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import os def ev(k, v): """ev Get environment key and strip :param k: environment variable key :param v: environment variable value """ return os.getenv( k, v).strip()
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import os def get_full_pathname(name): """ Use built-in methods to create a platform-independent file path for loading and saving of files. :param name: This is the base name of the journal to be worked with. :return: The full filename string. """ filename = os.path.abspath(os.path.join('.', ...
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import subprocess def get_cmd_output(cmd, cwd=None): """Run a command and return its output as a string.""" if cwd is not None: out = subprocess.check_output(cmd, cwd=cwd) else: out = subprocess.check_output(cmd) return out.decode("utf-8").rstrip()
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import ipaddress def create_bgp_prefixes(radix): """Create a list of list of /24 prefixes.""" bgp_prefixes = list(radix) total_prefixes = [] for bgp_prefix in bgp_prefixes: bgp_prefix = bgp_prefix.prefix try: prefixes = [ p for p in ipaddres...
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def time_in_range(start, end, x): """ Return true if x is in the range [start, end] """ if start <= end: return start <= x <= end else: return start <= x or x <= end
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def get_degen_dependence_lengths2(weight_shapes, independent = False): """ same as above but assumes that one just wants one weight (the first weight per node) from each node in a layer to be sorted w.r.t. corresponding weight in other nodes. This should be enough to ensure nodes aren't degenerate. does this for we...
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def Arranjo_Repeticao(m, p): """ param m : número de elemetos distintos. \n param p : número de vezes que m é repetido. \n return : se for retornado o valor -1 quer dizer que ouve um erro. """ if p < 0 or m < 0: return -1 else: return m**p
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import posixpath def extract_version(module_name): """ extract the version number from the module name provided. :param module_name: <str> the module to find version in. :return: <int> version number. """ # module_name_v0000.py --> module_name, _v0000.py --> _v0000 return posixpath.splitex...
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def indices(lst, element): """ A function that searches for all occurrences of an element in a list """ result = [] offset = -1 while True: try: offset = lst.index(element, offset + 1) except ValueError: return result result.append(offset)
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import os def get_self_dir() -> str: """ Get the path to the directory where this script lives. """ return os.path.dirname(os.path.abspath(__file__))
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def dict_diff(dict1, dict2, by_key=False): """ Helper method to calculate difference of two dictionaries """ keys1 = set(dict1.keys() if by_key else dict1.items()) keys2 = set(dict2.keys() if by_key else dict2.items()) intersection = keys1 & keys2 return keys2 ^ intersection, intersection...
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def ask_yes_no(question): """Ask for a number within a range.""" response = None while response not in ("y", "n"): response = input(question) return response
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import configparser def get_token(): """Get token from config.ini file.""" config = configparser.ConfigParser() config.read("config.ini") return config["DEFAULT"].get("github_access_token")
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def next_greatest_letter(letters: list[str], target: str) -> str: """Returns the the smallest element in the list that is larger than the given target Args: letters: A list of sorted characters drawn from the lowercase latin alphabet that also wraps around. For example, if the t...
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def _se_isub_ ( self , other ) : """Update the counter >>> cnt = ... >>> cnt -= value """ return self.add ( -other )
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def usage(): """ Return usage text so it can be used on failed human interactions """ usage_string = """ usage: %prog [options] -H SERVER -j JOB -w WARNING -c CRITICAL Make sure the last job is successful OR the current is not stuck (LastBuild) Warning and Critical are defined...
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def same_thing(thing: object) -> object: """ post: __old__.thing == _ """ # If `thing` isn't copyable, it won't be available in `__old__`. # In this case, enforcement will fail with an AttributeError. return thing
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import math def floatToJson(x): """Custom rule for converting non-finite numbers to JSON as quoted strings: ``"inf"``, ``"-inf"``, and ``"nan"``. This avoids Python's bad habit of putting literal ``Infinity``, ``-Infinity``, and ``NaN`` in the JSON (without quotes).""" if x in ("nan", "inf", "-inf"):...
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from typing import OrderedDict def labels(root): """find label values from assets""" asset_labels = [] name_type_map = OrderedDict( [("fig", "fig"), ("media", "video"), ("table-wrap", "table")] ) for tag_name in list(name_type_map): for block_tag in root.findall(".//" + tag_name): ...
