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def normalise_activity_by_sector_month( topic_activity, sector_month_labels, sector_variable="sector" ): """Normalise s.t. each [sector, month] sums to 1.""" norm_factor = ( sector_month_labels.dropna() .groupby( [ "month", sector_variable, ...
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def convert_to_list(something, convert_all=True): """convert other types to string.""" out = [] if isinstance(something, (list, tuple)): for x in something: out.append(convert_to_list(x, convert_all=False)) else: if convert_all: out.append(something) else:...
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def is_permutation(a: int, b: int) -> bool: """Returns boolean if a and b are permutations of each other.""" s_a, s_b = str(a), str(b) if set(s_a) != set(s_b): return False if len(s_a) != len(s_b): return False return sorted(list(s_a)) == sorted(list(s_b))
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import pickle import time def persistence(*args): """ 持久化对象或加载对象 :param args: 持久化参数顺序(对象, 存储文件夹, 文件名标识,'save') 加载参数顺序(文件路径, 'load') :return: """ if args[1] == 'load': f = open(args[0], 'rb') obj = pickle.load(f) return obj elif args[3] == 'save': ...
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def has_body(headers): """ :param headers: A dict-like object. """ return 'content-length' in headers
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from collections import Counter def related_by_digit_permutation(num_a, num_b): """ Check if two numbers are related by digit permutation. """ return Counter(str(num_a)) == Counter(str(num_b))
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from typing import Dict from typing import Any from typing import Optional def get_name(hook: Dict[Any, Any]) -> Optional[str]: """ Creates a name based on the webhook call it recieved Format: Timestamp_Devicename.mp4 Removes any characters that are not regular characters, numbers, '_' '.' or '-' ...
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import sqlite3 def init_db(conn_or_path): """ Init the hash table using an open sqlite3 connection. If the argument is a string, we create/open the database. In both case, we return the connection object. """ # open / get connection is_file = type(conn_or_path).__name__ == 'str' if is_...
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def iterator(it): """ Convenience function to toggle whether to consume dataset and forecasts as iterators or iterables. :param it: :return: it (as iterator) """ return iter(it)
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def normalize_date(date): """Round datetime down to midnight.""" return date.replace(hour=0, minute=0, second=0, microsecond=0)
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import tempfile import os def CallWithFile(func, data): """Calls func("/path/to/tempfile/containing/data").""" tmp_file = tempfile.NamedTemporaryFile(delete=False) try: tmp_file.write(data) tmp_file.close() return func(tmp_file.name) finally: os.remove(tmp_file.name)
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import sqlite3 def get_list_of_teams(): """Get a list of all teams.""" #FINISHED FOR SASO dbconn = sqlite3.connect('saso.db') cursor = dbconn.cursor() teamlist = [] cursor.execute('SELECT * from teams where team_id = 0') teamlist.append(cursor.fetchone()[1]) for team in cursor.exe...
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import math def hits_to_kill(damage, health): """ Returns the number of hits it takes to kill the target. """ if damage > 0: hits = health / damage else: hits = math.inf if hits < 1: hits = 1 elif hits < math.inf: hits = math.ceil(hits) return hits
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import os def get_image_filepath(data_dir, row): """ Get image filepath from row """ return os.path.join(data_dir, f"{row.Species}___{row.Label}", row.Filename)
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from textwrap import dedent def create_script(molecule_name, temperature=273.15, pressure=101325, helium_void_fraction=1.0, unit_cells=(1, 1, 1), simulation_type="MonteCarlo", cycles=2000, init_cycles="auto", forcefield="CrystalGenerator", input_...
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import random def randomTime(*args,**kwargs): """Generates a random time between 50.000 and 59.999 in bytes""" randomBytes = [ 128, #finish time indicator random.randrange(48,57), #thousandth random.randrange(48,57), #hundreth random.randrange(48,57), #tenth random.rand...
