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import requests def http_get(url, fout=None): """Download a file from http. Save it in a file named by fout""" print('requests.get({URL}, stream=True)'.format(URL=url)) rsp = requests.get(url, stream=True) if rsp.status_code == 200 and fout is not None: with open(fout, 'wb') as prt: ...
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def getClusterTL(ndPage,lClusters,dIds): """ get tl nodes per cluster """ dTLCluster={} for i,c in enumerate(lClusters): dTLCluster[i]=[] lIds=c.get('content').split() for id in lIds: try:dTLCluster[i].append(dIds[id]) except KeyError:pass # ...
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import time def getTime(): """Returns current local time.""" t = time.time() currentTime = time.strftime("%Y-%m-%d %H:%M %Z", time.localtime(t)) return currentTime
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def XDown(data, names, normed = None, **kargs): """ good for normalised illumina data, returns the fold2up/down data """ X = kargs["X"] if normed: norm_value = data[normed] for c in data: if c != normed: normed_data = (data[c] / data[normed]) ...
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def get_nested_list_len(lst): """ Returns the combined length of all lists within a list. Non-recursive, so only goes one level deep """ ls_len = 0 if lst: for item in lst: ls_len += len(item) return ls_len
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from datetime import datetime import sys def complement_year(date_ref, m, d): """ 年を補完して日付を作る 年が不明の月日をのうち基準日に近いものを選ぶ。 探す範囲は、基準日の年を Y として Y±1 年。 Parameters ---------- date_ref, datetime : 規準日 m, int : 月 d, int : 日 Returns ------- date, datetime : 年を補完した日付 ...
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import random def sampling_iterable_shuffler(iterables_): """ Python Package based shuffler. :param iterables_: List of iterable container :return: """ return random.sample(iterables_, len(iterables_))
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def get_historical_date(data_point): """Returns the date of a DATA_POINT""" try: return data_point['begins_at'][0:10] except: return None
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import yaml def read_yaml(yaml_file): """Read a yaml file. Args: yaml_file (str): Full path of the yaml file. Returns: data (dict): Dictionary of yaml_file contents. None is returned if an error occurs while reading. """ data = None with open(yaml_file) as f: ...
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def Hourly_stats_trends(dataArray, inputField): """ Create hourly stats and trends for device data across days """ #get length of retrieved data dataLength = len(dataArray) #initalize hourlyData hourlyData = [] #loop through data for the device for x in range(0, dataLength): ...
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def safe_zip(sequence1, sequence2): """zip with safeguarding on the length """ assert len(sequence1) == len(sequence2) return zip(sequence1, sequence2)
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def c_escaped_string(data: bytes): """Generates a C byte string representation for a byte array For example, given a byte sequence of [0x12, 0x34, 0x56]. The function generates the following byte string code: {"\x12\x34\x56", 3} """ body = ''.join([f'\\x{b:02x}' for b in data]) ret...
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def new_masked_mac(mac, mask): """ make masked mac string. """ return "{0}/{1}".format(mac, mask)
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def test_object_type(obj: object, thetype: type): """Tests if the given object is of the specified type. Returns a Boolean True or False. Examples: >>> myint = 34 >>> test_object_type(myint, int) True >>> isinstance(myint, int) True >>> test_object_type(myint, s...
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import re def remove_leading_space(string: str) -> str: """ Remove the leading space of a string at every line. :param string: String to be processed :type string: str :return: Result string :rtype: str **Example:** .. code-block:: python string = " Hello \\nWorld!" ...
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def qb_account(item_title): """ Given an item title, returns the appropriate QuickBooks class and account Parameter: item_title Returns: item_class, item_account Note that this is only guaranteed to work for Ticketleap sales, not PayPal invoices. """ if 'Northern' in item...
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def bottom_row(matrix): """ Return the last (bottom) row of a matrix. Returns a tuple (immutable). """ return tuple(matrix[-1])
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def merge_sorted_cookie_lists(listA, listB): """Takes in two order lists of cookies and merges them together""" if type(listA) != list or type(listB) != list: raise TypeError( "Both arguments for merge_sorted_cookie_lists must be of type list.") final_list = [] listA_length = len(li...