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def points_to_vec(pt1, pt2, flip = False): """ Converts the coordinate of two points (pt1 > pt2) to a vector flip: bool, default = False If the coordinate system should be flipped such that higher y-coords are lower (e.g. needed when working with images in opencv). """ vx = pt2[0]...
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import os import imghdr def get_images(img_dir): """ :param img_dir: :return: """ files = [] if os.path.isfile(img_dir): if imghdr.what(img_dir): files.append(img_dir) return files for root, sub_dir, dir_files in os.walk(img_dir): for img_file in dir_fi...
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import json def monday_handshake(webhook): """Takes webhook information, authenticates if required, and decodes information Args: webhook (request): Payload received from Monday's Webhooks Returns: dictionary: contains various information from Monday, dependent on type of webhook sent ...
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def rbits_to_int(rbits): """Convert a list of bits (MSB first) to an int. l[0] == MSB l[-1] == LSB 0b10000 | | | \\--- LSB | \\------ MSB >>> rbits_to_int([1]) 1 >>> rbits_to_int([0]) 0 >>> bin(rbits_to_int([1, 0, 0])) '0b100' >>> bin(rbits_to...
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def esi_Delta(Delta, q): """ Calculate equivalent step index (esi) Delta for a graded-index fiber. Args: Delta : relative refractive index [-] Returns: equivalent relative refractive index [-] """ return q * (2 + q) / (1 + q)**2 * Delta
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import numpy def NoRanking(robot, ik_solutions): """ Return IK solutions with an arbitrary ranking. """ return numpy.ones(ik_solutions.shape[0])
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def read_worksheet(worksheet_name, workbook): """Read worksheet table to list of dicts """ output = [] try: data = workbook[worksheet_name].values except KeyError: print("Worksheet {} not found".format(worksheet_name)) return output keys = next(data) data = list(data...
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def generate_macs_args(flags): """ This is a helper function that takes the sim options and outputs the start the macs_args :param flags: :return macs_args: """ macs_args = None if '-macs_file' in flags: macs_args = [flags['-macs_file'][0][0], flags['-length'][0][0], "-I", flags['-I...
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def _expand(dict_in): """ Convert {key1: list1, key2: list2} to {list1[0]: key1, list1[1]: key1, list2[0]: key2 etc} """ dict_out = {} for key in dict_in: for item in dict_in[key]: dict_out[item] = key return dict_out
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def reshape_by_symbol(y): """ Deprecated helper function. Was not used in the final implementation.""" grouped_df = y.reset_index() \ .groupby('level_0') \ .apply(lambda x: x.reset_index(drop=True)) \ .drop('level_0', axis=1) grouped_df.index = grouped_df.index.droplevel(level=1) ...
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def replacer(svgFile, toReplace, newData): """ Searches through SVG file until it finds a toReplace, once found, replaces it with newData """ for count in range(0,len(svgFile)): found = svgFile[count].find(toReplace) #Check if the current line in the SVG file has the required string if n...
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def get_delimited_string_from_list(_list, delimiter=', ', wrap_values_with_char=None, wrap_strings_with_char=None): """Given a list, returns a string representation of that list with specified delimiter and optional string chars _list -- the list or tuple to stringify delimiter -- the the character to sepe...
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def bounds(): """ 'Kf' - day-degree rate of melting (mm/(day*celsium degree)) [1, 10] 'CTG' - dimensionless weighting coefficient of the snow pack thermal state [0, 1] """ bnds = ((1, 10), (0, 1)) return bnds
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def tauxcontacper(beta,p,cbeta,T): """renvoie une fonction de contact de periode T qui vaut beta pendant une fraction p de laperiode et beta(1-cbeta) pendant le reste de la periode""" def f(t): if (t <= T*p): return(beta) else: return(beta*(1-cbeta)) return(f)
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def get_yaml(path): """ Return the Yaml block of a post and the linenumbers of it. """ end = False yaml = "" num = 0 with open(path, 'r', encoding='utf-8') as f: for line in f.readlines(): if line.strip() == '---': if end: break ...
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def convert_PBDMS_into_dict(doc_annotations): """Convert annotations built from PBDMS dataset into final output dict. Args doc_annotations (list): has format [(annotation 1), (annotation 2), ...] Returns output_PBDMS (dict): has format {file_id: [(annotation_str, start_pos, end_pos, mesh_...
