content stringlengths 22 815k | id int64 0 4.91M |
|---|---|
def get_table_from_alter_table(line, alter_expr):
"""
Parse the content and return full qualified schema.table from the line if
schema provided, else return the table name.
Fact: if schema name or table name contains any special chars, each should be
double quoted already in dump file.
"""
... | 30,500 |
def read_and_setup_bs(request):
"""
This routine reads the parameter files, sets up
the lattice and calculates or reads in the bandstructure
Parameters
----------
test_number : int
The test number, e.g. the folder under the tests
folder.
Returns
-------
bs : object
... | 30,501 |
def bind_port(socket, ip, port):
""" Binds the specified ZMQ socket. If the port is zero, a random port is
chosen. Returns the port that was bound.
"""
connection = 'tcp://%s' % ip
if port <= 0:
port = socket.bind_to_random_port(connection)
else:
connection += ':%i' % port
... | 30,502 |
def eval_once(saver, summary_writer, ler, summary_op):
"""Run Eval once.
Args:
saver: Saver.
summary_writer: Summary writer.
ler: Top K op.
summary_op: Summary op.
"""
with tf.Session() as sess:
ckpt = tf.train.get_checkpoint_state(FLAGS.checkpoint_dir)
if ckpt... | 30,503 |
def update_target_graph(actor_tvars, target_tvars, tau):
""" Updates the variables of the target graph using the variable values from the actor, following the DDQN update
equation. """
op_holder = list()
# .assign() is performed on target graph variables with discounted actor graph variable values
f... | 30,504 |
def safe(function: Callable[..., T]) -> Callable[..., Result[T, Exception]]:
"""Wraps a function that may raise an exception.
e.g.:
@safe
def bad() -> int:
raise Exception("oops")
"""
def wrapped(*args, **kwargs) -> Result[T, Exception]:
try:
return Ok(... | 30,505 |
def test_load_labels_data_include_missing_labels_as_false():
""" Test the load_labels_data function by checking whether the query
produces the correct labels
"""
# set up labeling config variables
dates = [
datetime.datetime(2016, 1, 1, 0, 0),
datetime.datetime(2016, 2, 1, 0, 0),
... | 30,506 |
def strtime(millsec, form="%i:%02i:%06.3f"):
"""
Time formating function
Args:
millsec(int): Number of milliseconds to format
Returns:
(string)Formated string
"""
fc = form.count("%")
days, milliseconds = divmod(millsec, 86400000)
hours, milliseconds = divmod(millsec, 3... | 30,507 |
def parallel_categories():
"""Parallel Categories Plot."""
mean_neighborhood_sfo = sfo_data.groupby(["neighborhood"]).mean()
mean_sale_price_sfo = mean_neighborhood_sfo.sort_values("sale_price_sqr_foot", ascending=False)
sfo = mean_sale_price_sfo.head(10)
a = sfo.reset_index()
parallel_categorie... | 30,508 |
def hessian_filter(img: Image, scales: list, dimension: int = 0,
scaled_to_eval=False, normalized=False, parallel=False) -> Image:
"""Applies a (multi-scale) hessian-like filtering operation on a 3D stack.
Transforms an image to an input image where each pixel represents an object-ness measu... | 30,509 |
def close_project(id_, **kwargs):
"""Close a project
:param id_: The ID of the project object to be updated
:type id_: str
:rtype: ProjectSerializer
"""
proj = get_project_object(id_)
check_project_permission(proj, kwargs["token_info"])
if proj.owner != kwargs["user"]:
raise con... | 30,510 |
def inspect_download_url(input_path, args, facts):
"""Process a direct download URL
Gather information required to create a recipe.
Args:
input_path: The path or URL that Recipe Robot was asked to use
to create recipes.
args: The command line arguments.
facts: A continu... | 30,511 |
def min_cycle_ratio(G: nx.Graph, dist):
"""[summary] todo: parameterize cost and time
Arguments:
G ([type]): [description]
Returns:
[type]: [description]
"""
mu = 'cost'
sigma = 'time'
set_default(G, mu, 1)
set_default(G, sigma, 1)
T = type(dist[next(it... | 30,512 |
def int2base(x, base):
"""
Method to convert an int to a base
Source: http://stackoverflow.com/questions/2267362
"""
import string
digs = string.digits + string.ascii_uppercase
if x < 0: sign = -1
elif x == 0: return digs[0]
else:
sign = 1
x *= sign
digits = ... | 30,513 |
def geometric(X):
"""
If x1,x2,...xn ~iid~ GEO(p) then the MLE is 1 / X-bar
Parameters
----------
X : array_like
Returns:
----------
geo_mle : MLE calculation for p-hat for GEO(p)
References
----------
[1] Casella, G., Berger, R. L., "Statistical Infe... | 30,514 |
def parse_args():
"""Parse input arguments."""
