Crash out if the audit in the result doesn't match the one in the platform""" from krun.audit import Audit if Audit(platform.audit) != results.audit: error_msg = ( "You have asked Krun to resume an interrupted benchmark. " ...
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def id_queue(obs_list, prediction_url='http://plants.deep.ifca.es/api', shuffle=False): """ Returns generator of identifications via buffer. Therefore we perform the identification query for the nxt observation while the user is still observing the current information. """ print "Generating the ...
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def periodogram(x, nfft=None, fs=1): """Compute the periodogram of the given signal, with the given fft size. Parameters ---------- x : array-like input signal nfft : int size of the fft to compute the periodogram. If None (default), the length of the signal is used. if nfft...
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def handle_429(e): """Renders full error page for too many site queries""" html = render.html("429") client_addr = get_ipaddr() count_ratelimit.labels(e, client_addr).inc() logger.error(f"Error: {e}, Source: {client_addr}") return html, 429
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def url_path_join(*items): """ Make it easier to build url path by joining every arguments with a '/' character. Args: items (list): Path elements """ return "/".join([item.lstrip("/").rstrip("/") for item in items])
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def f_match (pattern, string, flags = None): """ Match function Args: pattern (string): regexp (pattern|/pattern/flags) string (string): tested string flags (int): regexp flage Return: boolean """ if build_regexp(pattern, flags).search(to_strin...
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def validate_epoch(val_loader, model, criterion, epoch, args): """Perform validation on the validation set""" batch_time = AverageMeter() losses = AverageMeter() top1 = AverageMeter() batch_time = AverageMeter() data_time = AverageMeter() # switch to evaluate mode model.eval() end = time.time() b...
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def test_debugging_when_source_code_is_missing(): """Test debugging code that its source code is not available. Note: In this kind of code we cannot stop at an error, so we fall-back to simply running this code without interference. """ exec("def function(): 1 / 0", locals(), globals())...
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def printBoardStatistic(boardname, conn): """ Print Statistic for current board. """ c = conn.cursor() for i in c.execute('SELECT * FROM `boards` WHERE `name` IS ?', (boardname,)): break if i == None: raise Exception('SQL Query Failed! in printBoardStatistic()') print('name: ...
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def utf8_german_fix( uglystring ): """ If your string contains ugly characters (like ü, ö, ä or ß) in your source file, run this string through here. This adds the German "Umlaute" to your string, making (ÄÖÜäöü߀) compatible for processing. \tprint( utf8_german_fix("ü߀") ) == ü߀ """ ...
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def subtends(a1, b1, a2, b2, units='radians'): """ Calculate the angle subtended by 2 positions on a sphere """ if units.lower() == 'degrees': a1 = radians(a1) b1 = radians(b1) a2 = radians(a2) b2 = radians(b2) x1 = cos(a1) * cos(b1) y1 = sin(a1) * cos(b1) z1 = sin(...
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def get_pcgr_bin(): """Return abs path to e.g. conda/env/pcgr/bin """ return os.path.dirname(os.path.realpath(sys.executable))
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def test_response_data(): """Ensure response with expected data is returned.""" detail = 'Dummy detail' code = 'dummy_code' exception = rest_exceptions.APIException(detail=detail, code=code) response = handlers.handle_rest_framework_api_exception(exception, {}) assert code in str(response.data...
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async def test_update(opp, aioclient_mock): """Tests switch refreshes status periodically.""" now = dt_util.utcnow() future = now + timedelta(minutes=10) aioclient_mock.get( "http://1.1.1.1/status.xml", text="<response><relay0>0</relay0><relay1>0</relay1></response>", ) MockCon...
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def get_args(obj): """Get a list of argument names for a callable.""" if inspect.isfunction(obj): return inspect.getargspec(obj).args elif inspect.ismethod(obj): return inspect.getargspec(obj).args[1:] elif inspect.isclass(obj): return inspect.getargspec(obj.__init__).args[1:] ...
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def reset_cli(api_client, pipeline_id): """ Resets a delta pipeline by truncating tables and creating new checkpoint folders so data is reprocessed from scratch. Usage: databricks pipelines reset --pipeline-id 1234 """ _validate_pipeline_id(pipeline_id) PipelinesApi(api_client).reset(p...
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def write_feedback(section, messages, folder=os.getcwd()): """Append messages to the status file.""" filepath = os.path.join(folder, STATUS_FILE) with open(filepath) as stream: feedback = json.load(stream) if section not in feedback: feedback[section] = [] for message in messages...
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def get_assumed_role_creds(service_name, assume_role_policy): """ Returns a new assume role object with AccessID, SecretKey and SessionToken :param service_name: :param assume_role_policy: """ sts_client = boto3.client("sts", region_name=os.environ["AWS_REGION"]) assumed_role = sts_...