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def bitcount(num): """ Count the number of bits in a numeric (integer or long) value. This method is adapted from the Hamming Weight algorithm, described (among other places) at http://en.wikipedia.org/wiki/Hamming_weight Works for up to 64 bits. :Parameters: num : int The ...
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def _pad_binary(bin_str, req_len=8): """ Given a binary string (returned by bin()), pad it to a full byte length. """ bin_str = bin_str[2:] # Strip the 0b prefix return max(0, req_len - len(bin_str)) * '0' + bin_str
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def income3(households): """ Dummy for for income group 3 """ return (households['income_category'] == 'income group 3').astype(int)
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def _deep_flatten(items): # pylint: disable=invalid-name """Returns a list of objects, flattening sublists/subtuples along the way. Example: _deep_flatten([1, (2, 3, (4, 5), [6, 7]), [[[8]]]]) would return the list [1, 2, 3, 4, 5, 6, 7, 8]. Args: items: An iterable. If elements of this iterable are lists...
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def depth2inv(depth): """ Invert a depth map to produce an inverse depth map Parameters ---------- depth : torch.Tensor or list of torch.Tensor [B,1,H,W] Depth map Returns ------- inv_depth : torch.Tensor or list of torch.Tensor [B,1,H,W] Inverse depth map """ ...
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def get_unit_string_from_comment(comment_string): """return unit string from FITS comment""" bstart = comment_string.find("[") bstopp = comment_string.find("]") if bstart != -1 and bstopp != -1: return comment_string[bstart + 1: bstopp] return None
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from typing import Any import torch def _size_repr(key: str, item: Any) -> str: """String containing the size / shape of an object (e.g. a tensor, array).""" if isinstance(item, torch.Tensor) and item.dim() == 0: out = item.item() elif isinstance(item, torch.Tensor): out = str(list(item.si...
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def _strip(json_str): """Strip //-prefixed comments from a JSON string.""" lines = [] for line in json_str.split('\n'): pos = line.find('//') if pos > -1: line = line[:pos] lines.append(line) return '\n'.join(lines)
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def load_yolo_predictions(txt_path, classes=None): """Return a list of records from YOLO prediction file. Each record is a list `[label, box, score]`, where the box contains coordinates in YOLOv5 format. `score` can be None if text file does not contain scores, and `label` is either integer, or string ...
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def chirp_to_dict(args,curr_cfg=None): """Handler for `chirpCfg`""" if curr_cfg: cfg = curr_cfg if 'chirps' not in cfg.keys(): cfg['chirps'] = [] else: cfg = {'chirps': []} chirp_dict = {} chirp_dict['chirpStartIndex'] = int(args[0]) chirp_dict['chirpStopInde...
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import itertools def dim_transform(first, second, transform): """Adapt `transform` dimensions following `first` to `second` rules.""" if not all(itertools.chain(first, second)): return transform # Compute aspect ratios. first_ratio, second_ratio = map(lambda pair: pair[0] / pair[1], ...
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def group_changes(changes): """Consolidate same-position insertions and deletions into single changes. """ insertions = [c for c in changes if c.change_type == 'insert'] deletions = [c for c in changes if c.change_type == 'delete'] mutations = [c for c in changes if c.change_type == 'mutate'] in...
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def get_username_row_count(self): """ Gets the number of usernames in table """ count = self.follows_db_c.execute("select count(*) from usernames").fetchone() if count: return count[0] else: return False
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import hashlib def hashstring(s: str) ->str: """ Generating an "unique" user id from the sha224 algorithm. """ return hashlib.sha224(s.encode('ascii')).hexdigest()
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import os def massage_path(file_name_path): """ function to massage file path and do some transformations for different scenarios of file inputs :param file_name_path: :return: """ massaged_path = file_name_path # pprint(massaged_path) # convert possible windows style path to uni...
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import re def deNumerize(text:str) -> str: """Removes numbers from strings""" regex_pattern = re.compile(pattern = r'[0-9]', flags=re.UNICODE) return regex_pattern.sub(r'', text)
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def parse_cfg(cfgfile): """ Input: cfgfile Return: list of layer infos and net info """ with open(cfgfile, 'r') as f: lines = f.read().split('\n') lines = [x.strip() for x in lines if len(x) > 0 and x[0] != '#'] block = {} # info about a specific block blocks = [] ...
