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def repeat(s: str, n: int) -> str: """ Return s repeated n times; if n is negative, return the empty string. >>> repeat('yes', 4) 'yesyesyesyes' >>> repeat('no', 0) '' >>> repeat('no', -2) '' >>> repeat('yesnomaybe', 3) 'yesnomaybeyesnomaybeyesnomaybe' """ return s * n
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def set_or_callable(value): """Convert single str or None to a set. Pass through callables and sets.""" if value is None: return frozenset() if callable(value): return value if isinstance(value, (frozenset, set, list)): return frozenset(value) return frozenset([str(value)])
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def add_id(pos_list, image_id=0): """ Add id for gather feature, for inference. """ new_list = [] for item in pos_list: new_list.append((image_id, item[0], item[1])) return new_list
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def is_empty_tensor(t): """Returns whether t is an empty tensor.""" return len(t.size()) == 0
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import numpy def sinusoid( frequency, sampling_frequency=16000, duration=0.025 ): """Generate a sinusoid signal. Args: frequency (int): the frequency of the sinusoidal signal. sampling_frequency (int, optional): sampling frequency in Hz. Defaults to 16000. duration (flo...
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def isNotTrue (b) : """return True if b is not equal to True, return False otherwise >>> isNotTrue(True) False >>> isNotTrue(False) True >>> isNotTrue("hello world") True """ # take care: not(X or Y) is (not X) and (not Y) if b is not True and b != True : # base case: b ...
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def search(variable: str, target: str) -> str: """Search serice using mwapi on wikidata Args: variable (str): variable name (?film, ?director...) target (str): value to search for Returns: str: service query """ if variable is None or target is None: return "" ...
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def postprocess_question(text): """postprocess the output of question generation model for fair readable. output. Args: text (text): generated question to be processed. Returns: str: clean readable text. """ output = text.replace("question: ", "") output = output.strip()...
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def get_job_data(job, average, qubit_idx, scale_factor): """ Retrieve data from a job that has already run. """ job_results = job.result(timeout=120) # Timeout after 120 s result_data = [] for i in range(len(job_results.results)): if average: # Get avg data result_data.appe...
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def expand_url(url, protocol): """ Expands the given URL to a full URL by adding the magento soap/wsdl parts :param url: URL to be expanded :param service: 'xmlrpc' or 'soap' """ if protocol == 'soap': ws_part = 'api/?wsdl' elif protocol == 'xmlrpc': ws_part = 'index.php...
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def inner_product(x, y): """Inner product.""" return x.dot(y)
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def to_millis(seconds): """ Converts the time parameter in seconds to milliseconds. If the given time is negative, returns the original value. :param seconds: (Number), the given time in seconds. :return: (int), result of the conversation in milliseconds. """ if seconds >= 0: return int...
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from pathlib import Path import re def find_version(): """Retrieve the version.""" constpy = Path("dataplaybook/const.py").read_text() version_match = re.search(r"^VERSION = ['\"]([^'\"]+)['\"]", constpy, re.M) if version_match: return version_match.group(1) raise RuntimeError("Unable to f...
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def escape_nl(msg): """ It's nice to know if we actually sent a complete line ending in \n, so escape it for display. """ if msg != '' and msg[-1] == "\n": return msg[:-1] + "\\n" return msg
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def noun(name: str, num: int) -> str: """ This function returns a noun in it's right for a specific quantity :param name: :param num: :return: """ if num == 0 or num > 1: return name + "s" return name
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def get_assessor_dict(assessor_label, assessor_path): """ Generate the dictionary for an assessor from the folder in the queue :param assessor_label: assessor label :param assessor_path: assessor path on the station :return: None """ assessor_dict = dict() keys = ['project_id', 'subject...
