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import torch def reference(t): """ Step-function signal with `nstep` steps bounded in [`lo`, `hi`] """ lo, hi = -.8, .8 nstep = 4 tlen = 25+1 return torch.floor(t*nstep/tlen)*(hi-lo)/nstep + lo
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def credibility(GLOB_CONC, b, DISC, C, A): """ Calculates the credibility vectors for a given boundary reference action using the global concordance vector and the discordance matrix for the same boundary reference action. :param GLOB_CONC: Dictionary containing the global concordances vectors for ...
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import struct def defpacket(name: str, **kwargs): """Define a protocol packet.""" fmt: str = ">" + "".join(kwargs.values()) msg_type = namedtuple(name, kwargs.keys()) # type: ignore class _MessageType: length = struct.calcsize(fmt) @staticmethod def decode(data: bytes, allow...
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def config_file(): """ Creates a ThreatPlaybook config file to store Authorization Token :return: Path of config file """ # directory = expanduser(path='~/.threatplaybook') config_file_path = 'config' open(config_file_path,'a').close() return config_file_path
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def traffic_features_normalize(features): """ normalize temporal features. :param features: ndarray, features. :return: ndarray """ features = features.astype('float') # 0 1 2 3 4 5 6 7 8 # ['year', 'month', 'day', 'hour', '...
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def nvl(value, default=''): """Get specified value, or an empty string if value is empty :param object value: value to be checked :param object default: default value to be returned if value is *false* :return: input value, or *default* if value is *false* >>> from pyams_utils.unicode import nvl ...
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def get_SI_land(y_ob, y_fg, i89, i150): """ compute scattering index over land """ SI_ob = y_ob[i89, :] - y_ob[i150, :] SI_fg = y_fg[i89, :] - y_fg[i150, :] return (SI_ob + SI_fg)/2
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def gl_get_project_membership(gl, user_id): """ Get a list of all projects where user_id is a member :param gl: GitLab instance :param user_id: user id (not username!) this field is (gitlab User object).id """ gl_projects = gl.projects.list(as_list=False) print(" found project manager ", gl...
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def njit_time_point_thresh(wf_in, threshold, tp_max, tp_out): """ Find the last timepoint before tp_max that wf_in crosses a threshold wf_in: input waveform threshold: threshold to search for tp_max: time of a maximum of a waveform that the search starts at tp_out: final time that waveform i...
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import subprocess def last_commit_date(): """Returns the date of the last commit.""" return subprocess.check_output(['git', 'log', '-1', '--pretty=%ad', '--date=format:%d %b %H:%M', 'py/calendon']).decode().strip()
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def sum(num1, num2): """ This function take the sum of two """ return num1 + num2
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def cli(ctx, category_id): """Get details of a given category. Output: details of the given category """ return ctx.gi.categories.show_category(category_id)
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import os def root_dir(): """Retrives the root testing directory. Returns: The root testing directory. """ dirname = os.path.abspath(os.path.dirname(__file__)) return os.path.abspath(os.path.join(dirname, os.pardir))
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import json import base64 def custom_header(algorithm, media): """ Creates JWT header. Author: Lucas Antognoni Arguments: algorithm (str): Signing algorithm. media (str): Media type of JWS. Response: header (bytes): Ba...
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from datetime import datetime def get_year_days_num(): """ This function calculate number of days in year :return: number of days in year """ year = datetime.now().year if year % 4 == 0: if year % 100 == 0 and year % 400 != 0: return 365 return 366 return 365
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from pathlib import Path import os def find_project_root(): """ We're using the project structure for tests, find the directory that is the project root, traversing up from the current working dir. :return: """ path = Path(os.getcwd()) while path is not '/': if (path / 'arvet').is_...
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def calc_julian_day(date): """ Calculates the Julian Day (days since 01 Jan) for a given date. Needed to download files from AWS server Parameters ------------ date : str Date to be converted to julian day. Format: YYYYMMDD, YYYYMMDDHH, or YYYYMMDDHHMM Returns ---------...
