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def xor(array, *lists): """Creates a list that is the symmetric difference of the provided lists. Args: array (list): List to process. *lists (list): Lists to xor with. Returns: list: XOR'd list. Example: >>> xor([1, 3, 4], [1, 2, 4], [2]) [3] .. versiona...
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import math def rotation_matrix_xyz(rotation_angles): """ Converts given rotation angles to a rotation represented by the sequences of rotations around XYZ with given angles """ rad_angles = [math.radians(x) for x in rotation_angles] x_angle = rad_angles[0] y_angle = rad_angles[1] z_angl...
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def _guess_header(info): """Add the first group to get report with some factor""" value = "group" if "metadata" in info: if info["metadata"]: return ",".join(map(str, info["metadata"].keys())) return value
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import torch def weighted_loss(loss, weights): """ Weighted loss """ if weights is not None: return torch.mean(weights * loss) else: return torch.mean(loss)
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def pot_LJ_dl(r): """Dimensionless Lenard Jones potential, based on distances""" r = r**-6 # Possibly improves speed u = 4*(r**2 - r) return u
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import sys import os import subprocess def supports_color(): """ Returns True if the running system's terminal supports color, and False otherwise. """ plat = sys.platform supported_platform = plat != 'Pocket PC' and (plat != 'win32' or 'ANSICO...
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def fit_model(model, callbacks_list, sequence, outseq, n_epoch): """ Make RAENN model Parameters ---------- model : keras.models.Model RAENN model to be trained callbacks_list : list List of keras callbacks sequence : numpy.ndarray Array LC flux times, values and err...
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def get_named_object(pathspec): """Return a named from a module. """ parts = pathspec.split('.') module = ".".join(parts[:-1]) mod = __import__(module, fromlist=parts[-1]) named_obj = getattr(mod, parts[-1]) return named_obj
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def convert_percentage_number(decimal_percentage: float) -> str: """ Convert a decimal percentage in a hundred percentage the percentage generated won't have fraction part For example: ``` convert_percentage_number(0.1) # 10 convert_percentage_number(0.05) # 5 convert_percentage_number...
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def validate_passport_star1(passport): """ Validate a single passport against required keys. returns 1 if valid otherwise 0 """ required_keys = ['byr', 'iyr', 'eyr', 'hgt', 'hcl', 'ecl', 'pid'] for key in required_keys: if passport.get(key) == None: return False return True
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def twoSum(nums, target): """ :type nums: List[int] :type target: int :rtype: List[int] """ lstep, rstep = 0, 0 for i in nums: lstep += 1 rstep = 0 for j in nums[::-1]: rstep += 1 if (lstep + rstep) > len(nums): break ...
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def get_formatted_emg(emg_row): """ :param emg_row: dict [str] one row that represent data from Electromyograph sensor example: ['2018-07-04T17:39:53.743240', 'emg', '-1', '-6', '-9', '-9', '1', '1', '-1', '-2', '2018-07-04T17:39:53.742082'] :return: formatted emg row example: ['2018-07-...
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def sort_words(words): """this function will sort words Args: words ([string]): [the string to sort] """ return sorted(words)
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import os import sys def get_package_dir(value): """Get package directory""" package_dir = os.path.split(value)[0] if package_dir not in sys.path: sys.path.append(package_dir) return package_dir
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def getElementByName(cgx,name): """ get Element json object by using the element name """ res = cgx.get.elements() if not res.cgx_status: print(res.cgx_content) raise ValueError(f"Can't retrieve element {name}") for item in res.cgx_content["items"]: if item["name"] == nam...
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def train_test_split(x, y=None, test_ratio=0.2): """ Returns x_train, y_train, x_test, y_test """ train_size = int(len(x) * (1.0 - test_ratio)) if y is not None: return x[:train_size], y[:train_size], x[train_size:], y[train_size:] else: return x[:train_size], x[train_size:]
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def split_into_lines(text, split_tag='\n', len_upper_limit=800, is_skip_empty=True): """ 使用指定分隔符来分句 :param text: 原文本 :param split_tag: 分隔符 :param len_upper_limit: 句子长度的最大上限,并且保证句子的完整性 :param is_skip_empty: 是否跳过空行 :return: 句子列表 """ start = 0 spans = [] lines = [] text_spli...