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import torch def _rmse(y, y_hat): """RMSE""" y_hat = y_hat.unsqueeze(1) if y_hat.dim() == 1 else y_hat y = y.unsqueeze(1) if y.dim() == 1 else y assert y.shape == y_hat.shape assert y.dim() == 2 assert y.shape[-1] == 1 return torch.nn.functional.mse_loss(y, y_hat).pow(0.5)
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import re def build_tx_cigar(exons, strand): """builds a single CIGAR string representing an alignment of the transcript sequence to a reference sequence, including introns. The input exons are expected to be in transcript order, and the resulting CIGAR is also in transcript order. >>> build_tx_...
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def DictionaryofDate_valuetoArrays(Date_value): """Returns (array): date, value """ date = Date_value.keys() date.sort() value = [] for d in date: value.append(Date_value[d]) return date, value
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import os def _in_load_test_mode(): """Returns True if the default values should be used instead of the server provided bot_config.py. This also disables server telling the bot to restart. """ return os.environ.get('SWARMING_LOAD_TEST') == '1'
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import re def cassini_time(time): """Parse Cassini time. Parameters ---------- time: str, int or float Cassini time. Returns ------- float Parsed Cassini time as float. Raises ------ ValueError If the input time pattern is invalid. Examples -...
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def pods_by_uid(pods): """Construct a dict of pods, keyed by pod uid""" return {pod["metadata"]["uid"]: pod for pod in pods}
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def _tags_conform_to_filter(tags, filter): """Mirrors Bazel tag filtering for test_suites. This makes sure that the target has all of the required tags and none of the excluded tags before we include them within a test_suite. For more information on filtering inside Bazel, see com.google.devtools....
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import optparse def get_options(): """define options for this script and interpret the command line""" optParser = optparse.OptionParser() optParser.add_option("--nogui", action="store_true", default=False, help="run the commandline version of sumo") options, args = optParser....
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def set_max_results(uri, max): """Set max-results parameter if it is not set already.""" max_str = str(max) if uri.find('?') == -1: return uri + '?max-results=' + max_str else: if uri.find('max-results') == -1: return uri + '&max-results=' + max_str else: return uri
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import torch def kronecker(mat1, mat2): """ kronecker product between 2 2D tensors :param mat1: 2d torch.Tensor :param mat2: 2d torch.Tensor :return: kronecker product of mat1 and mat2 """ s1 = mat1.size() s2 = mat2.size() return torch.ger(mat1.view(-1), mat2.view(-1)).reshape(*(s1 + s2)).permute([0, 2, 1, 3...
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def StringCompression(s: str) -> str: """Compresses the specified string using counts of repeated characters. >>> StringCompression("") '' >>> StringCompression("a") 'a' >>> StringCompression("ab") 'ab' >>> StringCompression("abc") 'abc' >>> StringCompression("aba") 'aba...
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import re def possibly_fix_width(text): """Heuristic to possibly mark-up text as monospaced if it looks like a URL, or an environment variable name, etc.""" if text in ['', '--']: return text # stringify the arguments if type(text) not in [type('string'), type(u'Unicode')]: te...
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def weighted_score(raw_earned, raw_possible, weight): """ Returns a tuple that represents the weighted (earned, possible) score. If weight is None or raw_possible is 0, returns the original values. When weight is used, it defines the weighted_possible. This allows course authors to specify the exa...
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def addr_entry(key): """querries the user for address data, cleans it""" # getting the input rawline = input( 'please enter ' + key + ': ' ) # get rid of trailing whitespace line = rawline.strip() # replace tabs line = line.replace('\t', ' ') # remove forbidden strings ...
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import argparse def parse_arguments(): """ Read in the config file specifying all of the parameters """ parser = argparse.ArgumentParser(description="Learn subgraph embeddings") parser.add_argument("-config_path", type=str, default=None, help="Load config file") args = parser.parse_args() ...
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def harmonic_epmi_score(pdict, wlist1, wlist2): """ Calculate harmonic mean of exponentiated PMI over all word pairs in two word lists, given pre-computed PMI dictionary - If harmonic ePMI is undefined, return -inf """ total_recip_epmi = None # Number of pairs for which PMI exists N...