parser = argparse.ArgumentParser(description='Run train or eval scripts for Gated2Depth')
parser.add_argument("--base_dir", help="Path to dataset", required=True)
parser.add_argument("--train_files_path", help="Path to file with train file names", require... | 30,515 |
def test_bad_colours_set():
""" Validating that the BadColoursSetError exception is raised when required
"""
mastermind = MastermindCore()
with pytest.raises(BadColoursSetError):
mastermind.configure(
code_length = 4,
allow_duplicates = False,
colours_set = ['... | 30,516 |
def calc_dH(
e_per_atom,
stoich=None,
num_H_atoms=0,
):
"""
The original method is located in:
F:\Dropbox\01_norskov\00_git_repos\PROJ_IrOx_Active_Learning_OER\data\proj_data_irox.py
Based on a E_DFT/atom of -7.047516 for rutile-IrO2
See the following dir for derivation:
PR... | 30,517 |
def store_policy_instance(policy_type_id, policy_instance_id, instance):
"""
Store a policy instance
"""
type_is_valid(policy_type_id)
key = _generate_instance_key(policy_type_id, policy_instance_id)
if SDL.get(key) is not None:
# Reset the statuses because this is a new policy instance,... | 30,518 |
def _make_asset_build_reqs(asset):
"""
Prepare requirements and inputs lists and display it
:params str asset: name of the asset
"""
def _format_reqs(req_list):
"""
:param list[dict] req_list:
:return list[str]:
"""
templ = "\t{} ({})"
return [templ.... | 30,519 |
def gsl_eigen_herm_alloc(*args, **kwargs):
"""gsl_eigen_herm_alloc(size_t const n) -> gsl_eigen_herm_workspace"""
return _gslwrap.gsl_eigen_herm_alloc(*args, **kwargs) | 30,520 |
def cosine_similarity(array1, array2):
"""
Calcula la similitud coseno entre dos arrays
"""
# -sum(l2_norm(y_true) * l2_norm(y_pred))
return -dot(array1, array2)/(norm(array1)*norm(array2)) | 30,521 |
def DEW_T(Y, P, all_params):
"""
Y = list of mollar fractions of vapor like [0.2 ,0.8] or [0.1 0.2 0.7]
Sumation of X list must be 1.0
P = Pressure in kPa
all_params = list of parameters for Antonie equations
example for all params:
all_params = [[A1, B1, C1],
... | 30,522 |
def plugin_last():
"""This function should sort after other plug-in functions"""
return "last" | 30,523 |
def init_seg_table(metadata, tablename, segid_colname=cn.seg_id, chunked=True):
""" Specifies a table for tracking info about a segment. """
columns = [Column("id", BigInteger, primary_key=True),
Column(cn.seg_id, Integer, index=True),
Column(cn.size, Integer),
# Cen... | 30,524 |
def extract_shebang_command(handle):
"""
Extract the shebang_ command line from an executable script.
:param handle: A file-like object (assumed to contain an executable).
:returns: The command in the shebang_ line (a string).
The seek position is expected to be at the start of the file and will b... | 30,525 |
def set_resource_limit(limit, soft=None, hard=None, warn_on_failure=False):
"""Uses the ``resource`` package to change a resource limit for the current
process.
If the ``resource`` package cannot be imported, this command does nothing.
Args:
limit: the name of the resource to limit. Must be th... | 30,526 |
def split_abstracts(ftm_df):
"""
Split the mail abstract (item content) into different mails.
