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import re def check_english_str(string): """ 检测英文字符串 """ pattern = re.compile('^[A-Za-z0-9.,:;!?()_*"\',。 ]+$') if pattern.fullmatch(string): return True else: return False
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def subtract(fml1, fml2): """ the difference between two molecular formulas """ atms = set(fml1) | set(fml2) diffs = {} for atm in atms: cnt1 = fml1[atm] if atm in fml1 else 0 cnt2 = fml2[atm] if atm in fml2 else 0 if cnt1 != cnt2: diffs[atm] = cnt1 - cnt2 ret...
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def createECGGraph(df, plot_index, ecg_class, mi_class): """ Method to create the line plot graph object @param df - The intermediate dataframe with predicted classes @param plot_index - The index of the data file to be plotted @param ecg_class - The ecg calss identified for the index being plotted ...
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def finalize_model(input_model): """ Extracts string from the model data. This function is always the last stage in the model post-processing pipeline. :param input_model: Model to be processed :return: list of strings, ready to be written to a module file """ finalized_output = [] for m...
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from typing import OrderedDict def load_object(worksheet): """ Converts worksheet to dictionary Args: object: worksheet Returns: object: dictionary """ #d = {} #d = OrderedDict() d = OrderedDict() for curr_col in range(0, worksheet.ncols): liste_elts = work...
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import base64 def fast_execute_script(client): """ 快速执行脚本函数 """ script_content = base64.urlsafe_b64encode(b"df -h /|sed '1d'|awk '{print $5}'|sed 's/%//g'|sed -n 1p") script_param = base64.urlsafe_b64encode(b'/') ip_list = [ { "bk_cloud_id": 0, "ip": "10.0.1...
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def obj_to_list(sa_obj, field_order): """Takes a SQLAlchemy object - returns a list of all its data""" return [getattr(sa_obj, field_name, None) for field_name in field_order]
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import re def join_subtraction(text): """Merges lines that are separated because of a line starting with dash, when it's actually a subtraction. Args: text (string): markdown text that is going to be processed. Returns: string: text once it is processed. """ subtraction_regex = re.compile(r'(\d) *\n+ *(-...
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def valid_answer(response, acceptable, statement): """Check value and iterate until valid or too many attempts. :param response: response from user :param acceptable: tuple or list; acceptable values :param statement: string; response to...
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import copy def _parse_params(params, default_params): """Parses parameter values to the types defined by the default parameters. Default parameters are used for missing values. """ # Cast parameters to correct types if params is None: params = {} result = copy.deepcopy(default_params) for key, valu...
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def div(n): """ Just divide """ res = 10 / n return res
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def solr_url(): """Return Solr URL.""" return 'solr://127.0.0.1:8983/solr'
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from typing import Dict import sys import platform import pkg_resources def get_system_spec() -> Dict[str, str]: """Collect information about the system and installation.""" if sys.platform == 'darwin': system_info = 'macOS {} {}'.format( platform.mac_ver()[0], platform.archite...
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def _detJ_3D(J): """ manually compute determinant of 3x3 matrices in J format """ detJ = J[:,0,0,:] * (J[:,1,1,:] * J[:,2,2,:] - J[:,2,1,:] * J[:,1,2,:]) \ - J[:,1,0,:] * (J[:,0,1,:] * J[:,2,2,:] - J[:,2,1,:] * J[:,0,2,:]) \ + J[:,2,0,:] * (J[:,0,1,:] * J[:,1,2,:] - J[:,1,1,:] * J[:,0,2,...
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def resize_egomotion(egomotion, target_size): """Transforms camera egomotion when the image is resized. Args: egomotion: a 2-d transformation matrix. target_size: target size, a tuple of (height, width). Returns: A 2-d transformation matrix. """ del target_size # unused return egomotion
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def getConstructors(jclass): """Returns an array containing Constructor objects reflecting all the public constructors of the class represented by this Class object.""" return jclass.class_.getConstructors()[:]
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def ask_move(player: int) -> int: """Ask the player which pawn to move. Returns an integer between 0 and 3.""" while True: try: pawn_number = int(input(f"Player {player}: Choose a piece to move (0-3): ")) except ValueError: continue else: if 0 <= paw...