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import torch def drop_path(x, drop_prob=0., training=False): """Drop paths (Stochastic Depth) per sample (when applied in main path of residual blocks). We follow the implementation https://github.com/rwightman/pytorch-image-models/blob/a2727c1bf78ba0d7b5727f5f95e37fb7f8866b1f/timm/models/layers/drop....
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def _path_to_release(path): """Compatibility function, allows us to use release identifiers like "3.0" and "3.1" in the public API, and map these internally into storage path segments.""" if path == "v3": return "3.0" elif path.startswith("v3."): return path[1:] else: raise R...
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import math def pi(): """ Número pi. .. math:: \pi Returns: float: El número pi. """ return math.pi
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import sys import re import random def non_aminoacid_converter(seq, amino_con): """ Converts Non amino acid characters from protein sequence """ if amino_con == '':sys.stderr.write("usage: Provide a choice for replacing non amino acid characters\n");sys.exit(-1) flag = 0 if len(amino_con)>1: ...
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import tempfile import ssl def create_ssl_ctx(pem): """Create temporary file to store plain-text cert and create ssl context from it. This doesn't seem really secure since it requires using the filesystem, but I can't see another way as the low-level openssl api requires a file and will not accep...
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def bitwise_or(first_value, second_value): """Perform a bitwise or operation.""" return first_value | second_value
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import numpy as np def get_2D_cylindrical_map_in_cylindrical_coords( system, var, phimin, phimax, Nphi, Nr, rmin=None, rmax=None, time=0, z=0 ): """Create a 2D map of the eigenmode var stored in system.result[var]. This function assumes that the eigenmodes have the form f(r)*exp(i kz z + i m phi...
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def _check_decorated_arbitrary(to_check:list, parameters:list) ->dict: """ Checks and modifies arbitrary parameters Checks and modifies the arbitrary parameters (for 'args') of the decorated function. NOTE: Used error codes ---------------------------------------------- [A.0]: not...
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import numpy def predict_linear_regression(fitted_model, array): """ It's possible the array doesn't have enough values Assumes array does not have a constant term """ if len(array) == fitted_model.params - 1: array = numpy.concatenate(([1],array)) return fitted_model.params @ arr...
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def format_html_desc(node): """ Formats a XML node into a HTML format. """ desc_buf = '' for desc in node.childNodes: if desc.nodeName == "#text": if desc.data is not '': if desc.parentNode.nodeName != "p": desc_buf += "<p>" + desc.data + "</p>" else: desc_buf += desc.data else: desc_b...
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import warnings def assert_warns(wtype, f, *args, **kwargs): """Check that a function call `f(*args, **kwargs)` raises a warning of type wtype. Returns the output of `f(*args, **kwargs)` unless there was no warning, in which case an AssertionError is raised. """ # Check that f() raises a warn...
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def _SetMockCheckRunGitBehavior(mock_obj, command_output_map): """Sets the behavior of a mock function according to the given mapping.""" # Unused argument 'cwd', expected in args list but not needed. # pylint: disable=W0613 def FakeCheckRunGit(in_command, cwd=None): for command, output in command_output_ma...
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import torch def collate_fn(batch): """Zero-pads model inputs and targets based on number of frames per step """ # Right zero-pad mgc with extra single zero vector to mark the end input_lengths, ids_sorted_decreasing = torch.sort( torch.LongTensor([x[0].size(2) for x in batch]), dim=0,...
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import hashlib def get_fingerprint(contents: str) -> str: """ Generate a fingerprint for the contents of a virtual relation. This fingerprint is used by the server for caching purposes. :param contents: The full contents of a tsv file :returns: md5 sum representing the file contents """ ...
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def crop_image(frame, bbox): """Return the cropped image from frame specified by bbox""" x_start, x_end = int(bbox[0]), int(bbox[2]) y_start, y_end = int(bbox[1]), int(bbox[3]) crop_img = frame[y_start:y_end, x_start:x_end, :].copy() return crop_img
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import math def GeometricMean(values): """Compute a rounded geometric mean from an array of values.""" if not values: return None # To avoid infinite value errors, make sure no value is less than 0.001. new_values = [] for value in values: if value > 0.001: new_values.append(value) else: ...