This is required to find the 'novel' email, and the rest of the threat. We
create a new row for each email in the threat, but it keeps the ID of the
'novel email'. We add two boolean flags for is_novel, an... | 30,527 |
def merge(xref):
""" Do some logic here to clean things up!"""
pgconn = get_dbconn('mesosite', user='mesonet')
ipgconn = get_dbconn('iem', user='mesonet')
for nwsli, name in xref.iteritems():
cursor = pgconn.cursor()
rwcursor = pgconn.cursor()
icursor = ipgconn.cursor()
n... | 30,528 |
def get_weight_from_alias(blend_shape, alias):
"""
Given a blend shape node and an aliased weight attribute, return the index in .weight to the
alias.
"""
# aliasAttr lets us get the alias from an attribute, but it doesn't let us get the attribute
# from the alias.
existing_indexes = blend_s... | 30,529 |
def __check_dependences_and_predecessors(pet: PETGraphX, out_dep_edges: List[Tuple[Any, Any, Any]],
parent_task: CUNode, cur_cu: CUNode):
"""Checks if only dependences to self, parent omittable node or path to target task exists.
Checks if node is a direct successor of a... | 30,530 |
def clone_master_track(obj, stdata, stindex, stduration):
"""
ghetto-clone ('deep copy') an object using JSON
populate subtrack info from CUE sheet
"""
newsong = json.loads(json.dumps(obj))
newsong['subsong'] = {'index': stindex, 'start_time': stdata['index'][1][0], 'duration': stduration}
n... | 30,531 |
def create_graph(num_islands, bridge_config):
"""
Helper function to create graph using adjacency list implementation
"""
adjacency_list = [list() for _ in range(num_islands + 1)]
for config in bridge_config:
source = config[0]
destination = config[1]
cost = config[2]
... | 30,532 |
def distinct_extractors(count=True, active=True):
""" Tool to count unique number of predictors for each Dataset/Task """
active_datasets = ms.Dataset.query.filter_by(active=active)
superset = set([v for (v, ) in ms.Predictor.query.filter_by(active=True).filter(
ms.Predictor.dataset_id.in_(
... | 30,533 |
def get_timepoint( data, tp=0 ):
"""Returns the timepoint (3D data volume, lowest is 0) from 4D input.
You can save memory by using [1]:
nifti.dataobj[..., tp]
instead: see get_nifti_timepoint()
Works with loop_and_save().
Call directly, or with niftify().
Ref:
[1]: http:/... | 30,534 |
def method_from_name(klass, method_name: str):
"""
Given an imported class, return the given method pointer.
:param klass: An imported class containing the method.
:param method_name: The method name to find.
:return: The method pointer
"""
try:
return getattr(klass, method_name)
... | 30,535 |
def create_config_file(config_path=CONFIG_FILE_PATH):
"""
generate a generic config file from a given path
:param config_path:
:return:
"""
if os.path.exists(config_path):
logging.warning("the file config.txt already exits, it will not be overwritten")
else:
of = open(config_... | 30,536 |
def get_querypage(site: Site, page: str, limit: int = 500):
"""
:type site Site
:type page str
:type limit int
:rtype: list[str]
"""
# http://poznan.wikia.com/api.php?action=query&list=querypage&qppage=Nonportableinfoboxes
# http://poznan.wikia.com/api.php?action=query&list=querypage&qpp... | 30,537 |
def parse_value(string: str) -> str:
"""Check if value is a normal string or an arrow function
Args:
string (str): Value
Returns:
str: Value if it's normal string else Function Content
"""
content, success = re.subn(r'^\(\s*\)\s*=>\s*{(.*)}$', r'\1', string)
if not success:
... | 30,538 |
def test_arrowleft_shortchut(vim_bot):
"""Test j command (Cursor moves right)."""
main, editor_stack, editor, vim, qtbot = vim_bot
editor.stdkey_backspace()
qtbot.keyPress(editor, Qt.Key_Right)
cmd_line = vim.get_focus_widget()
_, col = editor.get_cursor_line_column()
qtbot.keyPress(editor, ... | 30,539 |
def uniqify(seq, idfun=None):
"""Return only unique values in a sequence"""
# order preserving
if idfun is None:
def idfun(x):
return x
seen = {}
result = []
for item in seq:
marker = idfun(item)
if marker in seen:
continue
... | 30,540 |
def inside(Sv, r, r0, r1):
"""
Mask data inside a given range.
Args:
Sv (float): 2D array with data to be masked.
r (float): 1D array with range data.
r0 (int): Upper range limit.
r1 (int): Lower range limit.