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def name_value(obj): """ Convert (key, value) pairs to HAR format. """ return [{"name": k, "value": v} for k, v in obj.items()]
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def get_ids(id_type): """Get unique article identifiers from the dataset. Parameters ---------- id_type : str Dataframe column name, e.g. 'pubmed_id', 'pmcid', 'doi'. Returns ------- list of str List of unique identifiers in the dataset, e.g. all unique PMCIDs. """ ...
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def ccw_wkt_from_shapefile(shapefile, out_txt): """ Creates wkt with coordinates oriented counter clockwise for a given shapefile. Shapefiles are oriented clockwise, which is incompatible with spatial queries in many database management systems. Use this to generate wkt that you can copy and paste ...
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def get_items_info(request): """Get a collection of person objects""" result = request.dbsession.query(Item).all() results=[] for c in result: results.append({'id':c.id, 'markup':c.markup}) return results
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def test_UniformTimeSeries_repr(): """ >>> t=ts.UniformTime(length=3,sampling_rate=3) >>> tseries1 = ts.UniformTimeSeries(data=[3,5,8],time=t) >>> t.sampling_rate 3.0 Hz >>> tseries1.sampling_rate 3.0 Hz >>> tseries1 = ts.UniformTimeSeries(data=[3,5,8],sampling_rate=3) >>> tseries1....
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def _test(value, *args, **keywargs): """ A function that exists for test purposes. >>> checks = [ ... '3, 6, min=1, max=3, test=list(a, b, c)', ... '3', ... '3, 6', ... '3,', ... 'min=1, test="a b c"', ... 'min=5, test="a, b, c"', ... 'min=1, max=...
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def plot_chromaticity_diagram_CIE1976UCS( cmfs: Union[ MultiSpectralDistributions, str, Sequence[Union[MultiSpectralDistributions, str]], ] = "CIE 1931 2 Degree Standard Observer", show_diagram_colours: Boolean = True, show_spectral_locus: Boolean = True, **kwargs: Any, ) -> ...
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def generateFilter(targetType, left = False): """Generate filter function for loaded plugins""" def filter(plugins): for pi in plugins: if left: if not pi.isThisType(targetType): plugins.remove(pi) logger.info("Plugin: {} is filtered out by predefined filter"\ .format(pi.namePlugin())) ...
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def test__prod__homolytic_scission(): """ test graph.reac.prod_homolytic_scission """ gra = automol.geom.graph( automol.inchi.geometry( automol.smiles.inchi('CCCC'))) prod_gras = graph.reac.prod_homolytic_scission(gra) print('\n homolyt scission') for gra in prod_gras: ...
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def test_search_no_results(session, search_type, json_data): """Assert that a search query with no results returns the expected result.""" query = SearchRequest.create_from_json(json_data, None) query.search() assert query.id assert not query.search_response assert query.returned_results_size =...
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def test_compare_full_flash_hex( mock_open_temp_html, mock_gen_diff_html, mock_read_flash_hex ): """Check that file contents.""" file_hex_path = os.path.join("path", "to", "file.hex") file_hex_content = "This is the hex file content" flash_hex_content = "This is the flash hex content" mock_read_...
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def load_vel_map(component="u"): """ Loads all mean streamwise velocity profiles. Returns a `DataFrame` with `z_H` as the index and `y_R` as columns. """ # Define columns in set raw data file columns = dict(u=1, v=2, w=3) sets_dir = os.path.join("postProcessing", "sets") latest_time = ma...
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def iterate_packages(rospack, mode): """ Iterator for packages that contain messages/services :param mode: .msg or .srv, ``str`` """ if mode == MODE_MSG: subdir = 'msg' elif mode == MODE_SRV: subdir = 'srv' else: raise ValueError('Unknown mode for iterate_packages: %s...
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def check_int(es_url, es_index, hash_id): """Query for interferograms with specified input hash ID.""" query = { "query":{ "bool":{ "must":[ {"term":{"metadata.input_hash_id":hash_id}}, ] } } } if es_url.endswi...
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def format_sample_case(s: str) -> str: """format_sample_case convert a string s to a good form as a sample case. A good form means that, it use LR instead of CRLF, it has the trailing newline, and it has no superfluous whitespaces. """ if not s.strip(): return '' lines = s.strip().splitlin...
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def replace_floats_with_decimals(obj: Any, round_digits: int = 9) -> Any: """Convert all instances in `obj` of `float` to `Decimal`. Args: obj: Input object. round_digits: Rounding precision of `Decimal` values. Returns: Input `obj` with all `float` types replaced by `Decimal`s rou...
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def _calc_range_mixed_data_columns(data, observation, dtypes): """ Return range for each numeric column, 0 for categorical variables """ _, cols = data.shape result = np.zeros(cols) for col in range(cols): if np.issubdtype(dtypes[col], np.number): result[col] = max(max(data[:, col])...