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import uuid def generate_unique_id(text): """ Generate a unique UUID based on a string Args: text(str): The string to base the uuid on Returns: str: The UUID in hex string format """ return uuid.uuid3(uuid.NAMESPACE_URL, text).hex
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import random import string def generate_random_key() -> str: """ Creates and returns a randomly generated 10 character alphanumeric string. :return: """ return "".join( random.SystemRandom().choice(string.ascii_uppercase + string.digits) for _ in range(10) )
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def _df_meta_to_arr(df): """Check what kind of data exists in pandas columns or index. If string return as numpy array 'S' type, otherwise regular numpy array. """ if len(df.columns): if isinstance(df.columns[0], str): columns = df.columns.values.astype("S") else: co...
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from pathlib import Path import yaml def load_yaml(yamlpath: str): """ Loads a yaml file from a path. :param yamlpath: Path to yaml settings file :returns: dict settings object """ yamlpath_full = Path(yamlpath).absolute() with open(yamlpath_full, 'r', encoding="utf-8") as stream: try...
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import os import requests def validar_config_filepath(path: str) -> bool: """ Valida se o ficheiro de config fornecido é um path existente no sistema, ou se aponta para o ficheiro de config num repositorio """ if not os.path.exists(path): exists_web: requests.Response = requests.get( ...
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def show_version_cmd(): """Show version. """ return ('show_version', {})
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import time def timer_step(func): """Timer decorator""" def wrapper(*args, **kwargs): start = time.perf_counter() rv = func(*args, **kwargs) finish = time.perf_counter() print(f'\nFinished in {round((finish - start) / 60, 2)} minute(s)') return(rv) return(wrapper)
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def get_framework_and_technology(): """ Return the framework and its related technology (e.g. Django, python) as a tuple. Fails with a ``KeyError`` if user didn't choose a framework. """ framework_technology = { 'Django': 'python', 'Flask': 'python', 'SpringBoot': 'java', ...
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import itertools def get_anagrams(*yarn): """Return a list of anagrams for a string.""" # If only one letter came in, return it if yarn: if len(yarn[0]) <= 1: return list(yarn) else: raise ValueError("Must provide at least two letters") # Get all of the words from the ...
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def rjust(value, arg): """ Right-aligns the value in a field of a given width. Argument: field size. """ return value.rjust(int(arg))
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import subprocess def run_one_shline(shline): """Shell out""" ran = subprocess.run( shline, shell=True, stdout=subprocess.PIPE, stderr=subprocess.STDOUT ) assert not ran.stderr # because stderr=subprocess.STDOUT assert ran.returncode is not None gots = ran.stdout.decode().strip().re...
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def has_field(analysis, field): """Return true or false if given field exists in analysis""" for f in field: try: analysis = analysis[f] except: return False return True
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import os def normalize(path): """Converts a path to an absolute path. Args: path (str): Input path. Returns: str: Absolute path. """ return os.path.abspath(path)
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import multiprocessing def queue_loader(q_list): """ Copy values from a List into a SimpleQueue. """ q = multiprocessing.SimpleQueue() for item in q_list: q.put(item) return q
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import re def fuzzyfinder(input, collection, accessor=lambda x: x): """ Args: input (str): A partial string which is typically entered by a user. collection (iterable): A collection of strings which will be filtered based on the `input`. accessor (functio...
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def generate_method(method_name): """Generate a method for a given Thrift service. Uses the provided TChannelSyncClient's threadloop in order to convert RPC calls to concurrent.futures :param method_name: Method being called. :return: A method that invokes the RPC using TChannelSyncClient """ ...
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def color_to_int(rgb): """Converts a color from floating point range 0-1 to integer range 0-255.""" return tuple(int(round(c * 255)) for c in rgb)
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import os from typing import Any import csv import numpy def _csvToHeaderValues(input_csv_filename: str): """Given csv file from a TokenSPICE run, creates (header, values). Args: input_csv_filename -- absolute path of input csv file Returns: header: List[str] -- e.g. 'Tick', 'Second', .....