Returns:
bool... | 30,541 |
def file_exists(fpath: str):
"""Checks if file exists by the given path
:param str fpath:
A path to validate for being a file
:returns:
True, if fpath is a file
False, if fpath doesn't exists or isn't a file
"""
return os.path.isfile(fpath) | 30,542 |
def get_solution_name(
fs: float, tf_name: str, tf_var: str, postfix: Optional[str] = None
) -> str:
"""Get the name of a solution file"""
from resistics.common import fs_to_string
solution_name = f"{fs_to_string(fs)}_{tf_name.lower()}"
if tf_var != "":
tf_var = tf_var.replace(" ", "_")
... | 30,543 |
def test_client_arm(server, client):
"""Should call the API and arm the system."""
html = """[
{
"Poller": {"Poller": 1, "Panel": 1},
"CommandId": 5,
"Successful": True,
}
]"""
server.add(
responses.POST,
"https://example.com/api/panel/... | 30,544 |
def test_get_filename_from_request(patch_url_handler):
"""Test getting the filename of an url from a request object."""
# url with no filename in name, but in request content headers
request = urlopen("http://valid.com")
filename = packagerbuddy._get_filename_from_request(request)
assert filename ==... | 30,545 |
def escape(message: str) -> str:
"""Escape tags which might be interpreted by the theme tokenizer.
Should be used when passing text from external sources to `theme.echo`.
"""
return re.sub(
rf"<(/?{TAG_RE})>",
r"\<\1>",
message,
) | 30,546 |
def display_notebook(host, port, display):
"""Display Aim instance in an ipython context output frame.
"""
import IPython.display
shell = """
<iframe id="aim" width="100%" height="800" frameborder="0" src={}:{}{}>
</iframe>
""".format(host, port, '/notebook/')
# @TODO wr... | 30,547 |
async def normalize_message(app: FastAPI, message: Message) -> Message:
"""
Given a TRAPI message, updates the message to include a
normalized qgraph, kgraph, and results
"""
try:
merged_qgraph = await normalize_qgraph(app, message.query_graph)
merged_kgraph, node_id_map, edge_id_map... | 30,548 |
def ec_elgamal_encrypt(msg, pk, symmalg):
"""
Computes a random b, derives a key from b*g and ab*g, then encrypts it using symmalg.
Input:
msg Plaintext message string.
pk Public key: a tuple (EC, ECPt, ECPt), that is (ec, generator g, a*g)
symmalg A callable th... | 30,549 |
def plot_confusion_matrix(cm, classes,
normalize=False,
cmap=plt.cm.YlGnBu):
"""
This function prints and plots the confusion matrix.
Normalization can be applied by setting `normalize=True`.
"""
np.set_printoptions(precision=2)
fig, ax = plt.s... | 30,550 |
def meshgrid(params):
"""Returns meshgrid X that can be used for 1D plotting.
params is what is returned by finess.params.util.read_params."""
assert(params['finess', 'ndims'] == 1)
mx = params['grid', 'mx']
xlow = params['grid', 'xlow']
xhigh = params['grid', 'xhigh']
dx = (xhigh-x... | 30,551 |
def _pbe_p12(params, passphrase, hash_alg, cipher, key_size):
"""PKCS#12 cipher selection function for password-based encryption
This function implements the PKCS#12 algorithm for password-based
encryption. It returns a cipher object which can be used to encrypt
or decrypt data based on the sp... | 30,552 |
def add_settings_routes(app):
""" Create routes related to settings """
@app.route('/v1/rule_settings/', methods=['GET'])
@requires_login
@use_kwargs({
'agency_code': webargs_fields.String(required=True),
'file': webargs_fields.String(validate=webargs_validate.
... | 30,553 |
def delete_by_date_paste(date):
"""
Deletes the paste entries older than a certain date. Note that it will delete any document/index type entered into
it for elasticsearch, the paste restriction is due to postgreql
:return: True once
"""
# Create a connection to the database (seemd to want it i... | 30,554 |
def add_user_to_ldap_and_login(self, server, user=None, ch_user=None, login=None, exitcode=None, message=None, rbac=False):
"""Add user to LDAP and ClickHouse and then try to login.
"""
self.context.ldap_node = self.context.cluster.node(server)
if ch_user is None:
ch_user = {}
if login is N... | 30,555 |
def is_venv():
"""Check whether if this workspace is a virtualenv.