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from typing import OrderedDict def get_companies(dbconnection, args): """ Return an ordered dictionary of information from the company table. The key is the db key """ print('Companies') cursor = dbconnection.cursor() cursor.execute('SELECT * FROM Companies') row = cursor.fetchone() ...
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def pear2(y_obs,y_mod): """ calculates squared Pearson correlation coeffcient Examples -------- >>> # Create some data >>> y_obs = np.array([12.7867, 13.465, 14.1433, 15.3733, 16.6033]) >>> y_mod = np.array([12.8087, 13.151, 14.3741, 16.2302, 17.9433]) >>> # calculate Squared Pears...
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def code() -> str: """ Example G-code module, a drawing of a crocodile. Please simulate first, before milling. """ return """ G91 G17 G3 X20 Y0 I10 J0 G0 X40 Y0 G3 X6 Y0 I3 J0 G0 X0 Y3 G3 X-3 Y3 I-3 J0 G0 X-40 Y0 G2 X0 Y6 I0 J3...
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import re def remove_none_alphanumeric(string): """ remove non-alphanumeric characters """ pattern = re.compile("[\W_]+", re.UNICODE) return pattern.sub("", string)
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def map_values(map_fn, dictionary): """Returns a dictionary whose values have been transformed by map_fn. """ return {k: map_fn(v) for k, v in dictionary.items()}
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def v1(ss): """ soma de variavel, mas já está declarada """ ss += 1 if ss == 100: try: input(f"Atingiu {ss} vez!") # yield ss return 0 except KeyboardInterrupt: print('\nObrigado por usar nosso programa teste!') return -...
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def create_poll(poll_options: list) -> dict: """ Creates a poll of a list of options :param poll_options: :return: """ poll_opts_map = {} for opt in poll_options: poll_opts_map.update({opt.lstrip(" ").rstrip(" "): 0}) return poll_opts_map
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import re def loads(hesciiStr, prefix='x'): """ Takes a hescii-encoded string and returns the utf-8 byte string. Args: hesciiStr: a hescii-encoded string prefix: string used to prefix all encoded hex values. Default 'x' Returns: A utf-8 byte string """ ...
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def compute_xy_position_bin_inds(xy, bin_size): """Converts xy values to position bin indices assuming that the first bin edge starts at 0. :param xy: numpy.array position coordinate values :param float bin_size: size of a bin :return: same shape as xy, but values referring to bin indices :rtyp...
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def is_ip(s): """ Check a string whether is a legal ip address. :type s: string :param s: None ======================= :return: **Boolean** """ try: tmp_list = s.split(':') s = tmp_list[0] if s == 'localhost': return True tmp_list = s....
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def _make_package(x): """Get the package name and drop the last '.' """ package = '' for p in x: package += p[0] + p[1] if package and package[-1] == '.': package = package[:-1] return package
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def _conv(n): """Convert a node name to a valid dot name, which can't contain the leading space""" if n.startswith(' '): return 't_' + n[1:] else: return 'n_' + n
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def val_or_none_key(getter_fcn): """Wraps getter_fcn, returning a key that is a tuple of (0 or 1, val) where val=getter_fcn(obj), and the int is 0 if val is None.""" def result_key_fcn(obj): val = getter_fcn(obj) n = 0 if val is None else 1 return n, val return result_key_fcn
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def strip_diagnostics(tracks): """Remove diagnostic information from a tracks DataFrame. This returns a copy of the DataFrame. Columns with names that start with "diag_" are excluded.""" base_cols = [cn for cn in tracks.columns if not cn.startswith('diag_')] return tracks.reindex(columns=base_cols)
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def make_token(name, value=''): """Make a token with name and optional value.""" return {'name': name, 'value': value}
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def convert_frac(ratio): """ Converts ratio strings into float, e.g. 1.0/2.0 -> 0.5 """ try: return float(ratio) except ValueError: num, denom = ratio.split('/') return float(num) / float(denom)
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def k8s_url(namespace, kind, name=None): """ Construct URL referring to a set of kubernetes resources Only supports the subset of URLs that we need to generate for use in kubespawner. This currently covers: - All resources of a specific kind in a namespace - A resource with a specific name ...