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def optional_apply(f, value): """ If `value` is not None, return `f(value)`, otherwise return None. >>> optional_apply(int, None) is None True >>> optional_apply(int, '123') 123 Args: f: The function to apply on `value`. value: The value, maybe None. """ if value is...
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def repl_func(m): """process regular expression match groups for word upper-casing problem""" return m.group(1) + m.group(2).upper()
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def prod(F, E): """Check that the factorization of P-1 is correct. F is the list of factors of P-1, E lists the number of occurrences of each factor.""" x = 1 for y, z in zip(F, E): x *= y**z return x
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def sort_data(data, cols): """Sort `data` rows and order columns""" return data.sort_values(cols)[cols + ['value']].reset_index(drop=True)
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import torch def argval_subsample_idx(values, n, polarity="MAX"): """values is a list, n an int, polarity is MAX or MIN""" assert n > 0 descending = {"MAX": True, "MIN": False}[polarity] _, idxs = torch.sort(torch.Tensor(values), descending=descending) return idxs.tolist()[:n]
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import logging def sanitise_graphite_url(current_skyline_app, graphite_url): """ Transform any targets in the URL that need modifications like double encoded forward slash and return whether the URL was sanitised and the url. :param current_skyline_app: the Skyline app calling the function :param...
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def _union_all(iterables): """Return a set representing the union of all the contents of an iterable of iterables. """ out = set() for iterable in iterables: out.update(iterable) return out
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from typing import List def construct_relative_positions(pos: int, max_length: int) -> List[int]: """Construct relative positions to a specified pos Args: pos: the pos that will be `0` max_length: max sequence length Returns: a list of relative positions Raises: Valu...
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import subprocess import os def score(molfile1, molfile2, path_to_lsalign='/data/rsg/chemistry/yangk/LSalign/src'): """ LSalign similarity score for two molecules, each in a separate molfile whose path is given as input. """ with open('tmp.txt', 'w') as f: subprocess.call([os.path.join(path_to...
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import pathlib def _match_path(p1, p2): """Compare two paths from right to left and return True if they could refer to the same file. As a special case, if the second argument is None, or empty, it is always considered a match. This simplifies query logic when the target does not have a path comp...
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import argparse def create_parent_parser(prog_name): """ Create parent parser Args: prog_name (str): program name Returns: parser: parent argument parser Raises: DistributionNotFound: version of family not found """ parent_parser = argparse.ArgumentParser(prog=p...
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import re def has_text_an_image(text): """ :param text: String with base64 data :return: true if text has base64 data otherwise false """ regex_to_extract = r'data:image.+\"' return re.search(regex_to_extract, text)
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def _extract_asm_mnemonic(asm): """ :param asm: :type asm: """ return asm.split()[0].strip().upper()
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def get_spaces(depth): """returns the required number of spaces for indentation purpose""" return ' ' * (depth * 4 - 2)
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import re def _clean(arr): """Convert ratio values for missing pieces of the tax into "unclassified" and remove empty entries. Rules: - if all the cols are unclassified then remove row. - if there is no classification for either genus, subfamily or family then remove row. - collaps...
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from os import popen def unixgetaddr(program): """Get the hardware address on a Unix machine.""" for line in popen(program): words = line.lower().split() if 'hwaddr' in words: addr = words[words.index('hwaddr') + 1] return int(addr.replace(':', ''), 16) if 'ethe...
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def sequence_id(sqlite_connection): """ Функция возвращает список из id всех остановок """ try: cur = sqlite_connection.cursor() cur.execute("SELECT _id FROM stopsker") seq = list() for elem in cur.fetchall(): seq.append(int(elem[0])) except Exception a...
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def add_matches(flight_matches, flight_ids): """ Add new matches to the flight_ids dict. Returns the number of newly matched flights. """ matches = 0 for i in flight_matches.index: prev_id = flight_matches.loc[i, 'FLIGHT_ID_x'] next_id = flight_matches.loc[i, 'FLIGHT_ID_y'] ...