"""
dir_path = os.path.dirname(SRC)
is_venv_flag = True
if SYS_NAME == "Windows":
executable_list = ["activate", "pip.exe", "python.exe"]
elif SYS_NAME in ["Darwin", "Linux"]:
executable_list = ["activate", "pip"... | 30,556 |
def convert(origDict, initialSpecies):
"""
Convert the original dictionary with species labels as keys
into a new dictionary with species objects as keys,
using the given dictionary of species.
"""
new_dict = {}
for label, value in origDict.items():
new_dict[initialSpecies[label]] =... | 30,557 |
def Vector(point, direction, simple=None):
"""
Easy to use Vector type constructor. If three arguments are passed,
the first two are the x components of the point and the third is
the direction component of the Vector.
"""
if simple is not None:
point = Point(point, direction)
di... | 30,558 |
def check_runner(event, context):
"""
Pure lambda function to pull run and check information from SQS and run
the checks. Self propogates. event is a dict of information passed into
the lambda at invocation time.
"""
if not event:
return
app_utils_obj.run_check_runner(event) | 30,559 |
def createGrid(nx, ny):
"""
Create a grid position array.
"""
direction = 0
positions = []
if (nx > 1) or (ny > 1):
half_x = int(nx/2)
half_y = int(ny/2)
for i in range(-half_y, half_y+1):
for j in range(-half_x, half_x+1):
if not ((i==0) and (... | 30,560 |
def print_gradient(texto,grad):
"""
Impressão do Gradiente.
Utilizado para Gradiente de Suporte ou de Confiança
conforme a faixa em que ele se encontra.
:param: grad: vetor de Gradiente que será alterado
:param: val: valor atual que será contabilizado no vetor de Gradiente
"""
print('{:... | 30,561 |
def _update_distances_for_one_sample(
sample_index, new_distances, all_distances, sample_name_to_index
):
"""Updates all distance data in dictionary all_distances.
new_distances=list of tuples, made by _load_one_sample_distances_file"""
for other_sample, distance in new_distances:
other_index = ... | 30,562 |
def pay(name):
"""Pay participants"""
# Skip if performing local development
if reseval.is_local(name):
return
# Get config
config = reseval.load.config_by_name(name)
# Get credentials
credentials = reseval.load.credentials_by_name(name, 'crowdsource')
# Pay participants
m... | 30,563 |
def get_private_network(filters: Optional[Sequence[pulumi.InputType['GetPrivateNetworkFilterArgs']]] = None,
opts: Optional[pulumi.InvokeOptions] = None) -> AwaitableGetPrivateNetworkResult:
"""
Get information about a Vultr private network.
## Example Usage
Get the information... | 30,564 |
def test_cell_order_2d():
"""Test for 6 cells in 2d"""
cell_order_reference = [[1, 3, 4], [2, 3, 4, 5], [4, 5], [4], [5], []]
cell_order = create_cell_order_2d(1, [3, 2])
npt.assert_array_equal(cell_order_reference, cell_order) | 30,565 |
def bootstrap(tank, context):
"""
Interface for older versions of tk-multi-launchapp.
This is deprecated and now replaced with the ``startup.py`` file and
``SoftwareLauncher`` interface.
Prepares the environment for a tk-houdini bootstrap. This method is
called directly from the tk-multi-launc... | 30,566 |
def make1():
""" делаем простой документ, но уже с разметкой.
это helloworld.docx
"""
doc = docx.Document()
# добавляем первый параграф
doc.add_paragraph('Здравствуй, мир!')
# добавляем еще два параграфа
par1 = doc.add_paragraph('Это второй абзац.')
par2 = doc.add_paragraph('Это ... | 30,567 |
def sdc_pandas_series_operator_le(self, other):
"""
Pandas Series operator :attr:`pandas.Series.le` implementation
.. only:: developer
**Test**: python -m sdc.runtests -k sdc.tests.test_series.TestSeries.test_series_op7*
python -m sdc.runtests -k sdc.tests.test_series.TestSeries.test_ser... | 30,568 |
def getArrFromFile(path = fromPath):
"""
读取原始csv文件，返回numpy数组
:param
path: 原始csv文件路径 string类型 default:fromPath
:return:
X: 由原始文件生成的数组 二维numpy数组类型
"""
X = numpy.genfromtxt(path,dtype=float,delimiter=',')[1:,:-2]
return X | 30,569 |
def erode(binary_image, erosion=1):
"""
Sets 1s at boundaries of binary_image to 0
"""
batch_array = binary_image.data.cpu().numpy()
return torch.tensor(
np.stack([
binary_erosion(
array,
iterations=erosion,
border_value=1, # so th... | 30,570 |
def plot_chirpam_fit(cell_mean, param_d, QI=None, fit_f=sinexp_sigm,
start=420, stop=960, ax=None):
"""
Helper function to visualize the fit of a cell response to a chirp_am stimulus.