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def calc_mean_dists(Z, node_index, out_mean_dists): """ Calculates the mean density of joins for sub-trees underneath each node """ N = Z.shape[0] + 1 # number of leaves left_child = int(Z[node_index, 0] - N) right_child = int(Z[node_index, 1] - N) if left_child < 0: left_ave...
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def strip_outer_whitespace(text): """Strip surrounding blank lines in a multiline string. This does not affect first-line indentation, or trailing whitespace on the last line. """ lines = text.rstrip().splitlines() i = 0 try: while not lines[i].strip(): i += 1 except...
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import os def locate_file(file_name: str, executing_file: str) -> str: """ File must exist :type file_name: str|unicode :type executing_file: str|unicode :return: str """ # if executing_file is None: # executing_file = __file__ file_path = os.path.join( os.path.dirname(...
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def find(arr, icd_code=False): """Search in the first column of `arr` for a 'Yes' and return the respective entry in the second column.""" search = [str(item) for item in arr[:,0]] find = [str(item) for item in arr[:,1]] try: idx = [i for i,item in enumerate(search) if "Yes" in item] ...
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from typing import IO def open_file_or_stream(fos, attr, **kwargs) -> IO: """Open a file or use the existing stream. Avoids adding this logic to every function that wants to provide multiple ways of specifying a file. Args: fos: File or stream attr: Attribute to check on the ``fos`` ob...
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def find_max_sub(l): """ Find subset with higest sum Example: [-2, 3, -4, 5, 1, -5] -> (3,4), 6 @param l list @returns subset bounds and highest sum """ # max sum max = l[0] # current sum m = 0 # max sum subset bounds bounds = (0, 0) # current subset start s = 0 ...
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def _index_to_bitstring(index, n, big_end=False): """Transfor the index to bitstring""" s = bin(index)[2:].zfill(n) if big_end: return s[::-1] return s
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def sanitize_path(path): """ This applies only to Windows paths. """ return path.translate(None, r'<>"/|?*' + ''.join(map(chr, range(0, 31))))
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def as_paired_ranks(x, y): """return as matrix of paired ranks""" n = len(x) paired = list(zip(x, y)) x = list(x) y = list(y) x.sort() y.sort() rank_val_map_x = dict(list(zip(x, list(range(n))))) rank_val_map_y = dict(list(zip(y, list(range(n))))) ranked = [] for i in range(n...
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def f_W(m_act, n, Wint): """ Calculate shaft power """ return m_act * n - Wint
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def _formatDict(d): """ Returns dict as string with HTML new-line tags <br> between key-value pairs. """ s = '' for key in d: new_s = str(key) + ": " + str(d[key]) + "<br>" s += new_s return s[:-4]
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from typing import List def clusters_list(num_clusters: int) -> List[list]: """Create a list of empty lists for number of desired clusters. Args: num_clusters: number of clusters to find, we will be storing points in these empty indexed lists. Returns: clusters: empty list of lists. ...
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def number_format(num, places=0): """Format a number with grouped thousands and given decimal places""" places = max(0,places) tmp = "%.*f" % (places, num) point = tmp.find(".") integer = (point == -1) and tmp or tmp[:point] decimal = (point != -1) and tmp[point:] or "" count = 0 formatted = ...
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import pandas def format_dates(df, columns): """Convert UNIX timestamp columns to datetime""" if df.size > 0: df[columns] = df[columns].apply(lambda v: pandas.to_datetime(v, unit="s")) return df
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def unflatten(structure, schema): """doc""" start = 0 res = [] for _range in schema: res.append(structure[start:start + _range]) start += _range return res
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def get_cdm_cluster_location(self, cluster_id): """Retrieves the location address for a CDM Cluster Args: cluster_id (str): The ID of a CDM cluster Returns: str: The Cluster location address str: Cluster location has not be configured. str: A cluster with an ID of {cluster_id...