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import multiprocessing import os def num_processors(): """Returns the number of processors. Python on OSX 10.6 raises a NotImplementedError exception. """ try: # Multiprocessing return multiprocessing.cpu_count() except: # pylint: disable=W0702 # Mac OS 10.6 return int(os.sysconf('SC_NPROC...
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import re def _get_before_pronounce_sentence(words, index): """Return before pronounce sentence Args: words (List[Words]): stanfordnlp word object list. index (int): Pronounce index. Return: sentence (str): target word contains sentence to pronounce. """ roots = [(i, w) fo...
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def _get_kaggle_type(competition_or_dataset: str) -> str: """Returns the kaggle type (competitions/datasets). Args: competition_or_dataset: Name of the kaggle competition/dataset. Returns: Kaggle type (competitions/datasets). """ # Dataset are `user/dataset_name` return 'datasets' if '/' in compet...
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def token_response_json(token_response): """ Return the JSON from a successful token response. """ return token_response.json
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def get_subgraph(G, attribute, attribute_value): """ This function returns the subgraph of G with the attribute attribute_value. Input: ------ G: networkx graph attribute: attribute of the nodes attribute_value: value of the attribute Output: ------- subgra...
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import re def verifyFormat(ATS_LIST): """ Matches a list of input ATS coordinates against the AltaLIS format in a regex. Returns True if any of the coordinates match the regex, False if none return. """ # Defines a list of expressions to check against the coordinates. # Anything in s...
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def SanityCheck(s): """ Class performs a simple text-based SanityCheck to validate generated SMILES. Note, this method does not check if the SMILES defines a valid molecule, but just if the generated SMILES contains the correct number of ring indices as well as opening/closing brackets. ...
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def find(wildcard, of_type=None): """ This will take in the given wildcard string and find all elements whose names match the given wildcard. The filtered list can be further refined using the 'of_type' variable where you can define the type of elements to return. :param wildcard: A wildcard st...
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import random def randint(): """Return a random 12 digit integer.""" return random.randint(100000000000, 999999999999)
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def priormonthToDay(freq, j_mth, k_mth): """ Consistent w/ Fama and French (2008, 2016), map the prior `(j-k)` monthly return strategy into a daily strategy (see `Ken French's online documentation <https://mba.tuck.dartmouth.edu/pages/faculty/ken.french/data_library.html>`_). Parameters __________...
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from typing import List from typing import Dict def deps_to_dict(dependencies: List[dict], by: str = 'dependent') -> Dict[int, dict]: """Create a dictionary of dependencies, for faster lookups""" if by not in ('dependent', 'governor', 'label'): raise ValueError('by must be one of [dependent, governor...
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def sources(graph, n): """ Determines the set of sources of 'node' in a DAG :param graph: Graph :return: set of nodes """ nodes = {n} q = [n] while q: new = q.pop(0) for src in graph.nodes(to_node=new): if src not in nodes: nodes.add(src) ...
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import re def _filter_zones(wanted_zones_prefix, zone_list): """Filter unwanted zones from a zone list using a prefix.""" target_zones = [] for zone in zone_list: for prefix in wanted_zones_prefix: pattern = re.compile(f'^{prefix}') if pattern.match(zone): ...
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def _cut_if_too_long(text: str, max_length: int) -> str: """Cut a string down to the maximum length. Args: text: Text to check. max_length: The maximum length of the resulting string. Returns: Cut string with ... added at the end if it was too long. """ if len(text) <= max_...