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def fixxpath(root, xpath): """ElementTree wants namespaces in its xpaths, so here we add them.""" namespace, root_tag = root.tag[1:].split("}", 1) fixed_xpath = "/".join(["{%s}%s" % (namespace, e) for e in xpath.split("/")]) return fixed_xpath
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def inverse(upper, lower): """inverse Solve inversion matrix by solving upper and lower matrix :param upper: upper triangular matrix :param lower: lower triangular matrix :return: inversion matrix """ # solve y: Ly=B n = len(lower) y = [] for i in range(n): y.append([0] *...
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def _pad_vocabulary(vocab, math): """ Pads vocabulary to a multiple of 'pad' tokens. Args: vocab (list): list with vocabulary math (str): Math precision. either `fp_16`, `manual_fp16` or `fp32` Returns: list: padded vocabulary """ if math == "fp16": pad = 8 ...
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def convert_r_groups_to_tuples(r_groups): """ Converts a list of R-Group model objects to R-Group tuples""" return [r_group.convert_to_tuple() for r_group in r_groups]
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def number_strip(meaning): """ strips numbers from the meaning array :param meaning: array :return: stripped list of meaning """ integer_array = ['0', '1', '2', '3', '4', '5', '6', '7', '8', '9'] returnVal = [] flag = False for everyWord in meaning: for everyChar in everyWord...
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def is_assessor_type(obj_type): """ Function to return if type is assessor. :param obj_dict: dictionary to describe XNAT object parameters :return: boolean """ _okeys = list(obj_type.keys()) return 'xsiType' in _okeys or 'procstatus' in _okeys
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import re def domain(url): """Get domain from url. Domain must start with ``http://``, ``https://`` or ``/``. Parameters ---------- url: str URL to parse to extract the domain. Raises ------ ValueError If the URL pattern is invalid. Examples -------- ...
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import re def filter_eligible_words(df, lowerbound_absolute, upperbound_relative): """ Keep only the words that appear enough time but not too often. df : a dataframe with two column [cote, tokens] cote : the cote of the document tokens : the liste of preprocessed tokens lowerbound...
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def cindex_rlscore_reference(Y, P): """ Function taken from the rlscore package: https://github.com/aatapa/RLScore as reference. """ correct = Y predictions = P assert len(correct) == len(predictions) disagreement = 0. decisions = 0. for i in range(len(correct)): for j in ran...
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def covariance(datapoints, num_features, mean_feature_vector_for_c): """ Calculates the Covariance Matrix that is needed for each cluster of data. The covariance matrix is calculated as described by the Fisher Score PDF for the project :param datapoints: datapoints in cluster :param num_features: n...
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def scale(x, s): """Scales x by scaling factor s. Parameters ---------- x : float s : float Returns ------- x : float """ x *= s return x
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def _clean_size_(bf,smin=0): """ This function cleans the nested ROI structure by merging small regions into their parent bf = _clean_size_(bf,smin) Parameters ---------- bf the hroi.NROI to be cleaned smin=0 the minimal size for ROIs Results ------- bf the cleaned hroi.NR...
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def pop_sort(pop): """ This function sorts the population based on their fitnesses, using selection sort. pop: The population that are sorted based on their fitnesses. """ for i in range(len(pop)): min_index = i for j in range(i+1, len(pop)): if pop[min_index].fitnes...
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def subverParseClient(s): """return the client name given a subversion string""" return s[1:].split(":")[0]
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import csv def input_thresholds(name_moderate, name_good): """ Generates from a .csv file the dictionary of reference profiles and thresholds. :param name_moderate: Name of the .csv file which must contain on the first line the names of the criteria and on the following lines, for each criterion,...