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import random def _paired_random_crop(img_gts, img_lqs, h_patch, w_patch, if_center=False): """Apply the same cropping to GT and LQ image pairs. scale: cropped lq patch can be smaller than the cropped gt patch. List in, list out; ndarray in, ndarray out. """ if not isinstance(img_gts, list): ...
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def is_session_dir(path): """Return whether a path is a session directory. Example of a session dir: `/path/to/root/mainenlab/Subjects/ZM_1150/2019-05-07/001/` """ return path.is_dir() and path.parent.parent.parent.name == 'Subjects'
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import re def safeStripPort(address): """ Strip port from address\n Properly strips on IPv6, IPv4, and FQDN addresses :param address: address to strip port from :type address: str :return: address with port stripped :rtype: str """ match = re.searc...
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import torch def isinf(input): """ In ``treetensor``, you can test if each element of ``input`` is infinite (positive or negative infinity) or not. Examples:: >>> import torch >>> import treetensor.torch as ttorch >>> ttorch.isinf(torch.tensor([1, float('inf'), 2, float('-inf...
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def coalesce(*xs): """ Coalescing monoid operation: return the first non-null argument or None. Examples: >>> coalesce(None, None, "not null") 'not null' """ if len(xs) == 1: xs = xs[0] for x in xs: if x is not None: return x return None
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def first(it): """Return first element in iterable.""" return it.next()
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import platform def islinux(): """Returns true if host OS is Linux.""" return "linux" in platform.platform().lower()
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from typing import Callable def curry_explicit(func: Callable, arity: int) -> Callable: """ Transforms function from several arguments to function that takes arguments sequentially, for example: f(a, b, c, d) -> f(a)(b)(c)(d) """ def inner_fun(*args) -> Callable: if len(args) == arity: ...
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def get_valid_scaler_class(): """Return list of implemented xscaler objects.""" scaler_classes = ['GlobalStandardScaler', 'TemporalStandardScaler', 'GlobalMinMaxScaler', 'TemporalMinMaxScaler', 'SequentialScaler'] return scaler_classes
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def quicksort(arr): """ Fuction to do quicksort. :param arr: A list of element to sort. """ less = [] pivotList = [] more = [] if len(arr) <= 1: return arr else: pivot = arr[0] for i in arr: if i < pivot: less.append(i) ...
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import re def __is_rut_perfectly_formatted(rut: str) -> bool: """ Validates if Chilean RUT Number is perfectly formatted Args: rut (str): A Chilean RUT Number. For example 5.126.663-3 Returns: bool: True when Chilean RUT number (rut:str) is perfectly formatted ** Only valida...
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def ru(value, quantitative): """возвращает строку со склоненным существительным""" if value % 100 in (11, 12, 13, 14): return quantitative[2] if value % 10 == 1: return quantitative[0] if value % 10 in (2, 3, 4): return quantitative[1] return quantitative[2]
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import os def get_rcfilename(): """ Returns the full path of the acmd config file. """ home = os.path.expanduser("~") rcfilename = "{home}/.acmd.rc".format(home=home) return rcfilename
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import os def choice(directory, files): """ :param directory: directory of files in. :param files: list of file be choice :return: first existed path """ for name in files: fpath = os.path.join(directory, name) if os.path.exists(fpath): return fpath return None
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import os def user_data(): """ return: location_name, crs, grass_version, main_dir, grass_dir, sen_down_dir, sen_processed_dir, subset_dir, boundary_shape self-explanatory returns, for acces through the Path classes "GrassData" and "Paths" """ #################### USER DEFINED ...
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import six def to_iter(e): """转换可迭代形式""" if isinstance(e, (six.string_types, six.string_types, six.class_types, six.text_type, six.binary_type, six.class_types, six.integer_types, float)): return e, elif isinstance(e, list): return e else: return e
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def FilterListClass(objclass,inlist,exclude=False): """ select list elements that [NOT when exclude=True] belong to (a group of) classes. Arguments: objclass --> class name or tuple of class name """ if exclude==True: return [lm for lm in inlist if not isinstance(lm,objclass)] e...