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def clean_text(text): """ split and clean the text. :param text: text tokennized. :return: """ #text = re.sub("[A-Za-z0-9]", "", text) text = [x for x in text.split(" ") if x!=''] return text
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import ipaddress def is_address(entry): """ Check if entry is a valid IP address """ try: _ = ipaddress.ip_address(entry) except ValueError: return False return True
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def find_fragmented_packet(results): """ This function searches Tcpdump's standard output and looks for packets that have a length larger than the MTU(hardcoded to 1500) of the device. """ for line in results.decode('utf-8').split('\n'): pieces = line.split(' ') if len(pieces) < 2: ...
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import numpy def find_separation_skycomponents(comps_test, comps_ref=None): """ Find the matrix of separations for two lists of components :param comps_test: List of components to be test :param comps_ref: If None then set to comps_test :return: """ if comps_ref is None: ncomps = ...
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import os def join(a: str, p: str) -> str: """Configurable equivalent to `os.path.join`. Only accepts 2 args.""" return os.path.join(a, p)
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def tuple_or_list(target): """Check is a string object contains a tuple or list If a string likes '[a, b, c]' or '(a, b, c)', then return true, otherwise false. Arguments: target {str} -- target string Returns: bool -- result """ # if the target is a tuple or ...
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def get_ext(file): """Return the extension of the given filename.""" return file.split('.')[-1]
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def add_vertical_area(area): """ It opens a vertical area. """ area.master.master.master.create() return 'break'
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def splitext(path): """Split the extension from a pathname. Extension is everything from the last dot to the end. Return "(root, ext)", either part may be empty. """ i = 0 n = -1 for c in path: if c == '.': n = i i = i+1 if n < 0: return (path, "") else: ...
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import inspect def get_wrapped_sourcelines(f): """ Gets a list of source lines and starting line number for the given function :param f: Input function :return: Source lines """ if hasattr(f, "__wrapped__"): # has __wrapped__, going deep return get_wrapped_sourcelines(f.__wrapp...
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import logging def get_logger(level=logging.INFO, filename=None): """ use the basics from analytics-mesh for this instead. """ log = logging.getLogger() # we nuke the existing handlers whenever this function is called (else they stack) log.handlers = [] formatter = logging.Formatter('%(asc...
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def _reshape_for_est(X_del): """Convert X_del to a sklearn-compatible shape.""" n_times, n_epochs, n_feats, n_delays = X_del.shape X_del = X_del.reshape(n_times, n_epochs, -1) # concatenate feats X_del = X_del.reshape(n_times * n_epochs, -1, order='F') return X_del
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import inspect import ast import textwrap def ast_object(obj): """Convert a Python object to its AST representation.""" src = inspect.getsource(obj) # ast wraps always into a module node = ast.parse(textwrap.dedent(src)).body[0] return node
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def txt2str(filename): """Reads the plain text of a .txt file and returns a string""" with open(filename, 'r') as myfile: data=myfile.read().replace('\n', '') myfile.close() return data
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def _monitor_pvs(*pv_names, context, queue, data_type='time'): """ Monitor pv_names in the given threading context, putting events to `queue`. Parameters ---------- *pv_names : str PV names to monitor. context : caproto.threading.client.Context The threading context to use. ...
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def read_files(): """ Reads from existing .txt files and collects them into a dictionary There are 81 files all in the same file wih the module """ files_all = {} for i in range(1, 82): file_name = str(i) + ".txt" handle = open(file_name, "r", encoding="utf8") temp = ha...
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from typing import List def column_widths(table: List[List[str]]) -> List[int]: """Get the maximum size for each column in table""" return [max(map(len, col)) for col in zip(*table)]
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def commands(command): """ Check if command is to get available Commands (c | commands). """ return (command.strip().lower() == 'c' or command.strip().lower() == 'commands')
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def build_concentartion(species_id, number): """ Builds the concentration component for each species Parameters ---------- species_id : int species id from the species_indices dictionary number : float stoichiometric co-eff of the species ...