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from typing import Dict from typing import Any def get_schema_type(arg_schema: Dict[str, Any]) -> str: """Returns the schema type for an argument. Args: arg_schema: dict(str, *). Schema for an argument. Returns: str. Returns schema type by extracting it from schema. """ return ar...
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import argparse def prepare_parser(): """ Setup the program arguments. Returns ------- parser : argparse.ArgumentParser Parser object set up with the program arguments. """ parser = argparse.ArgumentParser( description='Save and restore qpdfview tab and bookmark sessions' ...
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def extractScopeLFN(scope_lfn): """ Extract the scope and LFN from the scope_lfn string """ # scope_lfn = scope:lfn -> scope, lfn _dummy = scope_lfn.split(':') return _dummy[0], _dummy[1]
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def _get_liblinear_solver_type(multi_class, penalty, loss, dual): """Find the liblinear magic number for the solver. This number depends on the values of the following attributes: - multi_class - penalty - loss - dual The same number is also internally used by LibLinear to determin...
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def set_style(style, text_color='white', highlight_hover=True, mini_zoom=False, th_mini_font_size=6, enforce_size=False, td_width=15, td_height=15): """Imposes some styling options on a DataFrame.style object.""" prope...
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def _hasfield(model_fields, field_name): """ Check if field name exists in list of model fields :param list model_fields: List of Django Model object fields :param string field_name: attribute string, dotted or dunderscored. example: 'user.first_name' or 'user__first_name' :returns: Field obje...
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def m_get_mobile_m1_m5_key_seq1(mobilestr, tags, key_list): """ 获取 mobile字符串在 tags字典中 1月到5月存在的key_list中key值的和的列表 :param mobilestr: 查询的手机字符串 :param tags: 含多种手机信息的字典 :param key_list: 查询的字段 :return: 该手机号1月到5月 在key_list中值的和 形成的列表 example: :...
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def get_relationship_targets(goids, relationships, go2rec): """Get GO ID set of GO IDs in a relationship target set.""" # Requirements to use this function: # 1) GO Terms must have been loaded with 'relationships' # 2) GO IDs in 'goids' arguement must be present in go2rec # 3) Arg, 'rela...
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import math def rh2ah(rh, t ): """[summary] Args: rh ([type]): rh min t ([type]): temp max Returns: [type]: [description] """ return (6.112 * math.exp((17.67 * t) / (t + 243.5)) * rh * 2.1674) / ( 273.15 + t )
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def enum_solutions(node): """ >>> node = {'entry': {'lemma': u'EOS'}} >>> enum_solutions(node) [[u'EOS']] >>> node = { ... 'entry': {'lemma': u'これ'}, ... 'next': [ ... { ... 'entry': {'lemma': u'は'}, ... 'next': [ ... {...
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import glob import os def find_svgs(directory): """Find all SVG files in the provided directory and all subdirectories. :param directory: The directory to search for SVGs. :returns: An enumerable of SVG file names. """ return glob.glob(os.path.join(directory, "**", "*.svg"), recursive=True)
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import sys def get_full_stack_desc(): """Build full stack of Orion call""" i = 1 frame = sys._getframe(i) while ( "orion/core/worker/experiment.py" not in frame.f_code.co_filename or frame.f_code.co_name.startswith("_") ): i += 1 frame = sys._getframe(i) stack ...
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import re def findErrorInSqlFile(sqlFile, output): """ function : Find error in the sql file input : String,String output : String """ GSQL_BIN_FILE = "gsql" # init flag ERROR_MSG_FLAG = "(ERROR|FATAL|PANIC)" GSQL_ERROR_PATTERN = "^%s:%s:(\d*): %s:.*" % ( GSQL_BIN_FILE, sqlFile...
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import glob import os def get_fastq_dir(fc_dir): """Retrieve the fastq directory within Solexa flowcell output. """ full_goat_bc = glob.glob(os.path.join(fc_dir, "Data", "*Firecrest*", "Bustard*")) bustard_bc = glob.glob(os.path.join(fc_dir, "Data", "Intensities", "*Bustard*")) machine_bc = os.pat...