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def task_to_json_list_of_list(df_task): """ Returns a list of list (without columns name) like: [['Saint Auban', 'Go', 'Coupe S', '3 Eveches', 'DORMILLOUSE FORT', 'Saint Auban'], [44.054901123046875, 44.01508712768555, 44.0536003112793, 44.288883209228516, 44.41444778442383, 44.054901123...
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def create_single_object_response(status, object, object_naming_singular): """ Create a response for one returned object @param status: success, error or fail @param object: dictionary object @param object_naming_singular: name of the object, f.ex. book @return: dictionary. """ return {"...
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import argparse def parse_args(): """Parses arguments.""" parser = argparse.ArgumentParser( description='Train boundary with given data and labels.') parser.add_argument('data_path', type=str, help='Path to the data for training.') parser.add_argument('scores_path', type=str, ...
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def bubble_sort(iterator): """ Here’s what our Bubble sort algorithm might look like, in Python3: """ length = len(iterator) -1 is_sorted = False while not is_sorted: is_sorted = True for i in range(length): if iterator[i] > iterator[i+1]: is_sorted =...
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def _query_item(item, query_id, query_namespace): """ Check if the given cobra collection item matches the query arguments. Parameters ---------- item: cobra.Reaction or cobra.Metabolite query_id: str The identifier to compare. The comparison is made case insensitively. query_namesp...
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def num2str(x): """Converter for numeras to nice short strings. """ n = "" if x >= 0: n += "+" else: n += "" n += "{:0.1e}".format(x) return n.replace("e", "")
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import re def strip_html_tags(text): """Strip HTML tags in a string. :param text: String containing HTML code :type text: str :return: String without HTML tags :rtype: str :Example: >>> strip_html_tags('<div><p>This is a paragraph</div>') 'This is a paragraph' >>> strip_html_ta...
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import glob import re def list_all_sys_net_if(): """ List the machine's network interfaces and return their name in a list of strings \return A list of network interfaces (strings) """ sys_net_path = glob.glob('/sys/class/net/*') # Now remove the /sys/class/net prefix, keep only the interface ...
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def get_next_open_row(board, col): """ Finds the topmost vacant cell in column `col`, in `board`'s grid. Returns that cell's corresponding row index. """ n_rows = board.n_rows # check row by row, from bottom row to top row ([0][0] is topleft of grid) for row in range(n_rows - 1, -1, -1): ...
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def read_names(fh): """Read taxonomic names from a file. Parameters ---------- fh : file handle Taxon name mapping file. Returns ------- dict Taxon name map. Notes ----- Can be NCBI-style names.dmp or a plain map of ID to name. """ names = {} for li...
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import csv def proc_attendees(att_file, config): """Opens the attendee list file, reads the contents and collects the desired information (currently first name, last name and email addresses) of the actual attendees into a dictionary keyed by the lowercase email address. This collection is returned. ...
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import re def _parse_arn(arn): """ ec2) arn:aws:ec2:<REGION>:<ACCOUNT_ID>:instance/<instance-id> arn:partition:service:region:account-id:resource-id arn:partition:service:region:account-id:resource-type/resource-id arn:partition:service:region:account-id:resource-type:resource-id Returns: r...
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def get_product_linear_bias(sets, bound): """ Return the product of the input sets (1-D combinatorial) @param sets: Input sets @type sets: List @param bound: Max number of the product @type bound: Int @return: Product (partial) of the input sets @rtype: List """ # check not emp...
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def cast_uint(value): """ Cast value to 32bit integer Usage: cast_int(1 << 31) == 2147483648 """ value = value & 0xffffffff return value
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from pathlib import Path def is_subpath(parent_path: str, child_path: str): """Return True if `child_path is a sub-path of `parent_path` :param parent_path: :param child_path: :return: """ return Path(parent_path) in Path(child_path).parents
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def getIPaddr(prefix): """ Get the IP address of the client, by grocking the .html report. """ addr="Unknown" f=open(prefix+".html", "r") for l in f: w=l.split(" ") if w[0] == "Target:": addr=w[2].lstrip("(").rstrip(")") break f.close() return(addr...