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import numpy def slowness2vel(slowness, tol=10 ** (-8)): """ Safely convert slowness to velocity. Almost 0 slowness is mapped to 0 velocity. Parameters: * slowness : array The slowness values * tol : float Slowness < tol will be set to 0 velocity Returns: * velocit...
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import requests def get_all_service_groups(asa): """ This function retrieves all service groups from ASA :param asa: ASA device which to retrieve the objects from ASA :return: Returns list of service objects. """ url = asa.url() + "/api/objects/networkservicegroups" headers = { 'C...
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import math def genVector(width, height, x_mult=1, y_mult=1): """Generates a map of vector lengths from the center point to each coordinate widht - width of matrix to generate height - height of matrix to generate x_mult - value to scale x-axis by y_mult - value to scale y-axis by """ cen...
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from typing import List def _get_extent(bounds: List[float], offset_x: float, offset_y: float) -> List[float]: """Get extent of image without collar """ minx, miny, maxx, maxy = bounds minx = minx + (abs(minx) % offset_x) miny = miny - (miny % offset_y) + offset_y maxx = maxx ...
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def get_indexes(lst, sub_lst, compare_function=None): """Return the indexes of a sub list in a list. :param lst: the list to search in :param sub_lst: the list to match :param compare_function: the comparaison function used :type lst: list :type sub_lst: list :type compare_function: functi...
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def _join_modules(module1, module2): """Concatenate 2 module components. Args: module1: First module to join. module2: Second module to join. Returns: Given two modules aaa.bbb and ccc.ddd, returns a joined module aaa.bbb.ccc.ddd. """ if not module1: return module2 if not module2: ...
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def from_723(u: bytes) -> int: """Convert from ISO 9660 7.2.3 format to uint16_t Return the little-endian part always, to handle non-specs-compliant images. """ return u[0] | (u[1] << 8)
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import base64 def decode_textfield_base64(content): """ Decodes the contents for CIF textfield from Base64. :param content: a string with contents :return: decoded string """ return base64.standard_b64decode(content)
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from typing import Any def default_key(obj: object, key: str, default: Any = None) -> Any: """Get value by attribute in object or by key in dict. If property exists returns value otherwise returns `default` value. If object not exist or object don't have property returns `default`. Args: obj...
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def _get_lua_base_module_parts(base_path, base_module): """ Get a base module from either provided data, or from the base path of the package Args: base_path: The package path base_module: None, or a string representing the absence/presence of a base module override ...
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import configparser def read_ini(src_filename): """ read configs in ini file :param src_filename: source file path :return: parsed config data """ config = configparser.ConfigParser() config.read(src_filename) return config
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def broken_bond_keys(tra): """ keys for bonds that are broken in the transformation """ _, _, brk_bnd_keys = tra return brk_bnd_keys
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def formatSchool(school): """The name of the school where a thesis was written. """ return school
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def named_field(key, regex, vim=False): """ Creates a named regex group that can be referend via a backref. If key is None the backref is referenced by number. References: https://docs.python.org/2/library/re.html#regular-expression-syntax """ if key is None: # return regex ...
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def c1c2_deriv (h2o, co2, c, m): """ calculate derivatives for c1, c2 needed for density equation !!! chain rule extravaganza !!! """ c1 = c['c1'] c2 = c['c2'] dc1 = {} dc2 = {} # derivatives for c1 c1_2 = c1*c1 dc1['dp'] = c1_2*(h2o['dp'] + co2['dp'] )...
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def _generate_qasm(gate_list, n_qubits, gate_options={1: "x", 2: "cx"}): """Convert a list of gates into a QASM string. Args: gate_list (list[(int, (int, int))]): The list of gates representing the current circuit. n_qubits (int): The number of nodes in the graph. gate_optio...
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def prepro(I): #where I is the single frame of the game as the input """ prepro 210x160x3 uint8 frame into 6400 (80x80) 1D float vector """ #the values below have been precomputed through trail and error by OpenAI team members I = I[35:195] #cropping the image frame to an extent where it contains on the pad...