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def postprocess(var_list): """수집한 환자수 후처리 Args: var_list: 후처리 할 문자열 list Returns: (list) var_list 순서대로 후처리된 결과 """ result = [] for var in var_list: var = var.replace(',', '').strip() if '.' in var: var = float(var) elif var == '-': ...
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def edit_distance(left_word: str, right_word: str) -> int: """ The difference between same-length words in number of edits The result is the edit distance of the two words (number of substitutions required to tranform left_word into right_word). Args: left_word: One word to compare rig...
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def convert_to_undirected(G): """Return a new undirected representation of the graph G.""" return G.to_undirected()
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def evaluate_model(model, X_val, Y_val): """evaluate the model""" scores = model.evaluate(X_val, Y_val, verbose=0) print("%s: %.2f%%" % (model.metrics_names[0], scores[0]*100)) print("%s: %.2f%%" % (model.metrics_names[1], scores[1]*100)) return scores
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import numpy def total_dipole_moment(vec): """ Calculate the total dipole_moment value from the vector. Value is simply the norm of the vector. :param vector: dipole_moment vector in XYZ coords (Bohr) :type vector: tuple :rtype: float """ assert len(vec) == 3 return ...
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def make_tuple(input): """ returns the input as a tuple. if a string is passed, returns (input, ). if a tupple is passed, returns the tupple unmodified """ if not isinstance(input, (tuple, list)): input = (input,) return input
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def rawformat(x, pos): """ Generic number formatter to help log plot look nice """ if (x < 1000): return '%1.0f' % x if (x < 10000): return '%1.1fK' % (x/1000.0) if (x < 1000000): return '%1.0fK' % (x/1000.0) if (x < 1e9): return '%1.1fM' % (x/1.0e6) if (x < 1e12): return '%1.1fB' % (x/...
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def get_nested_attr(obj, attr, default=None): """Get nested attributes of an object.""" attrs = attr.split(".") for a in attrs: try: obj = getattr(obj, a) except AttributeError: if default: return default else: raise ret...
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import hashlib def validate_proof(previous_proof, proof): """ Validates the new proof. :param int previous_proof: Proof of the previous block :param int proof: Potential proof of the next block :return bool: True if the new proof is valid, False if not """ attempt = f'{previous_proof}{pr...
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def split_barcode(barcode, return_gg=False): """Splits a barcode sequence into part A, part C, and part B sequences.""" split = barcode.split("-") if len(split) == 2: # Remove the gem group from the barcode barcode, gem_group = split else: gem_group = None assert len(barcode)...
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def undistort(image, pairs): """Undistort an image.""" arguments = [] for rdot, sdot in pairs: arguments.extend(sdot) arguments.extend(rdot) image.distort('perspective', arguments) return image
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def getBucketForDomain(domain): """ get the bucket for the domain or None if no bucket is given """ if not domain: return None if domain[0] == '/': # no bucket specified return None index = domain.find('/') if index < 0: # invalid domain? return No...
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import math def compute_idfs(documents): """ Given a dictionary of `documents` that maps names of documents to a list of words, return a dictionary that maps words to their IDF values. Any word that appears in at least one of the documents should be in the resulting dictionary. """ # Slig...
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import csv def _readcsv(file): """Read a CSV file into a multidimensional array of rows and columns.""" rows = [] with open(file, newline='') as csvfile: reader = csv .reader(csvfile, delimiter=',', quotechar='"') headers = next(reader, None) # headers for row in reader: ...
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import math def solution(X, Y, D): """ This is deceptively simple but quite devious. I have got to give it to the guys at codility here, the problem description implies a solution to the problem that is much more complex that is necessary. I am pretty sure that if implemented it using a while/for...
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def create_tag(item, tag="a"): """ some function to wrapp HTML-tag with data-attributes around a string""" try: item_text = item.text except AttributeError: item_text = "no text provided" try: item_lang = item.language except AttributeError: item_lang = "no lang provi...
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def format_txt_desc(node): """ Formats a XML node into a plain text format. """ desc_buf = '' for desc in node.childNodes: if desc.nodeName == "#text": desc_buf += desc.data + "\n" elif desc.nodeName == "p": desc_buf += desc.firstChild.data + "\n" for chld in desc.childNodes: if chld.nodeName ==...