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from typing import Dict def success_of_action_dict(**messages) -> Dict: """Parses the overall success of a dictionary of actions, where the key is an action name and the value is a dictionarised Misty2pyResponse. `overall_success` is only true if all actions were successful. Returns: Dict: The dictio...
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import torch def cal_normal(v, dim=-1, keepdim=False): """ :return: """ normal = (torch.sum(v ** 2, dim=dim, keepdim=keepdim)) ** 0.5 return normal
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import torch def torch_pc_from_disparity(disp, stereo_calib_f, stereo_calib_baseline, stereo_calib_centre_u, stereo_calib_centre_v, flatten_order='C'): """Transforms disparity map to 3d point cloud Args: disp: disparity map stereo_calib_...
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def roznice_skonczone(tab_y): """ obliczanie tabeli różnic skończonych :param tab_y: tabeli wartości funkcji :return: lista list różnic skończonych """ liczba_wezlow_interpolacji = len(tab_y) delta_y = [[]] delta_y[0] = tab_y for licznik in range(1, liczba_wezlow_interpolacji): ...
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def find_gc(seq: str) -> float: """ Calculate GC content """ if not seq: return 0 gc = len(list(filter(lambda base: base in 'CG', seq.upper()))) return (gc * 100) / len(seq)
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def set_to_list_geo(set_tranches, points_on_line): """ Convert set of (startnode, endnode) to a list of coordinate data of each node :param set_tranches: tuples with unique edges (startnode, endnode) :type set_tranches: set(int, int) :param points_on_line: information about every node in study case...
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def encode_target(df, target_column, label_map): """Add column to df with integers for the target. Args ---- df -- pandas DataFrame. target_column -- column to map to int, producing new Target column. Returns ------- df_mod -- modified DataFrame. targets -- lis...
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import math def is_prime(n): """Determine if a number is prime Args: n (int): Any integer Returns: [logical]: True if n is prime, False if n is not prime """ if n % 2 == 0 and n > 2: return False return all(n % i for i in range(3, int(math.sqrt(n)) + 1, 2))
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from typing import Counter def word_count(text): """ """ text = text.lower() skips = ['.',',',';','?',':','!','"',"'"] for ch in skips: text = text.replace(ch," ") # word_counts = {} # for word in text.split(" "): # if word in word_counts: # word_counts[word] += 1...
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def get_status(guess, actual): """ 根据猜测的单词和实际单词,获取状态码 :param guess: 猜测的单词 :param actual: 实际的单词 :return: 状态码 """ status = 0 base = 1 for i in range(len(guess)): c = guess[i] if c == actual[i]: status += 2 * base elif c in actual: status ...
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def getCpAdminId(): """ Get cpadmin ID """ return '-777'
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def choose_tests(ARG_selectionlist: list, ARG_choicelist: list) -> list: """This function prompts the user to select certain tests to run.""" print () print (f"The selected tests are: {ARG_selectionlist}") print (f"The available tests are:") num = 0 for item in ARG_choicelist: num = num ...
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def clip(value, min, max): """Clips (limits) the value to the given limits. The output is at least `min`, at most `max` and `value` if that value is between the `min` and `max`. Args: value: to be limited to [min, max] min: smallest acceptable value max: greatest acceptable val...
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import hashlib import os def hash_directory(path): """Recursively hashes the contents of a directory and returns the hex value. :param path: The path to the directory :return: SHA1 hash :rtype: str """ dir_hash = hashlib.sha1() for root, dirs, files in os.walk(path): for names i...
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def calcuInbreedCoeff(gt): """ Calculating the inbreeding coefficient by GT fields of VCF. Args: `gt`: A list. Genotype fields of all the samples. """ ref_count, het_count, hom_count, n = 0, 0, 0, 0 for g in gt: gs = g.split('/') if '/' in g else g.split('|') if '.' not ...