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def get_from_hdfs(file_hdfs): """ compatible to HDFS path or local path """ if file_hdfs.startswith('hdfs'): file_local = os.path.split(file_hdfs)[-1] if os.path.exists(file_local): print(f"rm existing {file_local}") os.system(f"rm {file_local}") hcopy(f...
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def search(request): """ Display search form/results for events (using distance-based search). Template: events/search.html Context: form - ``anthill.events.forms.SearchForm`` event_list - events in the near future searched - True/Fal...
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def logout() -> Response: """Logout route. Logs the current user out. :return: A redirect to the landing page. """ name: str = current_user.name logout_user() flash(f'User "{name}" logged out.', 'info') url: str = url_for('root') output: Response = redirect(url) return output
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def load_room(name): """ There is a potential security problem here. Who gets to set name? Can that expose a variable? """ return globals().get(name)
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def call_ipt_func(ipt_id: str, function_name: str, source, **kwargs): """Processes an image/wrapper with an IPT using an function like syntax :param ipt_id: :param function_name: :param source: :param kwargs: :return: """ cls_ = get_ipt_class(ipt_id) if cls_ is not None: ...
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def is_running(service): """ Checks if service is running using sysdmanager library. :param service: Service to be checked. :return: Information if service is running or not. """ manager = get_manager() if manager.is_active(service + ".service"): return 1 return 0
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def pipeline_model(model, pipeline_splits): """ Split the model into stages. """ for name, modules in model.named_modules(): name = name.replace('.', '/') if name in pipeline_splits: logging.info('--------') logging.info(name) for split_idx, split in enumerate(pi...
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async def setstatus(ctx, status: Option(str, "Set status", choices=["online", "idle", "dnd"])): """Change Dalti's status""" try: if status == "online": await Dalti.change_presence(status=discord.Status.online) Embed = discord.Embed(description=f"<:daltiSuccess:923699355779731476>...
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def smoothen(data, kernel): """Convolve data with odd-size kernel, with boundary handling.""" n, = kernel.shape assert n % 2 == 1 m = (n-1) // 2 # pad input data k = m//2 + 1 data_padded = np.concatenate([ np.full(m, data[:k].mean()), data, np.full(m, data[-k:].mean(...
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def find_node_name(node_id, g): """Go through the attributes and find the node with the given name""" return g.node[node_id]["label"]
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def aes_cbc_decrypt(data, key, iv): """ Decrypt with aes in CBC mode @param {int[]} data cipher @param {int[]} key 16/24/32-Byte cipher key @param {int[]} iv 16-Byte IV @returns {int[]} decrypted data """ expanded_key = key_expansion(key) block_coun...
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def score_concepts(merged_graph: AMR, counts: tuple, concept_alignments: Dict[str, str]) -> Counter: """ Calculate TF-IDF counts for each node(concept) in `merged_graph` according to their aligned words. Parameters: merged_graph(AMR): Graph which contains the concept to be scored. counts(tu...
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def test_apply_bda_pre_fs_int_time_bad_quantity_error(): """Test error for using an incompatible Quantity for pre_fs_int_time.""" # define parameters uvd = UVData() max_decorr = 0.1 pre_fs_int_time = 0.1 * units.m corr_fov_angle = Angle(20.0, units.degree) max_time = 30 * units.s corr_in...
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def test_newline_002(settings, sass_parser): """ Ensure nothing after import newline is wrongly captured """ content = ( """// Foo\n""" """@import candidate1\n""" """@import candidate2\n""" """.foo{ color: red }""" ) result = sass_parser.parse(content) assert ...
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def timestamp_to_double(sparkdf): """ Utility function to cast columns of type 'timestamp' to type 'double.' """ for dtype in sparkdf.dtypes: if dtype[1] == 'timestamp': sparkdf = sparkdf.withColumn(dtype[0], col(dtype[0]).cast(DoubleType())) return sparkdf
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def get_signal(args): """function to get signal from a track around some sites """ if not args.out: args.out = '.'.join(os.path.basename(args.bed).split('.')[0:-1]) chunks = ChunkList.read(args.bed, strand_col = args.strand) params = _signalParams(args.bg, args.sizes, args.up, args.down,arg...
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def get_entrez_id_from_organism_full_name_batch(organism_full_names: List[str]) -> List[str]: """Retrieves the Entrez numeric ID of the given organisms. This numeric identifier is neccessary for BLAST and NCBI TAXONOMY searches. This function uses Biopython functions. Returns BLAST-compatible ID as ...
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def test_wrong_msgcat(po_file): """Test if msgcat is not available""" environ_saved = os.environ["PATH"] os.environ["PATH"] = "" with pytest.raises(SystemExit) as sysexit: powrap.check_style([po_file]) os.environ["PATH"] = environ_saved assert sysexit.type == SystemExit assert sysexi...
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