params:
- cell_mean: Cell's mean response to the stimulus
- param_d: Parameter diction... | 30,571 |
def convert2SQUAD_format(hoppy_data, write_file_name):
"""
Converts QAngaroo data (hoppy_data) into SQuAD format.
The SQuAD-formatted data is written to disk at write_file_name.
Note: All given support documents per example are concatenated
into one super-document. All text is lowercased.
""... | 30,572 |
def command_ltc(bot, user, channel, args):
"""Display current LRC exchange rates from BTC-E"""
r = bot.get_url("https://btc-e.com/api/2/ltc_usd/ticker")
j = r.json()['ticker']
return bot.say(channel, "BTC-E: avg:$%s last:$%s low:$%s high:$%s vol:%s" % (j['avg'], j['last'], j['low'], j['high'], j['vol']... | 30,573 |
def new_match(request, cmd_args):
"""
Return a slack message with a link to a new match
"""
# Could potentially add arguments to allow game configuration here
serializer = LiveMatchSerializer(data={"config": cmd_args})
if serializer.is_valid():
live_match = serializer.save()
re... | 30,574 |
def abort(container_dir, why=None, payload=None):
"""Abort a running application.
Called when some initialization failed in a running container.
"""
flag_aborted(container_dir, why, payload)
container_dir = os.path.realpath(os.path.join(container_dir, '../'))
supervisor.control_service(containe... | 30,575 |
def head(feats, anchors, num_classes):
"""Convert final layer features to bounding box parameters.
Parameters
----------
feats : tensor
Final convolutional layer features.
anchors : array-like
Anchor box widths and heights.
num_classes : int
Number of target classes.
... | 30,576 |
def socfaker_azurevmtopology_get():
"""
None
"""
if validate_request(request):
return jsonify(str(socfaker.products.azure.vm.topology)) | 30,577 |
def read_json_file(filename):
"""Load json object from a file."""
with open(filename, 'r') as f:
content = json.load(f)
return content | 30,578 |
def createVectorisedTargValObjFunction(functTypeStr:str, averageMethod="mean",catchOverflow=True, errorRetVal=1e30, normToErrorRetVal=False, greaterThanIsOk=False, lessThanIsOk=False, useAbsVals=False,
divideErrorsByNormFactor=None):
""" Creates a comparison function that operators on (iterA,iterB) and returns a singl... | 30,579 |
def get_nonoverlap_ra_dataset_conf(dataset_conf):
"""extract segments by shifting segment length"""
if dataset_conf["if_rand"]:
info("disabled dataset_conf if_rand")
dataset_conf["if_rand"] = False
if dataset_conf["seg_rand"]:
info("disabled dataset_conf seg_rand")
dataset_co... | 30,580 |
def _f_model_snaive_wday(a_x, a_date, params, is_mult=False, df_actuals=None):
"""Naive model - takes last valid weekly sample"""
if df_actuals is None:
raise ValueError('model_snaive_wday requires a df_actuals argument')
# df_actuals_model - table with actuals samples,
# adding y_out column w... | 30,581 |
def read_fts(self,s, orders=None, filename=None, pfits=True, verb=True):
"""
SYNTAX: read_fts(filename)
OUTPUT: namedtuple('spectrum', 'w f berv bjd blaze drift timeid sn55 ')
w - wavelength
f - flux
berv - Barycentric Earth Radial Velocity
bjd - Barycentric J... | 30,582 |
def main():
"""The main function."""
model_args, training_args, inference_args = uisrnn.parse_arguments()
diarization_experiment(model_args, training_args, inference_args) | 30,583 |
def save_model(sess, model_saver, model_out_dir):
"""
Saves the FCN model.