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from typing import Tuple import string def return_c_values(cardinality: int) -> Tuple[list, list]: """Return categorical values for C+ and C-. Create string values to be used for the categorical variable c. We build two sets of values C+ and C-. All values from C+ end with "A" and all values from C-...
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import pathlib from typing import List def confirm_text_in_file(file_path: pathlib.Path, tag: str, text: str) -> bool: """Confirm the expected text is in the file after the tag.""" lines: List[str] = [] with file_path.open('r') as f: lines = f.readlines() found_tag = False for line in line...
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import os def get_template_dir(): """Find and return the ntc-templates/templates dir.""" try: template_dir = os.path.expanduser(os.environ["NET_TEXTFSM"]) index = os.path.join(template_dir, "index") if not os.path.isfile(index): # Assume only base ./ntc-templates specified ...
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import torch def mat2euler(mat): """ Convert rotation matrix to euler angles. https://github.com/pulkitag/pycaffe-utils/blob/master/rot_utils.py#L283 Args: mat: rotation matrix in zyx format -- size = [B, 3, 3] Returns: angle: rotation angle along 3 axis (in radians, it's not uni...
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def _encode_dates(not_valid_before, not_valid_after): """ Encode dates into compressed certificate format. :param datetime not_valid_before: Certificate not valid before date. :param datetime not_valid_after: Certificate not valid after date. :returns bytearray: Compressed certificate dates format ...
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import json def read_shapefile_data(path,file_name): """ Reads in a json file containing the path to shapefiles, on regional, province and municipality level and crs foe encoding """ d=json.load(open(path+file_name)) path_shapefiles=d["path_shapefiles"] regions=d["regions"] provi...
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def combine_reciprocal_hits(keep_df, other_df): """ """ missed_samples = set(other_df.index.values).difference( set(keep_df.index.values)) for each in missed_samples: hit = other_df.loc[each, 'B_id'] if hit not in keep_df['B_id'].values: new_row = [hit] +...
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def zstrip(chars): """Strip all data following the first zero in the string""" if '\0' in chars: return chars[:chars.index("\0")] return chars
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from typing import Tuple def channel_error(input_shape: Tuple[int, int, int]) -> ValueError: """ Value Error Message for Channel Error :param input_shape: Three Int Tuple :return: Custom text Value Error """ return ValueError( f"The input must have 3 channels; got `input_shape={str(inp...
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import json def _json_dumps(value): """ json.dumps parameters for dumping unicode into JS """ return json.dumps(value, separators=(",", ":"), ensure_ascii=False)
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def _extended_gcd(a, b): """Returns (g, x, y) such that a*x + b*y = g = gcd(a, b)""" x, x_old, y, y_old = 0, 1, 1, 0 while a != 0: (q, a), b = divmod(b, a), a y, y_old = y_old, y - q * y_old x, x_old = x_old, x - q * x_old return b, x, y
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def guess_type(text): """ Guess the type of a value encoded in a string. """ # int try: int(text) return int except: pass # float try: float(text) return float except ValueError: pass # string return str
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def slash_join(*args: str) -> str: """ Joins ``args`` with a single "/" >>> slash_join('http://example.com', 'a/', '/foo/') 'http://example.com/a/foo/' """ if not args: return '' append_slash = args[-1].endswith('/') url = '/'.join([arg.strip('/') for arg in args]) return u...
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import re def extract_channel_name(channel): """Extracts channel name. Hiddens default system channels.""" channel_name_regexp = r'\(([^}]+)\)' # Hidden default system channels channel_system_default_regexp = r'SYSTEM.' # Hidden default system channels for automatic definition of receiver and serv...
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import math def list_values_approx_equal(num_list, rel_tol): """ Check if all values in a list are within a relative tolerance of each other :param num_list: List of numbers :param rel_tol: The relative numerical tolerance :return: Truth value """ for i in range...