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def get_requirements_from_file(requirements_file): """ Get requirements from file. :param str req_file: Name of file to parse for requirements. :return: List of requirements :rtype: list(str) """ requirements = [] with open(requirements_file) as f: for line in f: lin...
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from typing import Tuple from typing import List def extract_encoded_headers(payload: bytes) -> Tuple[str, bytes]: """This function's purpose is to extract lines that can be decoded using the UTF-8 decoder. >>> extract_encoded_headers("Host: developer.mozilla.org\\r\\nX-Hello-World: 死の漢字\\r\\n\\r\\n".encode("...
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def formatted_loss_components_string(components: dict) -> str: """ Formats the components returned by calc_LV_Lbeta """ total_loss = components['L_V']+components['L_beta'] fractions = { k : v/total_loss for k, v in components.items() } fkey = lambda key: f'{components[key]:+.4f} ({100.*fractions...
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def filter_ignore(annotations, filter_fns): """ Set the ``ignore`` attribute of the annotations to **True** when they do not pass the provided filter functions. Args: annotations (dict or list): Dictionary containing box objects per image ``{"image_id": [box, box, ...], ...}`` or list of annotations ...
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def update_dict_params_for_calibration(params): """ Update some specific parameters that are stored in a dictionary but are updated during calibration. For example, we may want to update params['default']['compartment_periods']['incubation'] using the parameter ['default']['compartment_periods_incubatio...
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def counting_sort(numbers): """Sort given numbers (integers) by counting occurrences of each number, then looping over counts and copying that many numbers into output list. Running time: O(n + k) where k is the range of numbers, because if k is really high then affects the run time significantly. Memo...
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def _unit_fun(x): """unit function""" return x
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import math import statistics def _get_average_da(streams_da: dict) -> dict: """Calculate average data availability among all data streams""" total_results = {} for k, v in streams_da.items(): for i, j in v.items(): if i not in total_results: total_results[i] = [] ...
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import os def basename(fullname): """os.path.basename""" return os.path.basename(fullname)
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def fixture_extended(): """Return a /forecast/extended/pollen/<ZIP> response.""" return { "Type": "pollen", "ForecastDate": "2018-06-12T00:00:00-04:00", "Location": { "ZIP": "80238", "City": "DENVER", "State": "CO", "periods": [ ...
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def is_sequencing(lane_info): """ Determine if we are just sequencing and not doing any follow-up analysis """ if lane_info['experiment_type'] in ('De Novo','Whole Genome'): return True else: return False
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import string def _split_punc(source): """Split leading or trailing punctuation.""" tokens = source.split(" ") new_tokens = [] for token in tokens: if all(char in string.punctuation for char in token): new_tokens.append(token) continue leading_punc = None for punc in string.punctuatio...
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def get_cluster_name(tags): """ Get the cluster name from the list of specified tags :param tags: tags :type tags: [str] :returns: cluster name :rtype: str """ for tag in tags: if tag.startswith("storm.cluster.name:"): return tag.replace("storm.cluster.name:", "") ...
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from typing import BinaryIO import io import wave import struct def fixture_two_chunk_plain_wav() -> BinaryIO: """Creates a fixture WAVE file with two distinct sections. The audio is 100Hz mono. Each section 10 samples long. Samples in the first alternate between +/-(1 << 5) and in the second between +/-(1 << ...
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def _detailed_parse_choice(choice): """Return Selected Choice's Full Name string as per its codename. Choices are based as per our server. :param choice: str The code name of the choice :return: str Return Selected Choice's Full Name string as per its codename """ ...
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def compute_mass_list(dialog_idx, sen_idx): """ Most confusing step... dialog_idx = [41, 81, 134, ...] means the first dialogue of the subtitle is plain_text[0:41] the second dialogue of the subtitle is plain_text[41:81] the third dialogue of the subtitle is plain_text[81:134] ...