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import math def problem_03_prime_factor(number): """ Problem 3: Determines the largest prime factor for a number. Args: number (int): The number to determine the largest prime factor of. """ def prime_factors(case): result = [] if case % 2 and case > 2 == 0: result...
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def is_variable_geometry(xmldoc): """ Tries to guess whether the calculation involves changes in geometry. """ itemlist = xmldoc.getElementsByTagName('module') for item in itemlist: # Check there is a step which is a "geometry optimization" one if 'dictRef' in list(item.attri...
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import os def get_files(top, include=None, exclude=None): """Get all fullpath files in top directory""" if not top: raise ValueError('Top must be not null') results = [] for root, dirs, files in os.walk(top): for f in files: if include: if f in include:...
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import os def CleanScreen(): """ Cleans the screen. """ return lambda: os.system('cls')
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import argparse def get_argument_parser(): """ Return argument parser. :return: parser """ parser = argparse.ArgumentParser( formatter_class=argparse.ArgumentDefaultsHelpFormatter, description="ARM App manager test case generator", ) parser.add_argument( "-o", ...
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def GetMediaComponents(media_str, media_dict, mixAttr, mix): """ Args: media_str: (str) Media name media_dict: (d) media (str) -> list<compound_l> where compound_l list<compound (str), concentration (str), units (str)> e.g. [Ammonium chloride, 0.25, g...
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def convertConfigDict(origDict, sep="."): """ For each key in the dictionary of the form <section>.<option>, a separate dictionary for is formed for every "key" - <section>, while the <option>s become the keys for the inner dictionary. Returns a dictionary of dictionary. """ ...
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def parse_csv_data(csv_filename: str) -> list[str]: """Returns a list of strings representing each row in a given file""" file = open("data/" + csv_filename, "r", encoding="utf-8") lstrows = [] for line in file: lstrows.append(line.rstrip()) file.close() return lstrows
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def merge_means(mu1, mu2, n1, n2): """Merges means. Requires n1 + n2 > 0.""" total = n1 + n2 return (n1 * mu1 + n2 * mu2) / total
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def int2bool(intvar): """Method converts number to bool Args: intvar (int): number Returns: bool: result """ result = False intvar = int(intvar) if intvar > 0: result = True return result
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import six def get_comparable_revisits(query_metadata_table): """Return a dict location -> set of revisit locations for that starting location.""" revisit_origins = { query_metadata_table.get_revisit_origin(location) for location, _ in query_metadata_table.registered_locations } inter...
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import time def base_info(): """需要修改租户""" tenant_code = 'ghac' now_time = time.strftime('%Y%m%d%H%M', time.localtime()) return tenant_code + '-' + now_time + '-temp'
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def torch_to_np(images): """Transforms the unnormalized output of a gan into a numpy array Args: images (torch.tensor): unnormalized output of a gan Returns: (numpy.array) """ return ((images.clamp(min=-1, max=1) + 1) / 2).permute(0, 2, 3, 1).cpu().detach().numpy()
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import string import random def generate_id(): """Generate unique id for the order""" alphabet = string.ascii_letters.upper() + string.digits order_id = ''.join(random.choice(alphabet) for i in range(8)) return order_id
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def lookup_dunder_prop(obj, props, multi=False): """ Take an obj and lookup the value of a related attribute using __ notation. For example if Obj.a.b.c == "foo" then lookup_dunder (Obj, "a__b__c") == "foo" """ try: if "__" in props: head, tail = props.split("__", 1) ...
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def compose_plots(objects, epoch, title=''): """Compose a single plot from several objects associated with subplots of a single figure. Parameters ---------- objects: list of plot objects Plot objects returned using one of the 'build' methods of the Replay class. All the correspondi...
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import operator def filter_prefix(candidates: set[str], prefix: str = '', ones_operator=operator.ge) -> int: """Filter a set of binary number strings by prefix, returning a single int. This function considers a set of candidate strings, which must encode valid binary numbers. They are iteratively filtere...