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import networkx import re def build_graph(data): """Builds the graph based on given data. :param data: json data as a dictionary :type data: dictionary :returns: networkx graph. """ graph = networkx.DiGraph() for chain in data['xpaths']: previous = None length = len(chain)...
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def _has_all_keys(op_dict, all_ops): """Check all keys.""" return all([k in op_dict.keys() for k in all_ops]) and len(all_ops) == len(op_dict)
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def sqlobj_from_dict(obj, values): """ Merge in items in the values dict into our object if it's one of our columns. """ for c in obj.__table__.columns: if c.name in values: setattr(obj, c.name, values[c.name]) # This return isn't necessary as the obj referenced is modified, but ...
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def _get_working_shape_and_iterations(requested_shape, max_power_of_two=13): """Returns the necessary size for a square grid which is usable in a DS algorithm. The Diamond Square algorithm requires a grid of size n x n where n = 2**x + 1, for any integer value of x greater than two. To accomodate a reques...
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def generate_parameters(): """Returns a set of parameters (and their reduced values) for which regression values for each model property are known. """ epsilon = 98.0 sigma = 0.37800 bond_length = 0.15 quadrupole = 0.01 quadrupole_star_sqr = (quadrupole * 3.1623) ** 2 / (epsilon * 1.38...
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def unmap_from_unit_interval(y, lo=0., hi=1.): """ Linearly map value in [0, 1] to [lo_val, hi_val] """ return y * (hi - lo) + lo
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def add(a, b): """ Fake dispatcher method to test invoke. """ return a + b
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def parse_raw(sqlContext, input, user): """Parses the raw json for a user""" df = sqlContext.read.json(input + "/" + user + "/" + user + ".json", multiLine=True) return df
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from typing import List from typing import Tuple import argparse def argument_parser(args: List[str]) -> Tuple[List[str], str, bool, str]: """ Use argparse to allow for the processing of input paths, a save location and adjusting the verbosity of the program. we pass args explicitly to simplify testing ...
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def parse_match(ref_index, read_index, length, read_sequence, ref_sequence): """ Process a cigar operation that is a match :param alignment_position: Position where this match happened :param read_sequence: Read sequence :param ref_sequence: Reference sequence :param length: Length of the operat...
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def get_run_id_keys(json_results, run_id_list): """This function finds the key used in the json_results dictionary for a given run ID. These dictionary keys are the files names and there are potentially many keys that are associated with a run ID. For the intended purposes of this function (metadata com...
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def _confirm_loop(msg, logger): """ Confirm in a loop that the user wants to do the thing. Returns a tuple of (yes/no, yesall) :param str msg: :param Logger logger: :rtype: (bool, bool) """ while True: logger.log("%s (yes/yesall/no)", msg) confirm = input() if co...
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import argparse def getParserArgs(): """Parser setup for launcher arguments. """ parser = argparse.ArgumentParser( description="Matt's final project for CDD I & II.", fromfile_prefix_chars='@') parser_merge = parser.add_argument_group('merge') parser_merge.add_argument('-m', '--m...
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def make_uniform(planes_dict, uniques, padding): """ Ensure each section has the same number of images This function makes the output collection uniform in the sense that it preserves same number of planes across sections. It also captures additional planes based on the value of the padding variab...
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def index_div_by_2(List, i): """Get list element via index.""" i = i / 2 return List[int(i)]
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import contextlib import wave def read_wave(path): """Reads a .wav file. Takes the path, and returns (PCM audio data, sample rate). """ with contextlib.closing(wave.open(path, 'rb')) as wf: num_channels = wf.getnchannels() # print(num_channels) assert num_channels == 1 ...
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from os.path import splitext def save_image(image, aspect_ratio, filename, format): """ Save the image with the aspect_ratio details in the name. """ name, ext = splitext(filename) outfile = ''.join([name, '-', str(aspect_ratio), ext]) image.save(outfile, format) return outfile
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import codecs def count_features(path): """ path: location of a corpus file with whitespace-delimited tokens and │-delimited features within the token returns: the number of features in the dataset """ with codecs.open(path, "r", "utf-8") as f: first_tok = f.readline()....