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import numpy def mp3_doubles(D2, I): """Return the doubles contribution to the 3rd order energy.""" dX = (1.0/8.0)*numpy.einsum( 'ijab,abcd,cdij,ijab,ijcd->', I.oovv, I.vvvv, I.vvoo, D2, D2) dY = (1.0/8.0)*numpy.einsum( 'ijab,klij,abkl,ijab,klab->', I.oovv, I.oooo, I.vvoo, ...
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import re def extractOutputOrAction(keyCode1, xmlInput): """Sometimes a key starts an action, this will allow replacement of those keys""" regularExpression = ( r"code=\"" + str(keyCode1) + '"' + r"\s+(output=\".*?\"|action=\".*?\")" ) output1 = re.search(regularExpression, xmlInput) if ou...
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from typing import List def _merge(nums: List[int], left: int, mid: int, right: int, aux: List[int]) -> int: """ Helper function to merge the given sub-list. :param nums: list[int] :param left: int :param mid: int :param right: int :param aux: list[int] :return: int """ ...
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import uuid def gen_id(type_, name): """Generate a random UUID if name isn't given. Returns: string """ if name is None: rand_id = uuid.uuid4() rand_id = str(rand_id)[:8] name = type_ + '_' + rand_id return name
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def read_from_text(text): """ Function to extract key words from the sentence """ read = [] for t in text.split(' '): try: read.append(float(t)) except ValueError: pass return read
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def int_to_byte(n): """ convert int into byte """ return n.to_bytes(1, byteorder='big')
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def get_coords_from_line(line): """ Given a line, split it, and parse out the coordinates. Return: A tuple containing coords (position, color, normal) """ values = line.split() pt = None pt_n = None pt_col = None # The first three are always the point coords if l...
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def get_dataset_names(datasets): """ Returns the names of the datasets. Parameters ---------- datasets : tuple tuple of datasets Returns ---------- dataset_names : list list of dataset names """ dataset_names = [] for index_dataset, (dataset_name, df_data) in enumerate...
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def angle_offset(base, angle): """ Given a base bearing and a second bearing, return the offset in degrees. Positive offsets are clockwise/to the right, negative offsets are counter-clockwise/to the left. """ # rotate the angle towards 0 by base offset = angle - base if offset <= -180:...
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def is_leaf(node): """Checks whether the :code:`node` is a leaf node.""" return not isinstance(node, list)
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def raiz(x, y): """ La raíz enésima de un número. .. math:: \sqrt[y]{x} Args: x (float): Radicando. y (float): Índice. Returns: float: La raíz. """ return x**(1/y)
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def is_tar(name): """Check if name is a Tarball.""" return ( name.endswith(".tar") or name.endswith(".gz") or name.endswith(".bz2") )
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def format_date(datestring): """Convert a long iso date to the day date. input: 2014-05-01T02:26:28Z output: 2014-05-01 """ return datestring[0:10]
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def diste(p1, p2): """ Returns euclidean distance divided by the default NYC speed. Admissible. Parameters: (p1, p2) p1 - (lat, lon) p2 - (lat, lon) """ return (pow(abs(p1[0] - p2[0]), 2) + pow(abs(p1[1] - p2[1]), 2)) ** 0.5 / 65
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def adaptative_myers_k(sc_len,edit_frac): """Calculate the edit distance allowed as a function of the read length""" return(float(sc_len*edit_frac))
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def unescape(str): """Undoes the effects of the escape() function.""" out = '' prev_backslash = False for char in str: if not prev_backslash and char == '\\': prev_backslash = True continue out += char prev_backslash = False return out
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import os import re def display_diff(files, diff): """Format header differences into a nice string Parameters ---------- files: list of files that were compared so we can print their names diff: dict of different valued header fields Returns ------- str ...
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import argparse def parse_args(): """parse arguments.""" parser = argparse.ArgumentParser() parser.add_argument('--src-path', help='test xml source path') parser.add_argument('--src-xml', help='test xml source file') parser.add_argument('--dst-path', help='the copy dest path') args = parser.pa...