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import torch def precisionk(actual, predicted, topk=(1, 5)): """ Computes the precision@k for the specified values of k. # Parameters actual : `Sequence[Sequence[int]]`, required Actual labels for a batch sized input. predicted : `Sequence[Sequence[int]]`, required Predicted labels f...
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import math def tdis(x, n): """ 【函数说明】 功能:标准正态分布的概率密度函数(t Distribution) 参数: + x:[float 浮点型] 某个样本点(x)的横坐标值 + n:[float 浮点型] 返回值: + [float 浮点型] 该样本点(x)处的概率密度 """ y = math.gamma((n+1)/2)/(math.sqrt(math.pi*n) * math.gamma(n/2)) * (1+(x**2/n))**(-(n+...
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def medhx_6a_notes(studydata, column, context): """Please append " times" to each number.""" return column.mask(column.notna(), column.astype(str) + ' times' )
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def image_size(img): """ Gets the size of an image eg. 350x350 """ return tuple(img.shape[1:: -1])
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def revcomp(s): """Returns the reverse compliment of a sequence""" t = s[:] t.reverse() rc = {'A':'T', 'C':'G', 'G':'C', 'T':'A', 'N':'N'} t = [rc[x] for x in t] return t
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def parse_visitor(d): """ Used to parse name of visiting team. """ return str(d.get("tUNaam", ""))
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def get_values(map, key): """ Get teh value for the key and remove the path from the route map Args: map: key: Returns: """ res = None for t in map: if t[0] == key: res = t[1] map.remove(t) return map, res
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def relu(x, c = 0): """ Compute the value of the relu function with parameter c, for a given point x. :param x: (float) input coordinate :param c: (float) shifting parameter :return: (float) the value of the relu function """ return c + max(0.0, x)
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import os def get_file_parts(filename): """Extracts the basename and extension parts of a filename. Identifies the extension as everything after the last period in filename. Args: filename: string containing the filename Returns: A tuple of: A string containing the basename...
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def GetPODAttrsValue(obj_def, exceptions=None): """Returns a list of values for attributes in POD object definitions. This method does not work for instances. It also will not return private data members. Args: obj_def: The object definition. (class definition) exceptions: Attributes to ignore. (list...
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import struct def wire_msg_from_msg(msg): """Converts the given msg to wire format. Args: msg ([uint64_t, capnp_obj]): A 2-element list, where the first element is the capnp id of the message, and the second element is the capnp object. """ wire_msg = [] # Pack first element a...
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import os def _read_requirements(file_name): """ Returns list of required modules for 'install_requires' parameter. Assumes requirements file contains only module lines and comments. """ requirements = [] with open(os.path.join(file_name)) as f: for line in f: if not line.s...
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def removeCharsetFromMime(s): """ Löscht z.B. die Zeichenkette C{UTF-8} aus der Zeichenkette C{text/xml;UTF-8} heraus, sodass nur C{text/xml} zurückgegeben wird. B{Beispiel}: >>> s = "text/xml;UTF-8" >>> removeCharsetFromMime(s) "text/xml" @param s: Zeichenkette C{text/xml;UTF-8} ...
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def accessedTable( data, sql, verbose): """Extract the accessed table from the specified data""" # making function more explicit data = data sql = sql verbose = verbose # inform user of program progress if verbose >= 2: print( "Extracting the ...
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import glob import os def find_env_paths_in_basedirs(base_dirs): """Returns all potential envs in a basedir""" # get potential env path in the base_dirs env_path = [] for base_dir in base_dirs: env_path.extend(glob.glob(os.path.join( os.path.expanduser(base_dir), '*', ''))) # s...
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def finish(result, num_run): """ :param result: str, the string that composed randomly by H and T :param num_run: int, the number of runs that the player decided :return: bool, return when the result fits the number of runs """ n = 0 for i in range(len(result)-2): if result[i] == result[i+1] and result[i+1] !=...
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from pathlib import Path def is_notebook(path: Path) -> bool: """ Checks whether the given file path is Jupyter Notebook or not. Parameters ---------- path: Path Path of the file to check whether it is Jupyter Notebook or not. Returns ------ Returns True when file is Jupyter N...