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import re def do_parse_pod_name(text): """Find the pod name from the failure and return the pod name.""" p = re.search(r' pod (\S+)', text) if p: return re.sub(r'[\'"\\:]', '', p.group(1)) else: return ""
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def _testProduct_to_dict(product_obj, ctx): """ Returns testProduct instance in dict format. Args: product_obj (_TestProduct): testProduct instance. ctx (SerializationContext): Metadata pertaining to the serialization operation. Returns: dict: product_obj as a ...
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def hxltm_hastag_de_csvhxlated(csv_caput: list) -> list: """hxltm_hastag_de_csvhxlated [summary] Make this type of conversion: - 'item__conceptum__codicem' => '#item+conceptum+codicem' - 'item__rem__i_ara__is_arab' => '#item+rem+i_ara+is_arab' - '' => '' Args: csv_caput (list): Array o...
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def preprocessing(df, attribute): """ This is the base preprocessing for french. It scapes \ char and replace all ocurrence of - :df: pandas data frame. :attribute: atribute of df. """ return getattr(df, attribute).map(lambda sent: sent.lower().replace('\'', '\\\' ').replace('-', ' '))
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import pickle def load_pickle(file, decompress=True): """ Load a .pickle file. :param file: file .pickle to load. :param decompress: the compress or not the file :return: loaded data. """ with open(file, "rb") as f: if decompress: data = pickle.load(f) else: ...
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def latex(df): """Converte o DF fornecido para tabela LaTeX""" return print(df.to_latex())
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def get_accountinfo(msg: dict) -> str: """ Returns a dictionary containing the account id and an array of prowler group checks. """ if msg == "": raise IndexError else: try: account_id = msg['Id'] return account_id except KeyError as err: ...
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import os def add_suffix(img_file,suffix): """ add suffix for a given file name, and not change the file type :param img_file: img file, e.g. "xxx.jpg" :param suffix: "——abcde" :return: "xxx——abcde.jpg" """ name = os.path.splitext(img_file)[0] type_ = os.path.splitext(img_file)[1] ...
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def shp2geojsonOgr(layer): """Shapefile to Geojson conversion using ogr.""" cmd = 'ogr2ogr -f GeoJSON -t_srs'\ + ' crs:84'\ + ' {layer}.geojson'\ + ' {layer}.shp' cmd = cmd.format(layer=layer) return cmd
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def lut_canonical_potential_edge(potential_edge): """Returns a canonical name of a potential edge, with respect to LUT height. Parameters ---------- potential_edge : str Instantiated name of the potential edge to be canonicized. Returns ------- str A canonical potential edg...
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def encode_boolean(value): """ Returns 1 or 0 if the value is True or False. None gets interpreted as False. Otherwise, the original value is returned. """ if value is True: return 1 if value is False or value is None: return 0 return value
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def validate_sami_id(candidate_sami_id): """Dummy validation function for SAMI IDs, always returns true.""" return True
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def get_workloads(month): """Calls the same method on the Month model.""" return month.get_workloads()
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def associate_node_id(tr, node=""): """ Returns a dictionary with key 'id' and value as the ID associated with the node string. """ return {"id": tr.get_uml_id(name=node)}
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import argparse def parse_arguments(args): """ Parse the arguments from the user """ parser = argparse.ArgumentParser( description= "Filter UniRef EC list\n", formatter_class=argparse.RawTextHelpFormatter) parser.add_argument( "-i","--input", help="the UniRef ...
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import os def extract_games(world_folder): """ Locate the games in a world folder. """ envs = [] for filename in os.listdir(world_folder): if filename.endswith(".ulx"): envs.append(world_folder + "/" + filename) return envs
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def clause_words(clause_tree): """ Returns the constants in a clause. These will be everything that is not a keyword. """ if clause_tree == []: return [] elif clause_tree[0] == 'func': assert(len(clause_tree) == 3) if clause_tree[2] == []: return [clause_tree[1]] else: return [clause_...