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import torch def recid_evaluate_high_risk(bnn): """ Recidivism prediction task: evaluate high-risk fraction of both groups """ samples, _ = bnn.all_bayes_samples[-1] preds = (bnn.predict(samples, bnn.X_train, return_probs=True).mean(dim=0) >= 0.5).float() eval_data = torch.stack((bnn.X_train_race, preds)).t() a...
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def quickmafs(graph): """ :param graph: takes a graph as input and weighs each vertex :return: maximum weight """ weight = {} weight['[0, 0]'] = 1 # print(graph) for node in graph: # print(node) for vertex in graph[node]: try: weight[str(vertex...
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def sum_attributes(triplet): """ return the sum of the attributes of a triplet ie: triplet = (((2, 2, 2, 2), (3, 3, 3, 3), (1, 2, 3, 1))) returns [6, 7, 8, 6] <- [2+3+1, 2+3+2, 2+3+3, 2+3+1] """ return [sum(a) for a in zip(*triplet)]
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def get_Theta_ref_SH_H(Theta_ref_cnd_H): """(26) Args: Theta_ref_cnd_H: 暖房時の冷媒の凝縮温度(℃) Returns: 暖房時の冷媒の過熱度(℃) """ return 4.49 - 0.036 * Theta_ref_cnd_H
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from typing import Union from typing import Iterable from typing import Any def flatten_to_list(obj: Union[Iterable[Any], Any]) -> Union[list[Any], Any]: """ Flattens iterable to a non-nested list Function ignores strings and treats as non-iterable :param obj: iterable of nested iterables :retur...
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def apply_fn(data: dict, fn): """ Apply a function to all values in a dictionary. :param data: :param fn: :return: """ for key, value in data.items(): data[key] = fn(value) return data
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def hitrate_inverse_to_hitrate(inv_dict, coverages): """Convert the "inverse hitrate dictionary" to a more traditional lookup, using `coverages`.""" out = dict() for cov in coverages: choices = [k for k,v in inv_dict.items() if v <= cov] out[cov] = 0 if len(choices) == 0 else max(choices...
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def clean_team_name(team_names): """Take a list of team_names, modify the names to match the format specified in br_references, and return a new list Args: team_names: a list of team_names to be checked for validity, and if needed, modified """ new_team_names = [] for team in team_names: ...
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def centroide(DF): """ DataFrame -> DataFrame Hypothèse: len(M) > 0 rend le centroïde des exemples contenus dans M """ return DF.mean().to_frame().transpose()
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from typing import List import subprocess import click def run_bitwarden_command(args: List[str]) -> str: """ Call `bw` with the provided arguments and return whatever it gives on standard out. Complain if the command exits with a non-zero status code. """ cmd = ["bw"] + args try: res...
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import numpy def smooth(v: numpy.ndarray) -> numpy.ndarray: """ Smooth a vector that is oscillating. Parameters ---------- v : 1-D array The oscillating vector you want to smooth. Returns ------- sv : 1-D array The smoothed vector. """ dim = len(v) smat = ...
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import random def getName(): """ allows for random human names""" name = "" for _ in range(5): char = chr(random.randint(97, 122)) if char != "\n": name += char else: name += " " return name
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def _starlist_fn(request): """Starlist filename""" return request.param
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def datestring_to_sql_parameter(datestring): """ Converting date string into a dictionary suitable for the sql parameters :param datestring (string): string that contain a start and end date in the format %Y%m%d_to_%Y%m%d :return date_sql_param (dict): dictionary with the date parameters defined to con...
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from typing import Iterable from typing import Callable def any_matches(iterable: Iterable, cond_fn: Callable = bool) -> bool: """ Returns `True` if `cond_fn` is `True` for one or more elements in `iterable`. Parameters ---------- iterable : Iterable The iterable to be checked con...
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from typing import Set def get_valid_name_permutations(param_name: str) -> Set[str]: """Get all underscore permutations for provided arg name""" return { "_", param_name, f"_{param_name}", f"{param_name}_", }
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import numpy def _compute_strategy_coefficient(distances, strategy, labels): """ Creates a matrix """ if strategy in ('gain', 'gain_p'): ar = numpy.arange(distances.shape[0]) dist = distances[ar, labels] return distances - dist[:, numpy.newaxis] raise ValueError( # pragma:...
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