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def is_highlighted_ins(e): """Returns True if e matches the following pattern: <ins>highlighted</ins> text: See `fragment_chunks` comment for the details """ if len(e) != 0: return False if not e.text: return False if e.text != 'highlighted': return False i...
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import re def build_main_content(mc_lines, ref_map): """ Builds main content lines but renumbering the footnotes. Filters any footnotes in the main content with their new re-numbered instances. """ outlines = [] # Since we're re-filtering the same line multiple times, we replace # <sup></...
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async def admin(mixer): """Generate an admin user.""" admin = mixer.blend('example.models.User', email='admin@example.com', is_super=True) admin.password = admin.generate_password('pass') return await admin.save(force_insert=True)
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def bw24(x): """Return the bit weight of the lowest 24 bits of x""" x = (x & 0x555555) + ((x & 0xaaaaaa) >> 1) x = (x & 0x333333) + ((x & 0xcccccc) >> 2) x = (x + (x >> 4)) & 0xf0f0f return (x + (x >> 8) + (x >> 16)) & 0x1f
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import time def toJulian(year, month, day): """ Use time functions """ dateString = str(year) + ' ' + str(month) + ' ' + str(day) + ' UTC' tup = time.strptime(dateString, '%Y %m %d %Z') sec = time.mktime(tup) days = (sec - time.timezone) / 86400.0 # Cancel time zone correction jday = ...
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def project_data(samples, U, K): """ Computes the reduced data representation when projecting only on to the top "K" eigenvectors """ # Reduced U is the first "K" columns in U reduced_U = U[:, :K] return samples.dot(reduced_U)
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def num_ast_nodes(repo): """Total number of ast nodes; a measure of code volume.""" nodes = sum(count for count in repo._calc('ast_node_counts').values()) nodes += 1 # used as relative, don't want 0 return nodes
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def ROStime_to_NTP64(ROStime): """ Convert rospy.Time object to a 64bit NTP timestamp @param ROStime: timestamp @type ROStime: rospy.Time @return: 64bit NTP representation of the input @rtype: int """ NTPtime = ROStime.secs << 32 # NTPtime |= nanoseconds * 2^31 / 1x10^9 NTPtime |= i...
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import zipfile import os def create_zip(path, zip_filename): """save content to file. Args: path: directory to zip zip_filename: full path to new created zip file. """ try: ziph = zipfile.ZipFile(zip_filename, "w", zipfile.ZIP_DEFLATED) for root, _, files in os.walk(path): for file2 in...
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def _minmax(dataframe): """Transform features by rescaling each feature to the range between 0 and 1. The transformation is given by: scaled_value = (feature_value - min) / (mix - min) where min, max = feature_range. This transformation is often used as an alternative to zero mean, unit v...
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def test_integrity(param_test): """ Test integrity of function """ # find the test that is performed and check the integrity of the output index_args = param_test.default_args.index(param_test.args) # Removed because of: # https://travis-ci.org/neuropoly/spinalcordtoolbox/jobs/482061826 ...
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def reverse_dict(dictionary): """Reverse a dictionary. Keys become values and vice versa. Parameters ---------- dictionary : dict Dictionary to reverse Returns ------- dict Reversed dictionary Raises ------ TypeError If there is a value which is un...
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def dtft(xn): """离散时间傅里叶变换 :Parameters: - xn: 离散非周期序列,序列只能有1个自变量 :Returns: 频谱密度函数(周期连续信号),自变量为Omega(用W表示) """ raise Exception("Can't sum from -oo to oo") n = tuple(xn.free_symbols)[0] W = sy.symbols('W') r = (n, -sy.oo, sy.oo) xW = sy.Sum(xn * sy.exp(-sy.I * W * n), r) ...
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import os def get_all_ini_files(): """ collect all ini files in the current folder :return: a list of sorted file names """ current_path = os.getcwd() all_files = os.listdir(current_path) ini_files = [] for item in all_files: if os.path.isfile(item) and item.endswith('.ini'):...