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import re def find_nonAscii(text): """ Return the first appearance of a non-ASCII character (in a `Match` object), or `None`. """ regex = re.compile(r'([^\x00-\x7F])+') return re.search(regex, text)
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def linear_search(arr, x): """ Performs a linear search :param arr: Iterable of elements :param x: Element to search for :return: Index if element found else None """ l = len(arr) for i in range(l): if arr[i] == x: return i return None
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import argparse def arg_parser() -> dict: """Parse CLI arguments. Returns: dict: parsed arguments in dictionary """ parser = argparse.ArgumentParser(description=__doc__) parser.add_argument("words", nargs="+", type=str, help="Sentence that will be translated") return parser.parse_args...
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def out_labels(G, q): """Returns a list of each of the labels appearing on the edges starting at `q` in `G`. Parameters ---------- G : labeled graph q : vertex in `G` Examples -------- >>> G = nx.MultiDiGraph() >>> G.add_edge(1, 2, label="a") >>> G.add_edge(1, 3, label="a")...
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def convert_tf_config_to_jax_bert(config): """Convert TF BERT model config to be compatible with JAX BERT model. Args: config: dictionary of TF model configurations Returns: dictionary of param names and values compatible with JAX BERT model """ unnecessary_keys = ['initializer_range', 'backward_com...
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def find_sequences_before(context, strip): """ Returns a list of sequences that are before the strip in the current context """ return [s for s in context.sequences if s.frame_final_end <= strip.frame_final_start]
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import math def update_one_contribute_score(user_total_click_num): """ item cf update sim contribution score by user """ return 1/math.log10(1+user_total_click_num)
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def get_percent_alloc(values): """ Determines a portfolio's allocations. Parameters ---------- values : pd.DataFrame Contains position values or amounts. Returns ------- allocations : pd.DataFrame Positions and their allocations. """ return values.divide( ...
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import argparse def parse_args(): """Argument parser.""" parser = argparse.ArgumentParser(description='Argument parser for AUPR-in/AUPR-out evaluations.') parser.add_argument('--algo_name', type=str, default='e3outlier-0.1') parser.add_argument('--positive', type=str, default='inliers', choices=['inli...
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def format_latex(ss): """ Formats a string so that it is compatible with Latex. :param ss: The string to format :type ss: string :return: The formatted string :rtype: string """ tt = (str(ss).replace('_', ' ') .replace('%', '\%') ) r...
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def MatchingFileType(file_name, extensions): """Returns true if the file name ends with one of the given extensions.""" return bool([ext for ext in extensions if file_name.lower().endswith(ext)])
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def escape_path(value: bytes) -> str: """ Take a binary path value, and return a printable string, with special characters escaped. """ def human_readable_byte(b: int) -> str: if b < 0x20 or b >= 0x7F: return "\\x{:02x}".format(b) elif b == ord(b"\\"): return...
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def raw_reward_threshold(threshold): """Return a reward processor that cut off at a threshold.""" def fn(metadata): if metadata['raw_reward'] > threshold: return 1. elif metadata['raw_reward'] > 0: return -1 return metadata['raw_reward'] return fn
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import socket def get_hostname() -> str: """ Get the current hostname, or fall back to localhost. """ try: return socket.getfqdn() except: return 'localhost'
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def SerializeEntries(entries): """Serializes given triplets of python and wire values and a descriptor.""" output = [] for python_format, wire_format, type_descriptor in entries: if wire_format is None or (python_format and type_descriptor.IsDirty(python_format)): wire_fo...
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import socket import subprocess import json def get_instance_identification(): """ Gets an identifier for an instance. Gets EC2 instanceId if possible, else local hostname """ instance_id = socket.gethostname() try: # "special tactics" for getting instance data inside EC2 instance...
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from datetime import datetime def get_submission_data_from_pushshift(raw_submission): """Creates a submission object from a Pushshift Submission JSON Parameters: raw_submission (dict): Pushshift Submission instance Returns: dict: object with information about a submission, like body, author or...
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