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from pathlib import Path def fixture_db_uri(db_path: Path) -> str: """Return the uri to an in memory database""" return "sqlite:///" + str(db_path)
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import pathlib def file_is_valid(file_p: pathlib.PosixPath) -> bool: """ 验证文件有效性:根据本项目命名规律,所有扩展名为.py或.md文件才是需要目录的 """ return file_p.suffix in (".py", ".md")
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import inspect def get_object_name(obj): """Return a human readable name for the object.""" if inspect.isclass(obj) or inspect.isfunction(obj): cls = obj else: cls = obj.__class__ if cls.__module__.startswith('zine.plugins.'): prefix = cls.__module__.split('.', 2)[-1] elif ...
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def inv_factorize(outputs, ridges, Xtrain, Ytrain, Xtest, Ytest, Ktrain=None, Ktest=None): """return factors needed to solve ridge problem via inv_solve() Parameters ---------- - [see solve_ridge()] """ factors = {'XTX': Xtrain.T.dot(Xtrain)} if len(ridges) > 1: f...
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def extract_tuple( t, num, padding = None ): """This lets us extract a specified number of values from a tuple, even if there aren't that many in the tuple itself. """ result = list(t) if len(result) < num: remainder = num - len(result) result.extend( [padding] * remainder ) ...
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def arrayRankTransform(arr): """ :type arr: List[int] :rtype: List[int] """ arr_1 = arr[:] arr_1.sort() list_1 = [] final_list = [] j=0 for i in range(len(arr_1)): if i>0 and arr_1[i] != arr_1[i-1]: list_1.append(j+1) elif i==0: list_1.appe...
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import subprocess def get_clang_tidy_warnings( line_filter, build_dir, clang_tidy_checks, clang_tidy_binary, files ): """Get the clang-tidy warnings """ command = f"{clang_tidy_binary} -p={build_dir} -checks={clang_tidy_checks} -line-filter={line_filter} {files}" print(f"Running:\n\t{command}") ...
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def index_storage_mode_to_param(value, default="plasma"): """Converts the index storage mode to what Couchbase understands""" if value == "default": return default elif value == "memopt": return "memory_optimized" else: return value
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import re def untokenize(words): """ Untokenizing a text undoes the tokenizing operation, restoring punctuation and spaces to the places that people expect them to be. Ideally, `untokenize(tokenize(text))` should be identical to `text`, except for line breaks. """ # standardize long pause...
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def pobierztypy(ile, maks): """Funkcja pobiera od użytkownika jego typy wylosowanych liczb""" print("Wytypuj %s z %s liczb: " % (ile, maks)) typy = set() i = 0 while i < ile: try: typ = int(input("Podaj liczbę %s: " % (i + 1))) except ValueError: print("Błędne...
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def determine_row(sheet, site_hpo_id): """ Function is used to find the row in the sheet where you can find all the error information for the HPO ID in question :param Sheet (dataframe): pandas dataframe to traverse. Represents a sheet with numbers indicating ...
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def calc_install(runs, cost_index, system_index, tax_rate): """ Calculate total install cost for a manufacturing job. :param runs: Number of runs in the job. :param cost_index: Cost Index for the item. :param system_index: Cost Index for the star system where construction would occur. ...
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def xys2dists(x, y, xarr, yarr): """ euclidean distances to each combination of coordinates from the origin x/y = x/y-coordinate of the origin xarr/yarr = x/y-coordinates of mark points """ dx = abs(xarr - x) dy = abs(yarr - y) return (dx*dx + dy*dy) ** 0.5
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def end_game(game, *args): """Ends the game.""" end_message = args[0] print(end_message) return True
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def is_boundary(horizon, x): """ Function which marks displacement boundary constrained particles 2 is no boundary condition (the number here is an arbitrary choice) -1 is displacement loaded IN -ve direction 1 is displacement loaded IN +ve direction 0 is clamped boundary """ # Does not ...
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from math import floor, log10 def sci_notation(num, decimal_digits=1, precision=None, exponent=None): """ Returns a string representation of the scientific notation of the given number formatted for use with LaTeX or Mathtext, with specified number of significant decimal digits and precision (numb...