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def expp_xor_indep(p1, p2): """ Probability of term t1 XOR t2 being 1 if t1 is 1 with p1 and t2 is 1 with p2. t1 and t2 has to be independent (no common sub-term). Due to associativity can be computed on multiple terms: t1 ^ t2 ^ t3 ^ t4 = (((t1 ^ t2) ^ t3) ^ t4) - zipping. XOR: a b | r ...
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def noOut(_): """Outputs nothing.""" return None
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import torch def conv3x3(in_channel, out_channel, stride=1, padding=1,dilation=1, bias=True): """3x3 convolution with padding""" return torch.nn.Conv2d(in_channel, out_channel, kernel_size=(3,3), stride=(stride,stride), ...
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def length_of_range(range): """Helper- returns the length of a range from start to finish in ms""" return range[1] - range[0]
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def listify(x, none_value=[]): """Make a list of the argument if it is not a list.""" if isinstance(x, list): return x elif isinstance(x, tuple): return list(x) elif x is None: return none_value else: return [x]
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import os def safe_pjoin(dirname, *args): """ Join path components with os.path.join, skipping the first component if it is None. """ if dirname is None: return os.path.join(*args) else: return os.path.join(dirname, *args)
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import argparse def parameter_parser(): """ A method to parse up command line parameters. By default it gives an embedding of the partial NCI1 graph dataset. The default hyperparameters give a good quality representation without grid search. Representations are sorted by ID. """ parser = argp...
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def EqualVersions(version, baseline): """Test that a version is acceptable as compared to the baseline. Meant to be used to compare version numbers as returned by a package itself and not user input. Args: version: distutils.version.LooseVersion. The version that is being checked. baseline: di...
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import os def exists(file_name): """ Checks to see if a file exists. Args: file_name: The file to check if it exists. Returns: True if it exists, False otherwise. """ return os.path.exists(file_name)
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import os def incoming_paths(root_dir, parent_dir): """Create a set of paths in which the victims of tree conflicts are children of PARENT_DIR. ROOT_DIR should be a shallower directory in which items "F1" and "D1" can pre-exist and be shared across multiple parent dirs.""" return { 'F1' : os.pa...
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def unique(iterable): """Return an iterable of the same type which contains unique items. This function assumes that: type(iterable)(list(iterable)) == iterable which is true for tuples, lists and deques (but not for strings) >>> unique([1, 2, 3, 1, 2, 3, 4, 2, 3, 4, 1, 1, 2]) [1, 2, 3, 4] ...
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def qc_syntax_test(self): """ It verifies that wf.data contains the recomentated data structure to pass the rest of the QC test. Each parameter (for example, TEMP) and each index (for example, TIME) must have a column with the flags of the values (for example, TEMP_QC and TIME_QC). Returns ...
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def modified(number, percent): """return the amount (or any other number) with added margin given by percent parameter (result has type float) """ if percent: return number * (100 + percent) / 100. else: return float(number)
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def print_bytearray(array: bytearray) -> str: """Outputs string of all bytes in HEX without any formatting. Parameters ---------- array : byte array The byte array to be printed. Returns ------- str A string representation of the byte array in HEX format. """ string...
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def format_size(size): """Convert a size in bytes into a human readable string. Example ------- :: >>>format_size(2.25*1024) '2.25 kB' Parameters ---------- size : int Size in bytes. Returns ------- str """ for unit in ['bytes', 'kB', 'MB']: ...
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def get_row_nnz(mat, row): """Return the number of nonzeros in row. """ return mat.indptr[row+1] - mat.indptr[row]
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def vector(v, specs): """ Stub for conversion that isn't needed in python case. (Convert a 1D numpy array to python.) Parameters ---------- v : numpy array 1D array to convert. specs : dictionary Dictionary of user-specified and default parameters to formatting Returns...
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def test(): """ Return a test message. """ return 'The web server is up and running.'
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def NEST(*args): """ NEST generates nested names for steps """ return '.'.join(args)
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