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import os def base_filename(path): """Returns the filename without the extension from the path""" return os.path.splitext(os.path.basename(path))[0]
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import torch def _set_finite_diff_coeffs(ndim, dx, device, dtype): """Calculates coefficients for finite difference derivatives. Currently only supports 4th order accurate derivatives. Args: ndim: Int specifying number of dimensions (1, 2, or 3) dx: Float Tensor containing cell spacing i...
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def build_regex(pattern, pattern_name=None, **kwargs): """ Return regex string as a named capture group. See: https://tonysyu.github.io/readable-regular-expressions-in-python.html """ pattern = pattern.format(**kwargs) if pattern_name is not None: return r'(?P<{name}>{pattern})'.format(...
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def number_of_patients(dataset, feature_files, label_files): """ Calculates number of unique patients in the list of given filenames. :param dataset: string. Dataset train/val/test. :param feature_files: list of strings. List of filenames with patient names containing features. :param label_files: ...
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def invert_dict(dic, sort=True, keymap={}, valmap={}): """Inverts a dictionary of the form key1 : [val1, val2] key2 : [val1] to a dictionary of the form val1 : [key1, key2] val2 : [key2] Parameters ----------- dic : dict Returns ----------- dict """ dic_...
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from decorator import decorate from decorator import FunctionMaker def _decorate_polyfill(func, caller): """ decorate(func, caller) decorates a function using a caller. """ try: return decorate(func, caller) except ImportError: evaldict = dict(_call_=caller, _func_=func) fu...
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def extractLESYT(item): """ LESYT DISABLED """ return None
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def _mangle_recipients(name, *args): """Modify the recipient address if it's the same as alias to prevent mail forwarding loops Ref: https://serverfault.com/questions/471604/ """ input_args = [] # Flatten the input list for sublist in list(args): for item in sublist: in...
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def insertStyles(htmlCode, stylesheet, name): """We break up the HTML code into a list""" """and insert the styles.""" htmlList = htmlCode.split('\n') preamble = [ '<!DOCTYPE html>', '<html>', '<head>', '<link rel="stylesheet" href="' + stylesheet + '"/>', '<title>' + name + '</...
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def byte_ord(b): """ Return the integer representation of the byte string. This supports Python 3 byte arrays as well as standard strings. """ try: return ord(b) except TypeError: return b
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import yaml def yaml2config(yaml_path): """ convert yaml to dict config. """ final_configs = [] f = open(yaml_path, 'r') origin_configs = yaml.load(f, Loader=yaml.FullLoader) f.close() for configs in origin_configs: configs = configs['DistillConfig'] final_configs.e...
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def protolinks_simple(proto, url): """ it converts url to html-string using appropriate proto-prefix: Uses for construction "proto:url", e.g.: "iframe:http://www.example.com/path" will call protolinks() with parameters: proto="iframe" url="http://www.example.com/path"...
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import re def parse_time(time_string) -> int: """ Parse a time stamp in seconds (default) or milliseconds (with "ms" unit) The "s" unit is optional and implied if left out. Args: time_string(str): timestamp, e.g., "0.23s", "5.234" (implied s), "1234 ms" must be a number followed b...
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import base64 def get_base64encode(arg): """ @summary: 获取唯一的base64编码值 --------- --------- @result: 字符串 """ if not isinstance(arg, bytes): arg = bytes(arg, encoding="utf-8") result = str(base64.b64encode(arg), encoding="utf-8") return result
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def clean_character(dataframe): """ clean special characters """ dataframe['clean_text'] = dataframe['clean_text'].str.lower().str.replace("[^a-zA-Z#]", " ") return dataframe
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def confidence_intervals_overlap(old_score, old_ci, new_score, new_ci): """Returns true if the confidence intervals of the old and new scores overlap, false otherwise. """ if old_score < new_score: old_score += old_ci new_score -= new_ci return old_score >= new_score else: ...
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def n_ary(logical): """ @type: logical: LogicalExpression @rtype: str """ return "{name}({terms})".format( name=type(logical).__name__, terms=", ".join(logical) )
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def get_insert_size_list(sv_record, bam_file, ref_flank): """ Get a list of insert sizes over an SV. :param sv_record: SV record. :param bam_file: BAM file to extract reads from. :param ref_flank: Number of bases upstream and downstream of the SV that should be considered. This value should ...