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def squelch(prop_call, default=None, exceptions=(ValueError,)): """ Utility function that wraps a call (likely a lambda function?) to return a default on specified exceptions """ if not exceptions: return prop_call() try: return prop_call() except exceptions: return default
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import re def clean_text(text, max_words=None, stopwords=None): """ Remove stopwords, punctuation, and numbers from text. Args: text: article text max_words: number of words to keep after processing if None, include all words stopwords: a list of words to skip d...
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import argparse from pathlib import Path def exist_dir(): """ Check for existing directory """ class DirCheck(argparse.Action): def __call__(self, parser, args, values, option_string=None): p = Path(values) if not p.exists(): msg='Argument "{f} denoting the...
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def c_array(centroids): """ Returns new dictionary with a ready-to-copy string representation of data for use as array in C """ c_centroids = {} for label in centroids.keys(): c_centroid = str(centroids[label].tolist()).replace('[', '{') c_centroid = c_centroid.replace(']', '}') ...
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def exempt(a, b): """ exempts b from a """ if a is None: return set() if b is None: return a return set(a) - set(b)
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def check_file(fname): """ ('filepath')->file contents Opens given file path (or file name if file is in same folder as proj9) reads contents if able, and prints those contents if able. returns none >>> check_file("\\Users\\Hufflebluff\\Example.txt") Example file contents line 1 Exampl...
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def CalcUi(U2, U1): """Return the backward differencing result of the dependent var.""" return U2 - U1
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def array_value(postiion, arr): """Returns the value at an array from the tuple""" row, col = postiion[0], postiion[1] value = arr[row, col] return value
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def get_padding(ks, s, hw): """ choose padding value to make sure: if s = 1, out_hw = in_hw; if s = 2, out_hw = in_hw // 2; if s = 4, out_hw = in_hw // 4; """ if hw % s == 0: pad = max(ks - s, 0) else: pad = max(ks - (hw % s), 0) if pad % 2 == 0: return pad // 2 ...
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def generate_header_list(unsorted_keys): """Return a list of headers for the CSV file, ensuing that the order of the first four headers is fixed and the remainder are sorted.""" unsorted_keys.remove('identifier') sorted_remainder = sorted(unsorted_keys) header_list = ['identifier', 'label1', 'lab...
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def hamming_distance(str1, str2): """Calculate the Hamming distance between two bit strings Args: str1 (str): First string. str2 (str): Second string. Returns: int: Distance between strings. Raises: ValueError: Strings not same length """ if len(str1) != len(str2...
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import requests def get_all_topk_articles(day_range): """ Accepts a list of dicts with year, month, and day values Returns a dictionary (article titles as keys) with all articles that were in the topk list during those dates and the pageview counts for each of the dates the article appeare...
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def mecab_eval(sys_data, ans_data): """ This script is written by referring to the following code. https://github.com/taku910/mecab/blob/master/mecab/src/eval.cpp """ if not len(sys_data) == len(ans_data): raise AssertionError("len(sys_data) != len(ans_data)") num_sents = len(sys_data) ...
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def sync(printer, ast): """Prints a synchronization "chan(!|?)".""" channel_str = printer.ast_to_string(ast["channel"]) op_str = ast["op"] return f'{channel_str}{op_str}'
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from datetime import datetime import os def getDBBackupPath(backupDir: str) -> str: """Get a database backup path.""" timestamp = datetime.now().strftime("%Y-%m-%d_%H-%M-%S") dbFile = f"norsebooks.backup.{timestamp}.json" dbPath = os.path.join(backupDir, dbFile) return dbPath
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from typing import Union from typing import List import pickle def parse_list(data: Union[str, List], indicator: int = 0, query=['MCF7']) -> List: """Filter the data based on compound, cell line, dose or time This function takes the directory of dataset, indicator that indicates w...
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def convert_list_in_str(list_in: list) -> str: """Обособляет каждое целое число кавычками, добавляя кавычку до и после элемента списка, являющегося числом, и дополняет нулём до двух целочисленных разрядов. Формирует из списка результирующую строковую переменную и возвращает.""" str_out = "" ...