:param sess: TF Session
:param model_saver: TF model saver
:param model_out_dir: Directory to save the model in
"""
# Create a folder for the models:
if os.path.exists(model_out_dir):
shutil.rmtree(model_... | 30,584 |
def union_exprs(La, Lb):
"""
Union two lists of Exprs.
"""
b_strs = set([node.unique_str() for node in Lb])
a_extra_nodes = [node for node in La if node.unique_str() not in b_strs]
return a_extra_nodes + Lb | 30,585 |
def programs_reload():
"""Reload programs from config file
Parameters (default):
- do_create (True)
- do_update (True)
- do_pause (False)
"""
try:
result = dar.reload_programs(**request.args)
except TypeError as e:
log.info("Caught TypeError: %s" % (str(e)))
... | 30,586 |
def generate_urls():
"""Gathers clinical trials from clinicaltrials.gov for search term
defined in build_url() function and downloads to specified file format.
"""
api_call = build_url(expr='Cancer', max_rnk=1, fmt='json')
r = requests.get(api_call)
data = r.json()
n_studies = data['... | 30,587 |
def xyz2luv(xyz, illuminant="D65", observer="2"):
"""XYZ to CIE-Luv color space conversion.
Parameters
----------
xyz : (M, N, [P,] 3) array_like
The 3 or 4 dimensional image in XYZ format. Final dimension denotes
channels.
illuminant : {"A", "D50", "D55", "D65", "D75", "E"}, option... | 30,588 |
def safe_open_w(path):
"""
Open "path" for writing, creating any parent directories as needed.
"""
mkdir_p(os.path.dirname(path))
return open(path, 'wb') | 30,589 |
def mysql_drop_tables():
""" Drop the application tables"""
require('environment', provided_by=[production, staging])
total_tables = mysql_count_tables()
question = ("Do you want to drop the {} tables in '%(db_name)s'?"
.format(total_tables) % env)
if not confirm(question):
... | 30,590 |
def direct_publish_workflow(previous_model, new_deposit):
"""Workflow publishing the deposits on submission."""
from b2share.modules.deposit.api import PublicationStates
new_state = new_deposit['publication_state']
previous_state = previous_model.json['publication_state']
if previous_state != new_s... | 30,591 |
def today():
"""
Today Page:
Displays all the notifications like the word of the day, news highlights or friends who added you or shared a
note with you
"""
return render_template('main/today.html', username=session['username']) | 30,592 |
def load_data_states(csv_filename):
"""Load data for file .csv."""
with open(csv_filename, mode='r') as csvfile:
reader = csv.DictReader(csvfile)
for row in reader:
state = State(**row)
#state.save()
print(state) | 30,593 |
def compile_read_regex(read_tags, file_extension):
"""Generate regular expressions to disern direction in paired-end reads."""
read_regex = [re.compile(r'{}\.{}$'.format(x, y))\
for x, y in itertools.product(read_tags, [file_extension])]
return read_regex | 30,594 |
def hello_world():
"""Print 'Hello World!' to the console."""
print("Hello world!") | 30,595 |
def filter(start=None, stop=None, **kwargs):
"""
Get commands with ``start`` <= date < ``stop``. Additional ``key=val`` pairs
can be supplied to further filter the results. Both ``key`` and ``val``
are case insensitive. In addition to the any of the command parameters
such as TLMSID, MSID, SCS, S... | 30,596 |
def _get_energy_at_time(masses, pos, vel, time_idx):
"""
Internal function used to calculate kinetic energy and potential energy at
a give time index using a vectorized direct sum approach. This function is
necessary to facilitate the parallelization of the energy calculation
across multiple CPU cor... | 30,597 |
def test_base_forest_quantile():
"""
Test that the base estimators belong to the correct class.
"""
rng = np.random.RandomState(0)
X = rng.randn(10, 1)
y = np.linspace(0.0, 100.0, 10.0)
rfqr = RandomForestQuantileRegressor(random_state=0, max_depth=1)
rfqr.fit(X, y)
for est in rfqr.... | 30,598 |
def get_root_url_for_date(date):
"""
Returns the root URL of the TMCDB web I/F for the given date.
The argument date should be an ISO-8601 date string (YYYY-MM-DD).
The returned URL already contains the date.
"""
year = date[:4]
mm = date[5:7]
hostname = get_host_name()
return "%s/i... | 30,599 |
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