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def get_expected_num_audio_channels( ambisonics_type, ambisonics_order, head_locked_stereo): """ Returns the expected number of ambisonic components for a given ambisonic type and ambisonic order. """ head_locked_stereo_channels = 2 if head_locked_stereo == True else 0 if (ambisonics_type ==...
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def data2str(data): """ Convert some data to a string. An empty or None value is returned unchanged (helpful for testing), e.g.: '57 75 6e 64 65 72 62 61 72 49 52' -> 'WunderbarIR' '' -> '' """ if not data: return data text = ''.join([chr(int(v, 16)) for v in data.split()]) return ...
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import re def get_task_args_and_kwargs(file_path): """Get the args and kwargs for the task.""" text = '' with open(file_path, 'r') as f: for line in f: text += line.strip() + ' ' reg = re.search('Task was called with args: (\(.*?\)) ' 'kwargs: ({.*?})', text) ...
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def get_lower_dm_limit(dm_trials, dm_min=None): """ 'dm_min' is the minimum DM enforced by the user """ if dm_min is not None: return dm_min else: return min(dm_trials)
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def to_milliseconds(days): """ :return: the number of days expressed as milliseconds. e.g to_milliseconds(1) -> 86400 """ return days * 24 * 60 * 60 * 1000
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import os def path_relative(rel: str) -> str: """Converts path relative to this file to absolute path""" this_dir = os.path.dirname(__file__) return os.path.join(this_dir, rel)
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import yaml def gen_lookup(file): """ Generating the lookup table between api-endpoints and elasticsearch instances from the configuration of the lod-api. lookup table is of the form: {"/api/endpoint": "http://elasticsearchhost:port/index/doctype", "/resource": "http://el...
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def get_global_host(config, name): """ find global host in config with its name and return it """ for host in config['hosts']: if host['name'] == name: return host return None
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from typing import Any def default_tile_extras_provider(hyb: int, ch: int, z: int) -> Any: """ Returns None for extras for any given hyb/ch/z. """ return None
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import subprocess def run_prog (pargs): """ Runs executable program with arguments. Returns status along with stdout and stderr """ ret = subprocess.run(pargs, stdout = subprocess.PIPE, stderr = subprocess.PIPE, check=False) retc = ret.returncode output = None errors = None if re...
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from typing import Dict from typing import Any def copa_preformat_fn(ex: Dict[str, Any]) -> Dict[str, Any]: """format for COPA tasks. Args: ex: Dictionary with one sample Returns: ex: Formatted dictionary """ premise, question = ex['premise'].decode(), ex['question'].decode() input_prompt = f'{p...
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def bfs(G, s, f): """ Breadth-first search :param G: The graph object :param s: The start node :param f: The goal node :return: The explored set """ explored, frontier = [], [s] while frontier: v = frontier.pop(0) if v == f: pass else: ...
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def vec_rotate(vec, direction): """direction: 'R' or 'L' """ if direction == "L": # (1, 13) -> (-13, 1) return (-vec[1], vec[0]) else: # (-13, 1) -> (1, 13) return (vec[1], -vec[0])
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import sys def load_class(location): """ Take a string of the form 'fedmsg.consumers.ircbot:IRCBotConsumer' and return the IRCBotConsumer class. """ try: mod_name, cls_name = location.strip().split(':') except ValueError: raise ImportError('Invalid import path.') __import__(mo...
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import copy def norm_rda_deficit(norm_rda_arr): """ Returns a modified list of nutrient dicts in which value represents a fraction of how much a given nutrient has been satisfied. A value of 0 represents full satisfaction, and 1 represents no satisfaction. """ r_nut = copy.deepcopy(norm_rda_arr) ...
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def add_dicts(*args): """ Combine dicts. If there are duplicate keys, raise an error. """ new = {} for arg in args: for key in arg: if key in new: raise ValueError("Duplicate key: %r" % key) new[key] = arg[key] return new
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