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import os def get_user_config_file(): """Returns the path where the user-level configuration file is stored""" return os.path.expanduser("~/.igraphrc")
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def list_creator(nbBins): """Create the necessary number of lists to compute colors feature extraction. # Arguments : nbBins: Int. The number of bins wanted for color histogram. # Outputs : lists: A list of 2*3*`nbBins` empty lists. """ nbLists = 2*3*nbBins return [[] for _ in ...
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def compress(string): """Creates a compressed string using repeat characters. Args: string_one: any string to be compressed. Returns: A compressed version of the input based on repeat occurences Raises: ValueError: string input is empty. """ if string: ...
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def map_squares(numbers): """ :param numbers: list of numbers :return: square of the numbers """ return list(map(lambda x: x ** 2, numbers))
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def get_flight_distance(cassandra_session, origin, dest): """Get the distance between a pair of airport codes""" # query = cassandra_session.prepare( # """ # SELECT "Distance" FROM agile_data_science.origin_dest_distances # WHERE "Origin"=? AND "Dest"=? # LIMIT 1 # ALLOW FILTERING; # """ ...
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import sys import os.path def to_posix(fname): """ Convert a path to posix-like format. :param str fname: The filename to convert to posix format. :return: The filename in posix-like format. :rtype: str """ if sys.platform == "win32": # pragma: nocover if os.path.isabs(fname): ...
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def extend_flight_distance(distance: float) -> float: """Add factor to shortest flight distance to account for indirect flight paths Following https://www.icao.int/environmental-protection/CarbonOffset/Documents/Methodology%20ICAO%20Carbon%20Calculator_v11-2018.pdf section 4.2 we add a correction factor to...
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def triwhite(x, y): """ Convert x,y chromaticity coordinates to XYZ tristimulus values. """ X = x / y Y = 1.0 Z = (1-x-y)/y return [X, Y, Z]
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import os import codecs def has_shipibo_suffix(str): """ Function that returns the possible existence of a shipo suffix in a a word :param str: word to evaluate :type str: str :returns: True or False :rtype: bool :Example: >>> import chana.lemmatizer >>>...
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def get_ode_params(**alt_params): """General Ode simulation params, not filename specific""" params = {'disableUnits': True, # disable unit checking # set sim params 'startTime': 0, 'stopTime': 30, 'timestep': 0.001, 'period': 0.1, ...
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def create_header(args): """Constructs the header row for the csv""" header = ["Propublica Number", "Org Name", "Tax Year", "Data Source", "PDF URL"] if args.totalrev: header.append("Total Revenue") if args.totalexp: header.append("Total Functional Expenses") if args.ne...
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def predict_large_image(model, input_image): """Predict on an image larger than the one it was trained on All networks with U-net like architecture in this repo, use downsampling of 2, which is only conducive for images with shapes in powers of 2. If different, please crop / resize accordingly to avoid...
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def make_subrequest(request, path): """ Make a subrequest Copies request environ data for authentication. May be better to just pull out the resource through traversal and manually perform security checks. """ env = request.environ.copy() if path and '?' in path: path_info, query_s...
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import errno import ctypes import os import logging def pid_exists(pid): """Check whether pid exists in the current process table.""" # http://stackoverflow.com/questions/568271/how-to-check-if-there-exists-a-process-with-a-given-pid if os.name == 'posix': # OS X and Linux if pid < 0: ...
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def termino_aerodinamico(tmed, vv_promedio, c_sicrometrica, p_media_vapor, pendiente_curva, c_sicrometrica_modificada, p_vapor_real): """ calcula el término aerodinámico de la ecuación de PM en mm/día param: tmed : temperatura media param: vv_promedio : velocidad del v...
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import logging def get_logger(*components) -> logging.Logger: """Get a logger under the app's hierarchy.""" name = '.'.join(['skipscale'] + list(components)) return logging.getLogger(name)
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def boto3_tag_list_to_ansible_dict(tags_list, tag_name_key_name=None, tag_value_key_name=None): """ Convert a boto3 list of resource tags to a flat dict of key:value pairs Args: tags_list (list): List of dicts representing AWS tags. tag_name_key_name (str): Value to use as the key for all tag k...
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