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def get_product(): """Gets the product that the image generator is being used to build""" return "BIG-IP"
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import re def split_hostname_index(name, default=None): """ Split the index out of a hostname. E.g. splits "test^1" into ("test", 1). If no index is present, returns (name, default). """ match = re.match(r'^(.*)~(\d+)$', name) if match: return match.group(1), int(match.group(2)) ...
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from datetime import datetime def footer_datetime(timestamp: str) -> datetime: """Takes an embed timestamp and returns a timezone-aware datetime object.""" return datetime.fromisoformat(timestamp)
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from math import sqrt, exp, pi def gaussian(x, mean, var): """Given the mean and variance of a 1-d gaussian, return the y value for a given `x` value. .. math:: \\frac{1}{\\sigma\\sqrt{2\\pi}}e^{-\\frac{1}{2}(\\frac{x-\\mu}{\\sigma})^2} """ denom = sqrt(2*pi*var) num = exp(-((x-mean)**2)/(2*var))...
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def get_modified_path(originalPath): """Modifies the sentence's string so it can be used as a path""" return "".join(c for c in originalPath if c.isalpha())
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def template_range(value): """Return a range 1..value""" try: value = int(value) except: value = 0 return range(1, value + 1)
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import os def remove_empty_file(_files): """Return only non empty files.""" return [_file for _file in _files if os.path.getsize(_file.abspath) > 0]
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def v6_int_to_packed(address): """Represent an address as 16 packed bytes in network (big-endian) order. Args: address: An integer representation of an IPv6 IP address. Returns: The 16-byte packed integer address in network (big-endian) order. Raises: ValueError: If address is...
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from typing import List def pascal_row(n: int) -> List[int]: """Returns n-th row of Pascal's triangle""" result = [1] x, numerator = 1, n for denominator in range(1, n // 2 + 1): x *= numerator x = int(x / denominator) result.append(x) numerator -= 1 if n & 1 == 0: ...
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def tokenizer(x): """ Trivial tokenizer """ return x
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def split_into_rgb_channels(image): """ Split the target image into its red, green and blue channels. image - a numpy array of shape (rows, columns, 3). output - three numpy arrays of shape (rows, columns) and dtype same as image, containing the corresponding channels. """ red = ima...
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import argparse def parse_args(): """Parse input arguments.""" parser = argparse.ArgumentParser(description="") parser.add_argument("--det", dest="detections_file_path", nargs="+", required=True, help="File with detector output.") parser.add_argument("--gt", dest="ground_truth_...
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def get_active_units(json): """ID and return only active unit IDs.""" units = [] for unit in json: if unit['deactivated'] is None and unit['sensor_device_id'].startswith('99000512'): print(unit['sensor_device_id']) units.append({ 'unit_id': unit['sensor_device...
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def binary_to_decimal(binary): """Converts a binary number(str) into a decimal(int)""" reversed_binary = binary[::- 1] # i = corresponds to power of 2 when reversed decimal = 0 # keep track of sum for i, value in enumerate(reversed_binary): if value == "0": continue # ignore 0 ...
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def short_hex(value): """ Convert to a nice hex number without the 0x in front to save screen space :param value: value :return: short string hex representation """ hex1 = hex(value) hex2 = hex1[2:] if len(hex2) == 1: hex2 = "0" + hex2 return hex2
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def find_subtractive_combinations(string): """ Finds subtractive combination pairs in string. PARAMETERS: string : str RETURNS: ( (str pair, int index), ... ) Tuple containing all ordered subtractive combination pairs found and the respective index at which they start """ ivxlc...
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def swap_columns(a, b, array): """ Function that swaps columns of a given matrix :param a: int :param b: int :param array: numpy array :return: array_swapped: numpy array with the columns swapped """ array_swapped = array.copy() array_swapped[:, a] = array[:, b] array_swapped[:, ...
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import string import random def random_string(length): """Generate random string of the given length.""" pool = string.ascii_letters + string.digits return "".join(random.choice(pool) for _ in range(length))
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