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import glob import os def get_latest_weights(weights_dir): """ Gets latest weights file and var pickle from specified directory. """ dir_contents = glob.glob(weights_dir + '/*') while dir_contents: latest = max(dir_contents, key=os.path.getctime) weights_file_list = glob.glob(latest + '/dd...
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import torch def _train_step_ddc(x_batch, y_batch, model): """ Single training step for DDC. Args: x_batch: Batch of inputs y_batch: Batch of labels model: ddc.DynamicDropConnect object Returns: Model output, batch loss """ # Compute forward pass o...
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from typing import Any import argparse def parse_args(prog: str, argv: list) -> Any: """Verbose will be determined here""" parser = argparse.ArgumentParser(prog) parser.add_argument( "-t", "--test", action="store_true", dest="TEST", help="run test program" ) parser.add_argument( "-...
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def compare_file(file1, file2): """ Compare two file, line by line """ line1 = True line2 = True with open(file1, 'r') as f_1, open(file2, 'r') as f_2: while line1 and line2: line1 = f_1.readline() line2 = f_2.readline() if line1 != line2: ...
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def get_bar_order(plot_params): """ Gets which cumulative bars to show at the top of the graph given what level of detail is being specified Parameters ---------- plot_params: dict Dictionary of plotting parameters. Here, `all_pos_contributions`, `detailed`, `show_score_diffs`, ...
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def gen_tc_objects(group_types, batch, tc_type, items, gen): """Builds new dictionary for groups and indicators to be added to batch.""" if not isinstance(items, list): items = [items] tc_type = tc_type.title() tc_objects = list() nf = 'summary' obj_type = 'indicator' if tc_type in g...
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def words(): """Load test data fixture.""" words = ["cake", "apple", "banana", "cherry", "chocolate"] return words
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def is_overlapped(peaks, chrom, start, end): """ check if the promoter of a gene is overlapped with a called peak :param peaks: :param chrom: :param start: :param end: :return: """ for temp_list in peaks[chrom]: if (temp_list[0] <= start and start <= temp_list[1] ) or (temp_l...
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def tags2parse_results(dicom): """Return the expected results that the tags2parse fixture should return for the dicom fixture. """ return { "ImageLaterality": "L", "SopInstanceUUUUID": dicom.SOPInstanceUID, "SopClazzUUID": "foobar", "study_uid": dicom.StudyInstanceUID, ...
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def totalMenuItems (theDictionary): """Calculates the total number of items available on menu (theDictionary). :param dict[str, float] theDictionary: Dict containing menu items as keys and respective prices as prices. :return: Total number of items on the menu. :rtype: int ...
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import builtins def _ipython_namespaces(ip): """ Return the (global) namespaces used for IPython. The ordering follows IPython convention of most-local to most-global. @type ip: C{InteractiveShell} @rtype: C{list} @return: List of (name, namespace_dict) tuples. """ ...
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from typing import Dict from typing import Any def _form_response_get_field(form_response: Dict[str, Any], filed_num: int): """ Extracts the value of a certain field from the Mephisto response. """ frd = form_response['task_data'] k = 'form_responses' if k in frd and len(frd[k]) and (filed_num...
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def emptyCoords(): """Returns a unit square camera with LL corner at the origin.""" return [[(0.0, 0.0), (0.0, 0.0), (0.0, 0.0)]]
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def _pad_name(name, pad_num=10, quotes=False): """ Pad a string so that they all line up when stacked. Parameters ---------- name : str The string to pad. pad_num : int The number of total spaces the string should take up. quotes : bool If name should be quoted. ...
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import torch def final_t(tx, input_cropped1, real_point): """ Accepts tx, the transformation mtx, the input_cropped points and the real_points (ground truth) :param : tx : bs x 4 x 4 :input_cropped1_tmp : (bs, 1, partial_num, 3) :real_point : (bs, 1, crop_num, 3) """ bs = input_cropped1.sh...
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